Pregenerated sensors for LY6A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075602Ensembl transcript IDs: ENSMUST00000023248.13, ENSMUST00000186526.7, ENSMUST00000187171.2, ENSMUST00000187994.7, ENSMUST00000189068.7
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATGGTGATAGCATAATACCTTGGAATTCTGCCTCTTCACTGTGCTaGCTGTGTGCCTCCAGGGTCATGAGCAGCAATCCACAACAAAAT | + |
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Preference number: 1 (lower is better) Translates to: DGDSIIPWNSASSLC*LCASRVMSSNPQQN Trigger: ATTTTGTTGTGGATTGCTGCTCATGACCCTGGAGGCACACAGCCAGCACAGTGAAGAGGCAGAATTCCAAGGTATTATGCTATCACCATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CCA 90 bp | TTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCGCCTCTTCACTGTGCTaGCTGTGTGCCTCCAGGGTC | + |
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Preference number: 2 (lower is better) Translates to: LLDSTGGHSGYMWEHCRTASSLC*LCASRV Trigger: GACCCTGGAGGCACACAGCCAGCACAGTGAAGAGGC...GGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR GCA 90 bp | ACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTTATTCTGCCTCTTCACTGTaGTGGCTGTGTGCCTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: TGGHSGYMWEHCRTPDTYSASSL*WLCASR Trigger: CCTGGAGGCACACAGCCAGCACAGTGAAGAGGCAGA...ATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR GCA 90 bp | TTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCTCTGCCTCTTCACTGTaGTGGCTGTGTGCCTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: LLDSTGGHSGYMWEHCRTSASSL*WLCASR Trigger: CCTGGAGGCACACAGCCAGCACAGTGAAGAGGCAGA...GGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR GCA 90 bp | ATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAATACCTTGGAATTCTaGCTCTTCACTGTGCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: IGLNRGTFRIHVGTLQDPNTLEF*LFTVLA Trigger: AGCCAGCACAGTGAAGAGGCAGAATTCCAAGGTATT...GGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CCA 90 bp | GGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTTATGTGATAAAAGGACAAGGGTaGAGGTCATTGGGAGGACCA | + |
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Preference number: 2 (lower is better) Translates to: GGHSGYMWEHCRTPDTYVIKGQG*RSLGGP Trigger: TGGTCCTCCCAATGACCTCCACCCTTGTCCTTTTAT...CACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR CAA 90 bp | ATGAGCAGCAATCCACAACAAAATGACATTCTAGGAAGTACAGACTaGAAAGCCCTAGAGAGGATTAGAGCACCTACCTACCCAGCAGGG | + |
|
Preference number: 2 (lower is better) Translates to: MSSNPQQNDILGSTD*KALERIRAPTYPAG Trigger: CCCTGCTGGGTAGGTAGGTGCTCTAATCCTCTCTAGGGCTTTCAAGTCTGTACTTCCTAGAATGTCATTTTGTTGTGGATTGCTGCTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR GCA 90 bp | GGGTTTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGAATACCTTGGAATTCTaGCTCTTCACTGTGCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: GFIGLNRGTFRIHVGTLQNTLEF*LFTVLA Trigger: AGCCAGCACAGTGAAGAGGCAGAATTCCAAGGTATT...CTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAAACCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CCA 90 bp | GGGGCTATAAAGGCAAAACATGGTATTTCACACACTACTCCCACCTTGGAGCTTATAAAAGGACAAGGGTaGAGGTCATTGGGAGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: GAIKAKHGISHTTPTLELIKGQG*RSLGGP Trigger: TGGTCCTCCCAATGACCTCCACCCTTGTCCTTTTAT...AAGCTCCAAGGTGGGAGTAGTGTGTGAAATACCATGTTTTGCCTTTATAGCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CCA 90 bp | CCTACCTACCCAGCAGGGGCTATAAAGGCAAAACATGGTATTTCACACACTACTATAAAAGGACAAGGGTaGAGGTCATTGGGAGGACCA | + |
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Preference number: 2 (lower is better) Translates to: PTYPAGAIKAKHGISHTTIKGQG*RSLGGP Trigger: TGGTCCTCCCAATGACCTCCACCCTTGTCCTTTTAT...AGTAGTGTGTGAAATACCATGTTTTGCCTTTATAGCCCCTGCTGGGTAGGTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR TCA 90 bp | GGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTTATGTGCAATCCACAACAAAATaGCATTCTAGGAAGTACAGA | + |
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Preference number: 2 (lower is better) Translates to: GGHSGYMWEHCRTPDTYVQSTTK*HSRKYR Trigger: TCTGTACTTCCTAGAATGTCATTTTGTTGTGGATTG...CACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR CAA 90 bp | TTTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATaGCAGGACCCCAGATACTTATGTGTGGATGGTGATAGCATAATA | + |
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Preference number: 2 (lower is better) Translates to: FIGLNRGTFRIHVGT*QDPRYLCVDGDSII Trigger: TATTATGCTATCACCATCCACACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CCA 90 bp | AATCCACAACAAAATGACATTCTAGGAAGTACAGACTTGAAAGCCCTAGAGAGGATAAAAGGACAAGGGTaGAGGTCATTGGGAGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: NPQQNDILGSTDLKALERIKGQG*RSLGGP Trigger: TGGTCCTCCCAATGACCTCCACCCTTGTCCTTTTAT...CCTCTCTAGGGCTTTCAAGTCTGTACTTCCTAGAATGTCATTTTGTTGTGGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CCA 90 bp | CAAAATGACATTCTAGGAAGTACAGACTTGAAAGCCCTAGAGAGGATTAGAGCAATAAAAGGACAAGGGTaGAGGTCATTGGGAGGACCA | + |
|
Preference number: 2 (lower is better) Translates to: QNDILGSTDLKALERIRAIKGQG*RSLGGP Trigger: TGGTCCTCCCAATGACCTCCACCCTTGTCCTTTTAT...TGCTCTAATCCTCTCTAGGGCTTTCAAGTCTGTACTTCCTAGAATGTCATTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CAA 90 bp | TCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTGGGCTCCAGGAAGAATaGTTGCACATGAGGATAAAA | + |
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Preference number: 3 (lower is better) Translates to: STGGHSGYMWEHCRTPDTGLQEE*LHMRIK Trigger: TTTTATCCTCATGTGCAACAATTCTTCCTGGAGCCC...AGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CAA 90 bp | TTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCGGGCTCCAGGAAGAATaGTTGCACATGAGGATAAAA | + |
|
Preference number: 3 (lower is better) Translates to: LLDSTGGHSGYMWEHCRTGLQEE*LHMRIK Trigger: TTTTATCCTCATGTGCAACAATTCTTCCTGGAGCCC...GGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR GCA 72 bp | TCAACAGGGGGACATTCAGGATACATGTGGGAACATTaGAGGACCCCAGATACTTATGTGTGGATGGTGATA | + |
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Preference number: 3 (lower is better) Translates to: STGGHSGYMWEH*RTPDTYVWMVI Trigger: TATCACCATCCACACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR CCA 72 bp | TTATTGGACTCAACAGGGGGACATTCAGGATACATGTaGGAACATTGCAGGACCCCAGATACTTATGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: LLDSTGGHSGYM*EHCRTPDTYVW Trigger: CCACACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR-3UTR CAA 90 bp | GGGGCTATAAAGGCAAAACATGGTATTTCACACACTACTCCCACCTTGGAGCTTGGGCTCCAGGAAGAATaGTTGCACATGAGGATAAAA | + |
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Preference number: 3 (lower is better) Translates to: GAIKAKHGISHTTPTLELGLQEE*LHMRIK Trigger: TTTTATCCTCATGTGCAACAATTCTTCCTGGAGCCC...AAGCTCCAAGGTGGGAGTAGTGTGTGAAATACCATGTTTTGCCTTTATAGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| 3UTR CCA 72 bp | AGATACTTATGTGTGGATGGTGATAGCATAATACCTTaGAATTCTGCCTCTTCACTGTGCTGGCTGTGTGCC | + |
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Preference number: 3 (lower is better) Translates to: RYLCVDGDSIIP*NSASSLCWLCA Trigger: GGCACACAGCCAGCACAGTGAAGAGGCAGAATTCCAAGGTATTATGCTATCACCATCCACACATAAGTATCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR TCA 90 bp | GACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATGGTCTGCAGGAGGACTaGGCTCAGGCTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: DSTGGHSGYMWEHCRTPDGLQED*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCCTCCTGCAGACC...ATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR TCA 90 bp | ATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCGGTCTGCAGGAGGACTaGGCTCAGGCTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: IGLNRGTFRIHVGTLQDPGLQED*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCCTCCTGCAGACC...GGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR GCA 90 bp | ATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCCCATGGTCCAGGTGCTaGCTCCATTGGGAACTGCTA | + |
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Preference number: 4 (lower is better) Translates to: IGLNRGTFRIHVGTLQDPPWSRC*LHWELL Trigger: TAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGG...GGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAAT 53% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR TCA 90 bp | ACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTTATGGTCTGCAGGAGGACTaGGCTCAGGCTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: TGGHSGYMWEHCRTPDTYGLQED*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCCTCCTGCAGACC...ATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR TCA 90 bp | GAGAACAAAGGGTTTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAGGTCTGCAGGAGGACTaGGCTCAGGCTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ENKGFIGLNRGTFRIHVGGLQED*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCCTCCTGCAGACC...TCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAAACCCTTTGTTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CCA 90 bp | ATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGGTGCTGCCTCCATTaGGAACTGCTACATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: IGLNRGTFRIHVGTLQDPRCCLH*ELLHCR Trigger: TCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCT...GGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR GCA 90 bp | GCCTCCAGGGTCATGAGCAGCAATCCACAACAAAATGACATTCTAGGAAGTACACCATGGTCCAGGTGCTaGCTCCATTGGGAACTGCTA | + |
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Preference number: 4 (lower is better) Translates to: ASRVMSSNPQQNDILGSTPWSRC*LHWELL Trigger: TAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGG...TGTACTTCCTAGAATGTCATTTTGTTGTGGATTGCTGCTCATGACCCTGGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR TCA 90 bp | GCTATAAAGGCAAAACATGGTATTTCACACACTACTCCCACCTTGGAGCTTCTAGGTCTGCAGGAGGACTaGGCTCAGGCTGAACAGAAG | + |
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Preference number: 4 (lower is better) Translates to: AIKAKHGISHTTPTLELLGLQED*AQAEQK Trigger: CTTCTGTTCAGCCTGAGCTCAGTCCTCCTGCAGACC...TAGAAGCTCCAAGGTGGGAGTAGTGTGTGAAATACCATGTTTTGCCTTTATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR GCA 90 bp | TCCAGGGTCATGAGCAGCAATCCACAACAAAATGACATTCTAGGAAGTACAGACCCATGGTCCAGGTGCTaGCTCCATTGGGAACTGCTA | + |
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Preference number: 4 (lower is better) Translates to: SRVMSSNPQQNDILGSTDPWSRC*LHWELL Trigger: TAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGG...GTCTGTACTTCCTAGAATGTCATTTTGTTGTGGATTGCTGCTCATGACCCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CCA 90 bp | GGGTTTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGAGGTGCTGCCTCCATTaGGAACTGCTACATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GFIGLNRGTFRIHVGTLQRCCLH*ELLHCR Trigger: TCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCT...CTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAAACCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR GCA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGGCTCCAGGAAGAATCCATGGTCCAGGTGCTaGCTCCATTGGGAACTGCTA | + |
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Preference number: 4 (lower is better) Translates to: HLGASITHNSSLEGSRKNPWSRC*LHWELL Trigger: TAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGG...ATTCTTCCTGGAGCCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR GCA 90 bp | AATCCACAACAAAATGACATTCTAGGAAGTACAGACTTGAAAGCCCTAGAGAGGCCATGGTCCAGGTGCTaGCTCCATTGGGAACTGCTA | + |
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Preference number: 4 (lower is better) Translates to: NPQQNDILGSTDLKALERPWSRC*LHWELL Trigger: TAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGG...CCTCTCTAGGGCTTTCAAGTCTGTACTTCCTAGAATGTCATTTTGTTGTGGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CCA 90 bp | TCCAGGGTCATGAGCAGCAATCCACAACAAAATGACATTCTAGGAAGTACAGACAGGTGCTGCCTCCATTaGGAACTGCTACATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SRVMSSNPQQNDILGSTDRCCLH*ELLHCR Trigger: TCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCT...GTCTGTACTTCCTAGAATGTCATTTTGTTGTGGATTGCTGCTCATGACCCTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CCA 90 bp | ATTCTAGGAAGTACAGACTTGAAAGCCCTAGAGAGGATTAGAGCACCTACCTACAGGTGCTGCCTCCATTaGGAACTGCTACATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ILGSTDLKALERIRAPTYRCCLH*ELLHCR Trigger: TCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCT...GTAGGTAGGTGCTCTAATCCTCTCTAGGGCTTTCAAGTCTGTACTTCCTAGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CCA 90 bp | GCTATAAAGGCAAAACATGGTATTTCACACACTACTCCCACCTTGGAGCTTCTAAGGTGCTGCCTCCATTaGGAACTGCTACATTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: AIKAKHGISHTTPTLELLRCCLH*ELLHCR Trigger: TCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCT...TAGAAGCTCCAAGGTGGGAGTAGTGTGTGAAATACCATGTTTTGCCTTTATAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | GGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTTATGTGCAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAG | + |
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Preference number: 5 (lower is better) Translates to: GGHSGYMWEHCRTPDTYVQVLPP*GTATLQ Trigger: CTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTG...CACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | TTATTGGACTCAACAGGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LLDSTGGHSGYMWEHCRTQVLPP*GTATLQ Trigger: CTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTG...GGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCCTGTTGAGTCCAATAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023248.13 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS TCA 90 bp | TGCCTCCTGAGTAACACAGACTCCATCAGGGTAGGGGCAGGTAATTaGTGGGCAAGAAGTCTCAAATGGGACTCCATAGCACTGGTAACA | + |
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Preference number: 5 (lower is better) Translates to: CLLSNTDSIRVGAGN*WARSLKWDSIALVT Trigger: TGTTACCAGTGCTATGGAGTCCCATTTGAGACTTCTTGCCCATCAATTACCTGCCCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | GGGGGACATTCAGGATACATGTGGGAACATTGCAGGACCCCAGATACTTATGTGTTGGGAACTGCTACATaGCAGAGGTCTTCCTGGCAA | + |
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Preference number: 5 (lower is better) Translates to: GGHSGYMWEHCRTPDTYVLGTAT*QRSSWQ Trigger: TTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAA...CACATAAGTATCTGGGGTCCTGCAATGTTCCCACATGTATCCTGAATGTCCCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | GCCTCCAGGGTCATGAGCAGCAATCCACAACAAAATGACATTCTAGGAAGTACACAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAG | + |
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Preference number: 5 (lower is better) Translates to: ASRVMSSNPQQNDILGSTQVLPP*GTATLQ Trigger: CTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTG...TGTACTTCCTAGAATGTCATTTTGTTGTGGATTGCTGCTCATGACCCTGGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | CTCTTCACTGTGCTGGCTGTGTGCCTCCAGGGTCATGAGCAGCAATCCACAACACTTTACTTTCCTTGTTaGAGAATCCACAATAACTGC | + |
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Preference number: 5 (lower is better) Translates to: LFTVLAVCLQGHEQQSTTLYFPC*RIHNNC Trigger: GCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAG...TGTTGTGGATTGCTGCTCATGACCCTGGAGGCACACAGCCAGCACAGTGAAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGGCTCCAGGAAGAATCAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAG | + |
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Preference number: 5 (lower is better) Translates to: HLGASITHNSSLEGSRKNQVLPP*GTATLQ Trigger: CTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTG...ATTCTTCCTGGAGCCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | CTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGGCTCCAGGAAGAATTGTCAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAG | + |
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Preference number: 5 (lower is better) Translates to: LGASITHNSSLEGSRKNCQVLPP*GTATLQ Trigger: CTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTG...ACAATTCTTCCTGGAGCCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS GCA 90 bp | GCAAAGATTGTTCTTTACTTTCCTTGTTTGAGAATCCACAATAACTaGTGCCTCCTGAGTAACACAGACTCCATCAGGGTAGGGGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: AKIVLYFPCLRIHNN*CLLSNTDSIRVGAG Trigger: ACCTGCCCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAGAACAATCTTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | ATCACTAGAGGGCTCCAGGAAGAATTGTTGCACATGAGGATAAAAGGACAAGGGCTTTACTTTCCTTGTTaGAGAATCCACAATAACTGC | + |
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Preference number: 5 (lower is better) Translates to: ITRGLQEELLHMRIKGQGLYFPC*RIHNNC Trigger: GCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAG...CCCTTGTCCTTTTATCCTCATGTGCAACAATTCTTCCTGGAGCCCTCTAGTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | GGGGCTATAAAGGCAAAACATGGTATTTCACACACTACTCCCACCTTGGAGCTTCTTTACTTTCCTTGTTaGAGAATCCACAATAACTGC | + |
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Preference number: 5 (lower is better) Translates to: GAIKAKHGISHTTPTLELLYFPC*RIHNNC Trigger: GCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAG...AAGCTCCAAGGTGGGAGTAGTGTGTGAAATACCATGTTTTGCCTTTATAGCCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS-3UTR CAA 90 bp | CACCTTGGAGCTTCTATAACTCATAATTCATCACTAGAGGGCTCCAGGAAGAATCTTTACTTTCCTTGTTaGAGAATCCACAATAACTGC | + |
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Preference number: 5 (lower is better) Translates to: HLGASITHNSSLEGSRKNLYFPC*RIHNNC Trigger: GCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAG...ATTCTTCCTGGAGCCCTCTAGTGATGAATTATGAGTTATAGAAGCTCCAAGGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS CAA 90 bp | AGGCTGAACAGAAGCACCCCTGCCATGGTCCAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAGAGGTCTTCCTGGCAACAGGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: RLNRSTPAMVQVLPP*GTATLQRSSWQQEV Trigger: GACTTCCTGTTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGGCAGGGGTGCTTCTGTTCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS GCA 72 bp | CCCTGCCATGGTCCAGGTGCTGCCTCCATTGGGAACTaGTACATTGCAGAGGTCTTCCTGGCAACAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: PCHGPGAASIGN*YIAEVFLATGS Trigger: ACTTCCTGTTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGGCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS CAA 72 bp | AGAAGCACCCCTGCCATGGTCCAGGTGCTGCCTCCATaGGGAACTGCTACATTGCAGAGGTCTTCCTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: RSTPAMVQVLPP*GTATLQRSSWQ Trigger: TTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGGCAGGGGTGCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS CAA 90 bp | ACCCCTGCCATGGTCCAGGTGCTGCCTCCATTGGGAACTGCTACATaGCAGAGGTCTTCCTGGCAACAGGAAGTCTTCACGTTGACCTTA | + |
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Preference number: 6 (lower is better) Translates to: TPAMVQVLPPLGTAT*QRSSWQQEVFTLTL Trigger: TAAGGTCAACGTGAAGACTTCCTGTTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTGGACCATGGCAGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS GCA 72 bp | TGGTCCAGGTGCTGCCTCCATTGGGAACTGCTACATTaGAGAGGTCTTCCTGGCAACAGGAAGTCTTCACGT | + |
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Preference number: 6 (lower is better) Translates to: WSRCCLHWELLH*RGLPGNRKSSR Trigger: ACGTGAAGACTTCCTGTTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTGGACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS CAA 72 bp | ATGGTCCAGGTGCTGCCTCCATTGGGAACTGCTACATaGCAGAGGTCTTCCTGGCAACAGGAAGTCTTCACG | + |
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Preference number: 6 (lower is better) Translates to: MVQVLPPLGTAT*QRSSWQQEVFT Trigger: CGTGAAGACTTCCTGTTGCCAGGAAGACCTCTGCAATGTAGCAGTTCCCAATGGAGGCAGCACCTGGACCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS GCA 72 bp | CTTTACTTTCCTTGTTTGAGAATCCACAATAACTGCTaGCTCCTGAGTAACACAGACTCCATCAGGGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: LYFPCLRIHNNC*LLSNTDSIRVG Trigger: CCCTACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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| CDS GCA 72 bp | GTTCTTTACTTTCCTTGTTTGAGAATCCACAATAACTaGTGCCTCCTGAGTAACACAGACTCCATCAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: VLYFPCLRIHNN*CLLSNTDSIRV Trigger: TACCCTGATGGAGTCTGTGTTACTCAGGAGGCAGCAGTTATTGTGGATTCTCAAACAAGGAAAGTAAAGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023248.13 ENSMUST00000186526.7 ENSMUST00000187171.2 ENSMUST00000187994.7 ENSMUST00000189068.7 |
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