Pregenerated sensors for LTB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024399Ensembl transcript IDs: ENSMUST00000025262.6, ENSMUST00000173600.2
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCCCCTGTACCCGACGTGGCAGTAGAGGTAATAGACGCCGTCCTGTaGCAGCGCCAGCCCGTGGGTGGGGGAGAACTGCGCGCCGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: APVPDVAVEVIDAVL*QRQPVGGGELRAAP Trigger: AGGAGCGGCGCGCAGTTCTCCCCCACCCACGGGCTGGCGCTGCCACAGGACGGCGTCTATTACCTCTACTGCCACGTCGGGTACAGGGGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 90 bp | GCCTCCCAGCTGAGCCCTTGCCCACTCATCCAAGCGCCTATGAGGTaGGCAGCAGGGAGCTCAGGGTTGAGGTCAGTTTCTGGTTCCCCC | + |
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Preference number: 5 (lower is better) Translates to: ASQLSPCPLIQAPMR*AAGSSGLRSVSGSP Trigger: GGGGGAACCAGAAACTGACCTCAACCCTGAGCTCCCTGCTGCCCACCTCATAGGCGCTTGGATGAGTGGGCAAGGGCTCAGCTGGGAGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 90 bp | AGTAGAGGTAATAGACGCCGTCCTGTGGCAGCGCCAGCCCGTGGGTaGGGGAGAACTGCGCGCCGCTCCTCAGAAACGCTTCTTCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SRGNRRRPVAAPARG*GRTARRSSETLLLG Trigger: GCCAAGAAGAAGCGTTTCTGAGGAGCGGCGCGCAGTTCTCCCCCACCCACGGGCTGGCGCTGCCACAGGACGGCGTCTATTACCTCTACT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS GCA 90 bp | TGGTGTAGAATCCGCAGCTGGAGACAGGATGGTCATCCATGCAGATaGCTCCCGAGAGGACTGCGCAACAGGGCCCTGGGATGTGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: WCRIRSWRQDGHPCR*LPRGLRNRALGCGG Trigger: GCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGAGGCATCTGCATGGATGACCATCCTGTCTCCAGCTGCGGATTCTACACCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS GCA 90 bp | CTCCTCAGAAACGCTTCTTCTTGGCTCGCCTCCCAGCTGAGCCCTTaGCCACTCATCCAAGCGCCTATGAGGTGGGCAGCAGGGAGCTCA | + |
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Preference number: 5 (lower is better) Translates to: LLRNASSWLASQLSP*PLIQAPMRWAAGSS Trigger: TGAGCTCCCTGCTGCCCACCTCATAGGCGCTTGGATGAGTGGGCAAGGGCTCAGCTGGGAGGCGAGCCAAGAAGAAGCGTTTCTGAGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS GCA 90 bp | GCTGGAGACAGGATGGTCATCCATGCAGATGCCTCCCGAGAGGACTaGGCAACAGGGCCCTGGGATGTGGAGGCTAGATTCCTGGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: AGDRMVIHADASRED*ATGPWDVEARFLEA Trigger: TGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGAGGCATCTGCATGGATGACCATCCTGTCTCCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS CCA 90 bp | GAGAGGACTGCGCAACAGGGCCCTGGGATGTGGAGGCTAGATTCCTaGAAGCATTGGATCTCTGAGGATGCAGACGGGGGTCAGGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: ERTAQQGPGMWRLDS*KHWISEDADGGQES Trigger: AGACTCCTGACCCCCGTCTGCATCCTCAGAGATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS CCA 90 bp | ATGCAGATGCCTCCCGAGAGGACTGCGCAACAGGGCCCTGGGATGTaGAGGCTAGATTCCTGGAAGCATTGGATCTCTGAGGATGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: MQMPPERTAQQGPGM*RLDSWKHWISEDAD Trigger: GTCTGCATCCTCAGAGATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGAGGCATCTGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS TCA 90 bp | GCACGACGGTTTGCTGTCATCCAGTCTTTTCTGAGCCTGTGCTCCTaGGCCAATGATCTTCTCAACCCGACGTCCCTGATCCTGCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: ARRFAVIQSFLSLCS*ANDLLNPTSLILRH Trigger: GTGCCGCAGGATCAGGGACGTCGGGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATGACAGCAAACCGTCGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS TCA 90 bp | GTTTGCTGTCATCCAGTCTTTTCTGAGCCTGTGCTCCTGAGCCAATaGTCTTCTCAACCCGACGTCCCTGATCCTGCGGCACCAAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VCCHPVFSEPVLLSQ*SSQPDVPDPAAPRP Trigger: TGGCCTTGGTGCCGCAGGATCAGGGACGTCGGGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATGACAGCAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS TCA 90 bp | GGTGAGGGCAAGATGCACGACGGTTTGCTGTCATCCAGTCTTTTCTaGGCCTGTGCTCCTGAGCCAATGATCTTCTCAACCCGACGTCCC | + |
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Preference number: 5 (lower is better) Translates to: GEGKMHDGLLSSSLF*ACAPEPMIFSTRRP Trigger: GGGACGTCGGGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATGACAGCAAACCGTCGTGCATCTTGCCCTCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS GCA 72 bp | GCGAGCGAGCACGGCTTCGGCCGGCAGGGGGCGTCCTaGCCCTGTACCCGACGTGGCAGTAGAGGTAATAGA | + |
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Preference number: 6 (lower is better) Translates to: ASEHGFGRQGAS*PCTRRGSRGNR Trigger: TCTATTACCTCTACTGCCACGTCGGGTACAGGGGCAGGACGCCCCCTGCCGGCCGAAGCCGTGCTCGCTCGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 72 bp | CCCGACGTGGCAGTAGAGGTAATAGACGCCGTCCTGTaGCAGCGCCAGCCCGTGGGTGGGGGAGAACTGCGC | + |
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Preference number: 6 (lower is better) Translates to: PDVAVEVIDAVL*QRQPVGGGELR Trigger: GCGCAGTTCTCCCCCACCCACGGGCTGGCGCTGCCACAGGACGGCGTCTATTACCTCTACTGCCACGTCGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 72 bp | AATAGACGCCGTCCTGTGGCAGCGCCAGCCCGTGGGTaGGGGAGAACTGCGCGCCGCTCCTCAGAAACGCTT | + |
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Preference number: 6 (lower is better) Translates to: NRRRPVAAPARG*GRTARRSSETL Trigger: AAGCGTTTCTGAGGAGCGGCGCGCAGTTCTCCCCCACCCACGGGCTGGCGCTGCCACAGGACGGCGTCTATT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CAA 90 bp | GCTCCTCAGAAACGCTTCTTCTTGGCTCGCCTCCCAGCTGAGCCCTaGCCCACTCATCCAAGCGCCTATGAGGTGGGCAGCAGGGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: APQKRFFLARLPAEP*PTHPSAYEVGSREL Trigger: GAGCTCCCTGCTGCCCACCTCATAGGCGCTTGGATGAGTGGGCAAGGGCTCAGCTGGGAGGCGAGCCAAGAAGAAGCGTTTCTGAGGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 72 bp | GAGAACTGCGCGCCGCTCCTCAGAAACGCTTCTTCTTaGCTCGCCTCCCAGCTGAGCCCTTGCCCACTCATC | + |
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Preference number: 6 (lower is better) Translates to: ENCAPLLRNASS*LASQLSPCPLI Trigger: GATGAGTGGGCAAGGGCTCAGCTGGGAGGCGAGCCAAGAAGAAGCGTTTCTGAGGAGCGGCGCGCAGTTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CAA 72 bp | GGAGAACTGCGCGCCGCTCCTCAGAAACGCTTCTTCTaGGCTCGCCTCCCAGCTGAGCCCTTGCCCACTCAT | + |
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Preference number: 6 (lower is better) Translates to: GELRAAPQKRFF*ARLPAEPLPTH Trigger: ATGAGTGGGCAAGGGCTCAGCTGGGAGGCGAGCCAAGAAGAAGCGTTTCTGAGGAGCGGCGCGCAGTTCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 72 bp | CCTCCCGAGAGGACTGCGCAACAGGGCCCTGGGATGTaGAGGCTAGATTCCTGGAAGCATTGGATCTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: PPERTAQQGPGM*RLDSWKHWISE Trigger: CTCAGAGATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS CCA 72 bp | GCAGATGCCTCCCGAGAGGACTGCGCAACAGGGCCCTaGGATGTGGAGGCTAGATTCCTGGAAGCATTGGAT | + |
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Preference number: 6 (lower is better) Translates to: ADASREDCATGP*DVEARFLEALD Trigger: ATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCCCTGTTGCGCAGTCCTCTCGGGAGGCATCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS CCA 72 bp | GGCCCTGGGATGTGGAGGCTAGATTCCTGGAAGCATTaGATCTCTGAGGATGCAGACGGGGGTCAGGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: GPGMWRLDSWKH*ISEDADGGQES Trigger: AGACTCCTGACCCCCGTCTGCATCCTCAGAGATCCAATGCTTCCAGGAATCTAGCCTCCACATCCCAGGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS CCA 72 bp | CTGTTGAACCCCTGGATCTGGTGTAGAATCCGCAGCTaGAGACAGGATGGTCATCCATGCAGATGCCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: LLNPWIWCRIRS*RQDGHPCRCLP Trigger: CGGGAGGCATCTGCATGGATGACCATCCTGTCTCCAGCTGCGGATTCTACACCAGATCCAGGGGTTCAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS TCA 72 bp | CATCCAGTCTTTTCTGAGCCTGTGCTCCTGAGCCAATaGTCTTCTCAACCCGACGTCCCTGATCCTGCGGCA | + |
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Preference number: 6 (lower is better) Translates to: HPVFSEPVLLSQ*SSQPDVPDPAA Trigger: TGCCGCAGGATCAGGGACGTCGGGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS CAA 72 bp | GTTGAGGTCAGTTTCTGGTTCCCCCTTTGGCAGCTGTaGAACCCCTGGATCTGGTGTAGAATCCGCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: VEVSFWFPLWQL*NPWIWCRIRSW Trigger: CCAGCTGCGGATTCTACACCAGATCCAGGGGTTCAACAGCTGCCAAAGGGGGAACCAGAAACTGACCTCAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS CCA 72 bp | GAGCTCAGGGTTGAGGTCAGTTTCTGGTTCCCCCTTTaGCAGCTGTTGAACCCCTGGATCTGGTGTAGAATC | + |
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Preference number: 6 (lower is better) Translates to: ELRVEVSFWFPL*QLLNPWIWCRI Trigger: GATTCTACACCAGATCCAGGGGTTCAACAGCTGCCAAAGGGGGAACCAGAAACTGACCTCAACCCTGAGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025262.6 ENSMUST00000173600.2 |
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| CDS TCA 72 bp | TTTGCTGTCATCCAGTCTTTTCTGAGCCTGTGCTCCTaGGCCAATGATCTTCTCAACCCGACGTCCCTGATC | + |
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Preference number: 6 (lower is better) Translates to: FAVIQSFLSLCS*ANDLLNPTSLI Trigger: GATCAGGGACGTCGGGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATGACAGCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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| CDS TCA 72 bp | AAGATGCACGACGGTTTGCTGTCATCCAGTCTTTTCTaGGCCTGTGCTCCTGAGCCAATGATCTTCTCAACC | + |
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Preference number: 6 (lower is better) Translates to: KMHDGLLSSSLF*ACAPEPMIFST Trigger: GGTTGAGAAGATCATTGGCTCAGGAGCACAGGCTCAGAAAAGACTGGATGACAGCAAACCGTCGTGCATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025262.6 |
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