Pregenerated sensors for LY6C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079018Ensembl transcript IDs: ENSMUST00000065408.16, ENSMUST00000179762.8, ENSMUST00000185200.7, ENSMUST00000185372.2, ENSMUST00000187347.7, ENSMUST00000188845.7, ENSMUST00000191216.7
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGTCTTTAGTTTCCTTCTTTGAGAGTCTGCAAGAAATCAGGGAGTaGCTCACTTCTTATGCAGGGGCCACAGAGCATCCCCATATCTGG | + |
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Preference number: 1 (lower is better) Translates to: GSLVSFFESLQEIRE*LTSYAGATEHPHIW Trigger: CCAGATATGGGGATGCTCTGTGGCCCCTGCATAAGAAGTGAGTCACTCCCTGATTTCTTGCAGACTCTCAAAGAAGGAAACTAAAGACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185200.7 |
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| 3UTR GCA 90 bp | TTATGTGTGGATGGTGATACTATAATACCTTGGAATACTGCCTGTTaGATGTGCTGGCCACATGCCTCCAGGGCCAAGAATAGAAATCCA | + |
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Preference number: 1 (lower is better) Translates to: LCVDGDTIIPWNTAC*MCWPHASRAKNRNP Trigger: TGGATTTCTATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATCACCATCCACACATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR CCA 90 bp | GATGGTGATACTATAATACCTTGGAATACTGCCTGTTGCATGTGCTaGCCACATGCCTCCAGGGCCAAGAATAGAAATCCACAACTAAAT | + |
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Preference number: 1 (lower is better) Translates to: DGDTIIPWNTACCMC*PHASRAKNRNPQLN Trigger: ATTTAGTTGTGGATTTCTATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATCACCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR GCA 90 bp | GACTCAACAGGGGTCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGATACTGCCTGTTGCATGTaGTGGCCACATGCCTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: DSTGVIDRHTWEPCRTPDTACCM*WPHASR Trigger: CCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGT...ATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CCA 90 bp | TCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGATACTTATGTGTGGAGCCTGTTGCATGTGCTaGCCACATGCCTCCAGGGCC | + |
|
Preference number: 2 (lower is better) Translates to: SLTGIHGNPAGPQILMCGACCMC*PHASRA Trigger: GGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGC...TCCACACATAAGTATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CCA 90 bp | GACTCACTTCTTATGCAGGGGCCACAGAGCATCCCCATATCTGGGCAACATGCCTGCAATCCTAGAACTTaGAAGACCGAGGCAGGAGCA | + |
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Preference number: 2 (lower is better) Translates to: DSLLMQGPQSIPISGQHACNPRT*KTEAGA Trigger: TGCTCCTGCCTCGGTCTTCCAAGTTCTAGGATTGCA...GGCATGTTGCCCAGATATGGGGATGCTCTGTGGCCCCTGCATAAGAAGTGAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185200.7 |
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| 3UTR-3UTR CCA 90 bp | TCAACAGGGGTCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGATACTGACTCCAGGAAAGAGTaGTTGCACATGAAGATAAAA | + |
|
Preference number: 2 (lower is better) Translates to: STGVIDRHTWEPCRTPDTDSRKE*LHMKIK Trigger: TTTTATCTTCATGTGCAACCACTCTTTCCTGGAGTC...AGTATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGCCTGTTGCATGTGCTGGCCACATGCCTCCAGGGCCAAGAATAGAAATCCAGACTCCAGGAAAGAGTaGTTGCACATGAAGATAAAA | + |
|
Preference number: 2 (lower is better) Translates to: TACCMCWPHASRAKNRNPDSRKE*LHMKIK Trigger: TTTTATCTTCATGTGCAACCACTCTTTCCTGGAGTC...TGGATTTCTATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CCA 90 bp | GATACTATAATACCTTGGAATACTGCCTGTTGCATGTGCTGGCCACATGCCTCCAAATCCACAACTAAATaGCATTGCAAGAAGTACAGA | + |
|
Preference number: 2 (lower is better) Translates to: DTIIPWNTACCMCWPHASKSTTK*HCKKYR Trigger: TCTGTACTTCTTGCAATGCCATTTAGTTGTGGATTT...GGAGGCATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR CAA 90 bp | TGTTCCACACACTATCCCCACATTGGACCTTCTATAACATATAATTaGTCACTAGAGGACTCCAGGAAAGAGTGGTTGCACATGAAGATA | + |
|
Preference number: 2 (lower is better) Translates to: CSTHYPHIGPSITYN*SLEDSRKEWLHMKI Trigger: TATCTTCATGTGCAACCACTCTTTCCTGGAGTCCTCTAGTGACAAATTATATGTTATAGAAGGTCCAATGTGGGGATAGTGTGTGGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CAA 90 bp | TGGACTCAACAGGGGTCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGTCCAGGAAAGAGTGGTaGCACATGAAGATAAAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: WTQQGSLTGIHGNPAGPQSRKEW*HMKIKG Trigger: TCCTTTTATCTTCATGTGCAACCACTCTTTCCTGGA...CTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGAGTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CAA 90 bp | TCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGATACTTATGTGTGGATTGGAATACTGCCTGTaGCATGTGCTGGCCACATGC | + |
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Preference number: 3 (lower is better) Translates to: SLTGIHGNPAGPQILMCGLEYCL*HVLATC Trigger: GCATGTGGCCAGCACATGCAACAGGCAGTATTCCAA...TCCACACATAAGTATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR-3UTR CAA 90 bp | GACTCAACAGGGGTCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGATTCCAGGAAAGAGTGGTaGCACATGAAGATAAAAGGA | + |
|
Preference number: 3 (lower is better) Translates to: DSTGVIDRHTWEPCRTPDSRKEW*HMKIKG Trigger: TCCTTTTATCTTCATGTGCAACCACTCTTTCCTGGA...ATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR TCA 72 bp | GTTTCCTTCTTTGAGAGTCTGCAAGAAATCAGGGAGTaGCTCACTTCTTATGCAGGGGCCACAGAGCATCCC | + |
|
Preference number: 3 (lower is better) Translates to: VSFFESLQEIRE*LTSYAGATEHP Trigger: GGGATGCTCTGTGGCCCCTGCATAAGAAGTGAGTCACTCCCTGATTTCTTGCAGACTCTCAAAGAAGGAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185200.7 |
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| 3UTR GCA 72 bp | TCAACAGGGGTCATTGACAGGCATACATGGGAACCCTaGAGGACCCCAGATACTTATGTGTGGATGGTGATA | + |
|
Preference number: 3 (lower is better) Translates to: STGVIDRHTWEP*RTPDTYVWMVI Trigger: TATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR TCA 72 bp | AGGCCTGGATGTCCCAGAGTTGTCTGTAAGGCATGTTaGAGTCAGACTTGCAATCCTAGAACTTGGAAGACC | + |
|
Preference number: 3 (lower is better) Translates to: RPGCPRVVCKAC*SQTCNPRTWKT Trigger: GGTCTTCCAAGTTCTAGGATTGCAAGTCTGACTTCAACATGCCTTACAGACAACTCTGGGACATCCAGGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185200.7 |
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| 3UTR GCA 72 bp | GATGGTGATACTATAATACCTTGGAATACTGCCTGTTaGATGTGCTGGCCACATGCCTCCAGGGCCAAGAAT | + |
|
Preference number: 3 (lower is better) Translates to: DGDTIIPWNTAC*MCWPHASRAKN Trigger: ATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATCACCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR CCA 72 bp | ACTATAATACCTTGGAATACTGCCTGTTGCATGTGCTaGCCACATGCCTCCAGGGCCAAGAATAGAAATCCA | + |
|
Preference number: 3 (lower is better) Translates to: TIIPWNTACCMC*PHASRAKNRNP Trigger: TGGATTTCTATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| 3UTR TCA 72 bp | AACCCTGCAGGACCCCAGATACTTATGTGTGGATGGTaGTACTATAATACCTTGGAATACTGCCTGTTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: NPAGPQILMCGW*YYNTLEYCLLH Trigger: ATGCAACAGGCAGTATTCCAAGGTATTATAGTATCACCATCCACACATAAGTATCTGGGGTCCTGCAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR TCA 90 bp | TGGACTCAACAGGGGTCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGGGTCTGCAGGACGACTaGGCTCAGGCTGAACAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: WTQQGSLTGIHGNPAGPQGLQDD*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCGTCCTGCAGACC...CTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGAGTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR CCA 90 bp | ACTGCCTGTTGCATGTGCTGGCCACATGCCTCCAGGGCCAAGAATAGAAATCCAGTTAGGATCCCTGATTaGCACACCAGCAGGGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: TACCMCWPHASRAKNRNPVRIPD*HTSRAE Trigger: TTCTGCCCTGCTGGTGTGCCAATCAGGGATCCTAAC...TGGATTTCTATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCAACAGGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR CCA 90 bp | TCAACAGGGGTCATTGACAGGCATACATGGGAACCCTGCAGGACCCCAGATACTAGGTGCTACCTGCAGTaGGAACTGCTGCATTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: STGVIDRHTWEPCRTPDTRCYLQ*ELLHCR Trigger: TCTGCAATGCAGCAGTTCCCACTGCAGGTAGCACCT...AGTATCTGGGGTCCTGCAGGGTTCCCATGTATGCCTGTCAATGACCCCTGTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR GCA 90 bp | GATACTATAATACCTTGGAATACTGCCTGTTGCATGTGCTGGCCACATGCCTCCCTGCCATGGTCCAGGTaGTACCTGCAGTGGGAACTG | + |
|
Preference number: 4 (lower is better) Translates to: DTIIPWNTACCMCWPHASLPWSR*YLQWEL Trigger: CAGTTCCCACTGCAGGTAGCACCTGGACCATGGCAG...GGAGGCATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR CCA 90 bp | GATGGTGATACTATAATACCTTGGAATACTGCCTGTTGCATGTGCTGGCCACATGAAGCACCCCTGCCATaGTCCAGGTGCTACCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: DGDTIIPWNTACCMCWPHEAPLP*SRCYLQ Trigger: CTGCAGGTAGCACCTGGACCATGGCAGGGGTGCTTC...ATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATCACCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR GCA 90 bp | GATGGTGATACTATAATACCTTGGAATACTGCCTGTTGCATGTGCTGGCCACATGAACAGAAGCACCCCTaGCATGGTCCAGGTGCTACC | + |
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Preference number: 4 (lower is better) Translates to: DGDTIIPWNTACCMCWPHEQKHP*HGPGAT Trigger: GGTAGCACCTGGACCATGGCAGGGGTGCTTCTGTTC...ATGTGGCCAGCACATGCAACAGGCAGTATTCCAAGGTATTATAGTATCACCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR CCA 90 bp | TGCATGTGCTGGCCACATGCCTCCAGGGCCAAGAATAGAAATCCACAACTAAATAGGTGCTACCTGCAGTaGGAACTGCTGCATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: CMCWPHASRAKNRNPQLNRCYLQ*ELLHCR Trigger: TCTGCAATGCAGCAGTTCCCACTGCAGGTAGCACCT...ATTTAGTTGTGGATTTCTATTCTTGGCCCTGGAGGCATGTGGCCAGCACATGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR CCA 90 bp | TGGATTGAGGTGAATGTAATGACTAATGGTGTCAGGGTTGGCCTGGTCCAAAGAACACGCATGAGGCCCTaGATTCCTGCAGTGGGAACT | + |
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Preference number: 4 (lower is better) Translates to: WIEVNVMTNGVRVGLVQRTRMRP*IPAVGT Trigger: AGTTCCCACTGCAGGAATCCAGGGCCTCATGCGTGT...TCTTTGGACCAGGCCAACCCTGACACCATTAGTCATTACATTCACCTCAATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS-3UTR GCA 90 bp | AACTGGATTGAGGTGAATGTAATGACTAATGGTGTCAGGGTTGGCCTGGTCCAATCCTGCAGTGGGAACTaGTGCATTGCAGAGGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: NWIEVNVMTNGVRVGLVQSCSGN*CIAEVF Trigger: GAAGACCTCTGCAATGCAGCAGTTCCCACTGCAGGA...TTGGACCAGGCCAACCCTGACACCATTAGTCATTACATTCACCTCAATCCAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS-3UTR CCA 90 bp | AACAACTGGATTGAGGTGAATGTAATGACTAATGGTGTCAGGGTTGGCCTGGTCCCTGGATTCCTGCAGTaGGAACTGCTGCATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: NNWIEVNVMTNGVRVGLVPGFLQ*ELLHCR Trigger: TCTGCAATGCAGCAGTTCCCACTGCAGGAATCCAGG...GACCAGGCCAACCCTGACACCATTAGTCATTACATTCACCTCAATCCAGTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS-3UTR GCA 90 bp | GTAATGACTAATGGTGTCAGGGTTGGCCTGGTCCAAAGATTAGATAGTCACTTAGAGGCCCTGGATTCCTaGAGTGGGAACTGCTGCATT | + |
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Preference number: 4 (lower is better) Translates to: VMTNGVRVGLVQRLDSHLEALDS*SGNCCI Trigger: AATGCAGCAGTTCCCACTGCAGGAATCCAGGGCCTC...TAAGTGACTATCTAATCTTTGGACCAGGCCAACCCTGACACCATTAGTCATTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS-3UTR GCA 90 bp | GTAATGACTAATGGTGTCAGGGTTGGCCTGGTCCAAAGATTAGATAGTCACTTAGGGTCTCCTTGGAAGTaGCCTGTGCTGATGTGTGCT | + |
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Preference number: 4 (lower is better) Translates to: VMTNGVRVGLVQRLDSHLGSPWK*PVLMCA Trigger: AGCACACATCAGCACAGGGCACTTCCAAGGAGACCC...TAAGTGACTATCTAATCTTTGGACCAGGCCAACCCTGACACCATTAGTCATTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS-3UTR TCA 90 bp | ATTGGACCTTCTATAACATATAATTTGTCACTAGAGGACTCCAGGAAAGAGTGGGGTCTGCAGGACGACTaGGCTCAGGCTGAACAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: IGPSITYNLSLEDSRKEWGLQDD*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCGTCCTGCAGACC...CCACTCTTTCCTGGAGTCCTCTAGTGACAAATTATATGTTATAGAAGGTCCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR TCA 90 bp | GTAATGACTAATGGTGTCAGGGTTGGCCTGGTCCAAAGATTAGATAGTCACTTAGGAAGTGCCCTGTGCTaGTGTGTGCTTGATGATGCT | + |
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Preference number: 4 (lower is better) Translates to: VMTNGVRVGLVQRLDSHLGSALC*CVLDDA Trigger: AGCATCATCAAGCACACATCAGCACAGGGCACTTCC...TAAGTGACTATCTAATCTTTGGACCAGGCCAACCCTGACACCATTAGTCATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS-3UTR CCA 90 bp | GCTTCATCCATAAGATGGTTTCTTGTTGACTTAGAAACAATGCTCAAGATAATGCAAGCAGGGTCTCCTTaGAAGTGCCCTGTGCTGATG | + |
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Preference number: 4 (lower is better) Translates to: ASSIRWFLVDLETMLKIMQAGSP*KCPVLM Trigger: CATCAGCACAGGGCACTTCCAAGGAGACCCTGCTTG...CATTATCTTGAGCATTGTTTCTAAGTCAACAAGAAACCATCTTATGGATGAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| 3UTR CAA 72 bp | CACTATCCCCACATTGGACCTTCTATAACATATAATTaGTCACTAGAGGACTCCAGGAAAGAGTGGTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: HYPHIGPSITYN*SLEDSRKEWLH Trigger: GTGCAACCACTCTTTCCTGGAGTCCTCTAGTGACAAATTATATGTTATAGAAGGTCCAATGTGGGGATAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 |
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| CDS-3UTR CCA 90 bp | GCTTCATCCATAAGATGGTTTCTTGTTGACTTAGAAACAATGCTCAAGATAATGGTTAGGATCCCTGATTaGCACACCAGCAGGGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: ASSIRWFLVDLETMLKIMVRIPD*HTSRAE Trigger: TTCTGCCCTGCTGGTGTGCCAATCAGGGATCCTAAC...CATTATCTTGAGCATTGTTTCTAAGTCAACAAGAAACCATCTTATGGATGAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS GCA 90 bp | CAGAAGCACCCCTGCCATGGTCCAGGTGCTACCTGCAGTGGGAACTaGTGCATTGCAGAGGTCTTCGCTGCAACAGGAAGTCCTCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: QKHPCHGPGATCSGN*CIAEVFAATGSPLP Trigger: AGGGAGAGGACTTCCTGTTGCAGCGAAGACCTCTGCAATGCAGCAGTTCCCACTGCAGGTAGCACCTGGACCATGGCAGGGGTGCTTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 ENSMUST00000187347.7 |
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| CDS GCA 90 bp | GCTCAGGCTGAACAGAAGCACCCCTGCCATGGTCCAGGTGCTACCTaGAGTGGGAACTGCTGCATTGCAGAGGTCTTCGCTGCAACAGGA | + |
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Preference number: 5 (lower is better) Translates to: AQAEQKHPCHGPGAT*SGNCCIAEVFAATG Trigger: TCCTGTTGCAGCGAAGACCTCTGCAATGCAGCAGTTCCCACTGCAGGTAGCACCTGGACCATGGCAGGGGTGCTTCTGTTCAGCCTGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 ENSMUST00000187347.7 |
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| CDS GCA 90 bp | AAGCACCCCTGCCATGGTCCAGGTGCTACCTGCAGTGGGAACTGCTaGATTGCAGAGGTCTTCGCTGCAACAGGAAGTCCTCTCCCTGAT | + |
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Preference number: 5 (lower is better) Translates to: KHPCHGPGATCSGNC*IAEVFAATGSPLPD Trigger: ATCAGGGAGAGGACTTCCTGTTGCAGCGAAGACCTCTGCAATGCAGCAGTTCCCACTGCAGGTAGCACCTGGACCATGGCAGGGGTGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 ENSMUST00000187347.7 |
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| CDS GCA 90 bp | CCCACCACAAGCAGGGTCTCCTTGGAAGTGCCCTGTGCTGATGTGTaGTTGATGATGCTTCTTCACACGCATGAGGCCCTGGATTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: PTTSRVSLEVPCADV*LMMLLHTHEALDSC Trigger: GCAGGAATCCAGGGCCTCATGCGTGTGAAGAAGCATCATCAAGCACACATCAGCACAGGGCACTTCCAAGGAGACCCTGCTTGTGGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CCA 90 bp | TCCATCAGAGGCGCGGCAGGTAACTGCTGGGCAGGAAGTCTCAATTaGCACTCCATAGCACTCGTAGCACTGCAGTCCCTGAGCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SIRGAAGNCWAGSLN*HSIALVALQSLSSF Trigger: GAAAGAGCTCAGGGACTGCAGTGCTACGAGTGCTATGGAGTGCCAATTGAGACTTCCTGCCCAGCAGTTACCTGCCGCGCCTCTGATGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000065408.16 ENSMUST00000179762.8 ENSMUST00000185200.7 ENSMUST00000185372.2 ENSMUST00000187347.7 ENSMUST00000188845.7 ENSMUST00000191216.7 |
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| CDS GCA 72 bp | CACACGCATGAGGCCCTGGATTCCTGCAGTGGGAACTaGTGCATTGCAGAGGTCTTCGCTGCAACAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: HTHEALDSCSGN*CIAEVFAATGS Trigger: ACTTCCTGTTGCAGCGAAGACCTCTGCAATGCAGCAGTTCCCACTGCAGGAATCCAGGGCCTCATGCGTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CAA 72 bp | ATGAGGCCCTGGATTCCTGCAGTGGGAACTGCTGCATaGCAGAGGTCTTCGCTGCAACAGGAAGTCCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: MRPWIPAVGTAA*QRSSLQQEVLS Trigger: GGAGAGGACTTCCTGTTGCAGCGAAGACCTCTGCAATGCAGCAGTTCCCACTGCAGGAATCCAGGGCCTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CAA 72 bp | CATCTCCTGGGCTTCCCCACCACAAGCAGGGTCTCCTaGGAAGTGCCCTGTGCTGATGTGTGCTTGATGATG | + |
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Preference number: 6 (lower is better) Translates to: HLLGFPTTSRVS*EVPCADVCLMM Trigger: CATCATCAAGCACACATCAGCACAGGGCACTTCCAAGGAGACCCTGCTTGTGGTGGGGAAGCCCAGGAGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS GCA 72 bp | AGCAGGGTCTCCTTGGAAGTGCCCTGTGCTGATGTGTaGTTGATGATGCTTCTTCACACGCATGAGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SRVSLEVPCADV*LMMLLHTHEAL Trigger: CAGGGCCTCATGCGTGTGAAGAAGCATCATCAAGCACACATCAGCACAGGGCACTTCCAAGGAGACCCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CAA 90 bp | ACCACAAGCAGGGTCTCCTTGGAAGTGCCCTGTGCTGATGTGTGCTaGATGATGCTTCTTCACACGCATGAGGCCCTGGATTCCTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: TTSRVSLEVPCADVC*MMLLHTHEALDSCS Trigger: ACTGCAGGAATCCAGGGCCTCATGCGTGTGAAGAAGCATCATCAAGCACACATCAGCACAGGGCACTTCCAAGGAGACCCTGCTTGTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CAA 72 bp | AGGGTCTCCTTGGAAGTGCCCTGTGCTGATGTGTGCTaGATGATGCTTCTTCACACGCATGAGGCCCTGGAT | + |
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Preference number: 6 (lower is better) Translates to: RVSLEVPCADVC*MMLLHTHEALD Trigger: ATCCAGGGCCTCATGCGTGTGAAGAAGCATCATCAAGCACACATCAGCACAGGGCACTTCCAAGGAGACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CAA 90 bp | TTGATTGCTCATCTCCTGGGCTTCCCCACCACAAGCAGGGTCTCCTaGGAAGTGCCCTGTGCTGATGTGTGCTTGATGATGCTTCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: LIAHLLGFPTTSRVS*EVPCADVCLMMLLH Trigger: GTGAAGAAGCATCATCAAGCACACATCAGCACAGGGCACTTCCAAGGAGACCCTGCTTGTGGTGGGGAAGCCCAGGAGATGAGCAATCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188845.7 |
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| CDS CAA 90 bp | GTCTATCCTGAGGTTAGAGTGAGACCCCTCAATCAATTCTATGTTTaGAGCAATGCAGAATCCATCAGAGGCGCGGCAGGTAACTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: VYPEVRVRPLNQFYV*SNAESIRGAAGNCW Trigger: CCAGCAGTTACCTGCCGCGCCTCTGATGGATTCTGCATTGCTCAAAACATAGAATTGATTGAGGGGTCTCACTCTAACCTCAGGATAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000185200.7 ENSMUST00000185372.2 |
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| CDS CAA 72 bp | GAGGTTAGAGTGAGACCCCTCAATCAATTCTATGTTTaGAGCAATGCAGAATCCATCAGAGGCGCGGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: EVRVRPLNQFYV*SNAESIRGAAG Trigger: ACCTGCCGCGCCTCTGATGGATTCTGCATTGCTCAAAACATAGAATTGATTGAGGGGTCTCACTCTAACCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000185200.7 ENSMUST00000185372.2 |
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