Pregenerated sensors for LSM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007050Ensembl transcript IDs: ENSMUST00000007266.14, ENSMUST00000114011.11, ENSMUST00000173004.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTaGCTCTCTTACCCTCCCTTCTCAGCAGAGGAATTATCTCTCATC | + |
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Preference number: 1 (lower is better) Translates to: KRYRLGASPGPFCSS*LSYPPFSAEELSLI Trigger: GATGAGAGATAATTCCTCTGCTGAGAAGGGAGGGTAAGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR CCA 90 bp | AAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTGTTCTGGGTCACCAATaGGGAAGTGAGGGGGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: KRYRLGASPGPFCSSWLSVLGHQ*GSEGEG Trigger: CCCCTCCCCCTCACTTCCCCATTGGTGACCCAGAAC...AGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR CCA 90 bp | GTATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGAAAGGTTCTGGGTCACCAATaGGGAAGTGAGGGGGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: VLHVATEGLRMLLPSPGKVLGHQ*GSEGEG Trigger: CCCCTCCCCCTCACTTCCCCATTGGTGACCCAGAAC...CTTTCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR GCA 90 bp | TACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTTACCCTTGTGTCCACCTCATCTaGTGGCAGCTGCACATAGCG | + |
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Preference number: 2 (lower is better) Translates to: YRLGASPGPFCSSWLSYPCVHLI*WQLHIA Trigger: CGCTATGTGCAGCTGCCAGCAGATGAGGTGGACACA...AGGGTAAGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173004.2 |
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| 3UTR-3UTR CCA 90 bp | TATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGAAAGAGTTCTGGGTCACCAATaGGGAAGTGAGGGGGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: YYMSPRKGLGCCSHLQERVLGHQ*GSEGEG Trigger: CCCCTCCCCCTCACTTCCCCATTGGTGACCCAGAAC...TCTTTCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR CCA 90 bp | GGAAAGATGAGAAAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTGTCCACCTCATCTGCTaGCAGCTGCACATAGCGGAC | + |
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Preference number: 2 (lower is better) Translates to: GKMRKRYRLGASPGPFCSVHLIC*QLHIAD Trigger: GTCCGCTATGTGCAGCTGCCAGCAGATGAGGTGGAC...ACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTTTCTCATCTTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173004.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCCCGATGCGGGACAGATCTTTCCATCCCTCAAATGTATTACATGTCGCCACCCATTCTGCAGTTCCTaGCTCTCTTACCCTCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: IPDAGQIFPSLKCITCRHPFCSS*LSYPPF Trigger: GAAGGGAGGGTAAGAGAGCCAGGAACTGCAGAATGG...GTGGCGACATGTAATACATTTGAGGGATGGAAAGATCTGTCCCGCATCGGGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR TCA 90 bp | AATGTATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGACATCTCCAGGAAAGATaGGAAAAAGGTACAGACTGG | + |
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Preference number: 2 (lower is better) Translates to: NVLHVATEGLRMLLPSPGHLQER*EKGTDW Trigger: CCAGTCTGTACCTTTTTCTCATCTTTCCTGGAGATG...TCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATACATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR TCA 90 bp | GAAAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTTTGACTGATAACATGTaGGGGTATTTCTCAGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: EKGTDWEPVQDHSAVPGSLTDNM*GYFSGS Trigger: AGACCCTGAGAAATACCCTCACATGTTATCAGTCAA...AGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173004.2 |
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| 3UTR-3UTR GCA 90 bp | AAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTAAGTTTTATTCCCGATaGGGGACAGATCTTTCCATC | + |
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Preference number: 2 (lower is better) Translates to: KRYRLGASPGPFCSSWLSKFYSR*GTDLSI Trigger: GATGGAAAGATCTGTCCCGCATCGGGAATAAAACTT...AGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR GCA 90 bp | GAAAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTAAGTTTTATTCCCGATaGGGGACAGATCTTTCCATC | + |
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Preference number: 2 (lower is better) Translates to: EKGTDWEPVQDHSAVPGSKFYSR*GTDLSI Trigger: GATGGAAAGATCTGTCCCGCATCGGGAATAAAACTT...AGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR-3UTR CCA 90 bp | TGCATCATAAGTTTTATTCCCGATGCGGGACAGATCTTTCCATCCCTCAAATGTCCATTCTGCAGTTCCTaGCTCTCTTACCCTCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: CIISFIPDAGQIFPSLKCPFCSS*LSYPPF Trigger: GAAGGGAGGGTAAGAGAGCCAGGAACTGCAGAATGG...ACATTTGAGGGATGGAAAGATCTGTCCCGCATCGGGAATAAAACTTATGATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR CCA 72 bp | AGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTaGCTCTCTTACCCTCCCTTCTCAGCAGAGGAATTA | + |
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Preference number: 3 (lower is better) Translates to: RLGASPGPFCSS*LSYPPFSAEEL Trigger: TAATTCCTCTGCTGAGAAGGGAGGGTAAGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| 3UTR TCA 72 bp | AAGGGCTTAGGATGCTGCTCCCATCTCCAGGAAAGATaGGAAAAAGGTACAGACTGGGAGCCAGTCCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: KGLGCCSHLQER*EKGTDWEPVQD Trigger: GTCCTGGACTGGCTCCCAGTCTGTACCTTTTTCTCATCTTTCCTGGAGATGGGAGCAGCATCCTAAGCCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| CDS-3UTR TCA 90 bp | ACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTTACCCTCGGGTTCCACAGATGCTaGGGCCTGCAGGCAGCATCT | + |
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Preference number: 4 (lower is better) Translates to: TDWEPVQDHSAVPGSLTLGFHRC*GLQAAS Trigger: AGATGCTGCCTGCAGGCCTCAGCATCTGTGGAACCC...GAGGGTAAGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173004.2 |
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| CDS-3UTR GCA 90 bp | AAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTTGTGTCCACCTCATCTaGTGGCAGCTGCACATAGCG | + |
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Preference number: 4 (lower is better) Translates to: KRYRLGASPGPFCSSWLSCVHLI*WQLHIA Trigger: CGCTATGTGCAGCTGCCAGCAGATGAGGTGGACACA...AGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| CDS-3UTR CCA 90 bp | AATGTATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGAGTCCACCTCATCTGCTaGCAGCTGCACATAGCGGAC | + |
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Preference number: 4 (lower is better) Translates to: NVLHVATEGLRMLLPSPGVHLIC*QLHIAD Trigger: GTCCGCTATGTGCAGCTGCCAGCAGATGAGGTGGAC...TCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATACATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| CDS-3UTR CCA 90 bp | TATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGAAAGAGTCCACCTCATCTGCTaGCAGCTGCACATAGCGGAC | + |
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Preference number: 4 (lower is better) Translates to: YYMSPRKGLGCCSHLQERVHLIC*QLHIAD Trigger: GTCCGCTATGTGCAGCTGCCAGCAGATGAGGTGGAC...TCTTTCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| CDS-3UTR GCA 90 bp | TATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGAAAGATCAACAGCACAGAAGTaGAAGGCTCGCTTCCCGTTC | + |
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Preference number: 4 (lower is better) Translates to: YYMSPRKGLGCCSHLQERSTAQK*KARFPF Trigger: GAACGGGAAGCGAGCCTTGCACTTCTGTGCTGTTGA...TCTTTCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000173004.2 |
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| CDS-3UTR GCA 90 bp | CCGATGCGGGACAGATCTTTCCATCCCTCAAATGTATTACATGTCGCCACGGAATCAACAGCACAGAAGTaGAAGGCTCGCTTCCCGTTC | + |
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Preference number: 4 (lower is better) Translates to: PMRDRSFHPSNVLHVATESTAQK*KARFPF Trigger: GAACGGGAAGCGAGCCTTGCACTTCTGTGCTGTTGA...TTCCGTGGCGACATGTAATACATTTGAGGGATGGAAAGATCTGTCCCGCATCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000173004.2 |
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| CDS-3UTR TCA 90 bp | AAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTTTGACTGATAACATGTaGGGGTATTTCTCAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: KRYRLGASPGPFCSSWLSLTDNM*GYFSGS Trigger: AGACCCTGAGAAATACCCTCACATGTTATCAGTCAA...AGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| CDS-3UTR TCA 90 bp | TCCTGGCTCTCTTACCCTCCCTTCTCAGCAGAGGAATTATCTCTCATCCATTCATGCAGGCAGCATCTGTaGGTTCTCAGGTCATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: SWLSYPPFSAEELSLIHSCRQHL*VLRSFL Trigger: CAAGAATGACCTGAGAACTCACAGATGCTGCCTGCA...TGAATGGATGAGAGATAATTCCTCTGCTGAGAAGGGAGGGTAAGAGAGCCAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173004.2 |
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| CDS-3UTR GCA 90 bp | AGTTTTATTCCCGATGCGGGACAGATCTTTCCATCCCTCAAATGTATTACATGTTGTGTCCACCTCATCTaGTGGCAGCTGCACATAGCG | + |
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Preference number: 4 (lower is better) Translates to: SFIPDAGQIFPSLKCITCCVHLI*WQLHIA Trigger: CGCTATGTGCAGCTGCCAGCAGATGAGGTGGACACA...ACATGTAATACATTTGAGGGATGGAAAGATCTGTCCCGCATCGGGAATAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| 3UTR CAA 72 bp | AACAAAACACACCTTAAGTATTGGGCAGGGGTGTTCTaGTCCTCAGTAGGACGTCAAGTTCTGGGTCACCAA | + |
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Preference number: 4 (lower is better) Translates to: NKTHLKYWAGVF*SSVGRQVLGHQ Trigger: TTGGTGACCCAGAACTTGACGTCCTACTGAGGACAAGAACACCCCTGCCCAATACTTAAGGTGTGTTTTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 ENSMUST00000173004.2 |
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| CDS-3UTR CAA 90 bp | ACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTTACCCTCTCGGTTAGTTTGATATaGAGGTACTGGTCCACAGAG | + |
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Preference number: 5 (lower is better) Translates to: TDWEPVQDHSAVPGSLTLSVSLI*RYWSTE Trigger: CTCTGTGGACCAGTACCTCAATATCAAACTAACCGA...GAGGGTAAGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| CDS-3UTR CAA 90 bp | AATGTATTACATGTCGCCACGGAAGGGCTTAGGATGCTGCTCCCATCTCCAGGAGGCTTTCTCTTGGACTaGCTAAAGGTTTCCCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: NVLHVATEGLRMLLPSPGGFLLD*LKVSPK Trigger: TTTGGGGGAAACCTTTAGCAAGTCCAAGAGAAAGCC...TCCTGGAGATGGGAGCAGCATCCTAAGCCCTTCCGTGGCGACATGTAATACATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000173004.2 |
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| CDS-3UTR CAA 90 bp | AAAAGGTACAGACTGGGAGCCAGTCCAGGACCATTCTGCAGTTCCTGGCTCTCTTCGGTTAGTTTGATATaGAGGTACTGGTCCACAGAG | + |
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Preference number: 5 (lower is better) Translates to: KRYRLGASPGPFCSSWLSSVSLI*RYWSTE Trigger: CTCTGTGGACCAGTACCTCAATATCAAACTAACCGA...AGAGAGCCAGGAACTGCAGAATGGTCCTGGACTGGCTCCCAGTCTGTACCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000114011.11 |
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| CDS-3UTR CAA 90 bp | TTTATTCCCGATGCGGGACAGATCTTTCCATCCCTCAAATGTATTACATGTCGCGGCTTTCTCTTGGACTaGCTAAAGGTTTCCCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: FIPDAGQIFPSLKCITCRGFLLD*LKVSPK Trigger: TTTGGGGGAAACCTTTAGCAAGTCCAAGAGAAAGCC...GCGACATGTAATACATTTGAGGGATGGAAAGATCTGTCCCGCATCGGGAATAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000173004.2 |
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| CDS GCA 72 bp | AAGAGCCTCACAAAGTCCTCGTCAACAGCACAGAAGTaGAAGGCTCGCTTCCCGTTCTCCCCCGGCGCCCGT | + |
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Preference number: 6 (lower is better) Translates to: KSLTKSSSTAQK*KARFPFSPGAR Trigger: ACGGGCGCCGGGGGAGAACGGGAAGCGAGCCTTGCACTTCTGTGCTGTTGACGAGGACTTTGTGAGGCTCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000007266.14 ENSMUST00000173004.2 |
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