Pregenerated sensors for LY6F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022583Ensembl transcript IDs: ENSMUST00000023247.13, ENSMUST00000189654.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGTaGGGCATTTACCAAGCAGGGGCTATAAAGTTGAAA | + |
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Preference number: 3 (lower is better) Translates to: SRKYIFEIPREE*GIYQAGAIKLK Trigger: TTTCAACTTTATAGCCCCTGCTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR TCA 90 bp | CTGCCTCTACCCTCTGCTAGCCACGGGCCTCCAGGGCCAAGATTAGCAAGCCACGCAGGCAATTCCAAGTaGAACTCCCAGGCAGTTATA | + |
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Preference number: 4 (lower is better) Translates to: LPLPSASHGPPGPRLASHAGNSK*NSQAVI Trigger: TATAACTGCCTGGGAGTTTCACTTGGAATTGCCTGC...GTGGCTTGCTAATCTTGGCCCTGGAGGCCCGTGGCTAGCAGAGGGTAGAGGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR TCA 90 bp | CTGCCTCTACCCTCTGCTAGCCACGGGCCTCCAGGGCCAAGATTAGCAAGCCACATAAGTTCTACCTGCTaGGAAATGCAGACTGCATCA | + |
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Preference number: 4 (lower is better) Translates to: LPLPSASHGPPGPRLASHISSTC*EMQTAS Trigger: TGATGCAGTCTGCATTTCTCAGCAGGTAGAACTTAT...GTGGCTTGCTAATCTTGGCCCTGGAGGCCCGTGGCTAGCAGAGGGTAGAGGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | GCTAGCCACGGGCCTCCAGGGCCAAGATTAGCAAGCCACAACAAAATGGCATTCTCCAGTGGAAAATGGTaGATTGCAGAGGTCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: ASHGPPGPRLASHNKMAFSSGKW*IAEVFL Trigger: AAGGAAGACCTCTGCAATGCACCATTTTCCACTGGA...GAATGCCATTTTGTTGTGGCTTGCTAATCTTGGCCCTGGAGGCCCGTGGCTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | GCCTCCAGGGCCAAGATTAGCAAGCCACAACAAAATGGCATTCTAGGAAGTACACTGAGAAATGCAGACTaGATCAGGGTAGGGGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: ASRAKISKPQQNGILGSTLRNAD*IRVGAG Trigger: ACCTGCCCCTACCCTGATGCAGTCTGCATTTCTCAG...TGTACTTCCTAGAATGCCATTTTGTTGTGGCTTGCTAATCTTGGCCCTGGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | GCCTCCAGGGCCAAGATTAGCAAGCCACAACAAAATGGCATTCTAGGAAGTACACTACCTGCTGAGAAATaGAGACTGCATCAGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: ASRAKISKPQQNGILGSTLPAEK*RLHQGR Trigger: CCTACCCTGATGCAGTCTGCATTTCTCAGCAGGTAG...TGTACTTCCTAGAATGCCATTTTGTTGTGGCTTGCTAATCTTGGCCCTGGAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | TTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGCAGGGGCTATAAAGTTGCTGAGAAATGCAGACTaGATCAGGGTAGGGGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: FEIPREEWGIYQAGAIKLLRNAD*IRVGAG Trigger: ACCTGCCCCTACCCTGATGCAGTCTGCATTTCTCAG...CAACTTTATAGCCCCTGCTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| 3UTR CAA 72 bp | GAGGAGTGGGGCATTTACCAAGCAGGGGCTATAAAGTaGAAACAACGTATTCCACAAACACTACTCCCACCT | + |
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Preference number: 4 (lower is better) Translates to: EEWGIYQAGAIK*KQRIPQTLLPP Trigger: AGGTGGGAGTAGTGTTTGTGGAATACGTTGTTTCAACTTTATAGCCCCTGCTTGGTAAATGCCCCACTCCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR TCA 90 bp | TTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGCAGGGGCTATAAAGTTGGCAGGCAATTCCAAGTaGAACTCCCAGGCAGTTATA | + |
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Preference number: 4 (lower is better) Translates to: FEIPREEWGIYQAGAIKLAGNSK*NSQAVI Trigger: TATAACTGCCTGGGAGTTTCACTTGGAATTGCCTGC...CAACTTTATAGCCCCTGCTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR TCA 90 bp | TTACCAAGCAGGGGCTATAAAGTTGAAACAACGTATTCCACAAACACTACTCCCGTAGGGGCAGGTAATTaGTTTGCAGGCAATTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: LPSRGYKVETTYSTNTTPVGAGN*FAGNSK Trigger: CTTGGAATTGCCTGCAAATCAATTACCTGCCCCTAC...GGGAGTAGTGTTTGTGGAATACGTTGTTTCAACTTTATAGCCCCTGCTTGGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | TTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGCAGGGGCTATAAAGTTGTGGAAAATGGTGCATTaGAGAGGTCTTCCTTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: FEIPREEWGIYQAGAIKLWKMVH*RGLPCN Trigger: GTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCA...CAACTTTATAGCCCCTGCTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR TCA 90 bp | TCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGCAGTAGGGGCAGGTAATTaGTTTGCAGGCAATTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: SRKYIFEIPREEWGIYQAVGAGN*FAGNSK Trigger: CTTGGAATTGCCTGCAAATCAATTACCTGCCCCTAC...TGCTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | ATTCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGCTACCTGCTGAGAAATaGAGACTGCATCAGGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: ILGSTYLKFLERSGAFTKLPAEK*RLHQGR Trigger: CCTACCCTGATGCAGTCTGCATTTCTCAGCAGGTAG...CTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | TTACCAAGCAGGGGCTATAAAGTTGAAACAACGTATTCCACAAACACTACTCCCTCCAGTGGAAAATGGTaGATTGCAGAGGTCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LPSRGYKVETTYSTNTTPSSGKW*IAEVFL Trigger: AAGGAAGACCTCTGCAATGCACCATTTTCCACTGGA...GGGAGTAGTGTTTGTGGAATACGTTGTTTCAACTTTATAGCCCCTGCTTGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CCA 90 bp | ATTCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGAGGTGCTGCCTCCAGTaGAAAATGGTGCATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ILGSTYLKFLERSGAFTKRCCLQ*KMVHCR Trigger: TCTGCAATGCACCATTTTCCACTGGAGGCAGCACCT...CTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CCA 90 bp | AAGCCACAACAAAATGGCATTCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGGTGCTGCCTCCAGTaGAAAATGGTGCATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: KPQQNGILGSTYLKFLERRCCLQ*KMVHCR Trigger: TCTGCAATGCACCATTTTCCACTGGAGGCAGCACCT...CCTCTCTAGGAATTTCAAATATGTACTTCCTAGAATGCCATTTTGTTGTGGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR GCA 90 bp | AAGCCACAACAAAATGGCATTCTAGGAAGTACATATTTGAAATTCCTAGAGAGGTGCAGAGGTCTTCCTTaGAACAGGAAGTATTCACGT | + |
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Preference number: 4 (lower is better) Translates to: KPQQNGILGSTYLKFLERCRGLP*NRKYSR Trigger: ACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCA...CCTCTCTAGGAATTTCAAATATGTACTTCCTAGAATGCCATTTTGTTGTGGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| 3UTR CAA 72 bp | AAGCCACAACAAAATGGCATTCTAGGAAGTACATATTaGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAG | + |
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Preference number: 4 (lower is better) Translates to: KPQQNGILGSTY*KFLERSGAFTK Trigger: CTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGAATGCCATTTTGTTGTGGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CCA 90 bp | TCTGCAGGAAGACCGAGCCCAGATTTAACAGAAGCACCCTTGTCATaGTCCAGGTGCTGCCTCCAGTGGAAAATGGTGCATTGCAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: SAGRPSPDLTEAPLS*SRCCLQWKMVHCRG Trigger: ACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATCTGGGCTCGGTCTTCCTGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | CCCTCTGCTAGCCACGGGCCTCCAGGGCCAAGATTAGCAAGCCACAACAAAATGGTGGAAAATGGTGCATaGCAGAGGTCTTCCTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: PSASHGPPGPRLASHNKMVENGA*QRSSLQ Trigger: TTGCAAGGAAGACCTCTGCAATGCACCATTTTCCAC...CATTTTGTTGTGGCTTGCTAATCTTGGCCCTGGAGGCCCGTGGCTAGCAGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS GCA 90 bp | AAGCACCCTTGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATGGTaGATTGCAGAGGTCTTCCTTGCAACAGGAAGTATTCACGTTGAC | + |
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Preference number: 5 (lower is better) Translates to: KHPCHGPGAASSGKW*IAEVFLATGSIHVD Trigger: GTCAACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CCA 90 bp | CAGAAGCACCCTTGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATaGTGCATTGCAGAGGTCTTCCTTGCAACAGGAAGTATTCACGTT | + |
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Preference number: 5 (lower is better) Translates to: QKHPCHGPGAASSGK*CIAEVFLATGSIHV Trigger: AACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CCA 90 bp | GATTTAACAGAAGCACCCTTGTCATGGTCCAGGTGCTGCCTCCAGTaGAAAATGGTGCATTGCAGAGGTCTTCCTTGCAACAGGAAGTAT | + |
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Preference number: 5 (lower is better) Translates to: DLTEAPLSWSRCCLQ*KMVHCRGLPCNRKY Trigger: ATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | CCCTCTGCTAGCCACGGGCCTCCAGGGCCAAGATTAGCAAGCCACAACAAAATGCTTTACTTTCCTTCTTaGAGAGTCCACAATAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: PSASHGPPGPRLASHNKMLYFPS*RVHNKF Trigger: GAACTTATTGTGGACTCTCAAAGAAGGAAAGTAAAG...CATTTTGTTGTGGCTTGCTAATCTTGGCCCTGGAGGCCCGTGGCTAGCAGAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | GCCTCCAGGGCCAAGATTAGCAAGCCACAACAAAATGGCATTCTAGGAAGTACACAGGAAGTATTCACGTaGACAGTAGTACCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: ASRAKISKPQQNGILGSTQEVFT*TVVPRI Trigger: GATCCTGGGTACTACTGTCAACGTGAATACTTCCTG...TGTACTTCCTAGAATGCCATTTTGTTGTGGCTTGCTAATCTTGGCCCTGGAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | TTACCAAGCAGGGGCTATAAAGTTGAAACAACGTATTCCACAAACACTACTCCCTTGCAGAGGTCTTCCTaGCAACAGGAAGTATTCACG | + |
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Preference number: 5 (lower is better) Translates to: LPSRGYKVETTYSTNTTPLQRSS*QQEVFT Trigger: CGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAA...GGGAGTAGTGTTTGTGGAATACGTTGTTTCAACTTTATAGCCCCTGCTTGGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | ATTCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGGTGGAAAATGGTGCATaGCAGAGGTCTTCCTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: ILGSTYLKFLERSGAFTKVENGA*QRSSLQ Trigger: TTGCAAGGAAGACCTCTGCAATGCACCATTTTCCAC...CTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | AAGCCACAACAAAATGGCATTCTAGGAAGTACATATTTGAAATTCCTAGAGAGGCAGGAAGTATTCACGTaGACAGTAGTACCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: KPQQNGILGSTYLKFLERQEVFT*TVVPRI Trigger: GATCCTGGGTACTACTGTCAACGTGAATACTTCCTG...CCTCTCTAGGAATTTCAAATATGTACTTCCTAGAATGCCATTTTGTTGTGGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS-3UTR CAA 90 bp | TCTAGGAAGTACATATTTGAAATTCCTAGAGAGGAGTGGGGCATTTACCAAGCACTTTACTTTCCTTCTTaGAGAGTCCACAATAAGTTC | + |
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Preference number: 5 (lower is better) Translates to: SRKYIFEIPREEWGIYQALYFPS*RVHNKF Trigger: GAACTTATTGTGGACTCTCAAAGAAGGAAAGTAAAG...TGCTTGGTAAATGCCCCACTCCTCTCTAGGAATTTCAAATATGTACTTCCTAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 90 bp | GCAAGGTCTGCAGGAAGACCGAGCCCAGATTTAACAGAAGCACCCTaGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATGGTGCATTGC | + |
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Preference number: 6 (lower is better) Translates to: ARSAGRPSPDLTEAP*SWSRCCLQWKMVHC Trigger: GCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATCTGGGCTCGGTCTTCCTGCAGACCTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CCA 72 bp | GAAGCACCCTTGTCATGGTCCAGGTGCTGCCTCCAGTaGAAAATGGTGCATTGCAGAGGTCTTCCTTGCAAC | + |
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Preference number: 6 (lower is better) Translates to: EAPLSWSRCCLQ*KMVHCRGLPCN Trigger: GTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 72 bp | GCAGGAAGACCGAGCCCAGATTTAACAGAAGCACCCTaGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATG | + |
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Preference number: 6 (lower is better) Translates to: AGRPSPDLTEAP*SWSRCCLQWKM Trigger: CATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATCTGGGCTCGGTCTTCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CCA 72 bp | CCTTGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATaGTGCATTGCAGAGGTCTTCCTTGCAACAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: PCHGPGAASSGK*CIAEVFLATGS Trigger: ACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CCA 72 bp | AGACCGAGCCCAGATTTAACAGAAGCACCCTTGTCATaGTCCAGGTGCTGCCTCCAGTGGAAAATGGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: RPSPDLTEAPLS*SRCCLQWKMVH Trigger: ATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATCTGGGCTCGGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 90 bp | CAGGTGCTGCCTCCAGTGGAAAATGGTGCATTGCAGAGGTCTTCCTaGCAACAGGAAGTATTCACGTTGACAGTAGTACCCAGGATCTCC | + |
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Preference number: 6 (lower is better) Translates to: QVLPPVENGALQRSS*QQEVFTLTVVPRIS Trigger: GGAGATCCTGGGTACTACTGTCAACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS GCA 72 bp | CCAGATTTAACAGAAGCACCCTTGTCATGGTCCAGGTaGTGCCTCCAGTGGAAAATGGTGCATTGCAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PDLTEAPLSWSR*CLQWKMVHCRG Trigger: ACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 72 bp | ATGGTCCAGGTGCTGCCTCCAGTGGAAAATGGTGCATaGCAGAGGTCTTCCTTGCAACAGGAAGTATTCACG | + |
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Preference number: 6 (lower is better) Translates to: MVQVLPPVENGA*QRSSLQQEVFT Trigger: CGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 90 bp | ACCCTTGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATGGTGCATaGCAGAGGTCTTCCTTGCAACAGGAAGTATTCACGTTGACAGTA | + |
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Preference number: 6 (lower is better) Translates to: TLVMVQVLPPVENGA*QRSSLQQEVFTLTV Trigger: TACTGTCAACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS GCA 72 bp | TGTCATGGTCCAGGTGCTGCCTCCAGTGGAAAATGGTaGATTGCAGAGGTCTTCCTTGCAACAGGAAGTATT | + |
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Preference number: 6 (lower is better) Translates to: CHGPGAASSGKW*IAEVFLATGSI Trigger: AATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS GCA 72 bp | GATTTAACAGAAGCACCCTTGTCATGGTCCAGGTGCTaGCTCCAGTGGAAAATGGTGCATTGCAGAGGTCTT | + |
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Preference number: 6 (lower is better) Translates to: DLTEAPLSWSRC*LQWKMVHCRGL Trigger: AAGACCTCTGCAATGCACCATTTTCCACTGGAGGCAGCACCTGGACCATGACAAGGGTGCTTCTGTTAAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 72 bp | CCTCCAGTGGAAAATGGTGCATTGCAGAGGTCTTCCTaGCAACAGGAAGTATTCACGTTGACAGTAGTACCC | + |
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Preference number: 6 (lower is better) Translates to: PPVENGALQRSS*QQEVFTLTVVP Trigger: GGGTACTACTGTCAACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATTTTCCACTGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 90 bp | AATGGTGCATTGCAGAGGTCTTCCTTGCAACAGGAAGTATTCACGTaGACAGTAGTACCCAGGATCTCCATATTTTCAAGATTAGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: NGALQRSSLQQEVFT*TVVPRISIFSRLAG Trigger: CCCTGCTAATCTTGAAAATATGGAGATCCTGGGTACTACTGTCAACGTGAATACTTCCTGTTGCAAGGAAGACCTCTGCAATGCACCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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| CDS CAA 72 bp | GAAAGGAAAGCAGAGTTTGTTCTTTACTTTCCTTCTTaGAGAGTCCACAATAAGTTCTACCTGCTGAGAAAT | + |
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Preference number: 6 (lower is better) Translates to: ERKAEFVLYFPS*RVHNKFYLLRN Trigger: ATTTCTCAGCAGGTAGAACTTATTGTGGACTCTCAAAGAAGGAAAGTAAAGAACAAACTCTGCTTTCCTTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023247.13 ENSMUST00000189654.2 |
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