Pregenerated sensors for LSM3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034192

Ensembl transcript IDs: ENSMUST00000040607.6, ENSMUST00000206947.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	CTGGAGAAAGGGACAGGTCATTTAGCTGGAGAGCTTGTGAGTTGCTTGCAAATGGTGAGCGTCTCTCTCTaGGAGTGTCCTGTACATCTC	+
Preference number: 2 (lower is better) Translates to: LEKGTGHLAGELVSCLQMVSVSL*ECPVHL Trigger: GAGATGTACAGGACACTCCCAGAGAGAGACGCTCAC...CATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCCTTTCTCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
3UTR-3UTR GCA 90 bp	ACAATGGGCAAACCAACTCCTGAAAAGAGCAAGACGGTCACACTGACTGGAGGGGGAGAGCTTGTGAGTTaGTTGCAAATGAACTTCTTC	+
Preference number: 2 (lower is better) Translates to: TMGKPTPEKSKTVTLTGGGELVS*LQMNFF Trigger: GAAGAAGTTCATTTGCAAGCAACTCACAAGCTCTCC...CCCTCCAGTCAGTGTGACCGTCTTGCTCTTTTCAGGAGTTGGTTTGCCCATTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
3UTR-3UTR CCA 90 bp	GAAAGGGACAGGTCATTTAGCTGGAGAGCTTGTGAGTTGCTTGCAAATGAACTTGTGAGCGTCTCTCTCTaGGAGTGTCCTGTACATCTC	+
Preference number: 2 (lower is better) Translates to: ERDRSFSWRACELLANELVSVSL*ECPVHL Trigger: GAGATGTACAGGACACTCCCAGAGAGAGACGCTCAC...AAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCCTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
3UTR CCA 72 bp	GACTGGAGGGCTGGAGAAAGGGACAGGTCATTTAGCTaGAGAGCTTGTGAGTTGCTTGCAAATGAACTTCTT	+
Preference number: 3 (lower is better) Translates to: DWRAGERDRSFS*RACELLANELL Trigger: AAGAAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCCTTTCTCCAGCCCTCCAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
3UTR GCA 72 bp	AAAGGGACAGGTCATTTAGCTGGAGAGCTTGTGAGTTaGTTGCAAATGAACTTCTTCGAGGGTAGAGTGATC	+
Preference number: 3 (lower is better) Translates to: KGTGHLAGELVS*LQMNFFEGRVI Trigger: GATCACTCTACCCTCGAAGAAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
3UTR CAA 72 bp	GGGACAGGTCATTTAGCTGGAGAGCTTGTGAGTTGCTaGCAAATGAACTTCTTCGAGGGTAGAGTGATCCTG	+
Preference number: 4 (lower is better) Translates to: GTGHLAGELVSC*QMNFFEGRVIL Trigger: CAGGATCACTCTACCCTCGAAGAAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
CDS-3UTR CCA 90 bp	GAAAGGGACAGGTCATTTAGCTGGAGAGCTTGTGAGTTGCTTGCAAATGAACTTGCTCCTCTACGGTATTaGTGGTCTGTTGCTGATCTA	+
Preference number: 4 (lower is better) Translates to: ERDRSFSWRACELLANELAPLRY*WSVADL Trigger: TAGATCAGCAACAGACCACCAATACCGTAGAGGAGC...AAGTTCATTTGCAAGCAACTCACAAGCTCTCCAGCTAAATGACCTGTCCCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2
CDS-3UTR CCA 90 bp	CTGAAAGTAACTGCAAGAACAATGGGCAAACCAACTCCTGAAAAGAGCAAGACGGCTCCTCTACGGTATTaGTGGTCTGTTGCTGATCTA	+
Preference number: 4 (lower is better) Translates to: LKVTARTMGKPTPEKSKTAPLRY*WSVADL Trigger: TAGATCAGCAACAGACCACCAATACCGTAGAGGAGC...CGTCTTGCTCTTTTCAGGAGTTGGTTTGCCCATTGTTCTTGCAGTTACTTTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040607.6 ENSMUST00000206947.2

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