Pregenerated sensors for LSM4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031848Ensembl transcript IDs: ENSMUST00000034311.15, ENSMUST00000210071.2, ENSMUST00000210987.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGACTTCACTGGACCAGACGCCAAGTGGGGCTTCACACAAAGGTaGCCTGAGGCCTCACCCACCGTTCTGGGCTCGGCTCAGGCAGGG | + |
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Preference number: 1 (lower is better) Translates to: RDFTGPDAKWGFTQR*PEASPTVLGSAQAG Trigger: CCCTGCCTGAGCCGAGCCCAGAACGGTGGGTGAGGCCTCAGGGCACCTTTGTGTGAAGCCCCACTTGGCGTCTGGTCCAGTGAAGTCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR CCA 90 bp | CGCCATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTaGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCA | + |
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Preference number: 1 (lower is better) Translates to: RHGLSLQLQLKLKHA*KKSALQRASKAPQA Trigger: TGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGCTCCACAGGCACCTCAGACTCGGAACCTTCCAGAAACTGAGTCAGTGGCCCCTCACCCACCGTTCTaGGCTCGGCTCAGGCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: KAPQAPQTRNLPETESVAPHPPF*ARLRQG Trigger: TCCCTGCCTGAGCCGAGCCCAGAACGGTGGGTGAGG...GGCCACTGACTCAGTTTCTGGAAGGTTCCGAGTCTGAGGTGCCTGTGGAGCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGGACAGGTGAGCCGCCATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACCTCACCCACCGTTCTaGGCTCGGCTCAGGCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: KGQVSRHGLSLQLQLKLKPHPPF*ARLRQG Trigger: TCCCTGCCTGAGCCGAGCCCAGAACGGTGGGTGAGG...TTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATGGCGGCTCACCTGTCCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR TCA 90 bp | AGGACAGGTGAGCCGCCATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACACACACAAAGGTGCCCTaGGGCCTCACCCACCGTTCT | + |
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Preference number: 2 (lower is better) Translates to: RTGEPPWAEPAAPTETQTHTKVP*GLTHRS Trigger: AGAACGGTGGGTGAGGCCTCAGGGCACCTTTGTGTG...TGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATGGCGGCTCACCTGTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTGGCTTCACACAAAGGTaGCCTGAGGCCTCACCCACC | + |
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Preference number: 2 (lower is better) Translates to: AEPAAPTETQTCLEEVSPGFTQR*PEASPT Trigger: GGTGGGTGAGGCCTCAGGGCACCTTTGTGTGAAGCC...AGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR CCA 90 bp | GCATCTAAGGCTCCACAGGCACCTCAGACTCGGAACCTTCCAGAAACTGAGTCAAGCGAGGGACTTCACTaGACCAGACGCCAAGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: ASKAPQAPQTRNLPETESSEGLH*TRRQVG Trigger: CCCCACTTGGCGTCTGGTCCAGTGAAGTCCCTCGCT...TGACTCAGTTTCTGGAAGGTTCCGAGTCTGAGGTGCCTGTGGAGCCTTAGATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR TCA 90 bp | GCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTGAACCTTCCAGAAACTaGGTCAGTGGCCAGCGAGGG | + |
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Preference number: 2 (lower is better) Translates to: AEPAAPTETQTCLEEVSPEPSRN*VSGQRG Trigger: CCCTCGCTGGCCACTGACTCAGTTTCTGGAAGGTTC...AGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR CCA 90 bp | AGGACAGGTGAGCCGCCATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACACAGAAACTGAGTCAGTaGCCAGCGAGGGACTTCACT | + |
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Preference number: 2 (lower is better) Translates to: RTGEPPWAEPAAPTETQTQKLSQ*PARDFT Trigger: AGTGAAGTCCCTCGCTGGCCACTGACTCAGTTTCTG...TGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATGGCGGCTCACCTGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCACACACAAAGGTGCCCTaGGGCCTCACCCACCGTTCT | + |
|
Preference number: 2 (lower is better) Translates to: QLQLKLKHAWKKSALQRAHTKVP*GLTHRS Trigger: AGAACGGTGGGTGAGGCCTCAGGGCACCTTTGTGTG...TGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCAGGCTTCACACAAAGGTaGCCTGAGGCCTCACCCACC | + |
|
Preference number: 2 (lower is better) Translates to: QLQLKLKHAWKKSALQRAGFTQR*PEASPT Trigger: GGTGGGTGAGGCCTCAGGGCACCTTTGTGTGAAGCC...TGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR-3UTR CCA 90 bp | AAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACAGAAACTGAGTCAGTaGCCAGCGAGGGACTTCACT | + |
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Preference number: 2 (lower is better) Translates to: KHAWKKSALQRASKAPQAQKLSQ*PARDFT Trigger: AGTGAAGTCCCTCGCTGGCCACTGACTCAGTTTCTG...TGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR TCA 72 bp | ACCAGACGCCAAGTGGGGCTTCACACAAAGGTGCCCTaGGGCCTCACCCACCGTTCTGGGCTCGGCTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: TRRQVGLHTKVP*GLTHRSGLGSG Trigger: GCCTGAGCCGAGCCCAGAACGGTGGGTGAGGCCTCAGGGCACCTTTGTGTGAAGCCCCACTTGGCGTCTGGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR GCA 72 bp | ACTGGACCAGACGCCAAGTGGGGCTTCACACAAAGGTaGCCTGAGGCCTCACCCACCGTTCTGGGCTCGGCT | + |
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Preference number: 3 (lower is better) Translates to: TGPDAKWGFTQR*PEASPTVLGSA Trigger: AGCCGAGCCCAGAACGGTGGGTGAGGCCTCAGGGCACCTTTGTGTGAAGCCCCACTTGGCGTCTGGTCCAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR TCA 72 bp | TCCACAGGCACCTCAGACTCGGAACCTTCCAGAAACTaGGTCAGTGGCCAGCGAGGGACTTCACTGGACCAG | + |
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Preference number: 3 (lower is better) Translates to: STGTSDSEPSRN*VSGQRGTSLDQ Trigger: CTGGTCCAGTGAAGTCCCTCGCTGGCCACTGACTCAGTTTCTGGAAGGTTCCGAGTCTGAGGTGCCTGTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR CCA 72 bp | CCAGAAACTGAGTCAGTGGCCAGCGAGGGACTTCACTaGACCAGACGCCAAGTGGGGCTTCACACAAAGGTG | + |
|
Preference number: 3 (lower is better) Translates to: PETESVASEGLH*TRRQVGLHTKV Trigger: CACCTTTGTGTGAAGCCCCACTTGGCGTCTGGTCCAGTGAAGTCCCTCGCTGGCCACTGACTCAGTTTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| 3UTR CCA 72 bp | CACCTCAGACTCGGAACCTTCCAGAAACTGAGTCAGTaGCCAGCGAGGGACTTCACTGGACCAGACGCCAAG | + |
|
Preference number: 3 (lower is better) Translates to: HLRLGTFQKLSQ*PARDFTGPDAK Trigger: CTTGGCGTCTGGTCCAGTGAAGTCCCTCGCTGGCCACTGACTCAGTTTCTGGAAGGTTCCGAGTCTGAGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR CCA 90 bp | CATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTGCCTGCCTGCCGCCCTaGCTTCTTCTCGGGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: HAWKKSALQRASKAPQAPACLPP*LLLGLA Trigger: GGCCAGCCCGAGAAGAAGCCAGGGCGGCAGGCAGGC...AGGTGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR CCA 90 bp | ATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTCGCCTGCCTGCCGCCCTaGCTTCTTCTCGGGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: MPGRSQPFKGHLRLHRHLACLPP*LLLGLA Trigger: GGCCAGCCCGAGAAGAAGCCAGGGCGGCAGGCAGGC...GAGGTGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | GGTATGGCTGGTAAAGGACAGGTGAGCCGCCATGGGCTGAGCCTGCAGCTCCAACCTTTCTGCTGCTTCTaGTGCTGCGGTCCTCCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: GMAGKGQVSRHGLSLQLQPFCCF*CCGPPR Trigger: GCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGG...TTGGAGCTGCAGGCTCAGCCCATGGCGGCTCACCTGTCCTTTACCAGCCATACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | CATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTGGCCAGCGCCGCCCATaGCTCGGCCTTTCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HAWKKSALQRASKAPQAPGQRRP*LGLSAA Trigger: AGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCC...AGGTGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCATG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | AGGACAGGTGAGCCGCCATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACACCTTTCTGCTGCTTCTaGTGCTGCGGTCCTCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: RTGEPPWAEPAAPTETQTPFCCF*CCGPPR Trigger: GCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGG...TGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATGGCGGCTCACCTGTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | CATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGGCCAGCGCCGCCCATaGCTCGGCCTTTCTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HGLSLQLQLKLKHAWKKSGQRRP*LGLSAA Trigger: AGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCC...TGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR CCA 90 bp | AAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCAGGCTTCTTCTCGGGCTaGCCTCGGCCTGCACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: KHAWKKSALQRASKAPQAGFFSG*PRPAPG Trigger: CCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCC...TGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | GGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTCAGACTCTTCTGCTGCTTCTGCTaGTGCGGTCCTCCTCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GRSQPFKGHLRLHRHLRLFCCFC*CGPPRP Trigger: AGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAA...GAGTCTGAGGTGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | ATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTCTTCTGCTGCTTCTGCTaGTGCGGTCCTCCTCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: MPGRSQPFKGHLRLHRHLFCCFC*CGPPRP Trigger: AGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAA...GAGGTGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | ATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTCCCTCGGCCTTTCTGCTaGTTCTGCTGCTGCGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: MPGRSQPFKGHLRLHRHLPRPFC*FCCCGP Trigger: AGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGG...GAGGTGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | AAGGCTCCACAGGCACCTCAGACTCGGAACCTTCCAGAAACTGAGTCAGTGGCCATGCCTCGGCCTTTCTaGTGCTTCTGCTGCTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: KAPQAPQTRNLPETESVAMPRPF*CFCCCG Trigger: ACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCAT...GGCCACTGACTCAGTTTCTGGAAGGTTCCGAGTCTGAGGTGCCTGTGGAGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR CCA 90 bp | CAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCAGGCTTCTTCTCGGGCTaGCCTCGGCCTGCACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: QLQLKLKHAWKKSALQRAGFFSG*PRPAPG Trigger: CCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCC...TGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | GCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTCACTGTTTGCCTGCCTaGCGCCCTGGCTTCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: AEPAAPTETQTCLEEVSPHCLPA*RPGFFS Trigger: CGAGAAGAAGCCAGGGCGGCAGGCAGGCAAACAGTG...AGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR TCA 90 bp | TGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCGGATGCGCAGGTACTTaGTGGTGCTGCCACGGATGT | + |
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Preference number: 4 (lower is better) Translates to: WAEPAAPTETQTCLEEVSGCAGT*WCCHGC Trigger: ACATCCGTGGCAGCACCATCAAGTACCTGCGCATCC...GCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | CCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTTCAAAGCACCATCCCGCGACGTaGAGATCACCTCCCGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: PAAPTETQTCLEEVSPSKHHPAT*RSPPGG Trigger: ACCTCCGGGAGGTGATCTGCACGTCGCGGGATGGTG...CTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034311.15 |
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| CDS-3UTR GCA 90 bp | AAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCATCTAAGGCTCCACAGGCACCTCGGCCTTTCTGCTaGTTCTGCTGCTGCGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: KHAWKKSALQRASKAPQAPRPFC*FCCCGP Trigger: AGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGG...TGCCTGTGGAGCCTTAGATGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | GCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTATGCCTCGGCCTTTCTaGTGCTTCTGCTGCTGCGGT | + |
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Preference number: 4 (lower is better) Translates to: AEPAAPTETQTCLEEVSPMPRPF*CFCCCG Trigger: ACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCAT...AGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR GCA 90 bp | CATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCACACTGTTTGCCTGCCTaGCGCCCTGGCTTCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: HGLSLQLQLKLKHAWKKSHCLPA*RPGFFS Trigger: CGAGAAGAAGCCAGGGCGGCAGGCAGGCAAACAGTG...TGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR TCA 90 bp | TGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCCGCACCATGTCAATaGTCTCATCAGGGATGCGCA | + |
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Preference number: 4 (lower is better) Translates to: WAEPAAPTETQTCLEEVSPAPCQ*SHQGCA Trigger: TGCGCATCCCTGATGAGATCATTGACATGGTGCGGG...GCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR TCA 90 bp | CAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTTCAAAGGGCAGGATGCGCAGGTACTTaGTGGTGCTGCCACGGATGT | + |
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Preference number: 4 (lower is better) Translates to: QLQLKLKHAWKKSALQRAGCAGT*WCCHGC Trigger: ACATCCGTGGCAGCACCATCAAGTACCTGCGCATCC...TGCCCTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR TCA 90 bp | CATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCACCCGCACCATGTCAATaGTCTCATCAGGGATGCGCA | + |
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Preference number: 4 (lower is better) Translates to: HGLSLQLQLKLKHAWKKSPAPCQ*SHQGCA Trigger: TGCGCATCCCTGATGAGATCATTGACATGGTGCGGG...TGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR TCA 90 bp | CATGGGCTGAGCCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCATCACCTCCCGGAGGTTaGTGTTCATCCAGTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: HGLSLQLQLKLKHAWKKSSPPGG*CSSSCH Trigger: GTGACAACTGGATGAACATCAACCTCCGGGAGGTGA...TGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGGCTCAGCCCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034311.15 |
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| CDS GCA 90 bp | GCCGCCCTGGCTTCTTCTCGGGCTGGCCTCGGCCTGCACCTGGGATaGCACCCCGGCCCCGGCCACCAAACACACCTCGGCCAGCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: AALASSRAGLGLHLG*HPGPGHQTHLGQRR Trigger: GCGGCGCTGGCCGAGGTGTGTTTGGTGGCCGGGGCCGGGGTGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCCAGGGCGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 90 bp | CCTCGGCCAGCGCCGCCCATGCCTCGGCCTTTCTGCTGCTTCTGCTaGTGCGGTCCTCCTCGCCCTCGGCCCTTGGCGGCCTCCTCCCGC | + |
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Preference number: 5 (lower is better) Translates to: PRPAPPMPRPFCCFC*CGPPRPRPLAASSR Trigger: GCGGGAGGAGGCCGCCAAGGGCCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS CCA 90 bp | TGCCTGCCGCCCTGGCTTCTTCTCGGGCTGGCCTCGGCCTGCACCTaGGATGCCACCCCGGCCCCGGCCACCAAACACACCTCGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: CLPPWLLLGLASACT*DATPAPATKHTSAS Trigger: GCTGGCCGAGGTGTGTTTGGTGGCCGGGGCCGGGGTGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCCAGGGCGGCAGGCA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 90 bp | ACACCTCGGCCAGCGCCGCCCATGCCTCGGCCTTTCTGCTGCTTCTaGTGCTGCGGTCCTCCTCGCCCTCGGCCCTTGGCGGCCTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: TPRPAPPMPRPFCCF*CCGPPRPRPLAASS Trigger: GGAGGAGGCCGCCAAGGGCCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGGTGT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 90 bp | CCAAACACACCTCGGCCAGCGCCGCCCATGCCTCGGCCTTTCTGCTaGTTCTGCTGCTGCGGTCCTCCTCGCCCTCGGCCCTTGGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: PNTPRPAPPMPRPFC*FCCCGPPRPRPLAA Trigger: GGCCGCCAAGGGCCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGGTGTGTTTGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 90 bp | TTTGCCTGCCTGCCGCCCTGGCTTCTTCTCGGGCTGGCCTCGGCCTaGACCTGGGATGCCACCCCGGCCCCGGCCACCAAACACACCTCG | + |
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Preference number: 5 (lower is better) Translates to: FACLPPWLLLGLASA*TWDATPAPATKHTS Trigger: CGAGGTGTGTTTGGTGGCCGGGGCCGGGGTGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCCAGGGCGGCAGGCAGGCAAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 90 bp | CCACCAAACACACCTCGGCCAGCGCCGCCCATGCCTCGGCCTTTCTaGTGCTTCTGCTGCTGCGGTCCTCCTCGCCCTCGGCCCTTGGCG | + |
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Preference number: 5 (lower is better) Translates to: PPNTPRPAPPMPRPF*CFCCCGPPRPRPLA Trigger: CGCCAAGGGCCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGGTGTGTTTGGTGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS-3UTR CAA 90 bp | GGTATGGCTGGTAAAGGACAGGTGAGCCGCCATGGGCTGAGCCTGCAGCTCCAAGGGATGCGCAGGTACTaGATGGTGCTGCCACGGATG | + |
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Preference number: 5 (lower is better) Translates to: GMAGKGQVSRHGLSLQLQGMRRY*MVLPRM Trigger: CATCCGTGGCAGCACCATCAAGTACCTGCGCATCCC...TTGGAGCTGCAGGCTCAGCCCATGGCGGCTCACCTGTCCTTTACCAGCCATACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS-3UTR CAA 90 bp | TCTAAGGCTCCACAGGCACCTCAGACTCGGAACCTTCCAGAAACTGAGTCAGTGGGGATGCGCAGGTACTaGATGGTGCTGCCACGGATG | + |
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Preference number: 5 (lower is better) Translates to: SKAPQAPQTRNLPETESVGMRRY*MVLPRM Trigger: CATCCGTGGCAGCACCATCAAGTACCTGCGCATCCC...CACTGACTCAGTTTCTGGAAGGTTCCGAGTCTGAGGTGCCTGTGGAGCCTTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034311.15 ENSMUST00000210987.2 |
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| CDS TCA 90 bp | AGAACTTGTCACCATCCCGCGACGTGCAGATCACCTCCCGGAGGTTaGTGTTCATCCAGTTGTCACAGCTCACCAGATGCCCGTTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: RTCHHPATCRSPPGG*CSSSCHSSPDARCR Trigger: CCTACAACGGGCATCTGGTGAGCTGTGACAACTGGATGAACATCAACCTCCGGGAGGTGATCTGCACGTCGCGGGATGGTGACAAGTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034311.15 |
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| CDS-3UTR CAA 90 bp | CCTGCAGCTCCAACTGAAACTCAAACATGCCTGGAAGAAGTCAGCCCTTCAAAGATCACCTCCCGGAGGTaGATGTTCATCCAGTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: PAAPTETQTCLEEVSPSKITSRR*MFIQLS Trigger: TGACAACTGGATGAACATCAACCTCCGGGAGGTGAT...CTTTGAAGGGCTGACTTCTTCCAGGCATGTTTGAGTTTCAGTTGGAGCTGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034311.15 |
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| CDS GCA 72 bp | CCTCGGCCAGCGCCGCCCATGCCTCGGCCTTTCTGCTaGTTCTGCTGCTGCGGTCCTCCTCGCCCTCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PRPAPPMPRPFC*FCCCGPPRPRP Trigger: GGGCCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 72 bp | CTGCCGCCCTGGCTTCTTCTCGGGCTGGCCTCGGCCTaGACCTGGGATGCCACCCCGGCCCCGGCCACCAAA | + |
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Preference number: 6 (lower is better) Translates to: LPPWLLLGLASA*TWDATPAPATK Trigger: TTTGGTGGCCGGGGCCGGGGTGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCCAGGGCGGCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 72 bp | CCAGCGCCGCCCATGCCTCGGCCTTTCTGCTGCTTCTaGTGCTGCGGTCCTCCTCGCCCTCGGCCCTTGGCG | + |
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Preference number: 6 (lower is better) Translates to: PAPPMPRPFCCF*CCGPPRPRPLA Trigger: CGCCAAGGGCCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 72 bp | GCTTCTTCTCGGGCTGGCCTCGGCCTGCACCTGGGATaGCACCCCGGCCCCGGCCACCAAACACACCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: ASSRAGLGLHLG*HPGPGHQTHLG Trigger: GCCGAGGTGTGTTTGGTGGCCGGGGCCGGGGTGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS CCA 72 bp | CCCTGGCTTCTTCTCGGGCTGGCCTCGGCCTGCACCTaGGATGCCACCCCGGCCCCGGCCACCAAACACACC | + |
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Preference number: 6 (lower is better) Translates to: PWLLLGLASACT*DATPAPATKHT Trigger: GGTGTGTTTGGTGGCCGGGGCCGGGGTGGCATCCCAGGTGCAGGCCGAGGCCAGCCCGAGAAGAAGCCAGGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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| CDS GCA 72 bp | ACACCTCGGCCAGCGCCGCCCATGCCTCGGCCTTTCTaGTGCTTCTGCTGCTGCGGTCCTCCTCGCCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: TPRPAPPMPRPF*CFCCCGPPRPR Trigger: CCGAGGGCGAGGAGGACCGCAGCAGCAGAAGCAGCAGAAAGGCCGAGGCATGGGCGGCGCTGGCCGAGGTGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034311.15 ENSMUST00000210071.2 ENSMUST00000210987.2 |
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