Pregenerated sensors for LSM6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031683Ensembl transcript IDs: ENSMUST00000051867.7, ENSMUST00000130325.8
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACACAGTCCACAGACAGCACAAGCCCGCTCAGCGGGAGTCACGTaGCCTGAAGGCCAAGAATACAACCCTTTCCCCAAGGCCACTTGC | + |
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Preference number: 1 (lower is better) Translates to: THSPQTAQARSAGVT*PEGQEYNPFPKATC Trigger: GCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGGACTGTGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR TCA 90 bp | CAGTCCACAGACAGCACAAGCCCGCTCAGCGGGAGTCACGTGACCTaGAGGCCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAG | + |
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Preference number: 1 (lower is better) Translates to: QSTDSTSPLSGSHVT*RPRIQPFPQGHLLK Trigger: CTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGGACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR TCA 90 bp | TGTCCTAGCTGCCTGGAAGCCAGTCTTCTCCTAGTGGCCTGCAGATaGAGATGTAGATCTCTCAGCTCCTCCTGCACCATGCCTGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: CPSCLEASLLLVACR*RCRSLSSSCTMPAW Trigger: CCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGATCTACATCTTCATCTGCAGGCCACTAGGAGAAGACTGGCTTCCAGGCAGCTAGGACA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR CCA 90 bp | TTGGCCCAGAGAGTGGCACTTCTTTGGACATGTGTCGCTGAGGCGTaGGCTTTAGCTTGTCCTAGCTGCCTGGAAGCCAGTCTTCTCCTA | + |
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Preference number: 1 (lower is better) Translates to: LAQRVALLWTCVAEA*ALACPSCLEASLLL Trigger: TAGGAGAAGACTGGCTTCCAGGCAGCTAGGACAAGCTAAAGCCCACGCCTCAGCGACACATGTCCAAAGAAGTGCCACTCTCTGGGCCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR CCA 90 bp | GTGAACCCTGTCTGCAGGCTGAGGGGGAACATGGTTCAGACCACATaGCCGCCATCTGTATTTGTACTCGTCTACAGCTCTGTTTGGGAT | + |
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Preference number: 1 (lower is better) Translates to: VNPVCRLRGNMVQTT*PPSVFVLVYSSVWD Trigger: ATCCCAAACAGAGCTGTAGACGAGTACAAATACAGATGGCGGCCATGTGGTCTGAACCATGTTCCCCCTCAGCCTGCAGACAGGGTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR GCA 90 bp | TGGCCTGCAGATGAAGATGTAGATCTCTCAGCTCCTCCTGCACCATaGCTGCCTGGATGCTGCCATGTTCCTGCCTTGATGATAATGAAC | + |
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Preference number: 1 (lower is better) Translates to: WPADEDVDLSAPPAP*LPGCCHVPALMIMN Trigger: GTTCATTATCATCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGATCTACATCTTCATCTGCAGGCCA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR TCA 90 bp | TGCTCTAAAACTGTCCGACCTCCCGAGACAGGGATCTGTTTAGATTaGAGGAGGGTAAGGAAAGCCCTAGCGTCCATGCAACCAAAGCAC | + |
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Preference number: 1 (lower is better) Translates to: CSKTVRPPETGICLD*RRVRKALASMQPKH Trigger: GTGCTTTGGTTGCATGGACGCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGTCGGACAGTTTTAGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR TCA 90 bp | ACATCATTAGGAACTCCTCGCATGCATTACATATGGCCTCAAACATaGTGCTCAAGATGTGAACCCTGTCTGCAGGCTGAGGGGGAACAT | + |
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Preference number: 1 (lower is better) Translates to: TSLGTPRMHYIWPQT*CSRCEPCLQAEGEH Trigger: ATGTTCCCCCTCAGCCTGCAGACAGGGTTCACATCTTGAGCATCATGTTTGAGGCCATATGTAATGCATGCGAGGAGTTCCTAATGATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR CCA 90 bp | ATAAGAGGTGCATACTGTCCACCCTGTCCTTTAGGCAAGACTTTGTaGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTG | + |
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Preference number: 1 (lower is better) Translates to: IRGAYCPPCPLGKTL*NHKWLINGNTHNCL Trigger: CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTTGCCTAAAGGACAGGGTGGACAGTATGCACCTCTTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR TCA 90 bp | AAACCATATGACTTTCTATCTACCTGCTTTAAATGGTACGGATGGTaGGTAGAGAAAGAGACAAAGGATGCCTCCAGAATGCTTGATCAC | + |
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Preference number: 1 (lower is better) Translates to: KPYDFLSTCFKWYGW*VEKETKDASRMLDH Trigger: GTGATCAAGCATTCTGGAGGCATCCTTTGTCTCTTTCTCTACTCACCATCCGTACCATTTAAAGCAGGTAGATAGAAAGTCATATGGTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR CAA 90 bp | CAGCCGAAGCTCAGTGCCTGGAAACTGAGTCTAAGCACTCTGGGCTaGCACCACCTCAGCCACAGCCAGTTTCTCAGGAACAGTAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: QPKLSAWKLSLSTLG*HHLSHSQFLRNSRA Trigger: AGCTCTACTGTTCCTGAGAAACTGGCTGTGGCTGAGGTGGTGCAAGCCCAGAGTGCTTAGACTCAGTTTCCAGGCACTGAGCTTCGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | TGGGCTTGCACCACCTCAGCCACAGCCAGTTTCTCAGGAACAGTAGAGCTCCTCTGCCTCCAGAATGCTTaGTCACAGGTTCCGGGATGT | + |
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Preference number: 2 (lower is better) Translates to: WACTTSATASFSGTVELLCLQNA*SQVPGC Trigger: ACATCCCGGAACCTGTGATCAAGCATTCTGGAGGCA...GAGGAGCTCTACTGTTCCTGAGAAACTGGCTGTGGCTGAGGTGGTGCAAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | CCAACTACAGTAGACACGGCAGCAGCTCCTGGGATAAAACCCCCTGCTGGACATTATGCTAATCTGCACTaGGGGACAGACTGGCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: PTTVDTAAAPGIKPPAGHYANLH*GTDWLL Trigger: AAGGAGCCAGTCTGTCCCTCAGTGCAGATTAGCATA...ATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | GCACAGCCGCTTGAAGGTCGTGAGGGAAAAACTGCAGTTGGCTTCTTTCACCAAGATGTGAACCCTGTCTaGAGGCTGAGGGGGAACATG | + |
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Preference number: 2 (lower is better) Translates to: AQPLEGREGKTAVGFFHQDVNPV*RLRGNM Trigger: CATGTTCCCCCTCAGCCTGCAGACAGGGTTCACATC...TTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR CCA 90 bp | AACTACAGTAGACACGGCAGCAGCTCCTGGGATAAAACCCCCTGCTGGACATTAGACAGACTGGCTCCTTaGCCTGGAATGCTGTCATCC | + |
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Preference number: 2 (lower is better) Translates to: NYSRHGSSSWDKTPCWTLDRLAP*PGMLSS Trigger: GGATGACAGCATTCCAGGCCAAGGAGCCAGTCTGTC...TAATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | CCACACACAGTCCACAGACAGCACAAGCCCGCTCAGCGGGAGTCACGTGACCTGTTTATAGCCCAAGGCTaGAACCATATGACTTTCTAT | + |
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Preference number: 2 (lower is better) Translates to: PHTVHRQHKPAQRESRDLFIAQG*NHMTFY Trigger: ATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAA...CAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGGACTGTGTGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | GCACAGCCGCTTGAAGGTCGTGAGGGAAAAACTGCAGTTGGCTTCTTTCACCAAAGGGAAATAAAGACCTaGAGGCTGGAGGGGAGGTCA | + |
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Preference number: 2 (lower is better) Translates to: AQPLEGREGKTAVGFFHQREIKT*RLEGRS Trigger: TGACCTCCCCTCCAGCCTGCAGGTCTTTATTTCCCT...TTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR CCA 90 bp | GCACAGCCGCTTGAAGGTCGTGAGGGAAAAACTGCAGTTGGCTTCTTTCACCAAACTGGCTCCTTGGCCTaGAATGCTGTCATCCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: AQPLEGREGKTAVGFFHQTGSLA*NAVIQE Trigger: CTCTTGGATGACAGCATTCCAGGCCAAGGAGCCAGT...TTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | CCAACTACAGTAGACACGGCAGCAGCTCCTGGGATAAAACCCCCTGCTGGACATATATGGCCTCAAACATaGTGCTCAAGATGTGAACCC | + |
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Preference number: 2 (lower is better) Translates to: PTTVDTAAAPGIKPPAGHIWPQT*CSRCEP Trigger: GGGTTCACATCTTGAGCATCATGTTTGAGGCCATAT...ATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | ACCTCCCGAGACAGGGATCTGTTTAGATTGAAGGAGGGTAAGGAAAGCCCTAGCCATGAAGAGTCTAACTaGACAGGAGGCTTCCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: TSRDRDLFRLKEGKESPSHEESN*TGGFQA Trigger: TGCCTGGAAGCCTCCTGTGCAGTTAGACTCTTCATG...GCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | AACTACAGTAGACACGGCAGCAGCTCCTGGGATAAAACCCCCTGCTGGACATTACATGAAGAGTCTAACTaGACAGGAGGCTTCCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: NYSRHGSSSWDKTPCWTLHEESN*TGGFQA Trigger: TGCCTGGAAGCCTCCTGTGCAGTTAGACTCTTCATG...TAATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTGTTTCTAATGAAGCTGACTGTAGCCTCCAGGGTGATGCGGCTCACACTTGCAGCCGAAGCTCAGTaGCTGGAAACTGAGTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: CLFLMKLTVASRVMRLTLAAEAQ*LETESK Trigger: CTTAGACTCAGTTTCCAGGCACTGAGCTTCGGCTGC...AAGTGTGAGCCGCATCACCCTGGAGGCTACAGTCAGCTTCATTAGAAACAAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR CAA 90 bp | TCTGGAAAGCAAGCACAAGTTCTGTTTCCTGCTAGACATTCTGTTTaGTCACGGCCCAAGAGAAAGATGGTGGCAACTGTGGTTGGGGGC | + |
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Preference number: 2 (lower is better) Translates to: SGKQAQVLFPARHSV*SRPKRKMVATVVGG Trigger: GCCCCCAACCACAGTTGCCACCATCTTTCTCTTGGGCCGTGACAAAACAGAATGTCTAGCAGGAAACAGAACTTGTGCTTGCTTTCCAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTCCCGAGACAGGGATCTGTTTAGATTGAAGGAGGGTAAGGAAAGCCCTAGCGACCTTTCCAATTCCTaGCTCTACAGTTGCACTCCT | + |
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Preference number: 2 (lower is better) Translates to: TSRDRDLFRLKEGKESPSDLSNS*LYSCTP Trigger: AGGAGTGCAACTGTAGAGTCAGGAATTGGAAAGGTC...GCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAACATGTGTGCTCCACTCCGAGAGACATCCATTTTCTCCTTTAAAGAAGCCGGGAGTCACGTGACCTaGAGGCCAAGAATACAACCC | + |
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Preference number: 2 (lower is better) Translates to: ENMCAPLRETSIFSFKEAGSHVT*RPRIQP Trigger: GGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCC...GGCTTCTTTAAAGGAGAAAATGGATGTCTCTCGGAGTGGAGCACACATGTTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | GCACAGCCGCTTGAAGGTCGTGAGGGAAAAACTGCAGTTGGCTTCTTTCACCAAGGGATCTGTTTAGATTaGAGGAGGGTAAGGAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: AQPLEGREGKTAVGFFHQGICLD*RRVRKA Trigger: GGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCC...TTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTCCCGAGACAGGGATCTGTTTAGATTGAAGGAGGGTAAGGAAAGCCCTAGCAATCAACCAATGGAATaGCAGGGCAGGAATCTTAGG | + |
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Preference number: 2 (lower is better) Translates to: TSRDRDLFRLKEGKESPSNQPME*QGRNLR Trigger: CCTAAGATTCCTGCCCTGTCATTCCATTGGTTGATT...GCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | CCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAAGGCGTAACCAGCCATTaGACCAACACTCTCAACAGG | + |
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Preference number: 2 (lower is better) Translates to: PRIQPFPQGHLLKQKAGEGVTSH*TNTLNR Trigger: CCTGTTGAGAGTGTTGGTGCAATGGCTGGTTACGCC...TTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | CCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAAGCAGCCGAAGCTCAGTaGCTGGAAACTGAGTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: PRIQPFPQGHLLKQKAGEAAEAQ*LETESK Trigger: CTTAGACTCAGTTTCCAGGCACTGAGCTTCGGCTGC...TTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | TCCAAGGTTGAGATCTTCCCACAAGAGGAACAAGCCAATACACCATTTTCTCTTGGGAGTCACGTGACCTaGAGGCCAAGAATACAACCC | + |
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Preference number: 2 (lower is better) Translates to: SKVEIFPQEEQANTPFSLGSHVT*RPRIQP Trigger: GGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCC...AAGAGAAAATGGTGTATTGGCTTGTTCCTCTTGTGGGAAGATCTCAACCTTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | TCCAAGGTTGAGATCTTCCCACAAGAGGAACAAGCCAATACACCATTTTCTCTTTGCCTCCAGAATGCTTaGTCACAGGTTCCGGGATGT | + |
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Preference number: 2 (lower is better) Translates to: SKVEIFPQEEQANTPFSLCLQNA*SQVPGC Trigger: ACATCCCGGAACCTGTGATCAAGCATTCTGGAGGCA...AAGAGAAAATGGTGTATTGGCTTGTTCCTCTTGTGGGAAGATCTCAACCTTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTCCCGAGACAGGGATCTGTTTAGATTGAAGGAGGGTAAGGAAAGCCCTAGCCCACCACTAACTAGGTaGCTAAATAAACAGCTGATT | + |
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Preference number: 2 (lower is better) Translates to: TSRDRDLFRLKEGKESPSPPLTR*LNKQLI Trigger: AATCAGCTGTTTATTTAGTCACCTAGTTAGTGGTGG...GCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | CCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAAACTTTCGCAGCCGAAGCTGACTTTCTATCTACCTaGTTTAAATGGTACGGATGG | + |
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Preference number: 2 (lower is better) Translates to: PQGHLLKQKAGETFAAEADFLST*FKWYGW Trigger: CCATCCGTACCATTTAAAGCAGGTAGATAGAAAGTC...AGCTTCGGCTGCGAAAGTTTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | TCCAAGGTTGAGATCTTCCCACAAGAGGAACAAGCCAATACACCATTTTCTCTTGCATGTATGCTAATCTaGACTGAGGGACAGACTGGC | + |
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Preference number: 2 (lower is better) Translates to: SKVEIFPQEEQANTPFSLACMLI*TEGQTG Trigger: GCCAGTCTGTCCCTCAGTGCAGATTAGCATACATGC...AAGAGAAAATGGTGTATTGGCTTGTTCCTCTTGTGGGAAGATCTCAACCTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR CCA 90 bp | AAGACTTTGTGGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTGGGTGGCAACTGTGGTTaGGGGCATAGGGACACGGAA | + |
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Preference number: 2 (lower is better) Translates to: KTLWNHKWLINGNTHNCLGGNCG*GHRDTE Trigger: TTCCGTGTCCCTATGCCCCCAACCACAGTTGCCACC...CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAACATGTGTGCTCCACTCCGAGAGACATCCATTTTCTCCTTTAAAGAAGCCAAATGGTACGGATGGTaGGTAGAGAAAGAGACAAAG | + |
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Preference number: 2 (lower is better) Translates to: ENMCAPLRETSIFSFKEAKWYGW*VEKETK Trigger: CTTTGTCTCTTTCTCTACTCACCATCCGTACCATTT...GGCTTCTTTAAAGGAGAAAATGGATGTCTCTCGGAGTGGAGCACACATGTTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | CCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAACCACCACTAACTAGGTaGCTAAATAAACAGCTGATT | + |
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Preference number: 2 (lower is better) Translates to: PRIQPFPQGHLLKQKAGEPPLTR*LNKQLI Trigger: AATCAGCTGTTTATTTAGTCACCTAGTTAGTGGTGG...TTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | GAGAACATGTGTGCTCCACTCCGAGAGACATCCATTTTCTCCTTTAAAGAAGCCGACTTTCTATCTACCTaGTTTAAATGGTACGGATGG | + |
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Preference number: 2 (lower is better) Translates to: ENMCAPLRETSIFSFKEADFLST*FKWYGW Trigger: CCATCCGTACCATTTAAAGCAGGTAGATAGAAAGTC...GGCTTCTTTAAAGGAGAAAATGGATGTCTCTCGGAGTGGAGCACACATGTTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | TCCAAGGTTGAGATCTTCCCACAAGAGGAACAAGCCAATACACCATTTTCTCTTTATCACAAGAAGGTATaGACAGGGGACAACATGTGC | + |
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Preference number: 2 (lower is better) Translates to: SKVEIFPQEEQANTPFSLYHKKV*TGDNMC Trigger: GCACATGTTGTCCCCTGTGCATACCTTCTTGTGATA...AAGAGAAAATGGTGTATTGGCTTGTTCCTCTTGTGGGAAGATCTCAACCTTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAACATGTGTGCTCCACTCCGAGAGACATCCATTTTCTCCTTTAAAGAAGCCTTTATAGCCCAAGGCTaGAACCATATGACTTTCTAT | + |
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Preference number: 2 (lower is better) Translates to: ENMCAPLRETSIFSFKEAFIAQG*NHMTFY Trigger: ATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAA...GGCTTCTTTAAAGGAGAAAATGGATGTCTCTCGGAGTGGAGCACACATGTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCTTTATAGCCCAAGGCTGAAACCATATGACTTTCTATCTACCTGCTTTAAAAATCAACCAATGGAATaGCAGGGCAGGAATCTTAGG | + |
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Preference number: 2 (lower is better) Translates to: SLYSPRLKPYDFLSTCFKNQPME*QGRNLR Trigger: CCTAAGATTCCTGCCCTGTCATTCCATTGGTTGATT...TTTAAAGCAGGTAGATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAAGGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | AAGACTTTGTGGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTGGACCTTTCCAATTCCTaGCTCTACAGTTGCACTCCT | + |
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Preference number: 2 (lower is better) Translates to: KTLWNHKWLINGNTHNCLDLSNS*LYSCTP Trigger: AGGAGTGCAACTGTAGAGTCAGGAATTGGAAAGGTC...CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR CCA 90 bp | AAGACTTTGTGGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTGATGGTTCAGACCACATaGCCGCCATCTGTATTTGTA | + |
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Preference number: 2 (lower is better) Translates to: KTLWNHKWLINGNTHNCLMVQTT*PPSVFV Trigger: TACAAATACAGATGGCGGCCATGTGGTCTGAACCAT...CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR TCA 90 bp | AAGACTTTGTGGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTGTGCTGTTTCCAACCTTaGGGAAATCCCTTAAGCATT | + |
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Preference number: 2 (lower is better) Translates to: KTLWNHKWLINGNTHNCLCCFQP*GNPLSI Trigger: AATGCTTAAGGGATTTCCTCAAGGTTGGAAACAGCA...CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
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| 3UTR-3UTR GCA 90 bp | AAGACTTTGTGGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTGGTTTTATTTTCAGTGTaGACACCATCAAACCTTACT | + |
|
Preference number: 2 (lower is better) Translates to: KTLWNHKWLINGNTHNCLVLFSV*TPSNLT Trigger: AGTAAGGTTTGATGGTGTGCACACTGAAAATAAAAC...CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR GCA 90 bp | AAGACTTTGTGGAATCACAAATGGTTGATCAATGGAAACACTCATAACTGCTTGAGAATTGATTCAGTCTaGAAGATTAGCCAAGGAATA | + |
|
Preference number: 2 (lower is better) Translates to: KTLWNHKWLINGNTHNCLRIDSV*KISQGI Trigger: TATTCCTTGGCTAATCTTGCAGACTGAATCAATTCT...CAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | CCACAGACAGCACAAGCCCGCTCAGCGGGAGTCACGTaGCCTGAAGGCCAAGAATACAACCCTTTCCCCAAG | + |
|
Preference number: 3 (lower is better) Translates to: PQTAQARSAGVT*PEGQEYNPFPK Trigger: CTTGGGGAAAGGGTTGTATTCTTGGCCTTCAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR GCA 72 bp | CTGTCCATCTGCCTCCACTTCCTCCAGCCGGGCAATTaGTCTAAAACTGTCCGACCTCCCGAGACAGGGATC | + |
|
Preference number: 3 (lower is better) Translates to: LSICLHFLQPGN*SKTVRPPETGI Trigger: GATCCCTGTCTCGGGAGGTCGGACAGTTTTAGAGCAATTGCCCGGCTGGAGGAAGTGGAGGCAGATGGACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | CAGGAGGCTTCCAGGCAGTGTCTCACCTCACGTGGCTaGCCTTTCCAATTCCTGACTCTACAGTTGCACTCC | + |
|
Preference number: 3 (lower is better) Translates to: QEASRQCLTSRG*PFQFLTLQLHS Trigger: GGAGTGCAACTGTAGAGTCAGGAATTGGAAAGGTCAGCCACGTGAGGTGAGACACTGCCTGGAAGCCTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | AGAGTGGCACTTCTTTGGACATGTGTCGCTGAGGCGTaGGCTTTAGCTTGTCCTAGCTGCCTGGAAGCCAGT | + |
|
Preference number: 3 (lower is better) Translates to: RVALLWTCVAEA*ALACPSCLEAS Trigger: ACTGGCTTCCAGGCAGCTAGGACAAGCTAAAGCCCACGCCTCAGCGACACATGTCCAAAGAAGTGCCACTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | TGCCTGGAAGCCAGTCTTCTCCTAGTGGCCTGCAGATaGAGATGTAGATCTCTCAGCTCCTCCTGCACCATG | + |
|
Preference number: 3 (lower is better) Translates to: CLEASLLLVACR*RCRSLSSSCTM Trigger: CATGGTGCAGGAGGAGCTGAGAGATCTACATCTTCATCTGCAGGCCACTAGGAGAAGACTGGCTTCCAGGCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR GCA 72 bp | AGTAGAGCTCCTCCCCTGGCTGGCGTAACCAGCCATTaGACCAACACTCTCAACAGGGAGCAAGTTAACATG | + |
|
Preference number: 3 (lower is better) Translates to: SRAPPLAGVTSH*TNTLNREQVNM Trigger: CATGTTAACTTGCTCCCTGTTGAGAGTGTTGGTGCAATGGCTGGTTACGCCAGCCAGGGGAGGAGCTCTACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR GCA 72 bp | GGCCTCAAACATGATGCTCAAGATGTGAACCCTGTCTaGAGGCTGAGGGGGAACATGGTTCAGACCACATGG | + |
|
Preference number: 3 (lower is better) Translates to: GLKHDAQDVNPV*RLRGNMVQTTW Trigger: CCATGTGGTCTGAACCATGTTCCCCCTCAGCCTGCAGACAGGGTTCACATCTTGAGCATCATGTTTGAGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | AAGCAGGAGAAACTTTCGCAGCCGAAGCTCAGTGCCTaGAAACTGAGTCTAAGCACTCTGGGCTTGCACCAC | + |
|
Preference number: 3 (lower is better) Translates to: KQEKLSQPKLSA*KLSLSTLGLHH Trigger: GTGGTGCAAGCCCAGAGTGCTTAGACTCAGTTTCCAGGCACTGAGCTTCGGCTGCGAAAGTTTCTCCTGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | GTCTGCAGGCTGAGGGGGAACATGGTTCAGACCACATaGCCGCCATCTGTATTTGTACTCGTCTACAGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: VCRLRGNMVQTT*PPSVFVLVYSS Trigger: AGAGCTGTAGACGAGTACAAATACAGATGGCGGCCATGTGGTCTGAACCATGTTCCCCCTCAGCCTGCAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | ACTGTCCGACCTCCCGAGACAGGGATCTGTTTAGATTaGAGGAGGGTAAGGAAAGCCCTAGCGTCCATGCAA | + |
|
Preference number: 3 (lower is better) Translates to: TVRPPETGICLD*RRVRKALASMQ Trigger: TTGCATGGACGCTAGGGCTTTCCTTACCCTCCTTCAATCTAAACAGATCCCTGTCTCGGGAGGTCGGACAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | GTCACTGTAAAGACGGGCATGTATGCTAATCTGCACTaGGGGACAGACTGGCTCCTTGGCCTGGAATGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: VTVKTGMYANLH*GTDWLLGLECC Trigger: ACAGCATTCCAGGCCAAGGAGCCAGTCTGTCCCTCAGTGCAGATTAGCATACATGCCCGTCTTTACAGTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | GAGAACATGTGTGCTCCACTCCGAGAGACATCCATTTTCTCCTTTAAAGAAGCCCTAAGCACTCTGGGCTaGCACCACCTCAGCCACAGC | + |
|
Preference number: 3 (lower is better) Translates to: ENMCAPLRETSIFSFKEALSTLG*HHLSHS Trigger: GCTGTGGCTGAGGTGGTGCAAGCCCAGAGTGCTTAG...GGCTTCTTTAAAGGAGAAAATGGATGTCTCTCGGAGTGGAGCACACATGTTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | TGCTTGTTTCTAATGAAGCTGACTGTAGCCTCCAGGGTGATGCGGCTCACACTTTACACACTGGTGCCTTaGCAAGCCCCTGTCAGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: CLFLMKLTVASRVMRLTLYTLVP*QAPVRK Trigger: CTTCCTGACAGGGGCTTGCAAAGGCACCAGTGTGTA...AAGTGTGAGCCGCATCACCCTGGAGGCTACAGTCAGCTTCATTAGAAACAAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | TGCTTGGCCAACTACAGTAGACACGGCAGCAGCTCCTaGGATAAAACCCCCTGCTGGACATTATTCAGATCA | + |
|
Preference number: 3 (lower is better) Translates to: CLANYSRHGSSS*DKTPCWTLFRS Trigger: TGATCTGAATAATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTTGGCCAAGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | ATGAGCAGAGCCGGGATGTTACAGACTGCTGGAGATAACAGCAGGGCTGCTTTCTTCCTGACTCTACAGTaGCACTCCTTTGTGGAGATA | + |
|
Preference number: 3 (lower is better) Translates to: MSRAGMLQTAGDNSRAAFFLTLQ*HSFVEI Trigger: TATCTCCACAAAGGAGTGCAACTGTAGAGTCAGGAA...GAAAGCAGCCCTGCTGTTATCTCCAGCAGTCTGTAACATCCCGGCTCTGCTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | AGTGTCTCACCTCACGTGGCTGACCTTTCCAATTCCTaGCTCTACAGTTGCACTCCTTTGTGGAGATACCAC | + |
|
Preference number: 3 (lower is better) Translates to: SVSPHVADLSNS*LYSCTPLWRYH Trigger: GTGGTATCTCCACAAAGGAGTGCAACTGTAGAGTCAGGAATTGGAAAGGTCAGCCACGTGAGGTGAGACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | GGAACTCCTCGCATGCATTACATATGGCCTCAAACATaGTGCTCAAGATGTGAACCCTGTCTGCAGGCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: GTPRMHYIWPQT*CSRCEPCLQAE Trigger: CTCAGCCTGCAGACAGGGTTCACATCTTGAGCATCATGTTTGAGGCCATATGTAATGCATGCGAGGAGTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | GTCACGGCCCAAGAGAAAGATGGTGGCAACTGTGGTTaGGGGCATAGGGACACGGAAAATGTATTTACTCAA | + |
|
Preference number: 3 (lower is better) Translates to: VTAQEKDGGNCG*GHRDTENVFTQ Trigger: TTGAGTAAATACATTTTCCGTGTCCCTATGCCCCCAACCACAGTTGCCACCATCTTTCTCTTGGGCCGTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | CCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAAACTTTCGCAGCCGAAGCTTTCCTGACTCTACAGTaGCACTCCTTTGTGGAGATA | + |
|
Preference number: 3 (lower is better) Translates to: PQGHLLKQKAGETFAAEAFLTLQ*HSFVEI Trigger: TATCTCCACAAAGGAGTGCAACTGTAGAGTCAGGAA...AGCTTCGGCTGCGAAAGTTTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | TGCTTGTTTCTAATGAAGCTGACTGTAGCCTCCAGGGTGATGCGGCTCACACTTGCTAGACATTCTGTTTaGTCACGGCCCAAGAGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: CLFLMKLTVASRVMRLTLARHSV*SRPKRK Trigger: CTTTCTCTTGGGCCGTGACAAAACAGAATGTCTAGC...AAGTGTGAGCCGCATCACCCTGGAGGCTACAGTCAGCTTCATTAGAAACAAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | GCACAGCCGCTTGAAGGTCGTGAGGGAAAAACTGCAGTTGGCTTCTTTCACCAAGTTTTCCCACAGTGCTaGTTTCTAATGAAGCTGACT | + |
|
Preference number: 3 (lower is better) Translates to: AQPLEGREGKTAVGFFHQVFPQC*FLMKLT Trigger: AGTCAGCTTCATTAGAAACAAGCACTGTGGGAAAAC...TTGGTGAAAGAAGCCAACTGCAGTTTTTCCCTCACGACCTTCAAGCGGCTGTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | TGCTTGTTTCTAATGAAGCTGACTGTAGCCTCCAGGGTGATGCGGCTCACACTTTTCCCAAAGTCCATCTaGATTAAAAGCGGTTCCATG | + |
|
Preference number: 3 (lower is better) Translates to: CLFLMKLTVASRVMRLTLFPKSI*IKSGSM Trigger: CATGGAACCGCTTTTAATCAAGATGGACTTTGGGAA...AAGTGTGAGCCGCATCACCCTGGAGGCTACAGTCAGCTTCATTAGAAACAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR-3UTR CAA 90 bp | AACTACAGTAGACACGGCAGCAGCTCCTGGGATAAAACCCCCTGCTGGACATTAAGGGAAAAACTGCAGTaGGCTTCTTTCACCAATAAT | + |
|
Preference number: 3 (lower is better) Translates to: NYSRHGSSSWDKTPCWTLREKLQ*ASFTNN Trigger: ATTATTGGTGAAAGAAGCCAACTGCAGTTTTTCCCT...TAATGTCCAGCAGGGGGTTTTATCCCAGGAGCTGCTGCCGTGTCTACTGTAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | CCATGTTCCTGCCTTGATGATAATGAACTGAATCTCTaGACCTGTAAGCCGGCCCCAGTTAAATGTGGTCCT | + |
|
Preference number: 3 (lower is better) Translates to: PCSCLDDNELNL*TCKPAPVKCGP Trigger: AGGACCACATTTAACTGGGGCCGGCTTACAGGTTCAGAGATTCAGTTCATTATCATCAAGGCAGGAACATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | GGATGCTGCCATGTTCCTGCCTTGATGATAATGAACTaGATCTCTGAACCTGTAAGCCGGCCCCAGTTAAAT | + |
|
Preference number: 3 (lower is better) Translates to: GCCHVPALMIMN*ISEPVSRPQLN Trigger: ATTTAACTGGGGCCGGCTTACAGGTTCAGAGATTCAGTTCATTATCATCAAGGCAGGAACATGGCAGCATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR GCA 72 bp | CACTTGAGGCTGTCTCTTGCCCTATTACATAAGAGGTaGATACTGTCCACCCTGTCCTTTAGGCAAGACTTT | + |
|
Preference number: 3 (lower is better) Translates to: HLRLSLALLHKR*ILSTLSFRQDF Trigger: AAAGTCTTGCCTAAAGGACAGGGTGGACAGTATGCACCTCTTATGTAATAGGGCAAGAGACAGCCTCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | TCCTTGGCCTGGAATGCTGTCATCCAAGAGGCACTGTaGATATCAAAGACAGTTTTCCCACAGTGCTTGTTT | + |
|
Preference number: 3 (lower is better) Translates to: SLAWNAVIQEAL*ISKTVFPQCLF Trigger: AAACAAGCACTGTGGGAAAACTGTCTTTGATATTCACAGTGCCTCTTGGATGACAGCATTCCAGGCCAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR GCA 72 bp | AATCACAAATGGTTGATCAATGGAAACACTCATAACTaGTTGGCCAACTACAGTAGACACGGCAGCAGCTCC | + |
|
Preference number: 3 (lower is better) Translates to: NHKWLINGNTHN*LANYSRHGSSS Trigger: GGAGCTGCTGCCGTGTCTACTGTAGTTGGCCAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | CCCTGTCCTTTAGGCAAGACTTTGTGGAATCACAAATaGTTGATCAATGGAAACACTCATAACTGCTTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: PCPLGKTLWNHK*LINGNTHNCLA Trigger: GGCCAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTTGCCTAAAGGACAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | GACTTTCTATCTACCTGCTTTAAATGGTACGGATGGTaGGTAGAGAAAGAGACAAAGGATGCCTCCAGAATG | + |
|
Preference number: 3 (lower is better) Translates to: DFLSTCFKWYGW*VEKETKDASRM Trigger: CATTCTGGAGGCATCCTTTGTCTCTTTCTCTACTCACCATCCGTACCATTTAAAGCAGGTAGATAGAAAGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | TTCACCCTACAACAATTGTCTTTGCTACCATCCAACTaGAAACCATTCACAGACCACGAGGAGACTACAGTT | + |
|
Preference number: 3 (lower is better) Translates to: FTLQQLSLLPSN*KPFTDHEETTV Trigger: AACTGTAGTCTCCTCGTGGTCTGTGAATGGTTTTCAGTTGGATGGTAGCAAAGACAATTGTTGTAGGGTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR CCA 72 bp | GCATACTGTCCACCCTGTCCTTTAGGCAAGACTTTGTaGAATCACAAATGGTTGATCAATGGAAACACTCAT | + |
|
Preference number: 3 (lower is better) Translates to: AYCPPCPLGKTL*NHKWLINGNTH Trigger: ATGAGTGTTTCCATTGATCAACCATTTGTGATTCCACAAAGTCTTGCCTAAAGGACAGGGTGGACAGTATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR TCA 72 bp | GATTTTCTGACCTCTTGTCCCTTTATAGCCCAAGGCTaGAACCATATGACTTTCTATCTACCTGCTTTAAAT | + |
|
Preference number: 3 (lower is better) Translates to: DFLTSCPFIAQG*NHMTFYLPALN Trigger: ATTTAAAGCAGGTAGATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAAGGGACAAGAGGTCAGAAAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR GCA 72 bp | GGGATAAACACTTTTGAAGTAAGAATTGATTCAGTCTaGAAGATTAGCCAAGGAATAGCTCACAGACCAAAA | + |
|
Preference number: 3 (lower is better) Translates to: GINTFEVRIDSV*KISQGIAHRPK Trigger: TTTTGGTCTGTGAGCTATTCCTTGGCTAATCTTGCAGACTGAATCAATTCTTACTTCAAAAGTGTTTATCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| CDS-3UTR TCA 90 bp | CCACACACAGTCCACAGACAGCACAAGCCCGCTCAGCGGGAGTCACGTGACCTGCATTGTTTCCTCGGATaGACGCATCTCCGTACTTAT | + |
|
Preference number: 4 (lower is better) Translates to: PHTVHRQHKPAQRESRDLHCFLG*THLRTY Trigger: ATAAGTACGGAGATGCGTTCATCCGAGGAAACAATG...CAGGTCACGTGACTCCCGCTGAGCGGGCTTGTGCTGTCTGTGGACTGTGTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| CDS-3UTR GCA 90 bp | TGGGCTTGCACCACCTCAGCCACAGCCAGTTTCTCAGGAACAGTAGAGCTCCTCGGCCGTCCGATGATCTaGTTTAAGAAGTCGCTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: WACTTSATASFSGTVELLGRPMI*FKKSLG Trigger: CCCTAGCGACTTCTTAAAGCAGATCATCGGACGGCC...GAGGAGCTCTACTGTTCCTGAGAAACTGGCTGTGGCTGAGGTGGTGCAAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| CDS-3UTR TCA 90 bp | ATGAGCAGAGCCGGGATGTTACAGACTGCTGGAGATAACAGCAGGGCTGCTTTCCAACTGGCCGTCCGATaGTCTGCTTTAAGAAGTCGC | + |
|
Preference number: 4 (lower is better) Translates to: MSRAGMLQTAGDNSRAAFQLAVR*SALRSR Trigger: GCGACTTCTTAAAGCAGATCATCGGACGGCCAGTTG...GAAAGCAGCCCTGCTGTTATCTCCAGCAGTCTGTAACATCCCGGCTCTGCTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| CDS-3UTR GCA 90 bp | CCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAAGGCCGTCCGATGATCTaGTTTAAGAAGTCGCTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: PRIQPFPQGHLLKQKAGEGRPMI*FKKSLG Trigger: CCCTAGCGACTTCTTAAAGCAGATCATCGGACGGCC...TTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR CAA 72 bp | CACAAATGGTTGATCAATGGAAACACTCATAACTGCTaGGCCAACTACAGTAGACACGGCAGCAGCTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HKWLINGNTHNC*ANYSRHGSSSW Trigger: CCAGGAGCTGCTGCCGTGTCTACTGTAGTTGGCCAAGCAGTTATGAGTGTTTCCATTGATCAACCATTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR CAA 72 bp | CAAGCACAAGTTCTGTTTCCTGCTAGACATTCTGTTTaGTCACGGCCCAAGAGAAAGATGGTGGCAACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: QAQVLFPARHSV*SRPKRKMVATV Trigger: CACAGTTGCCACCATCTTTCTCTTGGGCCGTGACAAAACAGAATGTCTAGCAGGAAACAGAACTTGTGCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| CDS-3UTR TCA 90 bp | CCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAACATTGTTTCCTCGGATaGACGCATCTCCGTACTTAT | + |
|
Preference number: 4 (lower is better) Translates to: PRIQPFPQGHLLKQKAGEHCFLG*THLRTY Trigger: ATAAGTACGGAGATGCGTTCATCCGAGGAAACAATG...TTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR CAA 72 bp | CGTGACAAGCATAGATTGGCTATGAGAACTCCAAGGTaGAGATCTTCCCACAAGAGGAACAAGCCAATACAC | + |
|
Preference number: 4 (lower is better) Translates to: RDKHRLAMRTPR*RSSHKRNKPIH Trigger: GTGTATTGGCTTGTTCCTCTTGTGGGAAGATCTCAACCTTGGAGTTCTCATAGCCAATCTATGCTTGTCACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| 3UTR CAA 72 bp | GCTCCTCTAACTTTTCAAGAAAGTAAGTGTGGTGGCTaGAATTTTGGCCCAGAGAGTGGCACTTCTTTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: APLTFQESKCGG*NFGPESGTSLD Trigger: GTCCAAAGAAGTGCCACTCTCTGGGCCAAAATTCAAGCCACCACACTTACTTTCTTGAAAAGTTAGAGGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| CDS-3UTR TCA 90 bp | TCCCTTTATAGCCCAAGGCTGAAACCATATGACTTTCTATCTACCTGCTTTAAACAACTGGCCGTCCGATaGTCTGCTTTAAGAAGTCGC | + |
|
Preference number: 4 (lower is better) Translates to: SLYSPRLKPYDFLSTCFKQLAVR*SALRSR Trigger: GCGACTTCTTAAAGCAGATCATCGGACGGCCAGTTG...TTTAAAGCAGGTAGATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAAGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| 3UTR CAA 72 bp | CTGCTGTTTCCAACCTTGAGGAAATCCCTTAAGCATTaGTTACTATCTGTCACATCATTAGGAACTCCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: LLFPTLRKSLKH*LLSVTSLGTPR Trigger: GCGAGGAGTTCCTAATGATGTGACAGATAGTAACAAATGCTTAAGGGATTTCCTCAAGGTTGGAAACAGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130325.8 |
||
| CDS-3UTR CAA 90 bp | CCAAGAATACAACCCTTTCCCCAAGGCCACTTGCTAAAGCAAAAAGCAGGAGAACTTATGTACAGCACATaGTTTCCTCGGATGAACGCA | + |
|
Preference number: 5 (lower is better) Translates to: PRIQPFPQGHLLKQKAGELMYST*FPRMNA Trigger: TGCGTTCATCCGAGGAAACAATGTGCTGTACATAAG...TTCTCCTGCTTTTTGCTTTAGCAAGTGGCCTTGGGGAAAGGGTTGTATTCTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
||
| CDS-3UTR CAA 90 bp | TCCCTTTATAGCCCAAGGCTGAAACCATATGACTTTCTATCTACCTGCTTTAAACTTATGTACAGCACATaGTTTCCTCGGATGAACGCA | + |
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Preference number: 5 (lower is better) Translates to: SLYSPRLKPYDFLSTCFKLMYST*FPRMNA Trigger: TGCGTTCATCCGAGGAAACAATGTGCTGTACATAAG...TTTAAAGCAGGTAGATAGAAAGTCATATGGTTTCAGCCTTGGGCTATAAAGGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051867.7 ENSMUST00000130325.8 |
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