Pregenerated sensors for LTA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024402Ensembl transcript IDs: ENSMUST00000025266.6
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCTGTGGATGTCTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTaGTTTCTTCTAGAACCCCTTGGTCACCCACATCTAATTCTCTCG | + |
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Preference number: 1 (lower is better) Translates to: PCGCLAKQWLAFRAS*FLLEPLGHPHLILS Trigger: CGAGAGAATTAGATGTGGGTGACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAGACATCCACAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR-3UTR CCA 90 bp | AGCTTCGTGCTTTCTTCTAGAACCCCTTGGTCACCCACATCTAATTCTCTCGCCCATCTGGAGTGGCCCTaGGGAAGATGTAGTCCCCTG | + |
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Preference number: 2 (lower is better) Translates to: SFVLSSRTPWSPTSNSLAHLEWP*GRCSPL Trigger: CAGGGGACTACATCTTCCCCAGGGCCACTCCAGATG...GGCGAGAGAATTAGATGTGGGTGACCAAGGGGTTCTAGAAGAAAGCACGAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR-3UTR TCA 90 bp | GCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGGTGAGACTGTGGGGATGTaGCCCTTGAAACAACGGTCA | + |
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Preference number: 2 (lower is better) Translates to: AKQWLAFRASCFLLEPLGETVGM*PLKQRS Trigger: TGACCGTTGTTTCAAGGGTCACATCCCCACAGTCTC...ACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR-3UTR CCA 90 bp | TCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAAAAACCCTGCTCGTCAGGATGGAGGCCTaGAATCCAATTCTTGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: SLLHVQVSVRPRPTKTLLVRMEA*NPILGF Trigger: AAACCCAAGAATTGGATTCCAGGCCTCCATCCTGAC...GAGCAGGGTTTTTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR-3UTR CCA 90 bp | GCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGGTTTTAGTGGGGAAGGCTaGAGACTGTGGGGATGTGAC | + |
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Preference number: 2 (lower is better) Translates to: AKQWLAFRASCFLLEPLGFSGEG*RLWGCD Trigger: GTCACATCCCCACAGTCTCCAGCCTTCCCCACTAAA...ACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR-3UTR GCA 90 bp | AACTTAACTTTTCTCTCCATAAATAGTCAACCTTCCCCTGTTCCCAGCCACCTCGACCCACAAAAACCCTaGTCTGTGCAGGAACTTCTA | + |
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Preference number: 2 (lower is better) Translates to: NLTFLSINSQPSPVPSHLDPQKP*SVQELL Trigger: TAGAAGTTCCTGCACAGAGCAGGGTTTTTGTGGGTC...GAGGTGGCTGGGAACAGGGGAAGGTTGACTATTTATGGAGAGAAAAGTTAAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR CCA 72 bp | AGGCTTGAGTCGTCCCCTGAGCATCTGGAGTGGCCCTaGGGAAGATGTAGTCCCCTGAAGTGTCTCAGACTC | + |
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Preference number: 3 (lower is better) Translates to: RLESSPEHLEWP*GRCSPLKCLRL Trigger: GAGTCTGAGACACTTCAGGGGACTACATCTTCCCCAGGGCCACTCCAGATGCTCAGGGGACGACTCAAGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR TCA 72 bp | AGCATCTGGAGTGGCCCTGGGGAAGATGTAGTCCCCTaGAGTGTCTCAGACTCCCGTGAGAGCTCCAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: SIWSGPGEDVVP*SVSDSRESSRL Trigger: TAACCTGGAGCTCTCACGGGAGTCTGAGACACTTCAGGGGACTACATCTTCCCCAGGGCCACTCCAGATGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR TCA 72 bp | AGTGGGGAAGGCTGGAGACTGTGGGGATGTGACCCTTaGAACAACGGTCAGGATGGAGGCCTGGAATCCAAT | + |
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Preference number: 3 (lower is better) Translates to: SGEGWRLWGCDP*NNGQDGGLESN Trigger: ATTGGATTCCAGGCCTCCATCCTGACCGTTGTTTCAAGGGTCACATCCCCACAGTCTCCAGCCTTCCCCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| 3UTR GCA 72 bp | TGTCTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTaGTTTCTTCTAGAACCCCTTGGTCACCCACATCTA | + |
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Preference number: 3 (lower is better) Translates to: CLAKQWLAFRAS*FLLEPLGHPHL Trigger: TAGATGTGGGTGACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR TCA 90 bp | TCCCATGTCTGTCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAATGGGTCAAGTGCTTCTaGGGGAGTGGATGGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SHVCPSFMSRSLSDLDPQWVKCF*GSGWAV Trigger: GACAGCCCATCCACTCCCTCAGAAGCACTTGACCCA...TTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGACAGACATGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | CCATGTCTGTCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAAAACGTGTGCCAGGTAGATaGGAGTGGGAATGGCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: PCLSLLHVQVSVRPRPTKRVPGR*EWEWPW Trigger: CCAGGGCCATTCCCACTCCCATCTACCTGGCACACG...TTTTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGACAGACATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR TCA 90 bp | TCCCATGTCTGTCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAAGGGTACCCAACAAGGTaGGCAGCAGGTTTCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: SHVCPSFMSRSLSDLDPQGYPTR*AAGFRM Trigger: CATCCTGAAACCTGCTGCTCACCTTGTTGGGTACCC...TTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGACAGACATGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | GCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGGTGTGCTTCTGAGGGAGTaGATGGGCTGTCCTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: AKQWLAFRASCFLLEPLGVLLRE*MGCPGS Trigger: GCTGCCAGGACAGCCCATCCACTCCCTCAGAAGCAC...ACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | CCATGTCTGTCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAAAAAGATGGGAGTGGGAATaGCCCTGGGGGAGCAGCTTT | + |
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Preference number: 4 (lower is better) Translates to: PCLSLLHVQVSVRPRPTKRWEWE*PWGSSF Trigger: AAAGCTGCTCCCCCAGGGCCATTCCCACTCCCATCT...TTTTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGACAGACATGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | CTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTCCAGGTAGATGGGAGTaGGAATGGCCCTGGGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LAKQWLAFRASCFLLEPLPGRWE*EWPWGS Trigger: GCTCCCCCAGGGCCATTCCCACTCCCATCTACCTGG...AAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | CTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGAGATGCCGTCGGTGTaGGTGGACAGCTGGTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LAKQWLAFRASCFLLEPLEMPSV*VDSWSP Trigger: GGGAGACCAGCTGTCCACCCACACCGACGGCATCTC...AAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR TCA 90 bp | CTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGCTGGTCTCCCTTACTaGGCAGGAACACAGCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LAKQWLAFRASCFLLEPLAGLPY*AGTQPP Trigger: AGGGGGCTGTGTTCCTGCTCAGTAAGGGAGACCAGC...AAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR GCA 90 bp | GCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGGTGGAAGACAGGAGGGGTaGCAAGCACCCTCAAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: AKQWLAFRASCFLLEPLGGRQEG*QAPSRG Trigger: ACCTCTTGAGGGTGCTTGGCACCCCTCCTGTCTTCC...ACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR GCA 90 bp | TCCCATGTCTGTCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAACAGAGCAGTGAGTTCTaGTTGCTGGGGTACCCAACA | + |
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Preference number: 4 (lower is better) Translates to: SHVCPSFMSRSLSDLDPQQSSEF*LLGYPT Trigger: TGTTGGGTACCCCAGCAAGCAGAACTCACTGCTCTG...TTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGACAGACATGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | CTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGAGTGGGAATGGCCCTaGGGGAGCAGCTTTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LAKQWLAFRASCFLLEPLEWEWP*GSSFLQ Trigger: CTGGAGAAAGCTGCTCCCCCAGGGCCATTCCCACTC...AAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR TCA 90 bp | GCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGGTTGCTCTCCAGAGCAGTaGGTTCTGCTTGCTGGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: AKQWLAFRASCFLLEPLGCSPEQ*VLLAGV Trigger: TACCCCAGCAAGCAGAACTCACTGCTCTGGAGAGCA...ACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR TCA 90 bp | CTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTCAGACTTCTGCGCACTaGGGAGAGGCACATGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LAKQWLAFRASCFLLEPLQTSAH*GEAHGR Trigger: CCTTCCATGTGCCTCTCCTCAGTGCGCAGAAGTCTG...AAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR GCA 90 bp | TCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAAAAACCCTGCTCTGTGGCAGTGAGTTCTGCTTaGTGGGGTACCCAACAAGGT | + |
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Preference number: 4 (lower is better) Translates to: SFMSRSLSDLDPQKPCSVAVSSA*WGTQQG Trigger: ACCTTGTTGGGTACCCCAGCAAGCAGAACTCACTGC...CACAGAGCAGGGTTTTTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR GCA 90 bp | GCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTGGTGAAAGGCACGATCCGTaGTTGCTCTCCAGAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: AKQWLAFRASCFLLEPLGERHDP*LLSRAV Trigger: CACTGCTCTGGAGAGCAAGCACGGATCGTGCCTTTC...ACCAAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR TCA 90 bp | AAGAGGTTTATTGGGTTTCACAGATGGTGCAGGGGGTCCCTGTGGATGTCTAGCATACACTGCTGGGGCTaGAGTGTAGATGGGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: KRFIGFHRWCRGSLWMSSIHCWG*SVDGRC Trigger: GCATCTCCCATCTACACTTCAGCCCCAGCAGTGTAT...GCTAGACATCCACAGGGACCCCCTGCACCATCTGTGAAACCCAATAAACCTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR GCA 90 bp | AAGAGGTTTATTGGGTTTCACAGATGGTGCAGGGGGTCCCTGTGGATGTCTAGCCAGCAGGTTTCAGGATaGCATGGGTCAAGTGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KRFIGFHRWCRGSLWMSSQQVSG*HGSSAS Trigger: AGAAGCACTTGACCCATGGCATCCTGAAACCTGCTG...GCTAGACATCCACAGGGACCCCCTGCACCATCTGTGAAACCCAATAAACCTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR GCA 90 bp | AAGAGGTTTATTGGGTTTCACAGATGGTGCAGGGGGTCCCTGTGGATGTCTAGCTCAGGAGGGAGTTGTTaGTCAAAGAGAAGCCATGTC | + |
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Preference number: 4 (lower is better) Translates to: KRFIGFHRWCRGSLWMSSSGGSC*SKRSHV Trigger: GACATGGCTTCTCTTTGAGCAACAACTCCCTCCTGA...GCTAGACATCCACAGGGACCCCCTGCACCATCTGTGAAACCCAATAAACCTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CCA 90 bp | AACTTAACTTTTCTCTCCATAAATAGTCAACCTTCCCCTGTTCCCAGCCACCTCCTGAGGAGAGGCACATaGAAGGGGTATTGGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: NLTFLSINSQPSPVPSHLLRRGT*KGYWEE Trigger: TTCCTCCCAATACCCCTTCCATGTGCCTCTCCTCAG...GAGGTGGCTGGGAACAGGGGAAGGTTGACTATTTATGGAGAGAAAAGTTAAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 90 bp | AGCAGCAGGTTTCAGGATGCCATGGGTCAAGTGCTTCTGAGGGAGTaGATGGGCTGTCCTGGCAGCGGAGAAGCGGACACCAGAGAGTCC | + |
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Preference number: 5 (lower is better) Translates to: SSRFQDAMGQVLLRE*MGCPGSGEADTRES Trigger: GGACTCTCTGGTGTCCGCTTCTCCGCTGCCAGGACAGCCCATCCACTCCCTCAGAAGCACTTGACCCATGGCATCCTGAAACCTGCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS TCA 90 bp | AGCAGGAACACAGCCCCCTGGTACATTGAGCGCACCCACGGTCCTTaGAGTCCCGGATACACAGACTTCTGCGCACTGAGGAGAGGCACA | + |
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Preference number: 5 (lower is better) Translates to: SRNTAPWYIERTHGP*SPGYTDFCALRRGT Trigger: TGTGCCTCTCCTCAGTGCGCAGAAGTCTGTGTATCCGGGACTTCAAGGACCGTGGGTGCGCTCAATGTACCAGGGGGCTGTGTTCCTGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS TCA 90 bp | GCACCCACGGTCCTTGAAGTCCCGGATACACAGACTTCTGCGCACTaGGGAGAGGCACATGGAAGGGGTATTGGGAGGAAAAGAGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: APTVLEVPDTQTSAH*GEAHGRGIGRKRAG Trigger: TCCAGCTCTTTTCCTCCCAATACCCCTTCCATGTGCCTCTCCTCAGTGCGCAGAAGTCTGTGTATCCGGGACTTCAAGGACCGTGGGTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 90 bp | AGTGCAAAGGCTCCAAAGAATACACTGCTGGGGCTGAAGTGTAGATaGGAGATGCCGTCGGTGTGGGTGGACAGCTGGTCTCCCTTACTG | + |
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Preference number: 5 (lower is better) Translates to: SAKAPKNTLLGLKCR*EMPSVWVDSWSPLL Trigger: CAGTAAGGGAGACCAGCTGTCCACCCACACCGACGGCATCTCCCATCTACACTTCAGCCCCAGCAGTGTATTCTTTGGAGCCTTTGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS GCA 90 bp | AGTAGACAAAGTAGAGGCCACTGGTGGGGATCAGGAGGGAGTTGTTaGTCAAAGAGAAGCCATGTCGGAGAAAGGCACGATCCGTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: SRQSRGHWWGSGGSC*SKRSHVGERHDPCL Trigger: CAAGCACGGATCGTGCCTTTCTCCGACATGGCTTCTCTTTGAGCAACAACTCCCTCCTGATCCCCACCAGTGGCCTCTACTTTGTCTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 90 bp | CTCCAGAGAAAACCACCTGGGAGTAGACAAAGTAGAGGCCACTGGTaGGGATCAGGAGGGAGTTGTTGCTCAAAGAGAAGCCATGTCGGA | + |
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Preference number: 5 (lower is better) Translates to: LQRKPPGSRQSRGHW*GSGGSCCSKRSHVG Trigger: TCCGACATGGCTTCTCTTTGAGCAACAACTCCCTCCTGATCCCCACCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTTTTCTCTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CAA 90 bp | AGCTTCGTGCTTTCTTCTAGAACCCCTTGGTCACCCACATCTAATTCTCTCGCCAGGCACGATCCGTGCTaGCTCTCCAGAGCAGTGAGT | + |
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Preference number: 5 (lower is better) Translates to: SFVLSSRTPWSPTSNSLARHDPC*LSRAVS Trigger: ACTCACTGCTCTGGAGAGCAAGCACGGATCGTGCCT...GGCGAGAGAATTAGATGTGGGTGACCAAGGGGTTCTAGAAGAAAGCACGAAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CAA 90 bp | CTAGCCAAGCAGTGGCTGGCTTTTAGAGCTTCGTGCTTTCTTCTAGAACCCCTTAGCAGTGAGTTCTGCTaGCTGGGGTACCCAACAAGG | + |
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Preference number: 5 (lower is better) Translates to: LAKQWLAFRASCFLLEPLSSEFC*LGYPTR Trigger: CCTTGTTGGGTACCCCAGCAAGCAGAACTCACTGCT...AAGGGGTTCTAGAAGAAAGCACGAAGCTCTAAAAGCCAGCCACTGCTTGGCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 90 bp | TTTCTCCAGAGAAAACCACCTGGGAGTAGACAAAGTAGAGGCCACTaGTGGGGATCAGGAGGGAGTTGTTGCTCAAAGAGAAGCCATGTC | + |
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Preference number: 5 (lower is better) Translates to: FLQRKPPGSRQSRGH*WGSGGSCCSKRSHV Trigger: GACATGGCTTCTCTTTGAGCAACAACTCCCTCCTGATCCCCACCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTTTTCTCTGGAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS-3UTR CAA 90 bp | CCATGTCTGTCCCTCCTTCATGTCCAGGTCTCTGTCCGACCTAGACCCACAAAAATCAGGAGGGAGTTGTaGCTCAAAGAGAAGCCATGT | + |
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Preference number: 5 (lower is better) Translates to: PCLSLLHVQVSVRPRPTKIRREL*LKEKPC Trigger: ACATGGCTTCTCTTTGAGCAACAACTCCCTCCTGAT...TTTTGTGGGTCTAGGTCGGACAGAGACCTGGACATGAAGGAGGGACAGACATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | GGGTCAAGTGCTTCTGAGGGAGTGGATGGGCTGTCCTaGCAGCGGAGAAGCGGACACCAGAGAGTCCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: GSSASEGVDGLS*QRRSGHQRVPG Trigger: CCCAGGGACTCTCTGGTGTCCGCTTCTCCGCTGCCAGGACAGCCCATCCACTCCCTCAGAAGCACTTGACCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS TCA 72 bp | GCAGCAGGTTTCAGGATGCCATGGGTCAAGTGCTTCTaGGGGAGTGGATGGGCTGTCCTGGCAGCGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: AAGFRMPWVKCF*GSGWAVLAAEK Trigger: CTTCTCCGCTGCCAGGACAGCCCATCCACTCCCTCAGAAGCACTTGACCCATGGCATCCTGAAACCTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | TTTCAGGATGCCATGGGTCAAGTGCTTCTGAGGGAGTaGATGGGCTGTCCTGGCAGCGGAGAAGCGGACACC | + |
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Preference number: 6 (lower is better) Translates to: FQDAMGQVLLRE*MGCPGSGEADT Trigger: GGTGTCCGCTTCTCCGCTGCCAGGACAGCCCATCCACTCCCTCAGAAGCACTTGACCCATGGCATCCTGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | GCTGGACCTCGTGTGCCAGGTAGATGGGAGTGGGAATaGCCCTGGGGGAGCAGCTTTCTCCAGAGAAAACCA | + |
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Preference number: 6 (lower is better) Translates to: AGPRVPGRWEWE*PWGSSFLQRKP Trigger: TGGTTTTCTCTGGAGAAAGCTGCTCCCCCAGGGCCATTCCCACTCCCATCTACCTGGCACACGAGGTCCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS TCA 72 bp | TCCCTTACTGAGCAGGAACACAGCCCCCTGGTACATTaGGCGCACCCACGGTCCTTGAAGTCCCGGATACAC | + |
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Preference number: 6 (lower is better) Translates to: SLTEQEHSPLVH*AHPRSLKSRIH Trigger: GTGTATCCGGGACTTCAAGGACCGTGGGTGCGCTCAATGTACCAGGGGGCTGTGTTCCTGCTCAGTAAGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS GCA 72 bp | TGGGGTACCCAACAAGGTGAGCAGCAGGTTTCAGGATaGCATGGGTCAAGTGCTTCTGAGGGAGTGGATGGG | + |
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Preference number: 6 (lower is better) Translates to: WGTQQGEQQVSG*HGSSASEGVDG Trigger: CCCATCCACTCCCTCAGAAGCACTTGACCCATGGCATCCTGAAACCTGCTGCTCACCTTGTTGGGTACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | CCGTGCTTGCTCTCCAGAGCAGTGAGTTCTGCTTGCTaGGGTACCCAACAAGGTGAGCAGCAGGTTTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PCLLSRAVSSAC*GTQQGEQQVSG Trigger: TCCTGAAACCTGCTGCTCACCTTGTTGGGTACCCCAGCAAGCAGAACTCACTGCTCTGGAGAGCAAGCACGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | GCTCCAAAGAATACACTGCTGGGGCTGAAGTGTAGATaGGAGATGCCGTCGGTGTGGGTGGACAGCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: APKNTLLGLKCR*EMPSVWVDSWS Trigger: AGACCAGCTGTCCACCCACACCGACGGCATCTCCCATCTACACTTCAGCCCCAGCAGTGTATTCTTTGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS TCA 72 bp | AGCAGTGAGTTCTGCTTGCTGGGGTACCCAACAAGGTaGGCAGCAGGTTTCAGGATGCCATGGGTCAAGTGC | + |
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Preference number: 6 (lower is better) Translates to: SSEFCLLGYPTR*AAGFRMPWVKC Trigger: GCACTTGACCCATGGCATCCTGAAACCTGCTGCTCACCTTGTTGGGTACCCCAGCAAGCAGAACTCACTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS GCA 72 bp | GATCCGTGCTTGCTCTCCAGAGCAGTGAGTTCTGCTTaGTGGGGTACCCAACAAGGTGAGCAGCAGGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: DPCLLSRAVSSA*WGTQQGEQQVS Trigger: TGAAACCTGCTGCTCACCTTGTTGGGTACCCCAGCAAGCAGAACTCACTGCTCTGGAGAGCAAGCACGGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CAA 90 bp | ATACACAGACTTCTGCGCACTGAGGAGAGGCACATGGAAGGGGTATaGGGAGGAAAAGAGCTGGACCTCGTGTGCCAGGTAGATGGGAGT | + |
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Preference number: 6 (lower is better) Translates to: IHRLLRTEERHMEGV*GGKELDLVCQVDGS Trigger: ACTCCCATCTACCTGGCACACGAGGTCCAGCTCTTTTCCTCCCAATACCCCTTCCATGTGCCTCTCCTCAGTGCGCAGAAGTCTGTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS TCA 72 bp | GTCCTTGAAGTCCCGGATACACAGACTTCTGCGCACTaGGGAGAGGCACATGGAAGGGGTATTGGGAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VLEVPDTQTSAH*GEAHGRGIGRK Trigger: TTTCCTCCCAATACCCCTTCCATGTGCCTCTCCTCAGTGCGCAGAAGTCTGTGTATCCGGGACTTCAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | AAACCACCTGGGAGTAGACAAAGTAGAGGCCACTGGTaGGGATCAGGAGGGAGTTGTTGCTCAAAGAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: KPPGSRQSRGHW*GSGGSCCSKRS Trigger: GCTTCTCTTTGAGCAACAACTCCCTCCTGATCCCCACCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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| CDS CCA 72 bp | AGAAAACCACCTGGGAGTAGACAAAGTAGAGGCCACTaGTGGGGATCAGGAGGGAGTTGTTGCTCAAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: RKPPGSRQSRGH*WGSGGSCCSKR Trigger: TCTCTTTGAGCAACAACTCCCTCCTGATCCCCACCAGTGGCCTCTACTTTGTCTACTCCCAGGTGGTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025266.6 |
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