Pregenerated sensors for LSMEM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071342Ensembl transcript IDs: ENSMUST00000095760.3, ENSMUST00000220951.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATaGTCCCCATGTTTTCTCCAGCGATCACCGAAGGAAGAGCGCTCA | + |
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Preference number: 1 (lower is better) Translates to: YSRLVLSLSFTTRTS*SPCFLQRSPKEERS Trigger: TGAGCGCTCTTCCTTCGGTGATCGCTGGAGAAAACATGGGGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR CAA 90 bp | AAAGCAGGGGCTCAGGAAACAGTAGTAGAATACAGCAGGCTTGTCTaGTCCCTCAGCTTCACCACACGTACATCATGCTCCCCATGTTTT | + |
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Preference number: 2 (lower is better) Translates to: KAGAQETVVEYSRLV*SLSFTTRTSCSPCF Trigger: AAAACATGGGGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTCTACTACTGTTTCCTGAGCCCCTGCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR-3UTR GCA 90 bp | GAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATGCTCCGATTCCTTAAGCTTGTaGCGGAATCTGTACAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: EYSRLVLSLSFTTRTSCSDSLSL*RNLYRY Trigger: GTACCTGTACAGATTCCGGCACAAGCTTAAGGAATC...GGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR-3UTR CCA 90 bp | AATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGGCATTATTGTACTTCCAGCAAGTaGGAAGCTCCAGCACCCACG | + |
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Preference number: 2 (lower is better) Translates to: NQVHPFQLPSLNSLPGHYCTSSK*EAPAPT Trigger: CGTGGGTGCTGGAGCTTCCCACTTGCTGGAAGTACA...ATAATGCCCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR-3UTR CCA 90 bp | GAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATGCTCCTTTAAACTCCTTGCCTaGGCATTATCTCCATCCTTG | + |
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Preference number: 2 (lower is better) Translates to: EYSRLVLSLSFTTRTSCSFKLLA*ALSPSL Trigger: CAAGGATGGAGATAATGCCCAGGCAAGGAGTTTAAA...GGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR CAA 90 bp | CATGTTTTCTCCAGCGATCACCGAAGGAAGAGCGCTCAGAAGCTGTaGTCAAAGTGTGTCACCCAAAAAGAAGAATGTACGCTACTGAAA | + |
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Preference number: 2 (lower is better) Translates to: HVFSSDHRRKSAQKL*SKCVTQKEECTLLK Trigger: TTTCAGTAGCGTACATTCTTCTTTTTGGGTGACACACTTTGACAACAGCTTCTGAGCGCTCTTCCTTCGGTGATCGCTGGAGAAAACATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR-3UTR GCA 90 bp | AAAACTCGTCTTGCAAGCATGAAGACTCCTGAGTTTGATCCCAGAACCCACTTTACCACACGTACATCATaGTCCCCATGTTTTCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: KTRLASMKTPEFDPRTHFTTRTS*SPCFLQ Trigger: CTGGAGAAAACATGGGGAGCATGATGTACGTGTGGT...AAAGTGGGTTCTGGGATCAAACTCAGGAGTCTTCATGCTTGCAAGACGAGTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR-3UTR TCA 90 bp | GAAACAGTAGTAGAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTCATTATCTCCATCCTTaGACCAAGAGGTATAATGGA | + |
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Preference number: 2 (lower is better) Translates to: ETVVEYSRLVLSLSFTTRHYLHP*TKRYNG Trigger: TCCATTATACCTCTTGGTTCAAGGATGGAGATAATG...ACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTCTACTACTGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR-3UTR GCA 90 bp | GGCTGCAGAGAGGACTCAGTCAGCAAAACTCGTCTTGCAAGCATGAAGACTCCTCTGAGCATAAAAACATaGACAGTGTACATAAGACAA | + |
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Preference number: 2 (lower is better) Translates to: GCREDSVSKTRLASMKTPLSIKT*TVYIRQ Trigger: TTGTCTTATGTACACTGTGCATGTTTTTATGCTCAG...AGGAGTCTTCATGCTTGCAAGACGAGTTTTGCTGACTGAGTCCTCTCTGCAGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR-3UTR CCA 90 bp | CACACCTATTTTGCCTCAATCTTGCCATATACAGCATACTTTATTCTTGCTAAATGTACTTCCAGCAAGTaGGAAGCTCCAGCACCCACG | + |
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Preference number: 2 (lower is better) Translates to: HTYFASILPYTAYFILAKCTSSK*EAPAPT Trigger: CGTGGGTGCTGGAGCTTCCCACTTGCTGGAAGTACA...TTTAGCAAGAATAAAGTATGCTGTATATGGCAAGATTGAGGCAAAATAGGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR-3UTR GCA 90 bp | TTTGCCTCAATCTTGCCATATACAGCATACTTTATTCTTGCTAAAACAAGGAGGGATTCCTTAAGCTTGTaGCGGAATCTGTACAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: FASILPYTAYFILAKTRRDSLSL*RNLYRY Trigger: GTACCTGTACAGATTCCGGCACAAGCTTAAGGAATC...CCTCCTTGTTTTAGCAAGAATAAAGTATGCTGTATATGGCAAGATTGAGGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR-3UTR TCA 90 bp | CACACCTATTTTGCCTCAATCTTGCCATATACAGCATACTTTATTCTTGCTAAACATTATCTCCATCCTTaGACCAAGAGGTATAATGGA | + |
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Preference number: 2 (lower is better) Translates to: HTYFASILPYTAYFILAKHYLHP*TKRYNG Trigger: TCCATTATACCTCTTGGTTCAAGGATGGAGATAATG...TTTAGCAAGAATAAAGTATGCTGTATATGGCAAGATTGAGGCAAAATAGGTGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATGCTCCCCATAGCGCTCAGAAGCTGTaGTCAAAGTGTGTCACCCAA | + |
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Preference number: 3 (lower is better) Translates to: TAGLSCPSASPHVHHAPHSAQKL*SKCVTQ Trigger: TTGGGTGACACACTTTGACAACAGCTTCTGAGCGCT...ATGGGGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR GCA 72 bp | CTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATaGTCCCCATGTTTTCTCCAGCGATCACCGAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: LVLSLSFTTRTS*SPCFLQRSPKE Trigger: TTCCTTCGGTGATCGCTGGAGAAAACATGGGGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR GCA 72 bp | CAACACAGAGACAGTTCGGTGGATTCCTTAAGCTTGTaGCGGAATCTGTACAGGTACGTGAGGCATCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: QHRDSSVDSLSL*RNLYRYVRHQR Trigger: TCTCTGATGCCTCACGTACCTGTACAGATTCCGGCACAAGCTTAAGGAATCCACCGAACTGTCTCTGTGTTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR-3UTR CAA 90 bp | GAAACAGTAGTAGAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTAGCGCTCAGAAGCTGTaGTCAAAGTGTGTCACCCAA | + |
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Preference number: 3 (lower is better) Translates to: ETVVEYSRLVLSLSFTTRSAQKL*SKCVTQ Trigger: TTGGGTGACACACTTTGACAACAGCTTCTGAGCGCT...ACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTCTACTACTGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| 3UTR TCA 72 bp | GAGAGGACTCAGTCAGCAAAACTCGTCTTGCAAGCATaGAGACTCCTGAGTTTGATCCCAGAACCCACTTTT | + |
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Preference number: 3 (lower is better) Translates to: ERTQSAKLVLQA*RLLSLIPEPTF Trigger: AAAAGTGGGTTCTGGGATCAAACTCAGGAGTCTTCATGCTTGCAAGACGAGTTTTGCTGACTGAGTCCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR TCA 72 bp | GTTGCACATGTGTATGGTAGGAACTCTAGAGTCAGATaGTTTTCACAAAGCAGGGGCTCAGGAAACAGTAGT | + |
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Preference number: 3 (lower is better) Translates to: VAHVYGRNSRVR*FSQSRGSGNSS Trigger: ACTACTGTTTCCTGAGCCCCTGCTTTGTGAAAATCATCTGACTCTAGAGTTCCTACCATACACATGTGCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR GCA 90 bp | CTACTGAAAAGCATGAGCACCCGGTTCCCCTCAACACAGAGACAGTTCGGTGGATTCCTTCTTCCTGGATaGCATGAGACCCAGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: LLKSMSTRFPSTQRQFGGFLLPG*HETQHP Trigger: AGGATGCTGGGTCTCATGGCATCCAGGAAGAAGGAA...TCCACCGAACTGTCTCTGTGTTGAGGGGAACCGGGTGCTCATGCTTTTCAGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CCA 90 bp | AATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGGCATTATCCGCCTTCCATTTCCTaGGGCTGTGCCAGCATTGGG | + |
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Preference number: 4 (lower is better) Translates to: NQVHPFQLPSLNSLPGHYPPSIS*GCASIG Trigger: CCCAATGCTGGCACAGCCCCAGGAAATGGAAGGCGG...ATAATGCCCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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| CDS-3UTR TCA 90 bp | GAAACAGTAGTAGAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTCAGAGTCCAGCTGGTTaGGCCGCTTTACAATCATGT | + |
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Preference number: 4 (lower is better) Translates to: ETVVEYSRLVLSLSFTTRQSPAG*AALQSC Trigger: ACATGATTGTAAAGCGGCTCAACCAGCTGGACTCTG...ACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTCTACTACTGTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CCA 90 bp | GAAACAGTAGTAGAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTGGGCTGTGCCAGCATTaGGGATTTTGTCCTCTAAAG | + |
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Preference number: 4 (lower is better) Translates to: ETVVEYSRLVLSLSFTTRGLCQH*GFCPLK Trigger: CTTTAGAGGACAAAATCCCCAATGCTGGCACAGCCC...ACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTCTACTACTGTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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| 3UTR CAA 72 bp | TCCAGCGATCACCGAAGGAAGAGCGCTCAGAAGCTGTaGTCAAAGTGTGTCACCCAAAAAGAAGAATGTACG | + |
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Preference number: 4 (lower is better) Translates to: SSDHRRKSAQKL*SKCVTQKEECT Trigger: CGTACATTCTTCTTTTTGGGTGACACACTTTGACAACAGCTTCTGAGCGCTCTTCCTTCGGTGATCGCTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR TCA 90 bp | AATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGGCATTATCAGAGTCCAGCTGGTTaGGCCGCTTTACAATCATGT | + |
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Preference number: 4 (lower is better) Translates to: NQVHPFQLPSLNSLPGHYQSPAG*AALQSC Trigger: ACATGATTGTAAAGCGGCTCAACCAGCTGGACTCTG...ATAATGCCCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CCA 90 bp | CTACTGAAAAGCATGAGCACCCGGTTCCCCTCAACACAGAGACAGTTCGGTGGATGTTTAAGTCATTTATaGAATCCACAACGTAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: LLKSMSTRFPSTQRQFGGCLSHL*NPQRRV Trigger: GACTCTACGTTGTGGATTCCATAAATGACTTAAACA...TCCACCGAACTGTCTCTGTGTTGAGGGGAACCGGGTGCTCATGCTTTTCAGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CCA 90 bp | GAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATGCTCCTGTTTAAGTCATTTATaGAATCCACAACGTAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: EYSRLVLSLSFTTRTSCSCLSHL*NPQRRV Trigger: GACTCTACGTTGTGGATTCCATAAATGACTTAAACA...GGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CCA 90 bp | GAAACAGTAGTAGAATACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTGAATTATTAGAAAGATaGCGAAGAAGACCAGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: ETVVEYSRLVLSLSFTTRELLER*RRRPEP Trigger: TGGCTCTGGTCTTCTTCGCCATCTTTCTAATAATTC...ACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGTATTCTACTACTGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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| 3UTR CAA 72 bp | CAGTCAATAAGGCTGAATCAAGTTCACCCCTTTCAGTaGCCATCTTTAAACTCCTTGCCTGGGCATTATCTC | + |
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Preference number: 4 (lower is better) Translates to: QSIRLNQVHPFQ*PSLNSLPGHYL Trigger: GAGATAATGCCCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATTCAGCCTTATTGACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR TCA 90 bp | AAAACTCGTCTTGCAAGCATGAAGACTCCTGAGTTTGATCCCAGAACCCACTTTCCATCGGGCAGAGACTaGGTTTGTTTAAGTCATTTA | + |
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Preference number: 4 (lower is better) Translates to: KTRLASMKTPEFDPRTHFPSGRD*VCLSHL Trigger: TAAATGACTTAAACAAACTCAGTCTCTGCCCGATGG...AAAGTGGGTTCTGGGATCAAACTCAGGAGTCTTCATGCTTGCAAGACGAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| CDS-3UTR TCA 90 bp | AATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGGCATTATCCATCGGGCAGAGACTaGGTTTGTTTAAGTCATTTA | + |
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Preference number: 4 (lower is better) Translates to: NQVHPFQLPSLNSLPGHYPSGRD*VCLSHL Trigger: TAAATGACTTAAACAAACTCAGTCTCTGCCCGATGG...ATAATGCCCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR TCA 90 bp | AAGGCTGAATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGATCTGGTTTCCTGTTTaGATTATTAGAAAGATGGCG | + |
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Preference number: 4 (lower is better) Translates to: KAESSSPLSVAIFKLLAWIWFPV*IIRKMA Trigger: CGCCATCTTTCTAATAATTCAAACAGGAAACCAGAT...CCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATTCAGCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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| 3UTR CAA 72 bp | TTGCCTCAATCTTGCCATATACAGCATACTTTATTCTaGCTAAAACAAGGAGGCTTCCAAATACACAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LPQSCHIQHTLF*LKQGGFQIHSF Trigger: AAAACTGTGTATTTGGAAGCCTCCTTGTTTTAGCAAGAATAAAGTATGCTGTATATGGCAAGATTGAGGCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| 3UTR CAA 72 bp | GGGAAAGCAGAAAGAAATGAGTGTTTACTTGGAGCTTaGGTATCAGATCTCCTGGTTTTTGAAATATTTTTC | + |
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Preference number: 4 (lower is better) Translates to: GKAERNECLLGA*VSDLLVFEIFF Trigger: GAAAAATATTTCAAAAACCAGGAGATCTGATACCAAAGCTCCAAGTAAACACTCATTTCTTTCTGCTTTCCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| CDS-3UTR CAA 90 bp | CTACTGAAAAGCATGAGCACCCGGTTCCCCTCAACACAGAGACAGTTCGGTGGATCAGAGTCCAGCTGGTaGAGCCGCTTTACAATCATG | + |
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Preference number: 5 (lower is better) Translates to: LLKSMSTRFPSTQRQFGGSESSW*SRFTIM Trigger: CATGATTGTAAAGCGGCTCAACCAGCTGGACTCTGA...TCCACCGAACTGTCTCTGTGTTGAGGGGAACCGGGTGCTCATGCTTTTCAGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CAA 90 bp | ACAGCAGGCTTGTCTTGTCCCTCAGCTTCACCACACGTACATCATGCTCCCCATGGGCAGAGACTGAGTTaGTTTAAGTCATTTATGGAA | + |
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Preference number: 5 (lower is better) Translates to: TAGLSCPSASPHVHHAPHGQRLS*FKSFME Trigger: TTCCATAAATGACTTAAACAAACTCAGTCTCTGCCC...ATGGGGAGCATGATGTACGTGTGGTGAAGCTGAGGGACAAGACAAGCCTGCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CAA 90 bp | AATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGGCATTATTCAGAGTCCAGCTGGTaGAGCCGCTTTACAATCATG | + |
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Preference number: 5 (lower is better) Translates to: NQVHPFQLPSLNSLPGHYSESSW*SRFTIM Trigger: CATGATTGTAAAGCGGCTCAACCAGCTGGACTCTGA...ATAATGCCCAGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS-3UTR CAA 90 bp | ATAAGGCTGAATCAAGTTCACCCCTTTCAGTTGCCATCTTTAAACTCCTTGCCTGGGCAGAGACTGAGTTaGTTTAAGTCATTTATGGAA | + |
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Preference number: 5 (lower is better) Translates to: IRLNQVHPFQLPSLNSLPGQRLS*FKSFME Trigger: TTCCATAAATGACTTAAACAAACTCAGTCTCTGCCC...AGGCAAGGAGTTTAAAGATGGCAACTGAAAGGGGTGAACTTGATTCAGCCTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS TCA 90 bp | TGTCCTCTAAAGAGAATAGATGTTGTGATTCCATCGGGCAGAGACTaGGTTTGTTTAAGTCATTTATGGAATCCACAACGTAGAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: CPLKRIDVVIPSGRD*VCLSHLWNPQRRVF Trigger: GAAGACTCTACGTTGTGGATTCCATAAATGACTTAAACAAACTCAGTCTCTGCCCGATGGAATCACAACATCTATTCTCTTTAGAGGACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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| CDS TCA 90 bp | TTCCTGTTTGAAAGAATAGATGTTGTGATTCCATCGGGCAGAGACTaGGTTTGTTTAAGTCATTTATGGAATCCACAACGTAGAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: FLFERIDVVIPSGRD*VCLSHLWNPQRRVF Trigger: GAAGACTCTACGTTGTGGATTCCATAAATGACTTAAACAAACTCAGTCTCTGCCCGATGGAATCACAACATCTATTCTTTCAAACAGGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220951.2 |
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| CDS GCA 72 bp | TGGAATCCACAACGTAGAGTCTTCCTTCTTCCTGGATaGCATGAGACCCAGCATCCTGAGAGGAATGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: WNPQRRVFLLPG*HETQHPERNES Trigger: TGACTCATTCCTCTCAGGATGCTGGGTCTCATGGCATCCAGGAAGAAGGAAGACTCTACGTTGTGGATTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095760.3 ENSMUST00000220951.2 |
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| CDS TCA 72 bp | AGCCTTCTTGACACGTCCTCCATCTGGTTTCCTGTTTaGATTATTAGAAAGATGGCGAAGAAGACCAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: SLLDTSSIWFPV*IIRKMAKKTRA Trigger: GGCTCTGGTCTTCTTCGCCATCTTTCTAATAATTCAAACAGGAAACCAGATGGAGGACGTGTCAAGAAGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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| CDS CAA 72 bp | CTTCCATTTCCTGGGGCTGTGCCAGCATTGGGGATTTaGTCCTCTAAAGAGAATAGATGTTGTGATTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LPFPGAVPALGI*SSKENRCCDSI Trigger: GATGGAATCACAACATCTATTCTCTTTAGAGGACAAAATCCCCAATGCTGGCACAGCCCCAGGAAATGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095760.3 |
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