RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LTB4R1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046908

Ensembl transcript IDs: ENSMUST00000057569.4

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTaGCCCACCCCTCCCTCTCTTCCGCTTAAGCCCAGTCCCCAACAT +
Preference number: 1 (lower is better)
Translates to: ACRSQARASCLSALT*PTPPSLPLKPSPQH
Trigger: ATGTTGGGGACTGGGCTTAAGCGGAAGAGAGGGAGGGGTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR TCA 90 bp GCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACCTGCCCTCCAGTAGCTTaGCCACGAAGCCCACGCCCG +
Preference number: 4 (lower is better)
Translates to: ACRSQARASCLSALTCPTCPPVA*PRSPRP
Trigger: CGGGCGTGGGCTTCGTGGTCAAGCTACTGGAGGGCA...GGTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp TGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACGCACCGGGTTCACGCTaGTGCTCAGGAAGGCCAGCG +
Preference number: 4 (lower is better)
Translates to: CLQKPGQSILSLCPDLPHAPGSR*CSGRPA
Trigger: CGCTGGCCTTCCTGAGCAGCAGCGTGAACCCGGTGC...GTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR TCA 90 bp GCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACCGCGGGCCACTGCCAGTaGTCGGTCCAGACTCATGAT +
Preference number: 4 (lower is better)
Translates to: ACRSQARASCLSALTCPTAGHCQ*SVQTHD
Trigger: ATCATGAGTCTGGACCGATCACTGGCAGTGGCCCGC...GGTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp TGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACAAGACACCACCCAGATaGCTGCCAGCACCCATCGGG +
Preference number: 4 (lower is better)
Translates to: CLQKPGQSILSLCPDLPHKTPPR*LPAPIG
Trigger: CCCGATGGGTGCTGGCAGGCATCTGGGTGGTGTCTT...GTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTTGCCCCCGCGGCGGGTaGTGGACACCTCCGAGCCAG +
Preference number: 4 (lower is better)
Translates to: DFSFNREAACRSQARASCCPRGG*WTPPSQ
Trigger: CTGGCTCGGAGGTGTCCAGCACCCGCCGCGGGGGCA...ACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACCACACTACAAAGCTATTaGCAGGAAGCCCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: ACRSQARASCLSALTCPTTLQSY*QEAPQP
Trigger: TGGCTGTGGGGCTTCCTGGCAATAGCTTTGTAGTGT...GGTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGGCCGAGCCTGCAGCCTaGGCCCGATGTCAGAGTAGC +
Preference number: 4 (lower is better)
Translates to: VLIVKLPAEARPEHPVSLAEPAA*ARCQSS
Trigger: GCTACTCTGACATCGGGCGCAGGCTGCAGGCTCGGC...CAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CCA 90 bp GCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACCACACAAGGACCGGTATaGCCAGCAGAAAAGACACCA +
Preference number: 4 (lower is better)
Translates to: ACRSQARASCLSALTCPTTQGPV*PAEKTP
Trigger: TGGTGTCTTTTCTGCTGGCCATACCGGTCCTTGTGT...GGTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCCACCAGGAGAAGAAGGTGCTaGAGGAGATGTAGTGTTTGC +
Preference number: 4 (lower is better)
Translates to: ACRSQARASCLSALTCPTRRRRC*RRCSVC
Trigger: GCAAACACTACATCTCCTGCAGCACCTTCTTCTCCT...GGTGGGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCCGGGTTCACGCTGCTaGTCAGGAAGGCCAGCGCGA +
Preference number: 4 (lower is better)
Translates to: DFSFNREAACRSQARASCPGSRC*SGRPAR
Trigger: TCGCGCTGGCCTTCCTGAGCAGCAGCGTGAACCCGG...ACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCACCACCCAGATGCCTaGCAGCACCCATCGGGCAAA +
Preference number: 4 (lower is better)
Translates to: DFSFNREAACRSQARASCHHPDA*QHPSGK
Trigger: TTTGCCCGATGGGTGCTGGCAGGCATCTGGGTGGTG...ACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGGTGACCGTGCGTTTCTaGATCCTTTTCAGGATGCTC +
Preference number: 4 (lower is better)
Translates to: VLIVKLPAEARPEHPVSLVTVRF*ILFRML
Trigger: GAGCATCCTGAAAAGGATGCAGAAACGCACGGTCAC...CAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CCA 90 bp TTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCAGACAGTAGAACAATaGGCAACAGAGACAGGGACA +
Preference number: 4 (lower is better)
Translates to: FNREAACRSQARASCLSAQTVEQ*ATETGT
Trigger: TGTCCCTGTCTCTGTTGCCCATTGTTCTACTGTCTG...GGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CCA 90 bp GACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCCTCGAGCCAGAAAGTaGAGGAAAAAGGGAGCAGTG +
Preference number: 4 (lower is better)
Translates to: DFSFNREAACRSQARASCPRARK*RKKGAV
Trigger: CACTGCTCCCTTTTTCCTCCACTTTCTGGCTCGAGG...ACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp ACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCGCATCCTTTTCAGGATaGTCCACACTACAAAGCTAT +
Preference number: 4 (lower is better)
Translates to: TLVLIVKLPAEARPEHPVASFSG*STLQSY
Trigger: ATAGCTTTGTAGTGTGGAGCATCCTGAAAAGGATGC...GACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR GCA 90 bp GACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTGGACACTGGCATACATaGTTATTCCACAGACATAGT +
Preference number: 4 (lower is better)
Translates to: DFSFNREAACRSQARASCGHWHT*LFHRHS
Trigger: ACTATGTCTGTGGAATAAGCATGTATGCCAGTGTCC...ACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 90 bp CGCGGCGGGTGCTGGACACCTCCGAGCCAGTGCCCTCCAGTAGCTTaGCCACGAAGCCCACGCCCGCCGAACGCAGCAGGCCGCCGCCCG +
Preference number: 5 (lower is better)
Translates to: RGGCWTPPSQCPPVA*PRSPRPPNAAGRRP
Trigger: CGGGCGGCGGCCTGCTGCGTTCGGCGGGCGTGGGCTTCGTGGTCAAGCTACTGGAGGGCACTGGCTCGGAGGTGTCCAGCACCCGCCGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS GCA 90 bp GGCGGCCGGTGCGGCGACTACGGCGGAAGCGCCGAGCCTGCAGCCTaGGCCCGATGTCAGAGTAGCTGGCCACCACCGCTAGGAAGGGCA +
Preference number: 5 (lower is better)
Translates to: GGRCGDYGGSAEPAA*ARCQSSWPPPLGRA
Trigger: TGCCCTTCCTAGCGGTGGTGGCCAGCTACTCTGACATCGGGCGCAGGCTGCAGGCTCGGCGCTTCCGCCGTAGTCGCCGCACCGGCCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 90 bp CGTACAGCACCGGGTTCACGCTGCTGCTCAGGAAGGCCAGCGCGATaGGCACATAGCGGGCCAGCCTCAGACGCTGCCCCGCAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: RTAPGSRCCSGRPAR*AHSGPASDAAPQGC
Trigger: ACAGCCCTGCGGGGCAGCGTCTGAGGCTGGCCCGCTATGTGCTCATCGCGCTGGCCTTCCTGAGCAGCAGCGTGAACCCGGTGCTGTACG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CAA 90 bp AGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCCCTGACTTGCCCGTGCCCTCCAGTAGCTaGACCACGAAGCCCACGCCC +
Preference number: 5 (lower is better)
Translates to: SCLQKPGQSILSLCPDLPVPSSS*TTKPTP
Trigger: GGGCGTGGGCTTCGTGGTCAAGCTACTGGAGGGCAC...GGGCAAGTCAGGGCAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CCA 90 bp ATGCCTGCCAGCACCCATCGGGCAAAGGCCTTAGTACGAACCTTTTaGGACATAAAGGGGCGGGCCACTGCCAGTGATCGGTCCAGACTC +
Preference number: 5 (lower is better)
Translates to: MPASTHRAKALVRTF*DIKGRATASDRSRL
Trigger: GAGTCTGGACCGATCACTGGCAGTGGCCCGCCCCTTTATGTCCCAAAAGGTTCGTACTAAGGCCTTTGCCCGATGGGTGCTGGCAGGCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 90 bp ACACAGCCAAGTCGGCCAGGGCCAAGTTCAGCACCAGCAGGGCGGTaGCCGTGCGTTTCTGCATCCTTTTCAGGATGCTCCACACTACAA +
Preference number: 5 (lower is better)
Translates to: TQPSRPGPSSAPAGR*PCVSASFSGCSTLQ
Trigger: TTGTAGTGTGGAGCATCCTGAAAAGGATGCAGAAACGCACGGTCACCGCCCTGCTGGTGCTGAACTTGGCCCTGGCCGACTTGGCTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CAA 90 bp ACTTTAGTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCCCCGCAGGGCTGTTCTaGTCCCAGCCGGCCACTGTG +
Preference number: 5 (lower is better)
Translates to: TLVLIVKLPAEARPEHPVPAGLF*SQPATV
Trigger: CACAGTGGCCGGCTGGGACAAGAACAGCCCTGCGGG...GACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAACTAAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS GCA 90 bp GCCAGGGCCAAGTTCAGCACCAGCAGGGCGGTGACCGTGCGTTTCTaGATCCTTTTCAGGATGCTCCACACTACAAAGCTATTGCCAGGA +
Preference number: 5 (lower is better)
Translates to: ARAKFSTSRAVTVRF*ILFRMLHTTKLLPG
Trigger: TCCTGGCAATAGCTTTGTAGTGTGGAGCATCCTGAAAAGGATGCAGAAACGCACGGTCACCGCCCTGCTGGTGCTGAACTTGGCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS GCA 90 bp CACAAGGACCGGTATGGCCAGCAGAAAAGACACCACCCAGATGCCTaGCAGCACCCATCGGGCAAAGGCCTTAGTACGAACCTTTTGGGA +
Preference number: 5 (lower is better)
Translates to: HKDRYGQQKRHHPDA*QHPSGKGLSTNLLG
Trigger: TCCCAAAAGGTTCGTACTAAGGCCTTTGCCCGATGGGTGCTGGCAGGCATCTGGGTGGTGTCTTTTCTGCTGGCCATACCGGTCCTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CCA 90 bp CGGCAACCCATCTCTCTAAAACTCCAGGTGCCTCGAGCCAGAAAGTaGAGGAAAAAGGGAGCAGTGAGCAACACAGCCAAGTCGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RQPISLKLQVPRARK*RKKGAVSNTAKSAR
Trigger: CCTGGCCGACTTGGCTGTGTTGCTCACTGCTCCCTTTTTCCTCCACTTTCTGGCTCGAGGCACCTGGAGTTTTAGAGAGATGGGTTGCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 90 bp CAGAGTAGCTGGCCACCACCGCTAGGAAGGGCAGCAGGAAGCCCGTaGTGGCTTCGAAGAGCAGATGGAAGACTTTATGCTCTTTGTTGG +
Preference number: 5 (lower is better)
Translates to: QSSWPPPLGRAAGSP*WLRRADGRLYALCW
Trigger: CCAACAAAGAGCATAAAGTCTTCCATCTGCTCTTCGAAGCCATCACGGGCTTCCTGCTGCCCTTCCTAGCGGTGGTGGCCAGCTACTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CAA 90 bp GTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCACACTACAAAGCTATaGCCAGGAAGCCCCACAGCC +
Preference number: 5 (lower is better)
Translates to: VLIVKLPAEARPEHPVSLHTTKL*PGSPTA
Trigger: GGCTGTGGGGCTTCCTGGCAATAGCTTTGTAGTGTG...CAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CCA 90 bp GAGTCCTGTTGTTCCATTTTACTGTACGGTACACAAGGACCGGTATaGCCAGCAGAAAAGACACCACCCAGATGCCTGCCAGCACCCATC +
Preference number: 5 (lower is better)
Translates to: ESCCSILLYGTQGPV*PAEKTPPRCLPAPI
Trigger: GATGGGTGCTGGCAGGCATCTGGGTGGTGTCTTTTCTGCTGGCCATACCGGTCCTTGTGTACCGTACAGTAAAATGGAACAACAGGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 90 bp CTTAGTACGAACCTTTTGGGACATAAAGGGGCGGGCCACTGCCAGTaGTCGGTCCAGACTCATGATGGTTATAAGCAGGACACTGGCATA +
Preference number: 5 (lower is better)
Translates to: LSTNLLGHKGAGHCQ*SVQTHDGYKQDTGI
Trigger: TATGCCAGTGTCCTGCTTATAACCATCATGAGTCTGGACCGATCACTGGCAGTGGCCCGCCCCTTTATGTCCCAAAAGGTTCGTACTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS-3UTR CAA 90 bp GTTTTAATCGTGAAGCTGCCTGCAGAAGCCAGGCCAGAGCATCCTGTCTCTCTGCAGATCAGAGTCCTGTaGTTCCATTTTACTGTACGG +
Preference number: 5 (lower is better)
Translates to: VLIVKLPAEARPEHPVSLQIRVL*FHFTVR
Trigger: CCGTACAGTAAAATGGAACAACAGGACTCTGATCTG...CAGAGAGACAGGATGCTCTGGCCTGGCTTCTGCAGGCAGCTTCACGATTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CAA 90 bp CCGCGGCGGGTGCTGGACACCTCCGAGCCAGTGCCCTCCAGTAGCTaGACCACGAAGCCCACGCCCGCCGAACGCAGCAGGCCGCCGCCC +
Preference number: 6 (lower is better)
Translates to: PRRVLDTSEPVPSSS*TTKPTPAERSRPPP
Trigger: GGGCGGCGGCCTGCTGCGTTCGGCGGGCGTGGGCTTCGTGGTCAAGCTACTGGAGGGCACTGGCTCGGAGGTGTCCAGCACCCGCCGCGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS GCA 72 bp CCTTCGGGGTCTGGACCAGAGTGCCCCCGCGGCGGGTaGTGGACACCTCCGAGCCAGTGCCCTCCAGTAGCT +
Preference number: 6 (lower is better)
Translates to: PSGSGPECPRGG*WTPPSQCPPVA
Trigger: AGCTACTGGAGGGCACTGGCTCGGAGGTGTCCAGCACCCGCCGCGGGGGCACTCTGGTCCAGACCCCGAAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 72 bp CCGGGTTCACGCTGCTGCTCAGGAAGGCCAGCGCGATaGGCACATAGCGGGCCAGCCTCAGACGCTGCCCCG +
Preference number: 6 (lower is better)
Translates to: PGSRCCSGRPAR*AHSGPASDAAP
Trigger: CGGGGCAGCGTCTGAGGCTGGCCCGCTATGTGCTCATCGCGCTGGCCTTCCTGAGCAGCAGCGTGAACCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS GCA 72 bp TGCGGCGACTACGGCGGAAGCGCCGAGCCTGCAGCCTaGGCCCGATGTCAGAGTAGCTGGCCACCACCGCTA +
Preference number: 6 (lower is better)
Translates to: CGDYGGSAEPAA*ARCQSSWPPPL
Trigger: TAGCGGTGGTGGCCAGCTACTCTGACATCGGGCGCAGGCTGCAGGCTCGGCGCTTCCGCCGTAGTCGCCGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CCA 72 bp GCCGAGCCTGCAGCCTGCGCCCGATGTCAGAGTAGCTaGCCACCACCGCTAGGAAGGGCAGCAGGAAGCCCG +
Preference number: 6 (lower is better)
Translates to: AEPAACARCQSS*PPPLGRAAGSP
Trigger: CGGGCTTCCTGCTGCCCTTCCTAGCGGTGGTGGCCAGCTACTCTGACATCGGGCGCAGGCTGCAGGCTCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CAA 72 bp GTGCTGGACACCTCCGAGCCAGTGCCCTCCAGTAGCTaGACCACGAAGCCCACGCCCGCCGAACGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: VLDTSEPVPSSS*TTKPTPAERSR
Trigger: CCTGCTGCGTTCGGCGGGCGTGGGCTTCGTGGTCAAGCTACTGGAGGGCACTGGCTCGGAGGTGTCCAGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 72 bp AGTCGGCCAGGGCCAAGTTCAGCACCAGCAGGGCGGTaGCCGTGCGTTTCTGCATCCTTTTCAGGATGCTCC +
Preference number: 6 (lower is better)
Translates to: SRPGPSSAPAGR*PCVSASFSGCS
Trigger: GGAGCATCCTGAAAAGGATGCAGAAACGCACGGTCACCGCCCTGCTGGTGCTGAACTTGGCCCTGGCCGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CCA 72 bp AGCACCCATCGGGCAAAGGCCTTAGTACGAACCTTTTaGGACATAAAGGGGCGGGCCACTGCCAGTGATCGG +
Preference number: 6 (lower is better)
Translates to: STHRAKALVRTF*DIKGRATASDR
Trigger: CCGATCACTGGCAGTGGCCCGCCCCTTTATGTCCCAAAAGGTTCGTACTAAGGCCTTTGCCCGATGGGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 72 bp TGCCTCGAGCCAGAAAGTGGAGGAAAAAGGGAGCAGTaGGCAACACAGCCAAGTCGGCCAGGGCCAAGTTCA +
Preference number: 6 (lower is better)
Translates to: CLEPESGGKREQ*ATQPSRPGPSS
Trigger: TGAACTTGGCCCTGGCCGACTTGGCTGTGTTGCTCACTGCTCCCTTTTTCCTCCACTTTCTGGCTCGAGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 72 bp TGGCCACCACCGCTAGGAAGGGCAGCAGGAAGCCCGTaGTGGCTTCGAAGAGCAGATGGAAGACTTTATGCT +
Preference number: 6 (lower is better)
Translates to: WPPPLGRAAGSP*WLRRADGRLYA
Trigger: AGCATAAAGTCTTCCATCTGCTCTTCGAAGCCATCACGGGCTTCCTGCTGCCCTTCCTAGCGGTGGTGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS TCA 72 bp AACCTTTTGGGACATAAAGGGGCGGGCCACTGCCAGTaGTCGGTCCAGACTCATGATGGTTATAAGCAGGAC +
Preference number: 6 (lower is better)
Translates to: NLLGHKGAGHCQ*SVQTHDGYKQD
Trigger: GTCCTGCTTATAACCATCATGAGTCTGGACCGATCACTGGCAGTGGCCCGCCCCTTTATGTCCCAAAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS GCA 72 bp AAGTTCAGCACCAGCAGGGCGGTGACCGTGCGTTTCTaGATCCTTTTCAGGATGCTCCACACTACAAAGCTA +
Preference number: 6 (lower is better)
Translates to: KFSTSRAVTVRF*ILFRMLHTTKL
Trigger: TAGCTTTGTAGTGTGGAGCATCCTGAAAAGGATGCAGAAACGCACGGTCACCGCCCTGCTGGTGCTGAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4
CDS CCA 72 bp TGTTCCATTTTACTGTACGGTACACAAGGACCGGTATaGCCAGCAGAAAAGACACCACCCAGATGCCTGCCA +
Preference number: 6 (lower is better)
Translates to: CSILLYGTQGPV*PAEKTPPRCLP
Trigger: TGGCAGGCATCTGGGTGGTGTCTTTTCTGCTGGCCATACCGGTCCTTGTGTACCGTACAGTAAAATGGAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057569.4