RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LY6D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034634

Ensembl transcript IDs: ENSMUST00000040404.8

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGCTGGGACACAAGCCACATCTTCCTGTCCTGGGGGAGGCACTGTaGTATATATGTCATCAGCTCTTGGTGCCCACCAAGACCCAGCCC +
Preference number: 1 (lower is better)
Translates to: MLGHKPHLPVLGEAL*YICHQLLVPTKTQP
Trigger: GGGCTGGGTCTTGGTGGGCACCAAGAGCTGATGACATATATAGCACAGTGCCTCCCCCAGGACAGGAAGATGTGGCTTGTGTCCCAGCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR CCA 90 bp GTCCCCCATCTTCCATGCTGGGACACAAGCCACATCTTCCTGTCCTaGGGGAGGCACTGTGCTATATATGTCATCAGCTCTTGGTGCCCA +
Preference number: 1 (lower is better)
Translates to: VPHLPCWDTSHIFLS*GRHCAIYVISSWCP
Trigger: TGGGCACCAAGAGCTGATGACATATATAGCACAGTGCCTCCCCCAGGACAGGAAGATGTGGCTTGTGTCCCAGCATGGAAGATGGGGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR-3UTR CCA 90 bp GAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCACATCTGGTGCCTCCATCATaGCTAAAGCATGGGCCGTGG +
Preference number: 2 (lower is better)
Translates to: EGWKHVCPPSSMLGHKPHLVPPS*LKHGPW
Trigger: CCACGGCCCATGCTTTAGCCATGATGGAGGCACCAG...ATGTGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR-3UTR CAA 90 bp AGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCACAGACCCAGCCCCAGCCTaGAAGGGTATCCCCCAGCCT +
Preference number: 3 (lower is better)
Translates to: RGVEACLSPIFHAGTQATDPAPA*KGIPQP
Trigger: AGGCTGGGGGATACCCTTCAAGGCTGGGGCTGGGTC...TGTGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR CCA 72 bp GCCTTAGCGCCTGGTGCCTCCATCATGGCTAAAGCATaGGCCGTGGGGACACTGACGACTAGAAGGGAAGGG +
Preference number: 3 (lower is better)
Translates to: ALAPGASIMAKA*AVGTLTTRREG
Trigger: CCCTTCCCTTCTAGTCGTCAGTGTCCCCACGGCCCATGCTTTAGCCATGATGGAGGCACCAGGCGCTAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR-3UTR CAA 90 bp AGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCACAATATGTCATCAGCTCTaGGTGCCCACCAAGACCCAG +
Preference number: 3 (lower is better)
Translates to: RGVEACLSPIFHAGTQATICHQL*VPTKTQ
Trigger: CTGGGTCTTGGTGGGCACCAAGAGCTGATGACATAT...TGTGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR TCA 72 bp CCTCCATCATGGCTAAAGCATGGGCCGTGGGGACACTaGCGACTAGAAGGGAAGGGGCAAGGGAAATTCCAA +
Preference number: 3 (lower is better)
Translates to: PPSWLKHGPWGH*RLEGKGQGKFQ
Trigger: TTGGAATTTCCCTTGCCCCTTCCCTTCTAGTCGTCAGTGTCCCCACGGCCCATGCTTTAGCCATGATGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
3UTR GCA 72 bp CACAAGCCACATCTTCCTGTCCTGGGGGAGGCACTGTaGTATATATGTCATCAGCTCTTGGTGCCCACCAAG +
Preference number: 3 (lower is better)
Translates to: HKPHLPVLGEAL*YICHQLLVPTK
Trigger: CTTGGTGGGCACCAAGAGCTGATGACATATATAGCACAGTGCCTCCCCCAGGACAGGAAGATGTGGCTTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR GCA 90 bp TGGTGCCCACCAAGACCCAGCCCCAGCCTTGAAGGGTATCCCCCAGCCTTAGCGCACGTGACATCGAAGTaGCCAGGCTGGGCTAGTGGC +
Preference number: 4 (lower is better)
Translates to: WCPPRPSPSLEGYPPALAHVTSK*PGWASG
Trigger: GCCACTAGCCCAGCCTGGGCACTTCGATGTCACGTG...CGCTAAGGCTGGGGGATACCCTTCAAGGCTGGGGCTGGGTCTTGGTGGGCACCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR TCA 90 bp GTCATCAGCTCTTGGTGCCCACCAAGACCCAGCCCCAGCCTTGAAGGGTATCCCCCTCGGAACCACTGCTaGCATGGCCCTGCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: VISSWCPPRPSPSLEGYPPRNHC*HGPAGC
Trigger: ACAGCCAGCAGGGCCATGTCAGCAGTGGTTCCGAGG...GGGATACCCTTCAAGGCTGGGGCTGGGTCTTGGTGGGCACCAAGAGCTGATGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR GCA 90 bp GTCATCAGCTCTTGGTGCCCACCAAGACCCAGCCCCAGCCTTGAAGGGTATCCCCAGGCTGAGGCTCGTTaGCAGGCCCAGGGTGACACT +
Preference number: 4 (lower is better)
Translates to: VISSWCPPRPSPSLEGYPQAEAR*QAQGDT
Trigger: AGTGTCACCCTGGGCCTGGCAACGAGCCTCAGCCTG...GGGATACCCTTCAAGGCTGGGGCTGGGTCTTGGTGGGCACCAAGAGCTGATGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR TCA 90 bp AGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCACACTGTTGGTGCACACGTaGCATCGAAGTGCCCAGGCT +
Preference number: 4 (lower is better)
Translates to: RGVEACLSPIFHAGTQATLLVHT*HRSAQA
Trigger: AGCCTGGGCACTTCGATGTCACGTGTGCACCAACAG...TGTGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR CCA 90 bp AGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCACATGCAGAAGTAGAAGTTaGACGGGCAGACCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: RGVEACLSPIFHAGTQATCRSRS*TGRPEG
Trigger: ACCCTCAGGTCTGCCCGTCCAACTTCTACTTCTGCA...TGTGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR TCA 90 bp TCAGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCAATTCAGAGGCTCCACTaGGGTGACGGTTTTGCAGAA +
Preference number: 4 (lower is better)
Translates to: SEGWKHVCPPSSMLGHKPIQRLH*GDGFAE
Trigger: TTCTGCAAAACCGTCACCTCAGTGGAGCCTCTGAAT...TGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR TCA 90 bp ATCAGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCGTAGTCGGAGGTGCATaGGTTTGCACACTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: IRGVEACLSPIFHAGTQAVVGGA*VCTLFP
Trigger: AGGAAAGAGTGTGCAAACTCATGCACCTCCGACTAC...GGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR CCA 90 bp TCAGAGGGGTGGAAGCATGTCTGTCCCCCATCTTCCATGCTGGGACACAAGCCAGAGGGTTCTTACAGTTaGCACTGTTGGTGCACACGT +
Preference number: 4 (lower is better)
Translates to: SEGWKHVCPPSSMLGHKPEGSYS*HCWCTR
Trigger: ACGTGTGCACCAACAGTGCCAACTGTAAGAACCCTC...TGGCTTGTGTCCCAGCATGGAAGATGGGGGACAGACATGCTTCCACCCCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR CCA 90 bp ATCATGGCTAAAGCATGGGCCGTGGGGACACTGACGACTAGAAGGGAAGGGGCATTGCATAGGTCAGTCTaGCAGCATTGTGTGACCTCG +
Preference number: 4 (lower is better)
Translates to: IMAKAWAVGTLTTRREGALHRSV*QHCVTS
Trigger: CGAGGTCACACAATGCTGCCAGACTGACCTATGCAA...TGCCCCTTCCCTTCTAGTCGTCAGTGTCCCCACGGCCCATGCTTTAGCCATGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CCA 90 bp TGTCCAGGTGCAGCGCTGACCAGCCTCTCGTTGCATAGGTCAGTCTaGCAGCATTGTGTGACCTCGGAACCACTGCTGACATGGCCCTGC +
Preference number: 5 (lower is better)
Translates to: CPGAALTSLSLHRSV*QHCVTSEPLLTWPC
Trigger: GCAGGGCCATGTCAGCAGTGGTTCCGAGGTCACACAATGCTGCCAGACTGACCTATGCAACGAGAGGCTGGTCAGCGCTGCACCTGGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR CAA 90 bp TGGTGCCCACCAAGACCCAGCCCCAGCCTTGAAGGGTATCCCCCAGCCTTAGCGCGGAGGTGCATGAGTTaGCACACTCTTTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: WCPPRPSPSLEGYPPALARRCMS*HTLSSP
Trigger: TGGTGAGGAAAGAGTGTGCAAACTCATGCACCTCCG...CGCTAAGGCTGGGGGATACCCTTCAAGGCTGGGGCTGGGTCTTGGTGGGCACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CCA 90 bp ACAGTTGGCACTGTTGGTGCACACGTGACATCGAAGTGCCCAGGCTaGGCTAGTGGCCACAGCCAAGACAAGGAGGACGAGCAGAGCTGT +
Preference number: 5 (lower is better)
Translates to: TVGTVGAHVTSKCPG*ASGHSQDKEDEQSC
Trigger: ACAGCTCTGCTCGTCCTCCTTGTCTTGGCTGTGGCCACTAGCCCAGCCTGGGCACTTCGATGTCACGTGTGCACCAACAGTGCCAACTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS GCA 90 bp AGGGTTCTTACAGTTGGCACTGTTGGTGCACACGTGACATCGAAGTaGCCAGGCTGGGCTAGTGGCCACAGCCAAGACAAGGAGGACGAG +
Preference number: 5 (lower is better)
Translates to: RVLTVGTVGAHVTSK*PGWASGHSQDKEDE
Trigger: CTCGTCCTCCTTGTCTTGGCTGTGGCCACTAGCCCAGCCTGGGCACTTCGATGTCACGTGTGCACCAACAGTGCCAACTGTAAGAACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CCA 90 bp TGCAGAAGTAGAAGTTGGACGGGCAGACCTGAGGGTTCTTACAGTTaGCACTGTTGGTGCACACGTGACATCGAAGTGCCCAGGCTGGGC +
Preference number: 5 (lower is better)
Translates to: CRSRSWTGRPEGSYS*HCWCTRDIEVPRLG
Trigger: GCCCAGCCTGGGCACTTCGATGTCACGTGTGCACCAACAGTGCCAACTGTAAGAACCCTCAGGTCTGCCCGTCCAACTTCTACTTCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS-3UTR CAA 90 bp TATGTCATCAGCTCTTGGTGCCCACCAAGACCCAGCCCCAGCCTTGAAGGGTATGTCAGTCTGGCAGCATaGTGTGACCTCGGAACCACT +
Preference number: 5 (lower is better)
Translates to: YVISSWCPPRPSPSLEGYVSLAA*CDLGTT
Trigger: AGTGGTTCCGAGGTCACACAATGCTGCCAGACTGAC...ATACCCTTCAAGGCTGGGGCTGGGTCTTGGTGGGCACCAAGAGCTGATGACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS TCA 90 bp CACACTCTTTCCTCACCAGGTTCCCATTCAGAGGCTCCACTGAGGTaGCGGTTTTGCAGAAGTAGAAGTTGGACGGGCAGACCTGAGGGT +
Preference number: 5 (lower is better)
Translates to: HTLSSPGSHSEAPLR*RFCRSRSWTGRPEG
Trigger: ACCCTCAGGTCTGCCCGTCCAACTTCTACTTCTGCAAAACCGTCACCTCAGTGGAGCCTCTGAATGGGAACCTGGTGAGGAAAGAGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS TCA 90 bp GTTTGCACACTCTTTCCTCACCAGGTTCCCATTCAGAGGCTCCACTaGGGTGACGGTTTTGCAGAAGTAGAAGTTGGACGGGCAGACCTG +
Preference number: 5 (lower is better)
Translates to: VCTLFPHQVPIQRLH*GDGFAEVEVGRADL
Trigger: CAGGTCTGCCCGTCCAACTTCTACTTCTGCAAAACCGTCACCTCAGTGGAGCCTCTGAATGGGAACCTGGTGAGGAAAGAGTGTGCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CAA 90 bp CTGCTGAGCAGGGCATGTCCAGGTGCAGCGCTGACCAGCCTCTCGTaGCATAGGTCAGTCTGGCAGCATTGTGTGACCTCGGAACCACTG +
Preference number: 6 (lower is better)
Translates to: LLSRACPGAALTSLS*HRSVWQHCVTSEPL
Trigger: CAGTGGTTCCGAGGTCACACAATGCTGCCAGACTGACCTATGCAACGAGAGGCTGGTCAGCGCTGCACCTGGACATGCCCTGCTCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CCA 72 bp ACGGGCAGACCTGAGGGTTCTTACAGTTGGCACTGTTaGTGCACACGTGACATCGAAGTGCCCAGGCTGGGC +
Preference number: 6 (lower is better)
Translates to: TGRPEGSYSWHC*CTRDIEVPRLG
Trigger: GCCCAGCCTGGGCACTTCGATGTCACGTGTGCACCAACAGTGCCAACTGTAAGAACCCTCAGGTCTGCCCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS GCA 72 bp ACAGTTGGCACTGTTGGTGCACACGTGACATCGAAGTaGCCAGGCTGGGCTAGTGGCCACAGCCAAGACAAG +
Preference number: 6 (lower is better)
Translates to: TVGTVGAHVTSK*PGWASGHSQDK
Trigger: CTTGTCTTGGCTGTGGCCACTAGCCCAGCCTGGGCACTTCGATGTCACGTGTGCACCAACAGTGCCAACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CCA 72 bp GCAGCGCTGACCAGCCTCTCGTTGCATAGGTCAGTCTaGCAGCATTGTGTGACCTCGGAACCACTGCTGACA +
Preference number: 6 (lower is better)
Translates to: AALTSLSLHRSV*QHCVTSEPLLT
Trigger: TGTCAGCAGTGGTTCCGAGGTCACACAATGCTGCCAGACTGACCTATGCAACGAGAGGCTGGTCAGCGCTGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS TCA 72 bp GCTGACATGGCCCTGCTGGCTGTAGTCGGAGGTGCATaGGTTTGCACACTCTTTCCTCACCAGGTTCCCATT +
Preference number: 6 (lower is better)
Translates to: ADMALLAVVGGA*VCTLFPHQVPI
Trigger: AATGGGAACCTGGTGAGGAAAGAGTGTGCAAACTCATGCACCTCCGACTACAGCCAGCAGGGCCATGTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CCA 72 bp AGAAGTTGGACGGGCAGACCTGAGGGTTCTTACAGTTaGCACTGTTGGTGCACACGTGACATCGAAGTGCCC +
Preference number: 6 (lower is better)
Translates to: RSWTGRPEGSYS*HCWCTRDIEVP
Trigger: GGGCACTTCGATGTCACGTGTGCACCAACAGTGCCAACTGTAAGAACCCTCAGGTCTGCCCGTCCAACTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS CAA 72 bp CATGGCCCTGCTGGCTGTAGTCGGAGGTGCATGAGTTaGCACACTCTTTCCTCACCAGGTTCCCATTCAGAG +
Preference number: 6 (lower is better)
Translates to: HGPAGCSRRCMS*HTLSSPGSHSE
Trigger: CTCTGAATGGGAACCTGGTGAGGAAAGAGTGTGCAAACTCATGCACCTCCGACTACAGCCAGCAGGGCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8
CDS TCA 72 bp TCCTCACCAGGTTCCCATTCAGAGGCTCCACTGAGGTaGCGGTTTTGCAGAAGTAGAAGTTGGACGGGCAGA +
Preference number: 6 (lower is better)
Translates to: SSPGSHSEAPLR*RFCRSRSWTGR
Trigger: TCTGCCCGTCCAACTTCTACTTCTGCAAAACCGTCACCTCAGTGGAGCCTCTGAATGGGAACCTGGTGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040404.8