Pregenerated sensors for LUM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036446Ensembl transcript IDs: ENSMUST00000038160.6
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTAACCGTGCAAATGCTTACTGCGAACTACATTTCTGTAAGTGGATaGAACTTCATTAATTTTCTTTGGTATCTTGCAAATTACTGGCTT | + |
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Preference number: 1 (lower is better) Translates to: VTVQMLTANYISVSG*NFINFLWYLANYWL Trigger: AAGCCAGTAATTTGCAAGATACCAAAGAAAATTAATGAAGTTGCATCCACTTACAGAAATGTAGTTCGCAGTAAGCATTTGCACGGTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| 3UTR-3UTR TCA 90 bp | CTTACTGCGAACTACATTTCTGTAAGTGGATGCAACTTCATTAATTTTCTTTGGTTTCTGTTCTCAGGATaGAAAAGGCCTGCTTTTCAT | + |
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Preference number: 2 (lower is better) Translates to: LTANYISVSGCNFINFLWFLFSG*KRPAFH Trigger: ATGAAAAGCAGGCCTTTTTCATCCTGAGAACAGAAA...CCAAAGAAAATTAATGAAGTTGCATCCACTTACAGAAATGTAGTTCGCAGTAAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| 3UTR-3UTR TCA 90 bp | CTTACTGCGAACTACATTTCTGTAAGTGGATGCAACTTCATTAATTTTCTTTGGTCTGCAAAACAGACTTaGCATGTCAAGATAATTTGG | + |
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Preference number: 2 (lower is better) Translates to: LTANYISVSGCNFINFLWSAKQT*HVKIIW Trigger: CCAAATTATCTTGACATGTCAAGTCTGTTTTGCAGA...CCAAAGAAAATTAATGAAGTTGCATCCACTTACAGAAATGTAGTTCGCAGTAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| 3UTR-3UTR GCA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCCAGAGTATAAATGTCTaGAAAACAGACTTGACATGT | + |
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Preference number: 2 (lower is better) Translates to: SRKVSLSNRANAYCELHFQSINV*KTDLTC Trigger: ACATGTCAAGTCTGTTTTGCAGACATTTATACTCTG...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| 3UTR-3UTR CAA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCGTCTGCAAAACAGACTaGACATGTCAAGATAATTTG | + |
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Preference number: 3 (lower is better) Translates to: SRKVSLSNRANAYCELHFVCKTD*TCQDNL Trigger: CAAATTATCTTGACATGTCAAGTCTGTTTTGCAGAC...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | TCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGGGTCATCACAGTACATaGCAGTTGGGTAGCTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: SPTFPTMKFCSRTYFNVLGHHST*QLGSCG Trigger: CCCACAGCTACCCAACTGCCATGTACTGTGATGACC...CAATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR TCA 90 bp | TCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGGCACACTCTTCAACTTaGGGTCATCACAGTACATGG | + |
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Preference number: 4 (lower is better) Translates to: SPTFPTMKFCSRTYFNVLAHSST*GHHSTW Trigger: CCATGTACTGTGATGACCTCAAGTTGAAGAGTGTGC...CAATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR TCA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCGCCACTGCAGGTCTGTaGCGTTCTCAAAGGCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SRKVSLSNRANAYCELHFATAGL*RSQRPS Trigger: AGAAGGCCTTTGAGAACGTCACAGACCTGCAGTGGC...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | GAGGAAAATGACTCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCACAGTACATGGCAGTTaGGTAGCTGTGGGGGCAGTT | + |
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Preference number: 4 (lower is better) Translates to: EENDSRKVSLSNRANAYCTVHGS*VAVGAV Trigger: AACTGCCCCCACAGCTACCCAACTGCCATGTACTGT...GCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGAGTCATTTTCCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR TCA 90 bp | ATCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTAGACAGCATCCTCTTTaGGCTGGTTGTGTTGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: IPHIPNHEVLLQNILQCIRQHPL*AGCVED Trigger: ATCTTCAACACAACCAGCTCAAAGAGGATGCTGTCT...AATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR TCA 90 bp | ATCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTTCAGCCAGTTCATTGTaGGATAAACGCAGGTATTGC | + |
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Preference number: 4 (lower is better) Translates to: IPHIPNHEVLLQNILQCISASSL*DKRRYC Trigger: GCAATACCTGCGTTTATCTCACAATGAACTGGCTGA...AATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR GCA 90 bp | GAGGAAAATGACTCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGTCAGCTGTAGGTCTTaGAGGGACTTTGGAAGTGGA | + |
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Preference number: 4 (lower is better) Translates to: EENDSRKVSLSNRANAYCVSCRS*RDFGSG Trigger: TCCACTTCCAAAGTCCCTGCAAGACCTACAGCTGAC...GCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGAGTCATTTTCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR TCA 90 bp | TCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGCATCCGGAATGTTGCTaGTCTTATTATTGTCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: SPTFPTMKFCSRTYFNVLHPECC*SYYCLG Trigger: ACCTAGACAATAATAAGATCAGCAACATTCCGGATG...CAATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR GCA 90 bp | GAGGAAAATGACTCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCCAGTTGGGTGATATTTaGCCATACATGAAGAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: EENDSRKVSLSNRANAYCQLGDI*PYMKRG Trigger: CCCTCTCTTCATGTATGGGCAAATATCACCCAACTG...GCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGAGTCATTTTCCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | CTTACTGCGAACTACATTTCTGTAAGTGGATGCAACTTCATTAATTTTCTTTGGGCCAGGAGGAACCATTaGCACACTCTTCAACTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LTANYISVSGCNFINFLWARRNH*HTLQLE Trigger: CTCAAGTTGAAGAGTGTGCCAATGGTTCCTCCTGGC...CCAAAGAAAATTAATGAAGTTGCATCCACTTACAGAAATGTAGTTCGCAGTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | ATCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGCCTTCTCATCAATATaGTCGATTTGGTTATTCCTC | + |
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Preference number: 4 (lower is better) Translates to: IPHIPNHEVLLQNILQCIAFSSI*SIWLFL Trigger: GAGGAATAACCAAATCGACCATATTGATGAGAAGGC...AATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCCTTGGAGTAAGACAGTaGTCCCAGGATCTTACAGAA | + |
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Preference number: 4 (lower is better) Translates to: SRKVSLSNRANAYCELHFLGVRQ*SQDLTE Trigger: TTCTGTAAGATCCTGGGACCACTGTCTTACTCCAAG...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCATTCTGGTGCACAGTTaGGTGATATTTGCCCATACA | + |
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Preference number: 4 (lower is better) Translates to: SRKVSLSNRANAYCELHFILVHS*VIFAHT Trigger: TGTATGGGCAAATATCACCCAACTGTGCACCAGAAT...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CCA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCTTTTCTAGAAGGTTGTaGTCAAGAATGAGCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: SRKVSLSNRANAYCELHFFSRRL*SRMSHC Trigger: GCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAA...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR TCA 90 bp | TCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCGAACTACATTTCATATTTGCCCATACATaGAGAGAGGGATGTCATAAT | + |
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Preference number: 4 (lower is better) Translates to: SRKVSLSNRANAYCELHFIFAHT*REGCHN Trigger: ATTATGACATCCCTCTCTTCATGTATGGGCAAATAT...GAAATGTAGTTCGCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS GCA 90 bp | AAGGAGCCGAGCTTGCTGATTTTATTATTGGTCAGCTGTAGGTCTTaGAGGGACTTTGGAAGTGGACCGACGGACTCGGTCAGGTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: KEPSLLILLLVSCRS*RDFGSGPTDSVRLL Trigger: CAACAACCTGACCGAGTCCGTCGGTCCACTTCCAAAGTCCCTGCAAGACCTACAGCTGACCAATAATAAAATCAGCAAGCTCGGCTCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 90 bp | TTTGCTACACGTAGACACTCATACATGTCAGGAGGCAGACTGCTCTaGGTGAGAGGATTGCCATCCAAGCGCAGATGCTTGATCTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: FATRRHSYMSGGRLL*VRGLPSKRRCLILE Trigger: CTCCAAGATCAAGCATCTGCGCTTGGATGGCAATCCTCTCACTCAGAGCAGTCTGCCTCCTGACATGTATGAGTGTCTACGTGTAGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | ATCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGGTCTTGCAGGGACTTaGGAAGTGGACCGACGGACT | + |
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Preference number: 5 (lower is better) Translates to: IPHIPNHEVLLQNILQCIGLAGT*EVDRRT Trigger: AGTCCGTCGGTCCACTTCCAAAGTCCCTGCAAGACC...AATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 90 bp | AGTTGGGTAGCTGTGGGGGCAGTTACATTCTGGTGCACAGTTGGGTaGTATTTGCCCATACATGAAGAGAGGGATGTCATAATCGTAGTA | + |
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Preference number: 5 (lower is better) Translates to: SWVAVGAVTFWCTVG*YLPIHEERDVIIVV Trigger: TACTACGATTATGACATCCCTCTCTTCATGTATGGGCAAATATCACCCAACTGTGCACCAGAATGTAACTGCCCCCACAGCTACCCAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 90 bp | TTGGTTATTCCTCAGGTAAAGGTACTTGATGCCAGGAGGAACCATTaGCACACTCTTCAACTTGAGGTCATCACAGTACATGGCAGTTGG | + |
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Preference number: 5 (lower is better) Translates to: LVIPQVKVLDARRNH*HTLQLEVITVHGSW Trigger: CCAACTGCCATGTACTGTGATGACCTCAAGTTGAAGAGTGTGCCAATGGTTCCTCCTGGCATCAAGTACCTTTACCTGAGGAATAACCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 90 bp | ATATTAAACGAGTTTCCAGGTACCCCACTATCAGCCAGTTCATTGTaGGATAAACGCAGGTATTGCAGCCCAGTGAAGCGCTTGAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: ILNEFPGTPLSASSL*DKRRYCSPVKRLKY Trigger: GTACTTCAAGCGCTTCACTGGGCTGCAATACCTGCGTTTATCTCACAATGAACTGGCTGATAGTGGGGTACCTGGAAACTCGTTTAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS GCA 90 bp | TTGATCTTGGAGTTTTCTAGAAGGTTGTGGTCAAGAATGAGCCACTaGAGGTCTGTGACGTTCTCAAAGGCCTTCTCATCAATATGGTCG | + |
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Preference number: 5 (lower is better) Translates to: LILEFSRRLWSRMSH*RSVTFSKAFSSIWS Trigger: CGACCATATTGATGAGAAGGCCTTTGAGAACGTCACAGACCTGCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAACTCCAAGATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 90 bp | AGGATTGCCATCCAAGCGCAGATGCTTGATCTTGGAGTAAGACAGTaGTCCCAGGATCTTACAGAAGCTCTTCACATCAAACTTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: RIAIQAQMLDLGVRQ*SQDLTEALHIKLFK Trigger: CTTGAAAAGTTTGATGTGAAGAGCTTCTGTAAGATCCTGGGACCACTGTCTTACTCCAAGATCAAGCATCTGCGCTTGGATGGCAATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 90 bp | TTAGAGAAAACCTTTCCTTTGATCTTGGAGTTTTCTAGAAGGTTGTaGTCAAGAATGAGCCACTGCAGGTCTGTGACGTTCTCAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: LEKTFPLILEFSRRL*SRMSHCRSVTFSKA Trigger: GGCCTTTGAGAACGTCACAGACCTGCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAACTCCAAGATCAAAGGAAAGGTTTTCTCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | TCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGATCAATATGGTCGATTaGGTTATTCCTCAGGTAAAG | + |
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Preference number: 5 (lower is better) Translates to: SPTFPTMKFCSRTYFNVLINMVD*VIPQVK Trigger: CTTTACCTGAGGAATAACCAAATCGACCATATTGAT...CAATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | GAGGAAAATGACTCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCAGGTACTCTAGTGATTaGAGACCTTTCAGAGAAGCC | + |
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Preference number: 5 (lower is better) Translates to: EENDSRKVSLSNRANAYCRYSSD*RPFREA Trigger: GGCTTCTCTGAAAGGTCTCAAATCACTAGAGTACCT...GCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGAGTCATTTTCCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 90 bp | TATACTCTTAAGCTTATTATAGGAGAGATCAAGCTCGAGCAAGGATaGTATATTAAACGAGTTTCCAGGTACCCCACTATCAGCCAGTTC | + |
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Preference number: 5 (lower is better) Translates to: YTLKLIIGEIKLEQG*YIKRVSRYPTISQF Trigger: GAACTGGCTGATAGTGGGGTACCTGGAAACTCGTTTAATATATCATCCTTGCTCGAGCTTGATCTCTCCTATAATAAGCTTAAGAGTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | ATCCCCCACATTCCCAACCATGAAGTTCTGCTCCAGAACATACTTCAATGTATTGAGAAAACCTTTCCTTaGATCTTGGAGTTTTCTAGA | + |
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Preference number: 5 (lower is better) Translates to: IPHIPNHEVLLQNILQCIEKTFP*ILEFSR Trigger: TCTAGAAAACTCCAAGATCAAAGGAAAGGTTTTCTC...AATACATTGAAGTATGTTCTGGAGCAGAACTTCATGGTTGGGAATGTGGGGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | CTTACTGCGAACTACATTTCTGTAAGTGGATGCAACTTCATTAATTTTCTTTGGGAGTTTTCTAGAAGGTaGTGGTCAAGAATGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LTANYISVSGCNFINFLWEFSRR*WSRMSH Trigger: GTGGCTCATTCTTGACCACAACCTTCTAGAAAACTC...CCAAAGAAAATTAATGAAGTTGCATCCACTTACAGAAATGTAGTTCGCAGTAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | GAGGAAAATGACTCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCTTGCTGATTTTATTATaGGTCAGCTGTAGGTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: EENDSRKVSLSNRANAYCLLILL*VSCRSC Trigger: GCAAGACCTACAGCTGACCAATAATAAAATCAGCAA...GCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGAGTCATTTTCCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS-3UTR CAA 90 bp | GAGGAAAATGACTCAAGAAAAGTTTCACTAAGTAACCGTGCAAATGCTTACTGCTACTCATCCGGAATGTaGCTGATCTTATTATTGTCT | + |
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Preference number: 5 (lower is better) Translates to: EENDSRKVSLSNRANAYCYSSGM*LILLLS Trigger: AGACAATAATAAGATCAGCAACATTCCGGATGAGTA...GCAGTAAGCATTTGCACGGTTACTTAGTGAAACTTTTCTTGAGTCATTTTCCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 72 bp | CGTAGACACTCATACATGTCAGGAGGCAGACTGCTCTaGGTGAGAGGATTGCCATCCAAGCGCAGATGCTTG | + |
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Preference number: 6 (lower is better) Translates to: RRHSYMSGGRLL*VRGLPSKRRCL Trigger: CAAGCATCTGCGCTTGGATGGCAATCCTCTCACTCAGAGCAGTCTGCCTCCTGACATGTATGAGTGTCTACG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 72 bp | GAGTTTCCAGGTACCCCACTATCAGCCAGTTCATTGTaGGATAAACGCAGGTATTGCAGCCCAGTGAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: EFPGTPLSASSL*DKRRYCSPVKR Trigger: GCGCTTCACTGGGCTGCAATACCTGCGTTTATCTCACAATGAACTGGCTGATAGTGGGGTACCTGGAAACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS GCA 72 bp | AGCTTGCTGATTTTATTATTGGTCAGCTGTAGGTCTTaGAGGGACTTTGGAAGTGGACCGACGGACTCGGTC | + |
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Preference number: 6 (lower is better) Translates to: SLLILLLVSCRS*RDFGSGPTDSV Trigger: GACCGAGTCCGTCGGTCCACTTCCAAAGTCCCTGCAAGACCTACAGCTGACCAATAATAAAATCAGCAAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 72 bp | ACTCTTCAACTTGAGGTCATCACAGTACATGGCAGTTaGGTAGCTGTGGGGGCAGTTACATTCTGGTGCACA | + |
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Preference number: 6 (lower is better) Translates to: TLQLEVITVHGS*VAVGAVTFWCT Trigger: TGTGCACCAGAATGTAACTGCCCCCACAGCTACCCAACTGCCATGTACTGTGATGACCTCAAGTTGAAGAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 72 bp | AAGGTCAAGTTGACCAGCCCGTCGAAGGAGCCGAGCTaGCTGATTTTATTATTGGTCAGCTGTAGGTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: KVKLTSPSKEPS*LILLLVSCRSC Trigger: GCAAGACCTACAGCTGACCAATAATAAAATCAGCAAGCTCGGCTCCTTCGACGGGCTGGTCAACTTGACCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 72 bp | GCTGTGGGGGCAGTTACATTCTGGTGCACAGTTGGGTaGTATTTGCCCATACATGAAGAGAGGGATGTCATA | + |
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Preference number: 6 (lower is better) Translates to: AVGAVTFWCTVG*YLPIHEERDVI Trigger: TATGACATCCCTCTCTTCATGTATGGGCAAATATCACCCAACTGTGCACCAGAATGTAACTGCCCCCACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 72 bp | TTTTATTATTGGTCAGCTGTAGGTCTTGCAGGGACTTaGGAAGTGGACCGACGGACTCGGTCAGGTTGTTGT | + |
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Preference number: 6 (lower is better) Translates to: FYYWSAVGLAGT*EVDRRTRSGCC Trigger: ACAACAACCTGACCGAGTCCGTCGGTCCACTTCCAAAGTCCCTGCAAGACCTACAGCTGACCAATAATAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS GCA 72 bp | GAGTTTTCTAGAAGGTTGTGGTCAAGAATGAGCCACTaGAGGTCTGTGACGTTCTCAAAGGCCTTCTCATCA | + |
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Preference number: 6 (lower is better) Translates to: EFSRRLWSRMSH*RSVTFSKAFSS Trigger: TGATGAGAAGGCCTTTGAGAACGTCACAGACCTGCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 72 bp | CCTCAGGTAAAGGTACTTGATGCCAGGAGGAACCATTaGCACACTCTTCAACTTGAGGTCATCACAGTACAT | + |
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Preference number: 6 (lower is better) Translates to: PQVKVLDARRNH*HTLQLEVITVH Trigger: ATGTACTGTGATGACCTCAAGTTGAAGAGTGTGCCAATGGTTCCTCCTGGCATCAAGTACCTTTACCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 90 bp | CAGGTCTGTGACGTTCTCAAAGGCCTTCTCATCAATATGGTCGATTaGGTTATTCCTCAGGTAAAGGTACTTGATGCCAGGAGGAACCAT | + |
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Preference number: 6 (lower is better) Translates to: QVCDVLKGLLINMVD*VIPQVKVLDARRNH Trigger: ATGGTTCCTCCTGGCATCAAGTACCTTTACCTGAGGAATAACCAAATCGACCATATTGATGAGAAGGCCTTTGAGAACGTCACAGACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 72 bp | ACCTTTCCTTTGATCTTGGAGTTTTCTAGAAGGTTGTaGTCAAGAATGAGCCACTGCAGGTCTGTGACGTTC | + |
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Preference number: 6 (lower is better) Translates to: TFPLILEFSRRL*SRMSHCRSVTF Trigger: GAACGTCACAGACCTGCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAACTCCAAGATCAAAGGAAAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CCA 72 bp | ATCCAAGCGCAGATGCTTGATCTTGGAGTAAGACAGTaGTCCCAGGATCTTACAGAAGCTCTTCACATCAAA | + |
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Preference number: 6 (lower is better) Translates to: IQAQMLDLGVRQ*SQDLTEALHIK Trigger: TTTGATGTGAAGAGCTTCTGTAAGATCCTGGGACCACTGTCTTACTCCAAGATCAAGCATCTGCGCTTGGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS TCA 72 bp | TATGGTCGATTTGGTTATTCCTCAGGTAAAGGTACTTaGTGCCAGGAGGAACCATTGGCACACTCTTCAACT | + |
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Preference number: 6 (lower is better) Translates to: YGRFGYSSGKGT*CQEEPLAHSST Trigger: AGTTGAAGAGTGTGCCAATGGTTCCTCCTGGCATCAAGTACCTTTACCTGAGGAATAACCAAATCGACCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 72 bp | GACGTTCTCAAAGGCCTTCTCATCAATATGGTCGATTaGGTTATTCCTCAGGTAAAGGTACTTGATGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: DVLKGLLINMVD*VIPQVKVLDAR Trigger: CCTGGCATCAAGTACCTTTACCTGAGGAATAACCAAATCGACCATATTGATGAGAAGGCCTTTGAGAACGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 90 bp | AGCTTAGAGAAAACCTTTCCTTTGATCTTGGAGTTTTCTAGAAGGTaGTGGTCAAGAATGAGCCACTGCAGGTCTGTGACGTTCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SLEKTFPLILEFSRR*WSRMSHCRSVTFSK Trigger: CTTTGAGAACGTCACAGACCTGCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAACTCCAAGATCAAAGGAAAGGTTTTCTCTAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 90 bp | AGTTTCTTCAGTTGTTTCAGCTTAGAGAAAACCTTTCCTTTGATCTaGGAGTTTTCTAGAAGGTTGTGGTCAAGAATGAGCCACTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SFFSCFSLEKTFPLI*EFSRRLWSRMSHCR Trigger: CCTGCAGTGGCTCATTCTTGACCACAACCTTCTAGAAAACTCCAAGATCAAAGGAAAGGTTTTCTCTAAGCTGAAACAACTGAAGAAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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| CDS CAA 90 bp | ATATGCAGTTTCTTCAGTTGTTTCAGCTTAGAGAAAACCTTTCCTTaGATCTTGGAGTTTTCTAGAAGGTTGTGGTCAAGAATGAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: ICSFFSCFSLEKTFP*ILEFSRRLWSRMSH Trigger: GTGGCTCATTCTTGACCACAACCTTCTAGAAAACTCCAAGATCAAAGGAAAGGTTTTCTCTAAGCTGAAACAACTGAAGAAACTGCATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038160.6 |
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