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Pregenerated sensors for LSMEM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000103409

Ensembl transcript IDs: ENSMUST00000238519.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCGACCGGGGCTGCTTCCCTTGGGGGTCTGGCACCTGGCCTCCATaGCATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGCTGG +
Preference number: 1 (lower is better)
Translates to: PDRGCFPWGSGTWPP*HRVGKAAYNGCVCW
Trigger: CCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCAAGGGAAGCAGCCCCGGTCGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CCA 90 bp GGCTATCCAAAGCAGGGCCCTGGCACCAGAAGGCTTGGTCAGGCCTaGCCTGAAGAGGTCAAGAGAGACAGGAAGCTGTGGAGTTCTATC +
Preference number: 1 (lower is better)
Translates to: GYPKQGPGTRRLGQA*PEEVKRDRKLWSSI
Trigger: GATAGAACTCCACAGCTTCCTGTCTCTCTTGACCTCTTCAGGCCAGGCCTGACCAAGCCTTCTGGTGCCAGGGCCCTGCTTTGGATAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR-3UTR CCA 90 bp GGTGGCCAGAGGGTGCTGACAGGAGGTGCCAGGAAAAGACTGGTGCCCCATCCTTCCAAAGCAGGGCCCTaGCACCAGAAGGCTTGGTCA +
Preference number: 2 (lower is better)
Translates to: GGQRVLTGGARKRLVPHPSKAGP*HQKAWS
Trigger: TGACCAAGCCTTCTGGTGCCAGGGCCCTGCTTTGGA...AGGATGGGGCACCAGTCTTTTCCTGGCACCTCCTGTCAGCACCCTCTGGCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR-3UTR TCA 90 bp GATCTCTACCTCACCTTTGTCCTCCATGGCAGGACACTTAGTTCCCCAGGTCAGGGCAGAGTGGGTGGCTaGGCCAGGGCAGCTATTTCT +
Preference number: 2 (lower is better)
Translates to: DLYLTFVLHGRTLSSPGQGRVGG*ARAAIS
Trigger: AGAAATAGCTGCCCTGGCTCAGCCACCCACTCTGCC...CTGACCTGGGGAACTAAGTGTCCTGCCATGGAGGACAAAGGTGAGGTAGAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR-3UTR TCA 90 bp CAGGCTTGTCTGCAGCTAAGATCTCTACCTCACCTTTGTCCTCCATGGCAGGACTGGTCAGGCCTGGCCTaGAGAGGTCAAGAGAGACAG +
Preference number: 2 (lower is better)
Translates to: QACLQLRSLPHLCPPWQDWSGLA*RGQERQ
Trigger: CTGTCTCTCTTGACCTCTTCAGGCCAGGCCTGACCA...GTCCTGCCATGGAGGACAAAGGTGAGGTAGAGATCTTAGCTGCAGACAAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR-3UTR CCA 90 bp TCAGGACACTTAGACTCAAGCCCTTTGTATGTGCACTCAGCTCTGTGGCTGTGGTGGGGGTCTGGCACCTaGCCTCCATGGCATAGGGTA +
Preference number: 2 (lower is better)
Translates to: SGHLDSSPLYVHSALWLWWGSGT*PPWHRV
Trigger: TACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCA...CCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGTCCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR-3UTR CCA 90 bp AGGTGCCAGGAAAAGACTGGTGCCCCATCCTCTGACCTTTGGCTATCCAAAGCAAGAGACAGGAAGCTGTaGAGTTCTATCAGGCTTGTA +
Preference number: 2 (lower is better)
Translates to: RCQEKTGAPSSDLWLSKARDRKL*SSIRLV
Trigger: TACAAGCCTGATAGAACTCCACAGCTTCCTGTCTCT...TGCTTTGGATAGCCAAAGGTCAGAGGATGGGGCACCAGTCTTTTCCTGGCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CCA 72 bp CCCGACCGGGGCTGCTTCCCTTGGGGGTCTGGCACCTaGCCTCCATGGCATAGGGTAGGCAAAGCTGCCTAT +
Preference number: 3 (lower is better)
Translates to: PDRGCFPWGSGT*PPWHRVGKAAY
Trigger: ATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCAAGGGAAGCAGCCCCGGTCGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR-3UTR CAA 90 bp AGGACTAACCTAGGACCAACGGGCAGGGTGGGTGGTGAGAAAGGACCATCCCTGCTGGCACCAGAAGGCTaGGTCAGGCCTGGCCTGAAG +
Preference number: 3 (lower is better)
Translates to: RTNLGPTGRVGGEKGPSLLAPEG*VRPGLK
Trigger: CTTCAGGCCAGGCCTGACCAAGCCTTCTGGTGCCAG...CAGGGATGGTCCTTTCTCACCACCCACCCTGCCCGTTGGTCCTAGGTTAGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR TCA 72 bp CAGGAGGTGCCAGGAAAAGACTGGTGCCCCATCCTCTaGCCTTTGGCTATCCAAAGCAGGGCCCTGGCACCA +
Preference number: 3 (lower is better)
Translates to: QEVPGKDWCPIL*PLAIQSRALAP
Trigger: TGGTGCCAGGGCCCTGCTTTGGATAGCCAAAGGTCAGAGGATGGGGCACCAGTCTTTTCCTGGCACCTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CCA 72 bp TGCCAGGAAAAGACTGGTGCCCCATCCTCTGACCTTTaGCTATCCAAAGCAGGGCCCTGGCACCAGAAGGCT +
Preference number: 3 (lower is better)
Translates to: CQEKTGAPSSDL*LSKAGPWHQKA
Trigger: AGCCTTCTGGTGCCAGGGCCCTGCTTTGGATAGCCAAAGGTCAGAGGATGGGGCACCAGTCTTTTCCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CCA 72 bp GGCTGCTTCCCTTGGGGGTCTGGCACCTGGCCTCCATaGCATAGGGTAGGCAAAGCTGCCTATAATGGATGT +
Preference number: 3 (lower is better)
Translates to: GCFPWGSGTWPP*HRVGKAAYNGC
Trigger: ACATCCATTATAGGCAGCTTTGCCTACCCTATGCCATGGAGGCCAGGTGCCAGACCCCCAAGGGAAGCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR GCA 72 bp CATAGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTaGTGGTTTATTAAAGATAAGAGAGAATTAAACGAT +
Preference number: 3 (lower is better)
Translates to: HRVGKAAYNGCV*WFIKDKRELND
Trigger: ATCGTTTAATTCTCTCTTATCTTTAATAAACCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCTATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CCA 72 bp AGGGTAGGCAAAGCTGCCTATAATGGATGTGTGTGCTaGTTTATTAAAGATAAGAGAGAATTAAACGATACT +
Preference number: 3 (lower is better)
Translates to: RVGKAAYNGCVC*FIKDKRELNDT
Trigger: AGTATCGTTTAATTCTCTCTTATCTTTAATAAACCAGCACACACATCCATTATAGGCAGCTTTGCCTACCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR GCA 90 bp AGGCTTGGTCAGGCCTGGCCTGAAGAGGTCAAGAGAGACAGGAAGCTGTGGAGTCTCCTCCCATGCCTGTaGCTCCTCCACCAGACAGGG +
Preference number: 4 (lower is better)
Translates to: RLGQAWPEEVKRDRKLWSLLPCL*LLHQTG
Trigger: CCCTGTCTGGTGGAGGAGGCACAGGCATGGGAGGAG...ACTCCACAGCTTCCTGTCTCTCTTGACCTCTTCAGGCCAGGCCTGACCAAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR TCA 90 bp AGGGTGCTGACAGGAGGTGCCAGGAAAAGACTGGTGCCCCATCCTCTGACCTTTCGCTGTGTAGGTCACTaGTGGACTCCACTCGGTGCA +
Preference number: 4 (lower is better)
Translates to: RVLTGGARKRLVPHPLTFRCVGH*WTPLGA
Trigger: TGCACCGAGTGGAGTCCATCAGTGACCTACACAGCG...AAAGGTCAGAGGATGGGGCACCAGTCTTTTCCTGGCACCTCCTGTCAGCACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR CCA 90 bp AGGGTGCTGACAGGAGGTGCCAGGAAAAGACTGGTGCCCCATCCTCTGACCTTTGCTCCCCTGTTCCTCTaGTTCTGCATTGGCAACACG +
Preference number: 4 (lower is better)
Translates to: RVLTGGARKRLVPHPLTFAPLFL*FCIGNT
Trigger: CGTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGC...AAAGGTCAGAGGATGGGGCACCAGTCTTTTCCTGGCACCTCCTGTCAGCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR GCA 90 bp AGGCTTGGTCAGGCCTGGCCTGAAGAGGTCAAGAGAGACAGGAAGCTGTGGAGTTGCAACCAGCTTGGGTaGACAGCGATGGTGGTAAGA +
Preference number: 4 (lower is better)
Translates to: RLGQAWPEEVKRDRKLWSCNQLG*TAMVVR
Trigger: TCTTACCACCATCGCTGTGCACCCAAGCTGGTTGCA...ACTCCACAGCTTCCTGTCTCTCTTGACCTCTTCAGGCCAGGCCTGACCAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CAA 72 bp CCAGGCTTGTCTGCAGCTAAGATCTCTACCTCACCTTaGTCCTCCATGGCAGGACACTTAGTTCCCCAGGTC +
Preference number: 4 (lower is better)
Translates to: PGLSAAKISTSP*SSMAGHLVPQV
Trigger: GACCTGGGGAACTAAGTGTCCTGCCATGGAGGACAAAGGTGAGGTAGAGATCTTAGCTGCAGACAAGCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
3UTR CAA 72 bp AGGGTCAAGGGATCAGGACACTTAGACTCAAGCCCTTaGTATGTGCACTCAGCTCTGTGGCTGTGGCCTCTT +
Preference number: 4 (lower is better)
Translates to: RVKGSGHLDSSP*YVHSALWLWPL
Trigger: AAGAGGCCACAGCCACAGAGCTGAGTGCACATACAAAGGGCTTGAGTCTAAGTGTCCTGATCCCTTGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR TCA 90 bp AAGAGAGACAGGAAGCTGTGGAGTTCTATCAGGCTTGTACAGAAATCTCACCAACCAGCGCCAGGCAGGTaGACACCAGCAGTACCAGCA +
Preference number: 4 (lower is better)
Translates to: KRDRKLWSSIRLVQKSHQPAPGR*TPAVPA
Trigger: TGCTGGTACTGCTGGTGTTCACCTGCCTGGCGCTGG...TTGGTGAGATTTCTGTACAAGCCTGATAGAACTCCACAGCTTCCTGTCTCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 90 bp CGTAGTGAGCCTCCGCTGTGTAGGTCACTGATGGACTCCACTCGGTaGAGACGCACCTCCTGCACGTGGTTAGGAGCCAGTGCTCCCCTG +
Preference number: 5 (lower is better)
Translates to: RSEPPLCRSLMDSTR*RRTSCTWLGASAPL
Trigger: CAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCATCAGTGACCTACACAGCGGAGGCTCACTACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR CAA 90 bp CTGACCTTTGGCTATCCAAAGCAGGGCCCTGGCACCAGAAGGCTTGGTCAGGCCAGGGCTGCAACCAGCTaGGGTGCACAGCGATGGTGG +
Preference number: 5 (lower is better)
Translates to: LTFGYPKQGPGTRRLGQARAATS*GAQRWW
Trigger: CCACCATCGCTGTGCACCCAAGCTGGTTGCAGCCCT...GGCCTGACCAAGCCTTCTGGTGCCAGGGCCCTGCTTTGGATAGCCAAAGGTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 90 bp GCAGTACCAGCAGCAGAAGGAAGCCCCCACGGCCACACACAGGGCTaGAACCAGCTTGGGTGCACAGCGATGGTGGTAAGACACCCAGAA +
Preference number: 5 (lower is better)
Translates to: AVPAAEGSPHGHTQG*NQLGCTAMVVRHPE
Trigger: TTCTGGGTGTCTTACCACCATCGCTGTGCACCCAAGCTGGTTGCAGCCCTGTGTGTGGCCGTGGGGGCTTCCTTCTGCTGCTGGTACTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 90 bp CTCCACTCGGTGCAGACGCACCTCCTGCACGTGGTTAGGAGCCAGTaGTCCCCTGTTCCTCTGGTTCTGCATTGGCAACACGGTGTCTTC +
Preference number: 5 (lower is better)
Translates to: LHSVQTHLLHVVRSQ*SPVPLVLHWQHGVF
Trigger: GAAGACACCGTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 90 bp CTGTGTAGGTCACTGATGGACTCCACTCGGTGCAGACGCACCTCCTaGACGTGGTTAGGAGCCAGTGCTCCCCTGTTCCTCTGGTTCTGC +
Preference number: 5 (lower is better)
Translates to: LCRSLMDSTRCRRTS*TWLGASAPLFLWFC
Trigger: GCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCATCAGTGACCTACACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS CCA 90 bp CGCACCTCCTGCACGTGGTTAGGAGCCAGTGCTCCCCTGTTCCTCTaGTTCTGCATTGGCAACACGGTGTCTTCTAGGGTCTCCTCAGGC +
Preference number: 5 (lower is better)
Translates to: RTSCTWLGASAPLFL*FCIGNTVSSRVSSG
Trigger: GCCTGAGGAGACCCTAGAAGACACCGTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS CCA 90 bp AGGTCACTGATGGACTCCACTCGGTGCAGACGCACCTCCTGCACGTaGTTAGGAGCCAGTGCTCCCCTGTTCCTCTGGTTCTGCATTGGC +
Preference number: 5 (lower is better)
Translates to: RSLMDSTRCRRTSCT*LGASAPLFLWFCIG
Trigger: GCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCATCAGTGACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR CAA 90 bp AGGCTTGGTCAGGCCTGGCCTGAAGAGGTCAAGAGAGACAGGAAGCTGTGGAGTCGAGCCTCACTGGAGTaGAGCCTTCTTAGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: RLGQAWPEEVKRDRKLWSRASLE*SLLSWL
Trigger: CAGCCAGCTAAGAAGGCTCAACTCCAGTGAGGCTCG...ACTCCACAGCTTCCTGTCTCTCTTGACCTCTTCAGGCCAGGCCTGACCAAGCCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR CAA 90 bp GGCACCAGAAGGCTTGGTCAGGCCTGGCCTGAAGAGGTCAAGAGAGACAGGAAGCTAGCCAGACGCAATTaGAGCAGAGTCTCCTCTTGT +
Preference number: 5 (lower is better)
Translates to: GTRRLGQAWPEEVKRDRKLARRN*SRVSSC
Trigger: ACAAGAGGAGACTCTGCTCAAATTGCGTCTGGCTAG...CTTCCTGTCTCTCTTGACCTCTTCAGGCCAGGCCTGACCAAGCCTTCTGGTGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS-3UTR CAA 90 bp TGGCCTGAAGAGGTCAAGAGAGACAGGAAGCTGTGGAGTTCTATCAGGCTTGTATCCTCTGGTTCTGCATaGGCAACACGGTGTCTTCTA +
Preference number: 5 (lower is better)
Translates to: WPEEVKRDRKLWSSIRLVSSGSA*ATRCLL
Trigger: TAGAAGACACCGTGTTGCCAATGCAGAACCAGAGGA...TACAAGCCTGATAGAACTCCACAGCTTCCTGTCTCTCTTGACCTCTTCAGGCCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 72 bp TCACTGATGGACTCCACTCGGTGCAGACGCACCTCCTaGACGTGGTTAGGAGCCAGTGCTCCCCTGTTCCTC +
Preference number: 6 (lower is better)
Translates to: SLMDSTRCRRTS*TWLGASAPLFL
Trigger: GAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCATCAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 72 bp CCTCCGCTGTGTAGGTCACTGATGGACTCCACTCGGTaGAGACGCACCTCCTGCACGTGGTTAGGAGCCAGT +
Preference number: 6 (lower is better)
Translates to: PPLCRSLMDSTR*RRTSCTWLGAS
Trigger: ACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCATCAGTGACCTACACAGCGGAGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS CCA 72 bp ATGGACTCCACTCGGTGCAGACGCACCTCCTGCACGTaGTTAGGAGCCAGTGCTCCCCTGTTCCTCTGGTTC +
Preference number: 6 (lower is better)
Translates to: MDSTRCRRTSCT*LGASAPLFLWF
Trigger: GAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCACCGAGTGGAGTCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 72 bp GTGCAGACGCACCTCCTGCACGTGGTTAGGAGCCAGTaGTCCCCTGTTCCTCTGGTTCTGCATTGGCAACAC +
Preference number: 6 (lower is better)
Translates to: VQTHLLHVVRSQ*SPVPLVLHWQH
Trigger: GTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCAGGAGGTGCGTCTGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS CCA 72 bp GGTGCCCGAGCCTCACTGGAGTTGAGCCTTCTTAGCTaGCTGAGGCTAGCCAGACGCAATTTGAGCAGAGTC +
Preference number: 6 (lower is better)
Translates to: GARASLELSLLS*LRLARRNLSRV
Trigger: GACTCTGCTCAAATTGCGTCTGGCTAGCCTCAGCCAGCTAAGAAGGCTCAACTCCAGTGAGGCTCGGGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS CCA 72 bp TGCACGTGGTTAGGAGCCAGTGCTCCCCTGTTCCTCTaGTTCTGCATTGGCAACACGGTGTCTTCTAGGGTC +
Preference number: 6 (lower is better)
Translates to: CTWLGASAPLFL*FCIGNTVSSRV
Trigger: GACCCTAGAAGACACCGTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCACGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS GCA 72 bp TGGTTAGGAGCCAGTGCTCCCCTGTTCCTCTGGTTCTaGATTGGCAACACGGTGTCTTCTAGGGTCTCCTCA +
Preference number: 6 (lower is better)
Translates to: WLGASAPLFLWF*IGNTVSSRVSS
Trigger: TGAGGAGACCCTAGAAGACACCGTGTTGCCAATGCAGAACCAGAGGAACAGGGGAGCACTGGCTCCTAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2
CDS TCA 72 bp AATTTGAGCAGAGTCTCCTCTTGTGTGCGCAGTGTGTaGGCCAACACCCTCAGGGATTCGCTCTGCAGCACA +
Preference number: 6 (lower is better)
Translates to: NLSRVSSCVRSV*ANTLRDSLCST
Trigger: TGTGCTGCAGAGCGAATCCCTGAGGGTGTTGGCTCACACACTGCGCACACAAGAGGAGACTCTGCTCAAATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238519.2