Pregenerated sensors for LY6G5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043807Ensembl transcript IDs: ENSMUST00000062657.5, ENSMUST00000172854.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGCCAGATGTAAAGGTATGCAAGTCCACCCTTGGGCCTGGCTGCTaGGGCTCGGATATGGCATATGACCAGACTGAGGGTACACGGAGA | + |
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Preference number: 1 (lower is better) Translates to: VPDVKVCKSTLGPGC*GSDMAYDQTEGTRR Trigger: TCTCCGTGTACCCTCAGTCTGGTCATATGCCATATCCGAGCCTCAGCAGCCAGGCCCAAGGGTGGACTTGCATACCTTTACATCTGGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR CCA 90 bp | AGGTATGCAAGTCCACCCTTGGGCCTGGCTGCTGAGGCTCGGATATaGCATATGACCAGACTGAGGGTACACGGAGACAGTGACACTCAA | + |
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Preference number: 1 (lower is better) Translates to: RYASPPLGLAAEARI*HMTRLRVHGDSDTQ Trigger: TTGAGTGTCACTGTCTCCGTGTACCCTCAGTCTGGTCATATGCCATATCCGAGCCTCAGCAGCCAGGCCCAAGGGTGGACTTGCATACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR TCA 90 bp | CCATGTAGAGCAGAAAGCTTAAGAGATCAGAGGGCTCAGAGGATCTaGGTGTTCACAGACCGCAGAGCAGGATGCTGGGCCCCTCAAAGG | + |
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Preference number: 1 (lower is better) Translates to: PCRAESLRDQRAQRI*VFTDRRAGCWAPQR Trigger: CCTTTGAGGGGCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCTGATCTCTTAAGCTTTCTGCTCTACATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR CCA 90 bp | AGGAGGAGGACAAACCAGCCCCAGATCCAGGGGCCATACAGAATTTaGCCATGTAGAGCAGAAAGCTTAAGAGATCAGAGGGCTCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: RRRTNQPQIQGPYRI*PCRAESLRDQRAQR Trigger: CCTCTGAGCCCTCTGATCTCTTAAGCTTTCTGCTCTACATGGCCAAATTCTGTATGGCCCCTGGATCTGGGGCTGGTTTGTCCTCCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR-3UTR TCA 90 bp | CCCTTGGGCCTGGCTGCTGAGGCTCGGATATGGCATATGACCAGACTGAGGGTAAGGGCTCAGAGGATCTaGGTGTTCACAGACCGCAGA | + |
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Preference number: 2 (lower is better) Translates to: PLGLAAEARIWHMTRLRVRAQRI*VFTDRR Trigger: TCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCT...TACCCTCAGTCTGGTCATATGCCATATCCGAGCCTCAGCAGCCAGGCCCAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR-3UTR GCA 90 bp | AGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAACCAGCCCCAGATCCAGACCGCAGAGCAGGATaGTGGGCCCCTCAAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: RTVLKFPEKEEDKPAPDPDRRAG*WAPQRK Trigger: CTTCCTTTGAGGGGCCCAGCATCCTGCTCTGCGGTC...TGGATCTGGGGCTGGTTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR-3UTR GCA 90 bp | AAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAAGACCGCAGAGCAGGATaGTGGGCCCCTCAAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KSALVRTVLKFPEKEEDKDRRAG*WAPQRK Trigger: CTTCCTTTGAGGGGCCCAGCATCCTGCTCTGCGGTC...TTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGCTGACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR-3UTR CCA 90 bp | GCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAACCAGCCGGGCCATACAGAATTTaGCCATGTAGAGCAGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: ALVRTVLKFPEKEEDKPAGPYRI*PCRAES Trigger: GCTTTCTGCTCTACATGGCCAAATTCTGTATGGCCC...GGCTGGTTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR-3UTR CCA 90 bp | AAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAAGGGCCATACAGAATTTaGCCATGTAGAGCAGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: KSALVRTVLKFPEKEEDKGPYRI*PCRAES Trigger: GCTTTCTGCTCTACATGGCCAAATTCTGTATGGCCC...TTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGCTGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR TCA 72 bp | GAGCCCCTACAACCCCTCACAAGGCAGGCAGTCAGGTaGAATGATGAGACCAAGGACAGCGGACCAGGATGG | + |
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Preference number: 3 (lower is better) Translates to: EPLQPLTRQAVR*NDETKDSGPGW Trigger: CCATCCTGGTCCGCTGTCCTTGGTCTCATCATTTCACCTGACTGCCTGCCTTGTGAGGGGTTGTAGGGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172854.2 |
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| 3UTR TCA 72 bp | GCAGAAAGCTTAAGAGATCAGAGGGCTCAGAGGATCTaGGTGTTCACAGACCGCAGAGCAGGATGCTGGGCC | + |
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Preference number: 3 (lower is better) Translates to: AESLRDQRAQRI*VFTDRRAGCWA Trigger: GGCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCTGATCTCTTAAGCTTTCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR TCA 72 bp | GTAAAGGTATGCAAGTCCACCCTTGGGCCTGGCTGCTaGGGCTCGGATATGGCATATGACCAGACTGAGGGT | + |
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Preference number: 3 (lower is better) Translates to: VKVCKSTLGPGC*GSDMAYDQTEG Trigger: ACCCTCAGTCTGGTCATATGCCATATCCGAGCCTCAGCAGCCAGGCCCAAGGGTGGACTTGCATACCTTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR TCA 72 bp | ATGGCATATGACCAGACTGAGGGTACACGGAGACAGTaGCACTCAAAATGGGATTCATTGTCAAGTCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: MAYDQTEGTRRQ*HSKWDSLSSQP Trigger: AGGCTGACTTGACAATGAATCCCATTTTGAGTGTCACTGTCTCCGTGTACCCTCAGTCTGGTCATATGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR TCA 72 bp | CACTCAAAATGGGATTCATTGTCAAGTCAGCCTTGGTaGGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: HSKWDSLSSQPW*EPSLSFLKRRR Trigger: CCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGCTGACTTGACAATGAATCCCATTTTGAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CCA 90 bp | AGAGGGCTCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGCCCAGGGGCATGCCCAGATaGCTTCCTGGGGACCCACGC | + |
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Preference number: 4 (lower is better) Translates to: RGLRGSECSQTAEQDAGPRGMPR*LPGDPR Trigger: GCGTGGGTCCCCAGGAAGCCATCTGGGCATGCCCCT...GGGCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR TCA 90 bp | AGTCCACCCTTGGGCCTGGCTGCTGAGGCTCGGATATGGCATATGACCAGACTGGCTCCGGGGGCAGAATaGGAGACTCCAGGCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SPPLGLAAEARIWHMTRLAPGAE*ETPGPQ Trigger: CTGAGGGCCTGGAGTCTCTCATTCTGCCCCCGGAGC...CAGTCTGGTCATATGCCATATCCGAGCCTCAGCAGCCAGGCCCAAGGGTGGACT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGGCTCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGCACGCTGACAGGGGCATaGCCAGATGGCTTCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SEGSEDLSVHRPQSRMLGTLTGA*PDGFLG Trigger: CCCCAGGAAGCCATCTGGGCATGCCCCTGTCAGCGT...GCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR TCA 90 bp | ATCAGAGGGCTCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGAGGGTGCTCTGGTGCTaGGCACTGGACCAGGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: IRGLRGSECSQTAEQDAGRVLWC*ALDQEL Trigger: CAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCT...CCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCTGAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR TCA 90 bp | GCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAACCAGCCGCTCCGGGGGCAGAATaGGAGACTCCAGGCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: ALVRTVLKFPEKEEDKPAAPGAE*ETPGPQ Trigger: CTGAGGGCCTGGAGTCTCTCATTCTGCCCCCGGAGC...GGCTGGTTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CCA 90 bp | GCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAACCAGCCGCCCAGATGGCTTCCTaGGGACCCACGCAGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: ALVRTVLKFPEKEEDKPAAQMAS*GPTQGA Trigger: AGCACCCTGCGTGGGTCCCCAGGAAGCCATCTGGGC...GGCTGGTTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGGCTCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGCCACTGGACCAGGAGTTaGAGTAATCGTACTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SEGSEDLSVHRPQSRMLGHWTRS*SNRTGS Trigger: GCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTG...GCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR TCA 90 bp | GCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAACCAGCCAGGGTGCTCTGGTGCTaGGCACTGGACCAGGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: ALVRTVLKFPEKEEDKPARVLWC*ALDQEL Trigger: CAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCT...GGCTGGTTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGCCCCTCAAAGCACTGGACCAGGAGTTaGAGTAATCGTACTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SEDLSVHRPQSRMLGPSKHWTRS*SNRTGS Trigger: GCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTG...CTTTGAGGGGCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CCA 90 bp | TCAGAGGGCTCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGCTCGCAAAGCCCACCATaGTCAGCATACCTACAAGCA | + |
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Preference number: 4 (lower is better) Translates to: SEGSEDLSVHRPQSRMLGSQSPP*SAYLQA Trigger: TGCTTGTAGGTATGCTGACCATGGTGGGCTTTGCGA...GCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGAGCCCTCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062657.5 |
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| CDS-3UTR CCA 90 bp | CTGAGGGTACACGGAGACAGTGACACTCAAAATGGGATTCATTGTCAAGTCAGCAGGGGCATGCCCAGATaGCTTCCTGGGGACCCACGC | + |
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Preference number: 4 (lower is better) Translates to: LRVHGDSDTQNGIHCQVSRGMPR*LPGDPR Trigger: GCGTGGGTCCCCAGGAAGCCATCTGGGCATGCCCCT...GCTGACTTGACAATGAATCCCATTTTGAGTGTCACTGTCTCCGTGTACCCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR GCA 90 bp | CTCAAAATGGGATTCATTGTCAAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTACGCTGACAGGGGCATaGCCAGATGGCTTCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: LKMGFIVKSALVRTVLKFTLTGA*PDGFLG Trigger: CCCCAGGAAGCCATCTGGGCATGCCCCTGTCAGCGT...AAACTTAAGGACGGTTCTCACCAAGGCTGACTTGACAATGAATCCCATTTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CCA 90 bp | ACACTCAAAATGGGATTCATTGTCAAGTCAGCCTTGGTGAGAACCGTCCTTAAGTCTAAGAGGCACAGGTaGCAGGTACGGACTCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: TLKMGFIVKSALVRTVLKSKRHR*QVRTLA Trigger: TGCCAGAGTCCGTACCTGCCACCTGTGCCTCTTAGA...CTTAAGGACGGTTCTCACCAAGGCTGACTTGACAATGAATCCCATTTTGAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062657.5 |
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| CDS-3UTR CCA 90 bp | CTGAGGGTACACGGAGACAGTGACACTCAAAATGGGATTCATTGTCAAGTCAGCTCTGGTGCTGAGCACTaGACCAGGAGTTGCAGTAAT | + |
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Preference number: 4 (lower is better) Translates to: LRVHGDSDTQNGIHCQVSSGAEH*TRSCSN Trigger: ATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGA...GCTGACTTGACAATGAATCCCATTTTGAGTGTCACTGTCTCCGTGTACCCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR TCA 90 bp | TACACGGAGACAGTGACACTCAAAATGGGATTCATTGTCAAGTCAGCCTTGGTGAAGGACCAGAAGTCCTaGACTGTTGAGGAACAAGTA | + |
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Preference number: 4 (lower is better) Translates to: YTETVTLKMGFIVKSALVKDQKS*TVEEQV Trigger: TACTTGTTCCTCAACAGTTCAGGACTTCTGGTCCTT...CACCAAGGCTGACTTGACAATGAATCCCATTTTGAGTGTCACTGTCTCCGTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR GCA 90 bp | ACACTCAAAATGGGATTCATTGTCAAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTCTGAGCCAGAAATaGAGCCTAGCGAAGGGTCTT | + |
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Preference number: 4 (lower is better) Translates to: TLKMGFIVKSALVRTVLKFLSQK*SLAKGL Trigger: AAGACCCTTCGCTAGGCTGCATTTCTGGCTCAGAAA...CTTAAGGACGGTTCTCACCAAGGCTGACTTGACAATGAATCCCATTTTGAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062657.5 |
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| CDS-3UTR CCA 90 bp | CTCAAAATGGGATTCATTGTCAAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTTCTGGTGCTGAGCACTaGACCAGGAGTTGCAGTAAT | + |
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Preference number: 4 (lower is better) Translates to: LKMGFIVKSALVRTVLKFSGAEH*TRSCSN Trigger: ATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGA...AAACTTAAGGACGGTTCTCACCAAGGCTGACTTGACAATGAATCCCATTTTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| 3UTR CAA 72 bp | GTGACACTCAAAATGGGATTCATTGTCAAGTCAGCCTaGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: VTLKMGFIVKSA*VRTVLKFPEKE Trigger: CTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGCTGACTTGACAATGAATCCCATTTTGAGTGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS CCA 90 bp | CTAGCGAAGGGTCTTCTAAGAGGCACAGGTGGCAGGTACGGACTCTaGCAACTGGAGCCTTCCCCATCGCAAAGCCCACCATGGTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LAKGLLRGTGGRYGL*QLEPSPSQSPPWSA Trigger: TGCTGACCATGGTGGGCTTTGCGATGGGGAAGGCTCCAGTTGCCAGAGTCCGTACCTGCCACCTGTGCCTCTTAGAAGACCCTTCGCTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062657.5 |
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| CDS CCA 90 bp | GAGCCAGAAATGCAGCCTAGCGAAGGGTCTTCTAAGAGGCACAGGTaGCAGGTACGGACTCTGGCAACTGGAGCCTTCCCCATCGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: EPEMQPSEGSSKRHR*QVRTLATGAFPIAK Trigger: CTTTGCGATGGGGAAGGCTCCAGTTGCCAGAGTCCGTACCTGCCACCTGTGCCTCTTAGAAGACCCTTCGCTAGGCTGCATTTCTGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062657.5 |
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| CDS CCA 90 bp | GATGGCTTCCTGGGGACCCACGCAGGGTGCTCTGGTGCTGAGCACTaGACCAGGAGTTGCAGTAATCGTACTGGCAGCAATCAGCCTTAT | + |
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Preference number: 5 (lower is better) Translates to: DGFLGTHAGCSGAEH*TRSCSNRTGSNQPY Trigger: ATAAGGCTGATTGCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCTGCGTGGGTCCCCAGGAAGCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS GCA 90 bp | GGGACCCACGCAGGGTGCTCTGGTGCTGAGCACTGGACCAGGAGTTaGAGTAATCGTACTGGCAGCAATCAGCCTTATACAAGTAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: GTHAGCSGAEHWTRS*SNRTGSNQPYTSSL Trigger: CAGACTACTTGTATAAGGCTGATTGCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCTGCGTGGGTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CAA 90 bp | GACCGCAGAGCAGGATGCTGGGCCCCTCAAAGGAAGAGTCTCTCAGACAGAGCAAGAAGTCCTGAACTGTaGAGGAACAAGTATATTTGG | + |
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Preference number: 5 (lower is better) Translates to: DRRAGCWAPQRKSLSDRARSPEL*RNKYIW Trigger: CCAAATATACTTGTTCCTCAACAGTTCAGGACTTCT...TGCTCTGTCTGAGAGACTCTTCCTTTGAGGGGCCCAGCATCCTGCTCTGCGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGGATCTGAGTGTTCACAGACCGCAGAGCAGGATGCTGGGCCCCTCAAAGAGAAGTCCTGAACTGTaGAGGAACAAGTATATTTGG | + |
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Preference number: 5 (lower is better) Translates to: SEDLSVHRPQSRMLGPSKRSPEL*RNKYIW Trigger: CCAAATATACTTGTTCCTCAACAGTTCAGGACTTCT...CTTTGAGGGGCCCAGCATCCTGCTCTGCGGTCTGTGAACACTCAGATCCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CAA 90 bp | GTCAAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACGATCACATGCCTTTCTaGACATCGGTAGGAATGATG | + |
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Preference number: 5 (lower is better) Translates to: VKSALVRTVLKFPEKEEDDHMPF*TSVGMM Trigger: CATCATTCCTACCGATGTCAAGAAAGGCATGTGATC...GTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGCTGACTTGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS-3UTR CAA 90 bp | AAGTCAGCCTTGGTGAGAACCGTCCTTAAGTTTCCTGAAAAGGAGGAGGACAAAGATCACATGCCTTTCTaGACATCGGTAGGAATGATG | + |
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Preference number: 5 (lower is better) Translates to: KSALVRTVLKFPEKEEDKDHMPF*TSVGMM Trigger: CATCATTCCTACCGATGTCAAGAAAGGCATGTGATC...TTTGTCCTCCTCCTTTTCAGGAAACTTAAGGACGGTTCTCACCAAGGCTGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS TCA 90 bp | GTTGCAGTAATCGTACTGGCAGCAATCAGCCTTATACAAGTAGTCTaGTTGGTAGATCACATGCCTTTCTTGACATCGGTAGGAATGATG | + |
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Preference number: 5 (lower is better) Translates to: VAVIVLAAISLIQVV*LVDHMPFLTSVGMM Trigger: CATCATTCCTACCGATGTCAAGAAAGGCATGTGATCTACCAATCAGACTACTTGTATAAGGCTGATTGCTGCCAGTACGATTACTGCAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS CCA 72 bp | GGTCTTCTAAGAGGCACAGGTGGCAGGTACGGACTCTaGCAACTGGAGCCTTCCCCATCGCAAAGCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: GLLRGTGGRYGL*QLEPSPSQSPP Trigger: TGGTGGGCTTTGCGATGGGGAAGGCTCCAGTTGCCAGAGTCCGTACCTGCCACCTGTGCCTCTTAGAAGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062657.5 |
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| CDS CCA 72 bp | CTGGGGACCCACGCAGGGTGCTCTGGTGCTGAGCACTaGACCAGGAGTTGCAGTAATCGTACTGGCAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: LGTHAGCSGAEH*TRSCSNRTGSN Trigger: ATTGCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCTGCGTGGGTCCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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| CDS GCA 72 bp | GCAGGGTGCTCTGGTGCTGAGCACTGGACCAGGAGTTaGAGTAATCGTACTGGCAGCAATCAGCCTTATACA | + |
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Preference number: 6 (lower is better) Translates to: AGCSGAEHWTRS*SNRTGSNQPYT Trigger: TGTATAAGGCTGATTGCTGCCAGTACGATTACTGCAACTCCTGGTCCAGTGCTCAGCACCAGAGCACCCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062657.5 ENSMUST00000172854.2 |
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