Pregenerated sensors for LTB4R2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040432Ensembl transcript IDs: ENSMUST00000044554.5
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTaGAGGAATCAGGTTCAGATAGAGAAATCCTTATTCAGCCAAACT | + |
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Preference number: 1 (lower is better) Translates to: QILNIGHSHPHNAMV*RNQVQIEKSLFSQT Trigger: AGTTTGGCTGAATAAGGATTTCTCTATCTGAACCTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| 3UTR-3UTR GCA 90 bp | ATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATCAGGTTCAGATACAGCCAAACTCAAACTaGAATCAGAGAAGGGTCCTC | + |
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Preference number: 2 (lower is better) Translates to: IGHSHPHNAMVWRNQVQIQPNSN*NQRRVL Trigger: GAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTG...TATCTGAACCTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| 3UTR-3UTR CCA 90 bp | ACAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAAAGTACTCCAGAGCTCTaGGAACACAATGAAAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: TNFEHRPQSPSQCHGLEESTPEL*EHNEKW Trigger: CCACTTTTCATTGTGTTCCCAGAGCTCTGGAGTACT...TTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| 3UTR CAA 90 bp | ACAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTaGGAGGAATCAGGTTCAGATAGAGAAATCCTTATTCAGCCAAAC | + |
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Preference number: 2 (lower is better) Translates to: TNFEHRPQSPSQCHG*EESGSDREILIQPN Trigger: GTTTGGCTGAATAAGGATTTCTCTATCTGAACCTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| 3UTR CCA 72 bp | AACATAGGCCACAGTCACCCTCACAATGCCATGGTTTaGAGGAATCAGGTTCAGATAGAGAAATCCTTATTC | + |
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Preference number: 3 (lower is better) Translates to: NIGHSHPHNAMV*RNQVQIEKSLF Trigger: GAATAAGGATTTCTCTATCTGAACCTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| 3UTR GCA 72 bp | TCAGATAGAGAAATCCTTATTCAGCCAAACTCAAACTaGAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCT | + |
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Preference number: 3 (lower is better) Translates to: SDREILIQPNSN*NQRRVLKYSRA Trigger: AGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAAGGATTTCTCTATCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CCA 90 bp | CCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAGGTGCAGCACAAGTGTaGCCGCCAGTGGCCGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: PNSNCNQRRVLKYSRALGGAAQV*PPVAGP Trigger: CGGGCCGGCCACTGGCGGCCACACTTGTGCTGCACC...TCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | TCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTACAGCCAGGCAGCGCTaGAGGCTGAGCAGGCCGGTG | + |
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Preference number: 4 (lower is better) Translates to: SAKLKLQSEKGPQVLQSSTARQR*RLSRPV Trigger: CACCGGCCTGCTCAGCCTGCAGCGCTGCCTGGCTGT...AGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR TCA 90 bp | TTATTCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCCACAAAGAGCGGCGTaGGCAGCAGCACCGCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: LFSQTQTAIREGSSSTPEPQRAA*AAAPRR Trigger: ACGGCGCGGTGCTGCTGCTCACGCCGCTCTTTGTGG...CTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR TCA 90 bp | TTATTCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCCAGGAAGGGCCGAGTaGCAGCCAGGCAGCGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LFSQTQTAIREGSSSTPEPGRAE*QPGSAA Trigger: TGCAGCGCTGCCTGGCTGTCACTCGGCCCTTCCTGG...CTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR TCA 90 bp | AATCCTTATTCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCGATGGGTGGCACAGCTaGCACACGCGCCCGCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: NPYSAKLKLQSEKGPQVLDGWHS*HTRPPQ Trigger: CTGGGGCGGGCGCGTGTGTCAGCTGTGCCACCCATC...GAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAAGGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CCA 90 bp | AAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAACAGCAGCTGCGTGCACTaGCGATGGGTGGCACAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KLKLQSEKGPQVLQSSGNSSCVH*RWVAQL Trigger: CAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCT...GTTCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | ATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATCAGCGTAGTACACCGCCTTaGAGCCCACCTGGCCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: ILNIGHSHPHNAMVWRNQRSTPP*SPPGPR Trigger: CCTTGGGCCAGGTGGGCTGCAAGGCGGTGTACTACG...CTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | CAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAACACAATGCTCAGATGAGCAGCTaGGTGCACTGGCGATGGGTG | + |
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Preference number: 4 (lower is better) Translates to: QTAIREGSSSTPELWEHNAQMSS*VHWRWV Trigger: CACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGC...ATTGTGTTCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CCA 90 bp | ATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAACACAATGAAAAGTGGTACGAAGCCATTGCCTaGCAGTCCCAGCAACGCCGC | + |
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Preference number: 4 (lower is better) Translates to: IREGSSSTPELWEHNEKWYEAIA*QSQQRR Trigger: GCGGCGTTGCTGGGACTGCCAGGCAATGGCTTCGTA...CCACTTTTCATTGTGTTCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CCA 90 bp | ATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATCAGGTTCAGATACAAAGGCCAGCACGATaGCGCTCACCAGACGACCCA | + |
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Preference number: 4 (lower is better) Translates to: IGHSHPHNAMVWRNQVQIQRPAR*RSPDDP Trigger: TGGGTCGTCTGGTGAGCGCCATCGTGCTGGCCTTTG...TATCTGAACCTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | AGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGGTCTCCATTGCCCCTaGCCTGCCCCATTACTTTCA | + |
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Preference number: 4 (lower is better) Translates to: SQTQTAIREGSSSTPELWGLHCP*PAPLLS Trigger: TGAAAGTAATGGGGCAGGGCAGGGGCAATGGAGACC...CCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR TCA 90 bp | CAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAAGCAAATCCCCCGCAGTaGAGACATAGAGCACTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QTQTAIREGSSSTPELWEANPPQ*RHRALG Trigger: ACCCAGTGCTCTATGTCTTCACTGCGGGGGATTTGC...TTCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CCA 90 bp | CAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATTGCGTGCACTGGCGATaGGTGGCACAGCTGACACAC | + |
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Preference number: 4 (lower is better) Translates to: QILNIGHSHPHNAMVWRNCVHWR*VAQLTH Trigger: GTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCA...ATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR TCA 90 bp | CAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATGCCAAGCCTCTTGGCTaGGGAAAGCCACAAAGAGCG | + |
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Preference number: 4 (lower is better) Translates to: QILNIGHSHPHNAMVWRNAKPLG*GKPQRA Trigger: CGCTCTTTGTGGCTTTCCTCAGCCAAGAGGCTTGGC...ATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR TCA 90 bp | AATCCTTATTCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCGCTGGCGTACATGCTaGGCGCGCACACGTAGTACA | + |
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Preference number: 4 (lower is better) Translates to: NPYSAKLKLQSEKGPQVLRWRTC*ARTRST Trigger: TGTACTACGTGTGCGCGCTCAGCATGTACGCCAGCG...GAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAAGGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | CAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAACACAATATACTACGAAGCCATTaGCTGGCAGTCCCAGCAACG | + |
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Preference number: 4 (lower is better) Translates to: QTAIREGSSSTPELWEHNILRSH*LAVPAT Trigger: CGTTGCTGGGACTGCCAGGCAATGGCTTCGTAGTAT...ATTGTGTTCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | AATCCTTATTCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCTCCAGGGTCTCCATTaGCCCTGCCCTGCCCCATTA | + |
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Preference number: 4 (lower is better) Translates to: NPYSAKLKLQSEKGPQVLLQGLH*PCPAPL Trigger: TAATGGGGCAGGGCAGGGGCAATGGAGACCCTGGAG...GAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAAGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | ACAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATGTCTTTCTCCGTCTTaGCCCCATCTCCGCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: TNFEHRPQSPSQCHGLEECLSPS*PHLRLQ Trigger: CTGGAGGCGGAGATGGGGGCAAGACGGAGAAAGACA...TTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR GCA 90 bp | CAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATCCATTGCCCCTGCCCTaGCCCATTACTTTCAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: QILNIGHSHPHNAMVWRNPLPLP*PITFSL Trigger: TAAGCTGAAAGTAATGGGGCAGGGCAGGGGCAATGG...ATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CCA 90 bp | TCAGATAGAGAAATCCTTATTCAGCCAAACTCAAACTGCAATCAGAGAAGGGTCAAGGGCCAAGCCTCTTaGCTGAGGAAAGCCACAAAG | + |
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Preference number: 4 (lower is better) Translates to: SDREILIQPNSNCNQRRVKGQAS*LRKATK Trigger: CTTTGTGGCTTTCCTCAGCCAAGAGGCTTGGCCCTT...GACCCTTCTCTGATTGCAGTTTGAGTTTGGCTGAATAAGGATTTCTCTATCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| 3UTR CAA 72 bp | GAACATAGGCCACAGTCACCCTCACAATGCCATGGTTaGGAGGAATCAGGTTCAGATAGAGAAATCCTTATT | + |
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Preference number: 4 (lower is better) Translates to: EHRPQSPSQCHG*EESGSDREILI Trigger: AATAAGGATTTCTCTATCTGAACCTGATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 90 bp | AGCCAAAGGCCAGCACGATGGCGCTCACCAGACGACCCACCCGTGTaGCTTGTCGCCCCGAGCCCCAGCGCGCTCCTCGCAACCGCGCCA | + |
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Preference number: 5 (lower is better) Translates to: SQRPARWRSPDDPPV*LVAPSPSALLATAP Trigger: TGGCGCGGTTGCGAGGAGCGCGCTGGGGCTCGGGGCGACAAGGCACACGGGTGGGTCGTCTGGTGAGCGCCATCGTGCTGGCCTTTGGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 90 bp | GGGCCAGGTGCAGCACAAGTGTGGCCGCCAGTGGCCGGCCCGCCGTaGGCCGCCAGCCCGCTAAGCTCCATACTACGAAGCCATTGCCTG | + |
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Preference number: 5 (lower is better) Translates to: GPGAAQVWPPVAGPP*AASPLSSILRSHCL Trigger: CAGGCAATGGCTTCGTAGTATGGAGCTTAGCGGGCTGGCGGCCCACGGCGGGCCGGCCACTGGCGGCCACACTTGTGCTGCACCTGGCCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS TCA 90 bp | GGGGTCCTTCCGGCGGAGCGAGCGCGGCCACCGCCTGTAGGAGATTaGCCGCGTGGTAGGGAGCCCAGAGCAAGCCAAAGGCCAGCACGA | + |
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Preference number: 5 (lower is better) Translates to: GVLPAERARPPPVGD*PRGREPRASQRPAR Trigger: TCGTGCTGGCCTTTGGCTTGCTCTGGGCTCCCTACCACGCGGTCAATCTCCTACAGGCGGTGGCCGCGCTCGCTCCGCCGGAAGGACCCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 90 bp | AGTCAGGGTCTCCAGGCTCAGATGAGCAGCTGCGTGCACTGGCGATaGGTGGCACAGCTGACACACGCGCCCGCCCCAGAGGTGGCGGTA | + |
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Preference number: 5 (lower is better) Translates to: SQGLQAQMSSCVHWR*VAQLTHAPAPEVAV Trigger: TACCGCCACCTCTGGGGCGGGCGCGTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGCCTGGAGACCCTGACT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 90 bp | GAAGGCAGTCAGGGTCTCCAGGCTCAGATGAGCAGCTGCGTGCACTaGCGATGGGTGGCACAGCTGACACACGCGCCCGCCCCAGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: EGSQGLQAQMSSCVH*RWVAQLTHAPAPEV Trigger: CACCTCTGGGGCGGGCGCGTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGCCTGGAGACCCTGACTGCCTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 90 bp | CCGCCGTGGGCCGCCAGCCCGCTAAGCTCCATACTACGAAGCCATTaGCTGGCAGTCCCAGCAACGCCGCCAGCAGTAGAAAGGCAGTGC | + |
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Preference number: 5 (lower is better) Translates to: PPWAASPLSSILRSH*LAVPATPPAVERQC Trigger: GCACTGCCTTTCTACTGCTGGCGGCGTTGCTGGGACTGCCAGGCAATGGCTTCGTAGTATGGAGCTTAGCGGGCTGGCGGCCCACGGCGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 90 bp | AGGCAAGACGAAGGCAGTCAGGGTCTCCAGGCTCAGATGAGCAGCTaGGTGCACTGGCGATGGGTGGCACAGCTGACACACGCGCCCGCC | + |
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Preference number: 5 (lower is better) Translates to: RQDEGSQGLQAQMSS*VHWRWVAQLTHAPA Trigger: GGCGGGCGCGTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGCCTGGAGACCCTGACTGCCTTCGTCTTGCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 90 bp | CTGGCAGTCCCAGCAACGCCGCCAGCAGTAGAAAGGCAGTGCCGGTaGCCCGCGAGCCCTTCCAGCTCAGTAGTGTCTCATTCCCAGGCG | + |
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Preference number: 5 (lower is better) Translates to: LAVPATPPAVERQCR*PASPSSSVVSHSQA Trigger: CGCCTGGGAATGAGACACTACTGAGCTGGAAGGGCTCGCGGGCCACCGGCACTGCCTTTCTACTGCTGGCGGCGTTGCTGGGACTGCCAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 90 bp | CATTGCCTGGCAGTCCCAGCAACGCCGCCAGCAGTAGAAAGGCAGTaGCGGTGGCCCGCGAGCCCTTCCAGCTCAGTAGTGTCTCATTCC | + |
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Preference number: 5 (lower is better) Translates to: HCLAVPATPPAVERQ*RWPASPSSSVVSHS Trigger: GGAATGAGACACTACTGAGCTGGAAGGGCTCGCGGGCCACCGGCACTGCCTTTCTACTGCTGGCGGCGTTGCTGGGACTGCCAGGCAATG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CAA 90 bp | AACTCAAACTGCAATCAGAGAAGGGTCCTCAAGTACTCCAGAGCTCTGGGAACACTGTCTTTCTCCGTCTaGCCCCCATCTCCGCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: NSNCNQRRVLKYSRALGTLSFSV*PPSPPP Trigger: TGGAGGCGGAGATGGGGGCAAGACGGAGAAAGACAG...TGTTCCCAGAGCTCTGGAGTACTTGAGGACCCTTCTCTGATTGCAGTTTGAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS-3UTR CAA 90 bp | CAAATTTTGAACATAGGCCACAGTCACCCTCACAATGCCATGGTTTGGAGGAATCAAGGGCCAAGCCTCTaGGCTGAGGAAAGCCACAAA | + |
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Preference number: 5 (lower is better) Translates to: QILNIGHSHPHNAMVWRNQGPSL*AEESHK Trigger: TTTGTGGCTTTCCTCAGCCAAGAGGCTTGGCCCTTG...ATTCCTCCAAACCATGGCATTGTGAGGGTGACTGTGGCCTATGTTCAAAATTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 72 bp | GTGAGCAGCAGCACCGCGCCGTCGGCCAGGGCCAGGTaGAGCACAAGTGTGGCCGCCAGTGGCCGGCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: VSSSTAPSARAR*STSVAASGRPA Trigger: GGCGGGCCGGCCACTGGCGGCCACACTTGTGCTGCACCTGGCCCTGGCCGACGGCGCGGTGCTGCTGCTCAC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 72 bp | CCAGCACGATGGCGCTCACCAGACGACCCACCCGTGTaGCTTGTCGCCCCGAGCCCCAGCGCGCTCCTCGCA | + |
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Preference number: 6 (lower is better) Translates to: PARWRSPDDPPV*LVAPSPSALLA Trigger: TGCGAGGAGCGCGCTGGGGCTCGGGGCGACAAGGCACACGGGTGGGTCGTCTGGTGAGCGCCATCGTGCTGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CAA 72 bp | CACGATGGCGCTCACCAGACGACCCACCCGTGTGCCTaGTCGCCCCGAGCCCCAGCGCGCTCCTCGCAACCG | + |
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Preference number: 6 (lower is better) Translates to: HDGAHQTTHPCA*SPRAPARSSQP Trigger: CGGTTGCGAGGAGCGCGCTGGGGCTCGGGGCGACAAGGCACACGGGTGGGTCGTCTGGTGAGCGCCATCGTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CAA 90 bp | AAAGGCCAGCACGATGGCGCTCACCAGACGACCCACCCGTGTGCCTaGTCGCCCCGAGCCCCAGCGCGCTCCTCGCAACCGCGCCAGCGT | + |
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Preference number: 6 (lower is better) Translates to: KGQHDGAHQTTHPCA*SPRAPARSSQPRQR Trigger: ACGCTGGCGCGGTTGCGAGGAGCGCGCTGGGGCTCGGGGCGACAAGGCACACGGGTGGGTCGTCTGGTGAGCGCCATCGTGCTGGCCTTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS TCA 72 bp | CCGGCGGAGCGAGCGCGGCCACCGCCTGTAGGAGATTaGCCGCGTGGTAGGGAGCCCAGAGCAAGCCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: PAERARPPPVGD*PRGREPRASQR Trigger: CCTTTGGCTTGCTCTGGGCTCCCTACCACGCGGTCAATCTCCTACAGGCGGTGGCCGCGCTCGCTCCGCCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 72 bp | CTCCAGGCTCAGATGAGCAGCTGCGTGCACTGGCGATaGGTGGCACAGCTGACACACGCGCCCGCCCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LQAQMSSCVHWR*VAQLTHAPAPE Trigger: CTCTGGGGCGGGCGCGTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGCCTGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 72 bp | CAGGGTCTCCAGGCTCAGATGAGCAGCTGCGTGCACTaGCGATGGGTGGCACAGCTGACACACGCGCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: QGLQAQMSSCVH*RWVAQLTHAPA Trigger: GGCGGGCGCGTGTGTCAGCTGTGCCACCCATCGCCAGTGCACGCAGCTGCTCATCTGAGCCTGGAGACCCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 72 bp | GCAGTCCCAGCAACGCCGCCAGCAGTAGAAAGGCAGTaGCGGTGGCCCGCGAGCCCTTCCAGCTCAGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: AVPATPPAVERQ*RWPASPSSSVV Trigger: CACTACTGAGCTGGAAGGGCTCGCGGGCCACCGGCACTGCCTTTCTACTGCTGGCGGCGTTGCTGGGACTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CAA 90 bp | CCCGCCGTGGGCCGCCAGCCCGCTAAGCTCCATACTACGAAGCCATaGCCTGGCAGTCCCAGCAACGCCGCCAGCAGTAGAAAGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: PAVGRQPAKLHTTKP*PGSPSNAASSRKAV Trigger: CACTGCCTTTCTACTGCTGGCGGCGTTGCTGGGACTGCCAGGCAATGGCTTCGTAGTATGGAGCTTAGCGGGCTGGCGGCCCACGGCGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CCA 72 bp | CCAGCAACGCCGCCAGCAGTAGAAAGGCAGTGCCGGTaGCCCGCGAGCCCTTCCAGCTCAGTAGTGTCTCAT | + |
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Preference number: 6 (lower is better) Translates to: PATPPAVERQCR*PASPSSSVVSH Trigger: ATGAGACACTACTGAGCTGGAAGGGCTCGCGGGCCACCGGCACTGCCTTTCTACTGCTGGCGGCGTTGCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS CAA 72 bp | GGCCGCCAGCCCGCTAAGCTCCATACTACGAAGCCATaGCCTGGCAGTCCCAGCAACGCCGCCAGCAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: GRQPAKLHTTKP*PGSPSNAASSR Trigger: TCTACTGCTGGCGGCGTTGCTGGGACTGCCAGGCAATGGCTTCGTAGTATGGAGCTTAGCGGGCTGGCGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 72 bp | GCCGCCAGCCCGCTAAGCTCCATACTACGAAGCCATTaGCTGGCAGTCCCAGCAACGCCGCCAGCAGTAGAA | + |
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Preference number: 6 (lower is better) Translates to: AASPLSSILRSH*LAVPATPPAVE Trigger: TTCTACTGCTGGCGGCGTTGCTGGGACTGCCAGGCAATGGCTTCGTAGTATGGAGCTTAGCGGGCTGGCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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| CDS GCA 72 bp | CCATCTCCGCCTCCAGGGTCTCCATTGCCCCTGCCCTaGCCCATTACTTTCAGCTTAGGAGTAGTTCGGAGT | + |
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Preference number: 6 (lower is better) Translates to: PSPPPGSPLPLP*PITFSLGVVRS Trigger: ACTCCGAACTACTCCTAAGCTGAAAGTAATGGGGCAGGGCAGGGGCAATGGAGACCCTGGAGGCGGAGATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044554.5 |
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