Pregenerated sensors for LST1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073412Ensembl transcript IDs: ENSMUST00000097336.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GAAGTGGGGAACCAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCGTGGGGCTCCTGCCCTaGGACCTGGGCATTCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: EVGNQTLLDDHSVTEHAPVGLLP*DLGIPF Trigger: GAAAGGAATGCCCAGGTCTCAGGGCAGGAGCCCCAC...GGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTGGTTCCCCACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR GCA 90 bp | GCAGAAGTGGGGAACCAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACAGCTGCTGGAGAGATaGATAGTGGGGCTCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: AEVGNQTLLDDHSVTEHAQLLER*IVGLLP Trigger: GGGCAGGAGCCCCACTATGCATCTCTCCAGCAGCTG...TGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTGGTTCCCCACTTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR CCA 90 bp | ACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCAGGGCGAGGAGAGCTAAGTGGGTGTGCTCCTaGCGATGCAGGCATAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: TLLDDHSVTEHAPRARRAKWVCS*RCRHSQ Trigger: CTGACTATGCCTGCATCGCCAGGAGCACACCCACTT...AGCTCTCCTCGCCCTGGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR CCA 90 bp | GAAGTGGGGAACCAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCTCCTGCCCTGAGACCTaGGCATTCCTTTCCAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: EVGNQTLLDDHSVTEHAPSCPET*AFLSSL Trigger: GAGACTGGAAAGGAATGCCCAGGTCTCAGGGCAGGA...GGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTGGTTCCCCACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR CCA 90 bp | CAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCAGGGCGAGGAGAATCACTACTGGACACTaGCAGCTGCTGGAGAGATGC | + |
|
Preference number: 4 (lower is better) Translates to: QTLLDDHSVTEHAPRARRITTGH*QLLERC Trigger: GCATCTCTCCAGCAGCTGCCAGTGTCCAGTAGTGAT...TCTCCTCGCCCTGGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR TCA 90 bp | CAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCAGGGCGAGGAGACTTCTTTCATGTCTGTaGTATCACTACTGGACACTG | + |
|
Preference number: 4 (lower is better) Translates to: QTLLDDHSVTEHAPRARRLLSCL*YHYWTL Trigger: CAGTGTCCAGTAGTGATATCACAGACATGAAAGAAG...TCTCCTCGCCCTGGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR GCA 90 bp | AACCAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCAGGGCGAGGGGAAATCATTGGTTGTaGAATTGTTACCAGATCCCA | + |
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Preference number: 4 (lower is better) Translates to: NQTLLDDHSVTEHAPRARGNHWL*NCYQIP Trigger: TGGGATCTGGTAACAATTGCACAACCAATGATTTCC...CCTCGCCCTGGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR CCA 90 bp | AACCAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCAGGGCGAGGTTAGCAGGAAATCATTaGTTGTGCAATTGTTACCAG | + |
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Preference number: 4 (lower is better) Translates to: NQTLLDDHSVTEHAPRARLAGNH*LCNCYQ Trigger: CTGGTAACAATTGCACAACCAATGATTTCCTGCTAA...CCTCGCCCTGGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS-3UTR CAA 90 bp | AACCAGACTTTACTAGATGACCATAGTGTGACTGAGCACGCACCCAGGGCGAGGTCATTGGTTGTGCAATaGTTACCAGATCCCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: NQTLLDDHSVTEHAPRARSLVVQ*LPDPIV Trigger: GACAATGGGATCTGGTAACAATTGCACAACCAATGA...CCTCGCCCTGGGTGCGTGCTCAGTCACACTATGGTCATCTAGTAAAGTCTGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS TCA 72 bp | CAGCTGCTGGAGAGATGCATAGTGGGGCTCCTGCCCTaGGACCTGGGCATTCCTTTCCAGTCTCTTCACTCT | + |
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Preference number: 6 (lower is better) Translates to: QLLERCIVGLLP*DLGIPFQSLHS Trigger: AGAGTGAAGAGACTGGAAAGGAATGCCCAGGTCTCAGGGCAGGAGCCCCACTATGCATCTCTCCAGCAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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| CDS CCA 72 bp | GTCTTCTTTCATGTCTGTGATATCACTACTGGACACTaGCAGCTGCTGGAGAGATGCATAGTGGGGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: VFFHVCDITTGH*QLLERCIVGLL Trigger: CAGGAGCCCCACTATGCATCTCTCCAGCAGCTGCCAGTGTCCAGTAGTGATATCACAGACATGAAAGAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097336.5 |
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