Pregenerated sensors for LSM8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044155Ensembl transcript IDs: ENSMUST00000056398.11, ENSMUST00000201141.3
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTACACACTGAGGTCCTCCCTGTGAAGAGCTaGACACCCGCTCATGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: QDRRFCTGFTHISLHTEVLPVKS*TPAHGF Trigger: AAAGCCATGAGCGGGTGTTCAGCTCTTCACAGGGAG...GACCTCAGTGTGTAGTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056398.11 ENSMUST00000201141.3 |
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| CDS-3UTR GCA 90 bp | CTCAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTACACACTGAGGGGAGTTCAGAGGCTCTaGTCGGATGTTCCCCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: LRTDASVQDLHTSHYTLRGVQRL*SDVPQV Trigger: GACTTGGGGAACATCCGAGCAGAGCCTCTGAACTCC...CCTCAGTGTGTAGTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056398.11 ENSMUST00000201141.3 |
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| CDS-3UTR TCA 90 bp | CAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTACACACTGAGGTCTTGTTCTACTCCCTGTaGAGAGCTGAACACCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: QDRRFCTGFTHISLHTEVLFYSL*RAEHPL Trigger: GAGCGGGTGTTCAGCTCTTCACAGGGAGTAGAACAA...GACCTCAGTGTGTAGTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056398.11 ENSMUST00000201141.3 |
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| CDS-3UTR TCA 90 bp | CTAAACATCACTCTCAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTTGTTCTACTCCCTGTaGAGAGCTGAACACCCGCTC | + |
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Preference number: 4 (lower is better) Translates to: LNITLRTDASVQDLHTSHLFYSL*RAEHPL Trigger: GAGCGGGTGTTCAGCTCTTCACAGGGAGTAGAACAA...GTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTGAGAGTGATGTTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056398.11 |
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| CDS-3UTR GCA 90 bp | AAAACCCTAAACATCACTCTCAGGACAGACGCTTCTGTACAGGATTTACACACAGGAGTTCAGAGGCTCTaGTCGGATGTTCCCCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: KTLNITLRTDASVQDLHTGVQRL*SDVPQV Trigger: GACTTGGGGAACATCCGAGCAGAGCCTCTGAACTCC...TGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTGAGAGTGATGTTTAGGGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056398.11 |
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| CDS-3UTR TCA 90 bp | GAAGTCAAACTGCACAATTACACACTCATAAAAACCCTAAACATCACTCTCAGGCTCCCTGTGAAGAGCTaGACACCCGCTCATGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: EVKLHNYTLIKTLNITLRLPVKS*TPAHGF Trigger: AAAGCCATGAGCGGGTGTTCAGCTCTTCACAGGGAG...CCTGAGAGTGATGTTTAGGGTTTTTATGAGTGTGTAATTGTGCAGTTTGACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056398.11 |
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| CDS-3UTR TCA 90 bp | AAAAACCCTAAACATCACTCTCAGGACAGACGCTTCTGTACAGGATTTACACACCATCTATTTCCCCAATaGCTGCTACATTGTCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: KNPKHHSQDRRFCTGFTHHLFPQ*LLHCRP Trigger: GGGGCGACAATGTAGCAGTCATTGGGGAAATAGATG...GTGTGTAAATCCTGTACAGAAGCGTCTGTCCTGAGAGTGATGTTTAGGGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056398.11 |
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| CDS-3UTR GCA 90 bp | CAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTACACACTGAGGTCTATTTCATATCTCCTTaGTGCCAACACTGTGTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: QDRRFCTGFTHISLHTEVYFISP*CQHCVL Trigger: CAAGACACAGTGTTGGCAGCAAGGAGATATGAAATA...GACCTCAGTGTGTAGTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201141.3 |
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| CDS GCA 90 bp | TGCTACGGAGTTCAGAGGCTCTGCTCGGATGTTCCCCAAGTCGAGTaGAGAATCCGTCTCTTCATCTATTTCCCCAATGACTGCTACATT | + |
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Preference number: 5 (lower is better) Translates to: CYGVQRLCSDVPQVE*RIRLFIYFPNDCYI Trigger: AATGTAGCAGTCATTGGGGAAATAGATGAAGAGACGGATTCTGCACTCGACTTGGGGAACATCCGAGCAGAGCCTCTGAACTCCGTAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056398.11 ENSMUST00000201141.3 |
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| CDS-3UTR CAA 90 bp | CTCAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTACACACTGAGGTGCCAACACTGTGTCTaGTGTGTATGTCAAACTGAA | + |
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Preference number: 5 (lower is better) Translates to: LRTDASVQDLHTSHYTLRCQHCV*CVCQTE Trigger: TTCAGTTTGACATACACACAAGACACAGTGTTGGCA...CCTCAGTGTGTAGTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201141.3 |
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| CDS-3UTR CAA 90 bp | CTCAGGACAGACGCTTCTGTACAGGATTTACACACATCTCACTACACACTGAGGATATTTCATATCTCCTaGCTGCCAACACTGTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: LRTDASVQDLHTSHYTLRIFHIS*LPTLCL Trigger: AAGACACAGTGTTGGCAGCAAGGAGATATGAAATAT...CCTCAGTGTGTAGTGAGATGTGTGTAAATCCTGTACAGAAGCGTCTGTCCTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201141.3 |
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| CDS TCA 72 bp | ACCCCAACACCACTTGTTCTACTCCCTGTGAAGAGCTaGACACCCGCTCATGGCTTTCATCCAAAATCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TPTPLVLLPVKS*TPAHGFHPKSS Trigger: ACTTGATTTTGGATGAAAGCCATGAGCGGGTGTTCAGCTCTTCACAGGGAGTAGAACAAGTGGTGTTGGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056398.11 ENSMUST00000201141.3 |
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| CDS TCA 72 bp | CGAGTGCAGAATCCGTCTCTTCATCTATTTCCCCAATaGCTGCTACATTGTCGCCCCTCACAATGTATAACC | + |
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Preference number: 6 (lower is better) Translates to: RVQNPSLHLFPQ*LLHCRPSQCIT Trigger: GGTTATACATTGTGAGGGGCGACAATGTAGCAGTCATTGGGGAAATAGATGAAGAGACGGATTCTGCACTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056398.11 ENSMUST00000201141.3 |
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