Pregenerated sensors for LSM7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035215Ensembl transcript IDs: ENSMUST00000035775.9, ENSMUST00000220225.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGCTGCTGCACGAAGGGGTTGGGGATGGCCTCCATGCCGTCCTGTaGGCAGATGAGCACCACCGAGGTGCCACGACATACGACAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: LLLHEGVGDGLHAVL*ADEHHRGATTYDKP Trigger: GGGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAGGCCATCCCCAACCCCTTCGTGCAGCAGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR GCA 90 bp | CAGATGAGCACCACCGAGGTGCCACGACATACGACAAGCCCCAGCTaGCGAGTGTCCTCCGTCAGCTTGTACTGGTCATCAGGGTCTGGT | + |
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Preference number: 1 (lower is better) Translates to: QMSTTEVPRHTTSPS*RVSSVSLYWSSGSG Trigger: ACCAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 90 bp | AACGCTAGAGCCCATGCTGACCCCGTAAACACCAAGGGCATCTACTaGGCAGCAGATGCACTGGAGAGGGTGGGCAACAGGAGGAGCTGG | + |
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Preference number: 1 (lower is better) Translates to: NARAHADPVNTKGIY*AADALERVGNRRSW Trigger: CCAGCTCCTCCTGTTGCCCACCCTCTCCAGTGCATCTGCTGCTCAGTAGATGCCCTTGGTGTTTACGGGGTCAGCATGGGCTCTAGCGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 90 bp | GATAAAGCCAGCTACCTGAGGAGAGTGAGCTGGAAGTCTCAAGCCTaGGGCCCTCCCGGCAAGCACACCAGTCCTCTGGTGTTCCAACAC | + |
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Preference number: 1 (lower is better) Translates to: DKASYLRRVSWKSQA*GPPGKHTSPLVFQH Trigger: GTGTTGGAACACCAGAGGACTGGTGTGCTTGCCGGGAGGGCCTCAGGCTTGAGACTTCCAGCTCACTCTCCTCAGGTAGCTGGCTTTATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR CCA 90 bp | CATACGACAAGCCCCAGCTGCCGAGTGTCCTCCGTCAGCTTGTACTaGTCATCAGGGTCTGGTAGGATGAGAGGCAAGAGGACTGAGGTG | + |
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Preference number: 1 (lower is better) Translates to: HTTSPSCRVSSVSLY*SSGSGRMRGKRTEV Trigger: CACCTCAGTCCTCTTGCCTCTCATCCTACCAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 90 bp | CAGGGCACTACAGGGTGGACCTGCTTATACAGAGCTGAGATCCAGTaGGCCTTGGAGTCTCTGATGCAGGTAGACATTCCTGGCCGAGGA | + |
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Preference number: 1 (lower is better) Translates to: QGTTGWTCLYRAEIQ*ALESLMQVDIPGRG Trigger: TCCTCGGCCAGGAATGTCTACCTGCATCAGAGACTCCAAGGCTCACTGGATCTCAGCTCTGTATAAGCAGGTCCACCCTGTAGTGCCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 90 bp | GAGTGTCCTCCGTCAGCTTGTACTGGTCATCAGGGTCTGGTAGGATaGGAGGCAAGAGGACTGAGGTGCATATCTATCCATAGGCATGCC | + |
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Preference number: 1 (lower is better) Translates to: ECPPSACTGHQGLVG*EARGLRCISIHRHA Trigger: GGCATGCCTATGGATAGATATGCACCTCAGTCCTCTTGCCTCTCATCCTACCAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCAGGGGTCTGCTCAGGGCACTACAGGGTGGACCTGCTTATACAGAGCTGAGCACACCAGTCCTCTaGTGTTCCAACACTGCACCC | + |
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Preference number: 2 (lower is better) Translates to: GGRGLLRALQGGPAYTELSTPVL*CSNTAP Trigger: GGGTGCAGTGTTGGAACACCAGAGGACTGGTGTGCT...CAGCTCTGTATAAGCAGGTCCACCCTGTAGTGCCCTGAGCAGACCCCTGCCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR-3UTR TCA 90 bp | CACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTGCTAAGTGGGACCTCAGGGGCCTaGGAGTTCTCACTCACAGCT | + |
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Preference number: 2 (lower is better) Translates to: HPIEGRSLGLDRSPLLLSGTSGA*EFSLTA Trigger: AGCTGTGAGTGAGAACTCTCAGGCCCCTGAGGTCCC...ACTTAGCAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR CAA 90 bp | CCACGACATACGACAAGCCCCAGCTGCCGAGTGTCCTCCGTCAGCTaGTACTGGTCATCAGGGTCTGGTAGGATGAGAGGCAAGAGGACT | + |
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Preference number: 2 (lower is better) Translates to: PRHTTSPSCRVSSVS*YWSSGSGRMRGKRT Trigger: AGTCCTCTTGCCTCTCATCCTACCAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR-3UTR TCA 90 bp | GGTAAGCAGTCAGACATAACTGTCACGAGGGCTGGAGACAGGAAACCTGGTGTGAGAGCTGAGATCCAGTaGGCCTTGGAGTCTCTGATG | + |
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Preference number: 2 (lower is better) Translates to: GKQSDITVTRAGDRKPGVRAEIQ*ALESLM Trigger: CATCAGAGACTCCAAGGCTCACTGGATCTCAGCTCT...CACACCAGGTTTCCTGTCTCCAGCCCTCGTGACAGTTATGTCTGACTGCTTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR-3UTR GCA 90 bp | CTGAGAGTTCTCACTCACAGCTTCTGGGGACTGACAGATCCAGATGCTCTCAAAACTACAGGGTGGACCTaGTTATACAGAGCTGAGATC | + |
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Preference number: 2 (lower is better) Translates to: LRVLTHSFWGLTDPDALKTTGWT*LYRAEI Trigger: GATCTCAGCTCTGTATAAGCAGGTCCACCCTGTAGT...TTTGAGAGCATCTGGATCTGTCAGTCCCCAGAAGCTGTGAGTGAGAACTCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 72 bp | GGTTGGGGATGGCCTCCATGCCGTCCTGTGGGCAGATaGGCACCACCGAGGTGCCACGACATACGACAAGCC | + |
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Preference number: 3 (lower is better) Translates to: GWGWPPCRPVGR*APPRCHDIRQA Trigger: GGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAGGCCATCCCCAACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR CCA 72 bp | CACGAAGGGGTTGGGGATGGCCTCCATGCCGTCCTGTaGGCAGATGAGCACCACCGAGGTGCCACGACATAC | + |
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Preference number: 3 (lower is better) Translates to: HEGVGDGLHAVL*ADEHHRGATTY Trigger: GTATGTCGTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAGGCCATCCCCAACCCCTTCGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR GCA 72 bp | ACCACCGAGGTGCCACGACATACGACAAGCCCCAGCTaGCGAGTGTCCTCCGTCAGCTTGTACTGGTCATCA | + |
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Preference number: 3 (lower is better) Translates to: TTEVPRHTTSPS*RVSSVSLYWSS Trigger: TGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGGCACCTCGGTGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR-3UTR CAA 90 bp | CTGGACCGCTCTCCTTTGCTGCTAAGTGTCCTGCTGCTGCACGAAGGGGTTGGGGTGTCCTCCGTCAGCTaGTACTGGTCATCAGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: LDRSPLLLSVLLLHEGVGVSSVS*YWSSGS Trigger: AGACCCTGATGACCAGTACAAGCTGACGGAGGACAC...CCCAACCCCTTCGTGCAGCAGCAGGACACTTAGCAGCAAAGGAGAGCGGTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR CCA 72 bp | AGGGCATCTACTGAGCAGCAGATGCACTGGAGAGGGTaGGCAACAGGAGGAGCTGGTAAGCAGTCAGACATA | + |
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Preference number: 3 (lower is better) Translates to: RASTEQQMHWRG*ATGGAGKQSDI Trigger: TATGTCTGACTGCTTACCAGCTCCTCCTGTTGCCCACCCTCTCCAGTGCATCTGCTGCTCAGTAGATGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 72 bp | TCAGGGCACTACAGGGTGGACCTGCTTATACAGAGCTaGGATCCAGTGAGCCTTGGAGTCTCTGATGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: SGHYRVDLLIQS*DPVSLGVSDAG Trigger: ACCTGCATCAGAGACTCCAAGGCTCACTGGATCTCAGCTCTGTATAAGCAGGTCCACCCTGTAGTGCCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| 3UTR TCA 72 bp | ACAGGGTGGACCTGCTTATACAGAGCTGAGATCCAGTaGGCCTTGGAGTCTCTGATGCAGGTAGACATTCCT | + |
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Preference number: 3 (lower is better) Translates to: TGWTCLYRAEIQ*ALESLMQVDIP Trigger: AGGAATGTCTACCTGCATCAGAGACTCCAAGGCTCACTGGATCTCAGCTCTGTATAAGCAGGTCCACCCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS-3UTR TCA 90 bp | GAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTGCGTCCTGTGGGCAGATaGGCACCACCGAGGTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: EVHPIEGRSLGLDRSPLLRPVGR*APPRCH Trigger: GTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACG...CAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS-3UTR CCA 90 bp | CACAGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTGCACGAAGGGGTTaGGGATGGCCTCCATGCCGT | + |
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Preference number: 4 (lower is better) Translates to: HRSSPHRRKIPGAGPLSFAARRG*GWPPCR Trigger: ACGGCATGGAGGCCATCCCCAACCCCTTCGTGCAGC...AAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS-3UTR TCA 90 bp | GAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTGCATCCAGCACCAGGTTaGGCAGTGGGTCAAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: EVHPIEGRSLGLDRSPLLHPAPG*AVGQSP Trigger: AGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATG...CAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR TCA 90 bp | ATTCCTGCTGTCCTGAGGGCTGAGGATAAAGCCAGCTACCTGAGGAGAGTGAGCCCACCTGCTGTAATCTaGCCCCACAGGTCCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: IPAVLRAEDKASYLRRVSPPAVI*PHRSPA Trigger: TGCTGGGGACCTGTGGGGTCAGATTACAGCAGGTGG...GCTCACTCTCCTCAGGTAGCTGGCTTTATCCTCAGCCCTCAGGACAGCAGGAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | AGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTCTCCATGCCGTCCTGTaGGCAGATGAGCACCACCGA | + |
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Preference number: 4 (lower is better) Translates to: RSSPHRRKIPGAGPLSFALHAVL*ADEHHR Trigger: TCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAG...AGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| 3UTR CAA 72 bp | ATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTaGCTGCTAAGTGTCCTGCTGCTGCACGAAGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: IEGRSLGLDRSP*LLSVLLLHEGV Trigger: AACCCCTTCGTGCAGCAGCAGGACACTTAGCAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | ACAGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCACCAGGTTGAGCAGTaGGTCAAAGCCCTTCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: TEVHPIEGRSLGLDRSPLHQVEQ*VKALQD Trigger: ATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTG...CAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | AGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTCTCTCATGTACTCCATaGTCCCATCCAGCACCAGGT | + |
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Preference number: 4 (lower is better) Translates to: RSSPHRRKIPGAGPLSFALSCTP*SHPAPG Trigger: ACCTGGTGCTGGATGGGACCATGGAGTACATGAGAG...AGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | CACAGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTCTCTCATGTACTCCATaGTCCCATCCAGCACCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HRSSPHRRKIPGAGPLSFLSCTP*SHPAPG Trigger: ACCTGGTGCTGGATGGGACCATGGAGTACATGAGAG...AAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR TCA 90 bp | GTTCTCACTCACAGCTTCTGGGGACTGACAGATCCAGATGCTCTCAAAACACCTCATCCAGCACCAGGTTaGGCAGTGGGTCAAAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: VLTHSFWGLTDPDALKTPHPAPG*AVGQSP Trigger: AGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATG...AGGTGTTTTGAGAGCATCTGGATCTGTCAGTCCCCAGAAGCTGTGAGTGAGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | CACAGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGGAACTTCACCCGAATaGTCTTATCGATGTACTTGG | + |
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Preference number: 4 (lower is better) Translates to: HRSSPHRRKIPGAGPLSFGTSPE*SYRCTW Trigger: CCAAGTACATCGATAAGACCATTCGGGTGAAGTTCC...AAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | GAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTGTCTTATCGATGTACTTaGAGAGGTCCAAGATGCTTT | + |
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Preference number: 4 (lower is better) Translates to: EVHPIEGRSLGLDRSPLLSYRCT*RGPRCF Trigger: AAAGCATCTTGGACCTCTCCAAGTACATCGATAAGA...CAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | GGTAAGCAGTCAGACATAACTGTCACGAGGGCTGGAGACAGGAAACCTGGTGTGGGAACTTCACCCGAATaGTCTTATCGATGTACTTGG | + |
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Preference number: 4 (lower is better) Translates to: GKQSDITVTRAGDRKPGVGTSPE*SYRCTW Trigger: CCAAGTACATCGATAAGACCATTCGGGTGAAGTTCC...CACACCAGGTTTCCTGTCTCCAGCCCTCGTGACAGTTATGTCTGACTGCTTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS-3UTR CCA 90 bp | ACAGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGTCTTATCGATGTACTTaGAGAGGTCCAAGATGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TEVHPIEGRSLGLDRSPLSYRCT*RGPRCF Trigger: AAAGCATCTTGGACCTCTCCAAGTACATCGATAAGA...CAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR GCA 90 bp | AGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTTGGAGAGGTCCAAGATaGTTTCTTTCTTCTTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: RSSPHRRKIPGAGPLSFAWRGPR*FLSSFS Trigger: AGAAAAAGAAGAAAGAAAGCATCTTGGACCTCTCCA...AGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR GCA 90 bp | TGGAGAGGGTGGGCAACAGGAGGAGCTGGTAAGCAGTCAGACATAACTGTCACGTGGAGAGGTCCAAGATaGTTTCTTTCTTCTTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: WRGWATGGAGKQSDITVTWRGPR*FLSSFS Trigger: AGAAAAAGAAGAAAGAAAGCATCTTGGACCTCTCCA...CGTGACAGTTATGTCTGACTGCTTACCAGCTCCTCCTGTTGCCCACCCTCTCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS TCA 90 bp | CCGGCTCACCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTTaGGCAGTGGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: PAHLSCTPWSHPAPG*AVGQSPSGYRWLPG Trigger: GCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGGTGAGCCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS GCA 90 bp | CAGATGAGCACCACCGAGGTGCCACGACATACGACAAGCCCCAGCTaGCGAGTGTCCTCCGTCAGCTTGTACTGGTCATCAGGGTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: QMSTTEVPRHTTSPS*RVSSVSLYWSSGSL Trigger: GAGAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS CCA 90 bp | GTCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTTGAGCAGTaGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCGGCCACCCTG | + |
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Preference number: 5 (lower is better) Translates to: VSHVLHGPIQHQVEQ*VKALQDTAGFPATL Trigger: CAGGGTGGCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS CCA 90 bp | ACCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTTGAGCAGTaGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCGGCCACCCTG | + |
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Preference number: 5 (lower is better) Translates to: TSHVLHGPIQHQVEQ*VKALQDTAGFPATL Trigger: CAGGGTGGCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS-3UTR CAA 90 bp | AGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTTGCTGCACGAAGGGGTaGGGGATGGCCTCCATGCCG | + |
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Preference number: 5 (lower is better) Translates to: RSSPHRRKIPGAGPLSFACCTKG*GMASMP Trigger: CGGCATGGAGGCCATCCCCAACCCCTTCGTGCAGCA...AGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS TCA 90 bp | CATCAGGGTCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTTaGGCAGTGGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: HQGLSCTPWSHPAPG*AVGQSPSGYRWLPG Trigger: GCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGACCCTGATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS CCA 90 bp | CATACGACAAGCCCCAGCTGCCGAGTGTCCTCCGTCAGCTTGTACTaGTCATCAGGGTCTCTCATGTACTCCATGGTCCCATCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: HTTSPSCRVSSVSLY*SSGSLMYSMVPSST Trigger: GGTGCTGGATGGGACCATGGAGTACATGAGAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS-3UTR CAA 90 bp | CACAGAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGTGTCCTCCGTCAGCTaGTACTGGTCATCAGGGTCT | + |
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Preference number: 5 (lower is better) Translates to: HRSSPHRRKIPGAGPLSFVSSVS*YWSSGS Trigger: AGACCCTGATGACCAGTACAAGCTGACGGAGGACAC...AAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS CCA 90 bp | TCAGGATACCGCTGGCTTCCCGGCCACCCTGGAACTTCACCCGAATaGTCTTATCGATGTACTTGGAGAGGTCCAAGATGCTTTCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SGYRWLPGHPGTSPE*SYRCTWRGPRCFLS Trigger: AGAAAGAAAGCATCTTGGACCTCTCCAAGTACATCGATAAGACCATTCGGGTGAAGTTCCAGGGTGGCCGGGAAGCCAGCGGTATCCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS-3UTR CAA 90 bp | GAAGTTCACCCCATAGAAGGAAGATCCCTGGGGCTGGACCGCTCTCCTTTGCTGGTCTTATCGATGTACTaGGAGAGGTCCAAGATGCTT | + |
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Preference number: 5 (lower is better) Translates to: EVHPIEGRSLGLDRSPLLVLSMY*ERSKML Trigger: AAGCATCTTGGACCTCTCCAAGTACATCGATAAGAC...CAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS CCA 90 bp | CCCGGCCACCCTGGAACTTCACCCGAATGGTCTTATCGATGTACTTaGAGAGGTCCAAGATGCTTTCTTTCTTCTTTTTCTCTTTGTCCG | + |
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Preference number: 5 (lower is better) Translates to: PGHPGTSPEWSYRCT*RGPRCFLSSFSLCP Trigger: CGGACAAAGAGAAAAAGAAGAAAGAAAGCATCTTGGACCTCTCCAAGTACATCGATAAGACCATTCGGGTGAAGTTCCAGGGTGGCCGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS CAA 90 bp | GCCGGCTCACCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTaGAGCAGTGGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: AGSPLMYSMVPSSTR*SSGSKPFRIPLASR Trigger: CCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGGTGAGCCGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS CCA 72 bp | GTACTCCATGGTCCCATCCAGCACCAGGTTGAGCAGTaGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCG | + |
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Preference number: 6 (lower is better) Translates to: VLHGPIQHQVEQ*VKALQDTAGFP Trigger: CGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS CAA 90 bp | TCATCAGGGTCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTaGAGCAGTGGGTCAAAGCCCTTCAGGATACCGCTGGCTTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: SSGSLMYSMVPSSTR*SSGSKPFRIPLASR Trigger: CCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGACCCTGATGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS CAA 90 bp | CCACGACATACGACAAGCCCCAGCTGCCGAGTGTCCTCCGTCAGCTaGTACTGGTCATCAGGGTCTCTCATGTACTCCATGGTCCCATCC | + |
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Preference number: 6 (lower is better) Translates to: PRHTTSPSCRVSSVS*YWSSGSLMYSMVPS Trigger: GGATGGGACCATGGAGTACATGAGAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS TCA 72 bp | CTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTTaGGCAGTGGGTCAAAGCCCTTCAGGATACCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LSCTPWSHPAPG*AVGQSPSGYRW Trigger: CCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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| CDS CAA 72 bp | CCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTaGAGCAGTGGGTCAAAGCCCTTCAGGATACCGCTG | + |
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Preference number: 6 (lower is better) Translates to: PLMYSMVPSSTR*SSGSKPFRIPL Trigger: CAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220225.2 |
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| CDS CAA 72 bp | TCTCTCATGTACTCCATGGTCCCATCCAGCACCAGGTaGAGCAGTGGGTCAAAGCCCTTCAGGATACCGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLMYSMVPSSTR*SSGSKPFRIPL Trigger: CAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035775.9 |
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| CDS CAA 90 bp | TCCCGGCCACCCTGGAACTTCACCCGAATGGTCTTATCGATGTACTaGGAGAGGTCCAAGATGCTTTCTTTCTTCTTTTTCTCTTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: SRPPWNFTRMVLSMY*ERSKMLSFFFFSLS Trigger: GGACAAAGAGAAAAAGAAGAAAGAAAGCATCTTGGACCTCTCCAAGTACATCGATAAGACCATTCGGGTGAAGTTCCAGGGTGGCCGGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035775.9 ENSMUST00000220225.2 |
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