Pregenerated sensors for LSR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001247Ensembl transcript IDs: ENSMUST00000001279.15, ENSMUST00000098553.11, ENSMUST00000108116.10, ENSMUST00000147431.2, ENSMUST00000205961.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCATCGTGGTGGCCGGGTaGGAGCCAGGCGCCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSIVVAG*EPGAPA Trigger: TGCTGGGGCGCCTGGCTCCCACCCGGCCACCACGAT...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCCGCCAGCTGGGCGTTaGGCTGGTTGTCCACGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSPPAGR*AGCPRW Trigger: CCAGCGTGGACAACCAGCTCAACGCCCAGCTGGCGG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGTTGTAGCCGGGGTTaGCAGCCGCCAGCTGGGCGT | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGCSRG*QPPAGR Trigger: ACGCCCAGCTGGCGGCTGGCAACCCCGGCTACAACC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGCACGGTCACCTGGATaGCACTGGCACGGTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSARSPG*HWHGLG Trigger: GCCCAGACCGTGCCAGTGCCATCCAGGTGACCGTGC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGCTGGTTGTCCACGCTaGCAGGGGAGAAGGCGTCGG | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSAGCPR*QGRRRR Trigger: CCGACGCCTTCTCCCCTGCCAGCGTGGACAACCAGC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCGCAGCAGGGGCACCTaGGAGCTGTGGCCACCAACT | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSRSRGT*ELWPPT Trigger: AGTTGGTGGCCACAGCTCCCAGGTGCCCCTGCTGCG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGAGGGTCCCGTGACCTaGAGCCAGCATCCCGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSEGPVT*SQHPED Trigger: ATCCTCGGGATGCTGGCTTCAGGTCACGGGACCCTC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCAGCTGGGCGTTGAGCTaGTTGTCCACGCTGGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSSWALS*LSTLAG Trigger: CCCTGCCAGCGTGGACAACCAGCTCAACGCCCAGCT...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTTGCCAGCCGCCAGCTaGGCGTTGAGCTGGTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSLPAAS*ALSWLS Trigger: GGACAACCAGCTCAACGCCCAGCTGGCGGCTGGCAA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGACGCATGGGAATCATaGCAGGCGGAGGTGGCGGAG | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSDAWES*QAEVAE Trigger: CTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGATGCTTGGCACACCTaGGGTGGCTGCTTTGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSDAWHT*GGCFAS Trigger: GCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGGAGAAGACCTTCCTaGTTCAGTGGAGCCAGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGRRPS*FSGARP Trigger: CGGCCTGGCTCCACTGAATCAGGAAGGTCTTCTCCC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTCTCCCCAGGCCGTCTaGTCGAAGGTCAGGTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSSPQAV*SKVRSA Trigger: TGCTGACCTGACCTTCGAGCAGACGGCCTGGGGAGA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCAGAGTAAGGCGGAGGTaGTGGGGGATAGTGGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSRVRRR*WGIVAL Trigger: GAGGGCCACTATCCCCCAGCACCTCCGCCTTACTCT...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTCAGGCACGGTCACCTaGATGGCACTGGCACGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSSGTVT*MALARS Trigger: AGACCGTGCCAGTGCCATCCAGGTGACCGTGCCTGA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGACTCCGAGGGGAGTaGCGATTCCACTCCTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGLRGE*RFHSSS Trigger: GGATGAGGAGTGGAATCGCCACTCCCCTCGGAGTCC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCATCGCTGACGGGATCTaGGGTCAGCACGTGGATCCC | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSIADGI*GQHVDP Trigger: GGGATCCACGTGCTGACCCCAGATCCCGTCAGCGAT...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGCTGTGGCCACCAACTaGGCTGGTCCTGTCAAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSAVATN*AGPVKV Trigger: GACTTTGACAGGACCAGCTCAGTTGGTGGCCACAGC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCCAGGGTCACAGCATTaGCCTGTTTGGTGGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSPGSQH*PVWWPP Trigger: TGGTGGCCACCAAACAGGGCAATGCTGTGACCCTGG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTGCTGGGGGCATAGATaGTTGGCACACCTGAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSCWGHR*LAHLRW Trigger: CCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTTCCCATCCAGATCTTaGGCTGAGACCACGGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSFPSRS*AETTEQ Trigger: CTGCTCCGTGGTCTCAGCCCAAGATCTGGATGGGAA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTTGGCACACCTGAGGTaGCTGCTTTGCCAGCAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSLAHLR*LLCQQH Trigger: ATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGCCACCAACTGAGCTaGTCCTGTCAAAGTCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGHQLS*SCQSLQ Trigger: CTGGAGACTTTGACAGGACCAGCTCAGTTGGTGGCC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCAGGTTACTTCACTCATaGCCCGTTCCACTCGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSRLLHS*PVPLGH Trigger: ATGGCCGAGTGGAACGGGCCATGAGTGAAGTAACCT...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCATCCAGATCTTGGGCTaGGACCACGGAGCAGTAATA | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSIQILG*DHGAVI Trigger: TATTACTGCTCCGTGGTCTCAGCCCAAGATCTGGAT...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR TCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCATAAACAAGGACAATaGGCTCTGCGTACGCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSHKQGQ*ALRTPR Trigger: ACGAGGCGTACGCAGAGCTCATTGTCCTTGTTTATG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTGCTCATCTGGTAGGTaGAGTGTAGTGTCACTGGCT | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSCSSGR*SVVSLA Trigger: AGCCAGTGACACTACACTGCACCTACCAGATGAGCA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR GCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCTGAGGTGGCTGCTTTaGCAGCAGCATAAACAAGGA | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSLRWLL*QQHKQG Trigger: TCCTTGTTTATGCTGCTGGCAAAGCAGCCACCTCAG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGCACTGGCACGGTCTaGGCAGTAAATGATGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGTGTV*AVNDEK Trigger: TTTCTCATCATTTACTGCCCAGACCGTGCCAGTGCC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTGTAGTGTCACTGGCTaGAACAGGATCACTACGTGG | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSCSVTG*NRITTW Trigger: CCACGTAGTGATCCTGTTCCAGCCAGTGACACTACA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CCA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGGAAGGATCGAAGTTaGCTAGCTCCTTCTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGKDRS*LAPSPY Trigger: ATATGGAGAAGGAGCTAGCCAACTTCGATCCTTCCC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS GCA 90 bp | ATCGTCGGGGTCATAGAGGTCATCCCGGCTGCGACTTCTCGGAGGTaGATAGGCCCGCCCTCTCCGTCCACTACTTGGGGGAGAAGACCT | + |
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Preference number: 5 (lower is better) Translates to: IVGVIEVIPAATSRR*IGPPSPSTTWGRRP Trigger: AGGTCTTCTCCCCCAAGTAGTGGACGGAGAGGGCGGGCCTATGCACCTCCGAGAAGTCGCAGCCGGGATGACCTCTATGACCCCGACGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 90 bp | ATCCACTTCACGCAGCAGGGGCACCTGGGAGCTGTGGCCACCAACTaGGCTGGTCCTGTCAAAGTCTCCAGGGTACCCATAGGGAGGACG | + |
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Preference number: 5 (lower is better) Translates to: IHFTQQGHLGAVATN*AGPVKVSRVPIGRT Trigger: CGTCCTCCCTATGGGTACCCTGGAGACTTTGACAGGACCAGCTCAGTTGGTGGCCACAGCTCCCAGGTGCCCCTGCTGCGTGAAGTGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 90 bp | TACTTGGGGGAGAAGACCTTCCTGATTCAGTGGAGCCAGGCCGGTTaGTGTCATCTAGAGCATCCACAGAGCGGGCCCGAGGCCGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: YLGEKTFLIQWSQAG*CHLEHPQSGPEAAQ Trigger: CTGGGCGGCCTCGGGCCCGCTCTGTGGATGCTCTAGATGACATCAACCGGCCTGGCTCCACTGAATCAGGAAGGTCTTCTCCCCCAAGTA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS GCA 90 bp | CAGGCGGAGGTGGCGGAGTCTTGGCAGGAGAGAGGTGGGTATAGATaGTGGGGGCATAGATGCTTGGCACACCTGAGGTGGCTGCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: QAEVAESWQERGGYR*WGHRCLAHLRWLLC Trigger: GCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACCTCTCTCCTGCCAAGACTCCGCCACCTCCGCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS GCA 90 bp | CCGCTCCCTCGAGGCCTGCGAGTCAGTCTCAGAGTAAGGCGGAGGTaGTGGGGGATAGTGGCCCTCCTCTTCTTCTTCTTCTTCCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: PLPRGLRVSLRVRRR*WGIVALLFFFFFLP Trigger: AGGGAGGAAGAAGAAGAAGAAGAGGAGGGCCACTATCCCCCAGCACCTCCGCCTTACTCTGAGACTGACTCGCAGGCCTCGAGGGAGCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | GCGGAGGTGGCGGAGTCTTGGCAGGAGAGAGGTGGGTATAGATGCTaGGGGCATAGATGCTTGGCACACCTGAGGTGGCTGCTTTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: AEVAESWQERGGYRC*GHRCLAHLRWLLCQ Trigger: CTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACCTCTCTCCTGCCAAGACTCCGCCACCTCCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | GCCGAGATCGCCAGTCATCTTCATGGAGGGAGGTTACTTCACTCATaGCCCGTTCCACTCGGCCATTGGGAGGGCCAGGCCGGGAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: AEIASHLHGGRLLHS*PVPLGHWEGQAGKD Trigger: ATCCTTCCCGGCCTGGCCCTCCCAATGGCCGAGTGGAACGGGCCATGAGTGAAGTAACCTCCCTCCATGAAGATGACTGGCGATCTCGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | AGCTGGTCCTGTCAAAGTCTCCAGGGTACCCATAGGGAGGACGCATaGGAATCATGGCAGGCGGAGGTGGCGGAGTCTTGGCAGGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: SWSCQSLQGTHREDA*ESWQAEVAESWQER Trigger: TCTCTCCTGCCAAGACTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTCCTCCCTATGGGTACCCTGGAGACTTTGACAGGACCAGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | GTGAGGGCAGGAGCCCTGGAAGGCCGAGATCGCCAGTCATCTTCATaGAGGGAGGTTACTTCACTCATGGCCCGTTCCACTCGGCCATTG | + |
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Preference number: 5 (lower is better) Translates to: VRAGALEGRDRQSSS*REVTSLMARSTRPL Trigger: CAATGGCCGAGTGGAACGGGCCATGAGTGAAGTAACCTCCCTCCATGAAGATGACTGGCGATCTCGGCCTTCCAGGGCTCCTGCCCTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | TGTCAAAGTCTCCAGGGTACCCATAGGGAGGACGCATGGGAATCATaGCAGGCGGAGGTGGCGGAGTCTTGGCAGGAGAGAGGTGGGTAT | + |
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Preference number: 5 (lower is better) Translates to: CQSLQGTHREDAWES*QAEVAESWQERGGY Trigger: ATACCCACCTCTCTCCTGCCAAGACTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTCCTCCCTATGGGTACCCTGGAGACTTTGACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | CTCCCTCGAGGCCTGCGAGTCAGTCTCAGAGTAAGGCGGAGGTGCTaGGGGATAGTGGCCCTCCTCTTCTTCTTCTTCTTCCTCCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: LPRGLRVSLRVRRRC*GIVALLFFFFFLPV Trigger: TACAGGGAGGAAGAAGAAGAAGAAGAGGAGGGCCACTATCCCCCAGCACCTCCGCCTTACTCTGAGACTGACTCGCAGGCCTCGAGGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | GGTGGGTATAGATGCTGGGGGCATAGATGCTTGGCACACCTGAGGTaGCTGCTTTGCCAGCAGCATAAAGGGCCTCAGGGCAACAGCACT | + |
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Preference number: 5 (lower is better) Translates to: GGYRCWGHRCLAHLR*LLCQQHKGPQGNST Trigger: AGTGCTGTTGCCCTGAGGCCCTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 90 bp | ACTTCTGAAGATACGCTCCCATCCACTTCACGCAGCAGGGGCACCTaGGAGCTGTGGCCACCAACTGAGCTGGTCCTGTCAAAGTCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: TSEDTLPSTSRSRGT*ELWPPTELVLSKSP Trigger: TGGAGACTTTGACAGGACCAGCTCAGTTGGTGGCCACAGCTCCCAGGTGCCCCTGCTGCGTGAAGTGGATGGGAGCGTATCTTCAGAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 90 bp | AATGAGCTCTGCGTACGCCTCGTTGTTCCCATCCAGATCTTGGGCTaGGACCACGGAGCAGTAATACACTCCACTGTCTCCCCAGGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: NELCVRLVVPIQILG*DHGAVIHSTVSPGR Trigger: ACGGCCTGGGGAGACAGTGGAGTGTATTACTGCTCCGTGGTCTCAGCCCAAGATCTGGATGGGAACAACGAGGCGTACGCAGAGCTCATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS TCA 90 bp | AGAGAGGTGGGTATAGATGCTGGGGGCATAGATGCTTGGCACACCTaGGGTGGCTGCTTTGCCAGCAGCATAAAGGGCCTCAGGGCAACA | + |
|
Preference number: 5 (lower is better) Translates to: REVGIDAGGIDAWHT*GGCFASSIKGLRAT Trigger: TGTTGCCCTGAGGCCCTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACCTCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 90 bp | AGAGAGGTGGGTATAGATGCTGGGGGCATAGATGCTTGGCACACCTaGGGTGGCTGCTTTGCCAGCAGCATAAACAAGGACAATGAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: REVGIDAGGIDAWHT*GGCFASSINKDNEL Trigger: GAGCTCATTGTCCTTGTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACCTCTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS CCA 90 bp | ATCCCTAGACCTCAAATCATCATAATAGTGGGGATCTCGGGAATGTaGCAAGTCTCTAGGATCGTCGGGGTCATAGAGGTCATCCCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: IPRPQIIIIVGISGM*QVSRIVGVIEVIPA Trigger: AGCCGGGATGACCTCTATGACCCCGACGATCCTAGAGACTTGCCACATTCCCGAGATCCCCACTATTATGATGATTTGAGGTCTAGGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGCCGCCAGCTGGGCGTaGAGCTGGTTGTCCACGCTG | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSAASWA*SWLSTL Trigger: CAGCGTGGACAACCAGCTCAACGCCCAGCTGGCGGC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCGTTCCACTCGGCCATaGGGAGGGCCAGGCCGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSRSTRP*GGPGRE Trigger: TTCCCGGCCTGGCCCTCCCAATGGCCGAGTGGAACG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTGGGCGTTGAGCTGGTaGTCCACGCTGGCAGGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSWALSW*STLAGE Trigger: CTCCCCTGCCAGCGTGGACAACCAGCTCAACGCCCA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCCCAGGGTCACAGCATaGCCCTGTTTGGTGGCCACC | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSPRVTA*PCLVAT Trigger: GGTGGCCACCAAACAGGGCAATGCTGTGACCCTGGG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCGGAGGTGGCGGAGTCTaGGCAGGAGAGAGGTGGGTA | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSGGGGV*AGERWV Trigger: TACCCACCTCTCTCCTGCCAAGACTCCGCCACCTCC...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCTGGGGGCATAGATGCTaGGCACACCTGAGGTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSWGHRC*AHLRWL Trigger: CAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCA...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCTCTCCGTCCACTACTaGGGGGAGAAGACCTTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSLSVHY*GEKTFL Trigger: CAGGAAGGTCTTCTCCCCCAAGTAGTGGACGGAGAG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS-3UTR CAA 90 bp | GATCTTGTGATCAGGAATTTTATTAGGCTTGGTGAAGAGTTTCATCAATATTCCCGGGAAGGATCGAAGTaGGCTAGCTCCTTCTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: DLVIRNFIRLGEEFHQYSREGSK*ASSFSI Trigger: TATGGAGAAGGAGCTAGCCAACTTCGATCCTTCCCG...GGAATATTGATGAAACTCTTCACCAAGCCTAATAAAATTCCTGATCACAAGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
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| CDS GCA 72 bp | GTCATAGAGGTCATCCCGGCTGCGACTTCTCGGAGGTaGATAGGCCCGCCCTCTCCGTCCACTACTTGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: VIEVIPAATSRR*IGPPSPSTTWG Trigger: CCCCCAAGTAGTGGACGGAGAGGGCGGGCCTATGCACCTCCGAGAAGTCGCAGCCGGGATGACCTCTATGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | CTCCAGGGTACCCATAGGGAGGACGCATGGGAATCATaGCAGGCGGAGGTGGCGGAGTCTTGGCAGGAGAGA | + |
|
Preference number: 6 (lower is better) Translates to: LQGTHREDAWES*QAEVAESWQER Trigger: TCTCTCCTGCCAAGACTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTCCTCCCTATGGGTACCCTGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CAA 90 bp | CTACTTGGGGGAGAAGACCTTCCTGATTCAGTGGAGCCAGGCCGGTaGATGTCATCTAGAGCATCCACAGAGCGGGCCCGAGGCCGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: LLGGEDLPDSVEPGR*MSSRASTERARGRP Trigger: TGGGCGGCCTCGGGCCCGCTCTGTGGATGCTCTAGATGACATCAACCGGCCTGGCTCCACTGAATCAGGAAGGTCTTCTCCCCCAAGTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 72 bp | GGGTCACAGCATTGCCCTGTTTGGTGGCCACCACCCTaGCAGTGCGTACGCTGTCCTGGCACTCCACATAGG | + |
|
Preference number: 6 (lower is better) Translates to: GSQHCPVWWPPP*QCVRCPGTPHR Trigger: CCTATGTGGAGTGCCAGGACAGCGTACGCACTGTCAGGGTGGTGGCCACCAAACAGGGCAATGCTGTGACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | GCCAGTCATCTTCATGGAGGGAGGTTACTTCACTCATaGCCCGTTCCACTCGGCCATTGGGAGGGCCAGGCC | + |
|
Preference number: 6 (lower is better) Translates to: ASHLHGGRLLHS*PVPLGHWEGQA Trigger: GGCCTGGCCCTCCCAATGGCCGAGTGGAACGGGCCATGAGTGAAGTAACCTCCCTCCATGAAGATGACTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | GGTTCCTGCTCCCATGTTCTGGGACTCCGAGGGGAGTaGCGATTCCACTCCTCATCCCTGATGGGTGTGAGG | + |
|
Preference number: 6 (lower is better) Translates to: GSCSHVLGLRGE*RFHSSSLMGVR Trigger: CCTCACACCCATCAGGGATGAGGAGTGGAATCGCCACTCCCCTCGGAGTCCCAGAACATGGGAGCAGGAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CAA 72 bp | GAGGTTACTTCACTCATGGCCCGTTCCACTCGGCCATaGGGAGGGCCAGGCCGGGAAGGATCGAAGTTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: EVTSLMARSTRP*GGPGREGSKLA Trigger: AGCCAACTTCGATCCTTCCCGGCCTGGCCCTCCCAATGGCCGAGTGGAACGGGCCATGAGTGAAGTAACCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 72 bp | CTAAGAGTCGCCCATCATACTGAGGGTCCCGTGACCTaGAGCCAGCATCCCGAGGATCGTGGGATCGCTGAC | + |
|
Preference number: 6 (lower is better) Translates to: LRVAHHTEGPVT*SQHPEDRGIAD Trigger: GTCAGCGATCCCACGATCCTCGGGATGCTGGCTTCAGGTCACGGGACCCTCAGTATGATGGGCGACTCTTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS GCA 72 bp | GTGGCGGAGTCTTGGCAGGAGAGAGGTGGGTATAGATaGTGGGGGCATAGATGCTTGGCACACCTGAGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: VAESWQERGGYR*WGHRCLAHLRW Trigger: CCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACCTCTCTCCTGCCAAGACTCCGCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS GCA 72 bp | CGAGGCCTGCGAGTCAGTCTCAGAGTAAGGCGGAGGTaGTGGGGGATAGTGGCCCTCCTCTTCTTCTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: RGLRVSLRVRRR*WGIVALLFFFF Trigger: GAAGAAGAAGAAGAGGAGGGCCACTATCCCCCAGCACCTCCGCCTTACTCTGAGACTGACTCGCAGGCCTCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | AGATGCTGGGGGCATAGATGCTTGGCACACCTGAGGTaGCTGCTTTGCCAGCAGCATAAAGGGCCTCAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: RCWGHRCLAHLR*LLCQQHKGPQG Trigger: GCCCTGAGGCCCTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | GCGGAGTCTTGGCAGGAGAGAGGTGGGTATAGATGCTaGGGGCATAGATGCTTGGCACACCTGAGGTGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: AESWQERGGYRC*GHRCLAHLRWL Trigger: CAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACCCACCTCTCTCCTGCCAAGACTCCGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | TGTCAAAGTCTCCAGGGTACCCATAGGGAGGACGCATaGGAATCATGGCAGGCGGAGGTGGCGGAGTCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: CQSLQGTHREDA*ESWQAEVAESW Trigger: CCAAGACTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTCCTCCCTATGGGTACCCTGGAGACTTTGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | AGGTTACTTCACTCATGGCCCGTTCCACTCGGCCATTaGGAGGGCCAGGCCGGGAAGGATCGAAGTTGGCTA | + |
|
Preference number: 6 (lower is better) Translates to: RLLHSWPVPLGH*EGQAGKDRSWL Trigger: TAGCCAACTTCGATCCTTCCCGGCCTGGCCCTCCCAATGGCCGAGTGGAACGGGCCATGAGTGAAGTAACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 72 bp | GAGAAGACCTTCCTGATTCAGTGGAGCCAGGCCGGTTaGTGTCATCTAGAGCATCCACAGAGCGGGCCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: EKTFLIQWSQAG*CHLEHPQSGPE Trigger: CTCGGGCCCGCTCTGTGGATGCTCTAGATGACATCAACCGGCCTGGCTCCACTGAATCAGGAAGGTCTTCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | ATAGGGAGGACGCATGGGAATCATGGCAGGCGGAGGTaGCGGAGTCTTGGCAGGAGAGAGGTGGGTATAGAT | + |
|
Preference number: 6 (lower is better) Translates to: IGRTHGNHGRRR*RSLGRREVGID Trigger: ATCTATACCCACCTCTCTCCTGCCAAGACTCCGCCACCTCCGCCTGCCATGATTCCCATGCGTCCTCCCTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | GGAGCCCTGGAAGGCCGAGATCGCCAGTCATCTTCATaGAGGGAGGTTACTTCACTCATGGCCCGTTCCACT | + |
|
Preference number: 6 (lower is better) Translates to: GALEGRDRQSSS*REVTSLMARST Trigger: AGTGGAACGGGCCATGAGTGAAGTAACCTCCCTCCATGAAGATGACTGGCGATCTCGGCCTTCCAGGGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | GGCCTGCGAGTCAGTCTCAGAGTAAGGCGGAGGTGCTaGGGGATAGTGGCCCTCCTCTTCTTCTTCTTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: GLRVSLRVRRRC*GIVALLFFFFF Trigger: GAAGAAGAAGAAGAAGAGGAGGGCCACTATCCCCCAGCACCTCCGCCTTACTCTGAGACTGACTCGCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS CAA 72 bp | GTCCTGCCAAGGACAATGAGCTCTGCGTACGCCTCGTaGTTCCCATCCAGATCTTGGGCTGAGACCACGGAG | + |
|
Preference number: 6 (lower is better) Translates to: VLPRTMSSAYAS*FPSRSWAETTE Trigger: CTCCGTGGTCTCAGCCCAAGATCTGGATGGGAACAACGAGGCGTACGCAGAGCTCATTGTCCTTGGCAGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001279.15 ENSMUST00000205961.2 |
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| CDS CAA 72 bp | GGAGAAGACCTTCCTGATTCAGTGGAGCCAGGCCGGTaGATGTCATCTAGAGCATCCACAGAGCGGGCCCGA | + |
|
Preference number: 6 (lower is better) Translates to: GEDLPDSVEPGR*MSSRASTERAR Trigger: TCGGGCCCGCTCTGTGGATGCTCTAGATGACATCAACCGGCCTGGCTCCACTGAATCAGGAAGGTCTTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 72 bp | GGTATAGATGCTGGGGGCATAGATGCTTGGCACACCTaGGGTGGCTGCTTTGCCAGCAGCATAAAGGGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: GIDAGGIDAWHT*GGCFASSIKGL Trigger: GAGGCCCTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | TTGGCTGTTCTTGAAGGGGTTCCTGCTCCCATGTTCTaGGACTCCGAGGGGAGTGGCGATTCCACTCCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LAVLEGVPAPMF*DSEGSGDSTPH Trigger: ATGAGGAGTGGAATCGCCACTCCCCTCGGAGTCCCAGAACATGGGAGCAGGAACCCCTTCAAGAACAGCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS TCA 72 bp | CTGGTTAGCCTGGATCCTGTAGCCACTTCGTACTTCTaGAGATACGCTCCCATCCACTTCACGCAGCAGGGG | + |
|
Preference number: 6 (lower is better) Translates to: LVSLDPVATSYF*RYAPIHFTQQG Trigger: CCCCTGCTGCGTGAAGTGGATGGGAGCGTATCTTCAGAAGTACGAAGTGGCTACAGGATCCAGGCTAACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000147431.2 ENSMUST00000205961.2 |
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| CDS CAA 72 bp | AGCCAATCAAGGACAATGAGCTCTGCGTACGCCTCGTaGTTCCCATCCAGATCTTGGGCTGAGACCACGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SQSRTMSSAYAS*FPSRSWAETTE Trigger: CTCCGTGGTCTCAGCCCAAGATCTGGATGGGAACAACGAGGCGTACGCAGAGCTCATTGTCCTTGATTGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108116.10 |
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| CDS TCA 72 bp | GGTATAGATGCTGGGGGCATAGATGCTTGGCACACCTaGGGTGGCTGCTTTGCCAGCAGCATAAACAAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: GIDAGGIDAWHT*GGCFASSINKD Trigger: GTCCTTGTTTATGCTGCTGGCAAAGCAGCCACCTCAGGTGTGCCAAGCATCTATGCCCCCAGCATCTATACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098553.11 |
||
| CDS TCA 72 bp | TTCTTTAAAGCCTCTTCTAAGAGTCGCCCATCATACTaGGGGTCCCGTGACCTGAAGCCAGCATCCCGAGGA | + |
|
Preference number: 6 (lower is better) Translates to: FFKASSKSRPSY*GSRDLKPASRG Trigger: TCCTCGGGATGCTGGCTTCAGGTCACGGGACCCTCAGTATGATGGGCGACTCTTAGAAGAGGCTTTAAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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| CDS CCA 72 bp | CCTCAAATCATCATAATAGTGGGGATCTCGGGAATGTaGCAAGTCTCTAGGATCGTCGGGGTCATAGAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PQIIIIVGISGM*QVSRIVGVIEV Trigger: GACCTCTATGACCCCGACGATCCTAGAGACTTGCCACATTCCCGAGATCCCCACTATTATGATGATTTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000001279.15 ENSMUST00000098553.11 ENSMUST00000108116.10 ENSMUST00000205961.2 |
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