Pregenerated sensors for LXN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047557Ensembl transcript IDs: ENSMUST00000058981.3
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACCTGGGATATCCTCCTTaGTGGCCTGCTGGACCGTCT | + |
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Preference number: 4 (lower is better) Translates to: VTLVFLWPVRLDASEASHLGYPP*WPAGPS Trigger: AGACGGTCCAGCAGGCCAGCAAGGAGGATATCCCAG...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CCA 90 bp | AGAGTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCTTGTGCCCTCTTCCTaGGATATCCTCCTTGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: RVTLVFLWPVRLDASEASLVPSS*DILLAG Trigger: GCCAGCAAGGAGGATATCCCAGGAAGAGGGCACAAG...ACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCACTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR GCA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACCCTCATCTGGGTTCTTaGCGATTTCTCCTTCGAATG | + |
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Preference number: 4 (lower is better) Translates to: VTLVFLWPVRLDASEASHPHLGS*RFLLRM Trigger: CATTCGAAGGAGAAATCGGCAAGAACCCAGATGAGG...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR GCA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACCAGGGAATAATCTCCTaGGATGCAATGTCGTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: VTLVFLWPVRLDASEASHQGIIS*DAMSWS Trigger: ACTCCACGACATTGCATCGCAGGAGATTATTCCCTG...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR GCA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACGGATGCCACAGGACTTaGATTTGCCAGGGAATAATC | + |
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Preference number: 4 (lower is better) Translates to: VTLVFLWPVRLDASEASHGCHRT*ICQGII Trigger: GATTATTCCCTGGCAAATGCAAGTCCTGTGGCATCC...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CCA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACTTTTGTGCCGTACTGTaGATGCCACAGGACTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: VTLVFLWPVRLDASEASHFCAVL*MPQDLH Trigger: ATGCAAGTCCTGTGGCATCCACAGTACGGCACAAAA...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CCA 90 bp | AGAGTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTGTTATCTTCCTCATCTaGGTTCTTGCCGATTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: RVTLVFLWPVRLDASEASVIFLI*VLADFS Trigger: GGAGAAATCGGCAAGAACCCAGATGAGGAAGATAAC...ACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCACTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR TCA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACGTCTCTTCAGAGACATaGGGCTTTGATAAAATGTGT | + |
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Preference number: 4 (lower is better) Translates to: VTLVFLWPVRLDASEASHVSSET*GFDKMC Trigger: ACACATTTTATCAAAGCCTCATGTCTCTGAAGAGAC...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR GCA 90 bp | AGAGTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTTGTGTTTTACTTTTGTaGCGTACTGTGGATGCCACA | + |
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Preference number: 4 (lower is better) Translates to: RVTLVFLWPVRLDASEASCVLLL*RTVDAT Trigger: TGTGGCATCCACAGTACGGCACAAAAGTAAAACACA...ACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR GCA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACGTGCCGTACTGTGGATaGCACAGGACTTGCATTTGC | + |
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Preference number: 4 (lower is better) Translates to: LYYGIYAARYCSQDIKSDVPYCG*HRTCIC Trigger: GCAAATGCAAGTCCTGTGGCATCCACAGTACGGCAC...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CCA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACACCCAGGCTAAGTGCTaGACTGGCTTCATTTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: LYYGIYAARYCSQDIKSDTQAKC*TGFICG Trigger: TCCACAAATGAAGCCAGTCCAGCACTTAGCCTGGGT...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CCA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACTGTGAAGTTGACTTCTaGTGCAGAGCCTTGTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: LYYGIYAARYCSQDIKSDCEVDF*CRALSH Trigger: ATGGGACAAGGCTCTGCACCAGAAGTCAACTTCACA...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR GCA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACTTAAGATGGTACTTGTaGCCTCTTCCTGGGATATCC | + |
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Preference number: 4 (lower is better) Translates to: LYYGIYAARYCSQDIKSDLRWYL*PLPGIS Trigger: GGATATCCCAGGAAGAGGGCACAAGTACCATCTTAA...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CCA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACACAGAAAACTTAAGATaGTACTTGTGCCCTCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LYYGIYAARYCSQDIKSDTENLR*YLCPLP Trigger: AGGAAGAGGGCACAAGTACCATCTTAAGTTTTCTGT...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | AGAGTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCCTTCGAATGTGAAGTaGACTTCTGGTGCAGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: RVTLVFLWPVRLDASEASPSNVK*TSGAEP Trigger: AGGCTCTGCACCAGAAGTCAACTTCACATTCGAAGG...ACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCACTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACTGGATGCCACAGGACTaGCATTTGCCAGGGAATAAT | + |
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Preference number: 5 (lower is better) Translates to: VTLVFLWPVRLDASEASHWMPQD*HLPGNN Trigger: ATTATTCCCTGGCAAATGCAAGTCCTGTGGCATCCA...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | AGAGTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTTTTGGGAGGCGGCTGTaGTGTTTTACTTTTGTGCCG | + |
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Preference number: 5 (lower is better) Translates to: RVTLVFLWPVRLDASEASFGRRL*CFTFVP Trigger: CGGCACAAAAGTAAAACACAACAGCCGCCTCCCAAA...ACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCACTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | GTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTCACCTGGACTGGCTTCATTaGTGGAGACACATTTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: VTLVFLWPVRLDASEASHLDWLH*WRHISK Trigger: TTTGGAAATGTGTCTCCACAAATGAAGCCAGTCCAG...GTGACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS CCA 90 bp | AATTTCTTCCACAGAAAACTTAAGATGGTACTTGTGCCCTCTTCCTaGGATATCCTCCTTGCTGGCCTGCTGGACCGTCTGCACCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: NFFHRKLKMVLVPSS*DILLAGLLDRLHQE Trigger: TTCCTGGTGCAGACGGTCCAGCAGGCCAGCAAGGAGGATATCCCAGGAAGAGGGCACAAGTACCATCTTAAGTTTTCTGTGGAAGAAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACCCTGGGATATCCTCCTaGCTGGCCTGCTGGACCGTC | + |
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Preference number: 5 (lower is better) Translates to: LYYGIYAARYCSQDIKSDPGISS*LACWTV Trigger: GACGGTCCAGCAGGCCAGCAAGGAGGATATCCCAGG...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | AGAGTGACACTGGTATTCCTTTGGCCCGTTAGGCTAGATGCCAGTGAGGCCAGTAACTTAAGATGGTACTaGTGCCCTCTTCCTGGGATA | + |
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Preference number: 5 (lower is better) Translates to: RVTLVFLWPVRLDASEASNLRWY*CPLPGI Trigger: TATCCCAGGAAGAGGGCACAAGTACCATCTTAAGTT...ACTGGCCTCACTGGCATCTAGCCTAACGGGCCAAAGGAATACCAGTGTCACTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS TCA 90 bp | AATTGTCTGGGATGTCCTGTGCTTCCAGCGGTCTCTTCAGAGACATaGGGCTTTGATAAAATGTGTTATCTTCCTCATCTGGGTTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: NCLGCPVLPAVSSET*GFDKMCYLPHLGSC Trigger: GCAAGAACCCAGATGAGGAAGATAACACATTTTATCAAAGCCTCATGTCTCTGAAGAGACCGCTGGAAGCACAGGACATCCCAGACAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACCCACAGGACTTGCATTaGCCAGGGAATAATCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: LYYGIYAARYCSQDIKSDPQDLH*PGNNLL Trigger: CAGGAGATTATTCCCTGGCAAATGCAAGTCCTGTGG...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS-3UTR CAA 90 bp | CTTTATTATGGAATCTATGCAGCTCGGTACTGTAGCCAAGACATAAAGAGTGACTGTTGTGTTTTACTTTaGTGCCGTACTGTGGATGCC | + |
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Preference number: 5 (lower is better) Translates to: LYYGIYAARYCSQDIKSDCCVLL*CRTVDA Trigger: GGCATCCACAGTACGGCACAAAAGTAAAACACAACA...GTCACTCTTTATGTCTTGGCTACAGTACCGAGCTGCATAGATTCCATAATAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS CCA 72 bp | TGCCCTCTTCCTGGGATATCCTCCTTGCTGGCCTGCTaGACCGTCTGCACCAGGAACAGCTTGTGGGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: CPLPGISSLLAC*TVCTRNSLWGV Trigger: GACTCCCCACAAGCTGTTCCTGGTGCAGACGGTCCAGCAGGCCAGCAAGGAGGATATCCCAGGAAGAGGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS CCA 72 bp | CACAGAAAACTTAAGATGGTACTTGTGCCCTCTTCCTaGGATATCCTCCTTGCTGGCCTGCTGGACCGTCTG | + |
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Preference number: 6 (lower is better) Translates to: HRKLKMVLVPSS*DILLAGLLDRL Trigger: CAGACGGTCCAGCAGGCCAGCAAGGAGGATATCCCAGGAAGAGGGCACAAGTACCATCTTAAGTTTTCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS GCA 72 bp | TGGAGACACATTTCCAAAATTGTCTGGGATGTCCTGTaGTTCCAGCGGTCTCTTCAGAGACATGAGGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: WRHISKIVWDVL*FQRSLQRHEAL Trigger: CAAAGCCTCATGTCTCTGAAGAGACCGCTGGAAGCACAGGACATCCCAGACAATTTTGGAAATGTGTCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS CAA 72 bp | TCCTTCGAATGTGAAGTTGACTTCTGGTGCAGAGCCTaGTCCCATTTGGGGGTAAAGAACTTCAGCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SFECEVDFWCRA*SHLGVKNFSCA Trigger: TGCACAGCTGAAGTTCTTTACCCCCAAATGGGACAAGGCTCTGCACCAGAAGTCAACTTCACATTCGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS CAA 90 bp | TGGGATGTCCTGTGCTTCCAGCGGTCTCTTCAGAGACATGAGGCTTaGATAAAATGTGTTATCTTCCTCATCTGGGTTCTTGCCGATTTC | + |
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Preference number: 6 (lower is better) Translates to: WDVLCFQRSLQRHEA*IKCVIFLIWVLADF Trigger: GAAATCGGCAAGAACCCAGATGAGGAAGATAACACATTTTATCAAAGCCTCATGTCTCTGAAGAGACCGCTGGAAGCACAGGACATCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS GCA 72 bp | TTTACTTTTGTGCCGTACTGTGGATGCCACAGGACTTaGATTTGCCAGGGAATAATCTCCTGCGATGCAATG | + |
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Preference number: 6 (lower is better) Translates to: FTFVPYCGCHRT*ICQGIISCDAM Trigger: CATTGCATCGCAGGAGATTATTCCCTGGCAAATGCAAGTCCTGTGGCATCCACAGTACGGCACAAAAGTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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| CDS CAA 72 bp | TTTTACTTTTGTGCCGTACTGTGGATGCCACAGGACTaGCATTTGCCAGGGAATAATCTCCTGCGATGCAAT | + |
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Preference number: 6 (lower is better) Translates to: FYFCAVLWMPQD*HLPGNNLLRCN Trigger: ATTGCATCGCAGGAGATTATTCCCTGGCAAATGCAAGTCCTGTGGCATCCACAGTACGGCACAAAAGTAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058981.3 |
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