Pregenerated sensors for LTC4S (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020377

Ensembl transcript IDs: ENSMUST00000101265.9, ENSMUST00000102772.4, ENSMUST00000125555.2, ENSMUST00000221525.2

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GAGGGCCTTCGCCTCAGGCCATCGGCAGGAGCATCTGGAGCCATCTaGGTTGCGCTGAGCGCGCGTATCCCTGGAAATAGCGGAGGCGCG	+
Preference number: 5 (lower is better) Translates to: EGLRLRPSAGASGAI*VALSARIPGNSGGA Trigger: CGCGCCTCCGCTATTTCCAGGGATACGCGCGCTCAGCGCAACTCAGATGGCTCCAGATGCTCCTGCCGATGGCCTGAGGCGAAGGCCCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221525.2
CDS TCA 90 bp	TTACCTGGGCTCGGAAGACGCGCTCGAACTCGGGAGGGCCAGAGGTaGGCGGCGGCGACACGTGGAAAGCCCTTCGTGCAGAGATCACCT	+
Preference number: 5 (lower is better) Translates to: LPGLGRRARTREGQR*AAATRGKPFVQRSP Trigger: AGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCTGGCCCTCCCGAGTTCGAGCGCGTCTTCCGAGCCCAGGTAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4 ENSMUST00000125555.2 ENSMUST00000221525.2
CDS TCA 90 bp	GCCTCAGGCCATCGGCAGGAGCATCTGGAGCCATCTGAGTTGCGCTaGGCGCGCGTATCCCTGGAAATAGCGGAGGCGCGCGAACAGGTA	+
Preference number: 5 (lower is better) Translates to: ASGHRQEHLEPSELR*ARVSLEIAEAREQV Trigger: TACCTGTTCGCGCGCCTCCGCTATTTCCAGGGATACGCGCGCTCAGCGCAACTCAGATGGCTCCAGATGCTCCTGCCGATGGCCTGAGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221525.2
CDS CCA 90 bp	TGGAGCCATCTGAAGAGCGCAGTCCGTAGCGTGCCGGGGAGGAAGTaGACTAGCAAGCCCAGTGCAGCCATCGCCACCAGCAGCCAGAGT	+
Preference number: 5 (lower is better) Translates to: WSHLKSAVRSVPGRK*TSKPSAAIATSSQS Trigger: ACTCTGGCTGCTGGTGGCGATGGCTGCACTGGGCTTGCTAGTCCACTTCCTCCCCGGCACGCTACGGACTGCGCTCTTCAGATGGCTCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102772.4 ENSMUST00000125555.2
CDS CCA 90 bp	ACGCGCTCGAACTCGGGAGGGCCAGAGGTGAGCGGCGGCGACACGTaGAAAGCCCTTCGTGCAGAGATCACCTTGCAACAGAACTCCCAC	+
Preference number: 5 (lower is better) Translates to: TRSNSGGPEVSGGDT*KALRAEITLQQNSH Trigger: GTGGGAGTTCTGTTGCAAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCTGGCCCTCCCGAGTTCGAGCGCGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125555.2 ENSMUST00000221525.2
CDS GCA 90 bp	GGTAGAACAGTCCGCACAGGGCTGCGGCTCCTTCGTGGAAGAAGATaGCGGCGACCCAGAGTGTGGCGAGGAACAGCGGAAAGTACTCGC	+
Preference number: 5 (lower is better) Translates to: GRTVRTGLRLLRGRR*RRPRVWRGTAESTR Trigger: GCGAGTACTTTCCGCTGTTCCTCGCCACACTCTGGGTCGCCGGCATCTTCTTCCACGAAGGAGCCGCAGCCCTGTGCGGACTGTTCTACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4 ENSMUST00000125555.2 ENSMUST00000221525.2
CDS CCA 90 bp	GGGCTGCGGCTCCTTCGTGGAAGAAGATGCCGGCGACCCAGAGTGTaGCGAGGAACAGCGGAAAGTACTCGCTGCAGTTTACCTGGGCTC	+
Preference number: 5 (lower is better) Translates to: GLRLLRGRRCRRPRV*RGTAESTRCSLPGL Trigger: GAGCCCAGGTAAACTGCAGCGAGTACTTTCCGCTGTTCCTCGCCACACTCTGGGTCGCCGGCATCTTCTTCCACGAAGGAGCCGCAGCCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4 ENSMUST00000125555.2 ENSMUST00000221525.2
CDS TCA 72 bp	CTCGGAAGACGCGCTCGAACTCGGGAGGGCCAGAGGTaGGCGGCGGCGACACGTGGAAAGCCCTTCGTGCAG	+
Preference number: 6 (lower is better) Translates to: LGRRARTREGQR*AAATRGKPFVQ Trigger: CTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCTGGCCCTCCCGAGTTCGAGCGCGTCTTCCGAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4 ENSMUST00000125555.2 ENSMUST00000221525.2
CDS CCA 72 bp	GGAGGGCCTTCGCCTCAGGCCATCGGCAGGAGCATCTaGAGCCATCTGAGTTGCGCTGAGCGCGCGTATCCC	+
Preference number: 6 (lower is better) Translates to: GGPSPQAIGRSI*SHLSCAERAYP Trigger: GGGATACGCGCGCTCAGCGCAACTCAGATGGCTCCAGATGCTCCTGCCGATGGCCTGAGGCGAAGGCCCTCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221525.2
CDS TCA 72 bp	CGCCTCAGGCCATCGGCAGGAGCATCTGGAGCCATCTaGAGAGCGCAGTCCGTAGCGTGCCGGGGAGGAAGT	+
Preference number: 6 (lower is better) Translates to: RLRPSAGASGAI*RAQSVACRGGS Trigger: ACTTCCTCCCCGGCACGCTACGGACTGCGCTCTTCAGATGGCTCCAGATGCTCCTGCCGATGGCCTGAGGCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125555.2
CDS GCA 72 bp	GTCCGCACAGGGCTGCGGCTCCTTCGTGGAAGAAGATaGCGGCGACCCAGAGTGTGGCGAGGAACAGCGGAA	+
Preference number: 6 (lower is better) Translates to: VRTGLRLLRGRR*RRPRVWRGTAE Trigger: TTCCGCTGTTCCTCGCCACACTCTGGGTCGCCGGCATCTTCTTCCACGAAGGAGCCGCAGCCCTGTGCGGAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4 ENSMUST00000125555.2 ENSMUST00000221525.2
CDS CCA 72 bp	CTGAAGAGCGCAGTCCGTAGCGTGCCGGGGAGGAAGTaGACTAGCAAGCCCAGTGCAGCCATCGCCACCAGC	+
Preference number: 6 (lower is better) Translates to: LKSAVRSVPGRK*TSKPSAAIATS Trigger: GCTGGTGGCGATGGCTGCACTGGGCTTGCTAGTCCACTTCCTCCCCGGCACGCTACGGACTGCGCTCTTCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102772.4 ENSMUST00000125555.2
CDS TCA 72 bp	CATCGGCAGGAGCATCTGGAGCCATCTGAGTTGCGCTaGGCGCGCGTATCCCTGGAAATAGCGGAGGCGCGC	+
Preference number: 6 (lower is better) Translates to: HRQEHLEPSELR*ARVSLEIAEAR Trigger: GCGCGCCTCCGCTATTTCCAGGGATACGCGCGCTCAGCGCAACTCAGATGGCTCCAGATGCTCCTGCCGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101265.9 ENSMUST00000221525.2
CDS CCA 72 bp	AACTCGGGAGGGCCAGAGGTGAGCGGCGGCGACACGTaGAAAGCCCTTCGTGCAGAGATCACCTGTAGGGAG	+
Preference number: 6 (lower is better) Translates to: NSGGPEVSGGDT*KALRAEITCRE Trigger: CTCCCTACAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCTGGCCCTCCCGAGTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4
CDS CCA 72 bp	AACTCGGGAGGGCCAGAGGTGAGCGGCGGCGACACGTaGAAAGCCCTTCGTGCAGAGATCACCTTGCAACAG	+
Preference number: 6 (lower is better) Translates to: NSGGPEVSGGDT*KALRAEITLQQ Trigger: CTGTTGCAAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCTGGCCCTCCCGAGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125555.2 ENSMUST00000221525.2
CDS CAA 90 bp	GTGAGCGGCGGCGACACGTGGAAAGCCCTTCGTGCAGAGATCACCTaGCAACAGAACTCCCACGAGGGTGACGGTAGCCAGAAGAGCCAC	+
Preference number: 6 (lower is better) Translates to: VSGGDTWKALRAEIT*QQNSHEGDGSQKSH Trigger: GTGGCTCTTCTGGCTACCGTCACCCTCGTGGGAGTTCTGTTGCAAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125555.2 ENSMUST00000221525.2
CDS GCA 72 bp	AGAGGTGAGCGGCGGCGACACGTGGAAAGCCCTTCGTaGAGAGATCACCTTGCAACAGAACTCCCACGAGGG	+
Preference number: 6 (lower is better) Translates to: RGERRRHVESPS*RDHLATELPRG Trigger: CCCTCGTGGGAGTTCTGTTGCAAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCCGCCGCTCACCTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125555.2 ENSMUST00000221525.2
CDS CAA 72 bp	GGCGACACGTGGAAAGCCCTTCGTGCAGAGATCACCTaGCAACAGAACTCCCACGAGGGTGACGGTAGCCAG	+
Preference number: 6 (lower is better) Translates to: GDTWKALRAEIT*QQNSHEGDGSQ Trigger: CTGGCTACCGTCACCCTCGTGGGAGTTCTGTTGCAAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125555.2 ENSMUST00000221525.2
CDS GCA 72 bp	GCGACACGTGGAAAGCCCTTCGTGCAGAGATCACCTTaGAACAGAACTCCCACGAGGGTGACGGTAGCCAGA	+
Preference number: 6 (lower is better) Translates to: ATRGKPFVQRSP*NRTPTRVTVAR Trigger: TCTGGCTACCGTCACCCTCGTGGGAGTTCTGTTGCAAGGTGATCTCTGCACGAAGGGCTTTCCACGTGTCGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000125555.2 ENSMUST00000221525.2
CDS CCA 72 bp	CTCCTTCGTGGAAGAAGATGCCGGCGACCCAGAGTGTaGCGAGGAACAGCGGAAAGTACTCGCTGCAGTTTA	+
Preference number: 6 (lower is better) Translates to: LLRGRRCRRPRV*RGTAESTRCSL Trigger: TAAACTGCAGCGAGTACTTTCCGCTGTTCCTCGCCACACTCTGGGTCGCCGGCATCTTCTTCCACGAAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101265.9 ENSMUST00000102772.4 ENSMUST00000125555.2 ENSMUST00000221525.2

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