Pregenerated sensors for LSM14A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066568Ensembl transcript IDs: ENSMUST00000085585.12, ENSMUST00000133046.3, ENSMUST00000155256.8, ENSMUST00000205519.2, ENSMUST00000206388.2, ENSMUST00000206830.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGCAAGGGGAAAGACCCACCCATATCCCTGCTCCTCAGCACACTaGCTTCTGCAAGGACACGTATGTTTGCTGACTTTAAAACGTTTA | + |
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Preference number: 1 (lower is better) Translates to: KARGKTHPYPCSSAH*LLQGHVCLLTLKRL Trigger: TAAACGTTTTAAAGTCAGCAAACATACGTGTCCTTGCAGAAGTCAGTGTGCTGAGGAGCAGGGATATGGGTGGGTCTTTCCCCTTGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAACCCTCGAGGGGCAGTaGAGGTTCCTCCTCGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSTLEGQ*RFLLGH Trigger: GTGGCCGAGGAGGAACCTTCACTGCCCCTCGAGGGT...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR TCA 90 bp | CCACGTCCTCTTCTTGGAGCAGAAGGAACTCCAGGAACTACTTGCCTCTTGTCAAAAACCCAGTGCTGGTaGCAGGCAAGACAGCAACTT | + |
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Preference number: 2 (lower is better) Translates to: PRPLLGAEGTPGTTCLLSKTQCW*QARQQL Trigger: AAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTT...TGACAAGAGGCAAGTAGTTCCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCACCCACGTCCTCTTCTTaGAGCAGAAGGAACTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSPTSSS*SRRNSR Trigger: CCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGGG...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGCAGCACACTGACTTCTaGAAGGACACGTATGTTTGC | + |
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Preference number: 2 (lower is better) Translates to: NRSQRLPQQNSRHSRRNGQHTDF*KDTYVC Trigger: GCAAACATACGTGTCCTTGCAGAAGTCAGTGTGCTG...CCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR GCA 90 bp | CCACGTCCTCTTCTTGGAGCAGAAGGAACTCCAGGAACTACTTGCCTCTTGTCATGTATGCTGGCATCCTaGCAAAAGGTCCATAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: PRPLLGAEGTPGTTCLLSCMLAS*QKVHRN Trigger: GTTCCTATGGACCTTTTGGCAGGATGCCAGCATACA...TGACAAGAGGCAAGTAGTTCCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR GCA 90 bp | CCACGTCCTCTTCTTGGAGCAGAAGGAACTCCAGGAACTACTTGCCTCTTGTCAACTGAACTGACTGTATaGTGGCATCCTGCCAAAAGG | + |
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Preference number: 2 (lower is better) Translates to: PRPLLGAEGTPGTTCLLSTELTV*WHPAKR Trigger: CCTTTTGGCAGGATGCCAGCATACAGTCAGTTCAGT...TGACAAGAGGCAAGTAGTTCCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR GCA 90 bp | CCACGTCCTCTTCTTGGAGCAGAAGGAACTCCAGGAACTACTTGCCTCTTGTCACTCTTGGTTGTCTATTaGTTTCTGGCTGGTAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: PRPLLGAEGTPGTTCLLSLLVVY*FLAGRW Trigger: CCACCTACCAGCCAGAAAGCAATAGACAACCAAGAG...TGACAAGAGGCAAGTAGTTCCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCACACTTTCCAGGACCATaGAGAGCTAGGAGTCACCTA | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSHFPGP*RARSHL Trigger: TAGGTGACTCCTAGCTCTTCATGGTCCTGGAAAGTG...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000085585.12 ENSMUST00000206388.2 ENSMUST00000206830.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAGTACTTGGACTGAACTaGCTGTATGCTGGCATCCTG | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSVLGLN*LYAGIL Trigger: CAGGATGCCAGCATACAGTCAGTTCAGTCCAAGTAC...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR GCA 90 bp | AAAACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGCAGCACACTGACTTCTaGAAGGACACGTATGTTTGC | + |
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Preference number: 2 (lower is better) Translates to: KTGVSGYHNRIPGIAGGMQHTDF*KDTYVC Trigger: GCAAACATACGTGTCCTTGCAGAAGTCAGTGTGCTG...CATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR CCA 90 bp | CCACGTCCTCTTCTTGGAGCAGAAGGAACTCCAGGAACTACTTGCCTCTTGTCACCAACTGCATTGCTCTaGGATAAGGTACCACTATTT | + |
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Preference number: 2 (lower is better) Translates to: PRPLLGAEGTPGTTCLLSPTALL*DKVPLF Trigger: AAATAGTGGTACCTTATCCCAGAGCAATGCAGTTGG...TGACAAGAGGCAAGTAGTTCCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGAAATCAAAAACCTTAAGCCTGGAAAGCAAGGGGAAAGACCCACCCATATCCACTTTCCAGGACCATaGAGAGCTAGGAGTCACCTA | + |
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Preference number: 2 (lower is better) Translates to: KEIKNLKPGKQGERPTHIHFPGP*RARSHL Trigger: TAGGTGACTCCTAGCTCTTCATGGTCCTGGAAAGTG...GATATGGGTGGGTCTTTCCCCTTGCTTTCCAGGCTTAAGGTTTTTGATTTCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCACCTATATTCAAAGTCTaGAAACTCCCTACCACCACG | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSPIFKV*KLPTTT Trigger: CGTGGTGGTAGGGAGTTTGCAGACTTTGAATATAGG...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR GCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAACTCCAGGAACTACTTaGCTCTTGTCATTTCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSTPGTT*LLSFLS Trigger: ACTCAGAAATGACAAGAGGCAAGTAGTTCCTGGAGT...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGACAAATCCTGTGATTTaGTACAAAACGAAGTCCATA | + |
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Preference number: 2 (lower is better) Translates to: NRSQRLPQQNSRHSRRNGTNPVI*YKTKSI Trigger: TATGGACTTCGTTTTGTAGCAAATCACAGGATTTGT...CCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCATTCTTCAGCCCAAGTTaGTCTCCTTTCTCTATTATC | + |
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Preference number: 2 (lower is better) Translates to: EAENRQNPVLVTGKTATSFFSPS*SPFSII Trigger: GATAATAGAGAAAGGAGACCAACTTGGGCTGAAGAA...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR TCA 90 bp | TCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTCACTTTCCAGGACCATaGAGAGCTAGGAGTCACCTA | + |
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Preference number: 2 (lower is better) Translates to: SKQGITTICYSTYTYTCVHFPGP*RARSHL Trigger: TAGGTGACTCCTAGCTCTTCATGGTCCTGGAAAGTG...AACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR TCA 90 bp | TTCAACTCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTAAAACCCAGTGCTGGTaGCAGGCAAGACAGCAACTT | + |
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Preference number: 2 (lower is better) Translates to: FNSKQGITTICYSTYTYTKTQCW*QARQQL Trigger: AAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTT...AGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGAGTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAGGTCTAACTGAGGGCTaGATCGACCTTGGGCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: EAENRQNPVLVTGKTATSGLTEG*IDLGLA Trigger: AGCTAGCCCAAGGTCGATCAAGCCCTCAGTTAGACC...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAGCCGAACCAACTGCATaGCTCTGGGATAAGGTACCA | + |
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Preference number: 3 (lower is better) Translates to: EAENRQNPVLVTGKTATSAEPTA*LWDKVP Trigger: TGGTACCTTATCCCAGAGCAATGCAGTTGGTTCGGC...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR TCA 72 bp | GGAAAGACCCACCCATATCCCTGCTCCTCAGCACACTaGCTTCTGCAAGGACACGTATGTTTGCTGACTTTA | + |
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Preference number: 3 (lower is better) Translates to: GKTHPYPCSSAH*LLQGHVCLLTL Trigger: TAAAGTCAGCAAACATACGTGTCCTTGCAGAAGTCAGTGTGCTGAGGAGCAGGGATATGGGTGGGTCTTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR TCA 72 bp | GGGCTAGCTGTGGTTTTACAGATCTTGTGTCTTGTGTaGAGGCCGAACCAACTGCATTGCTCTGGGATAAGG | + |
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Preference number: 3 (lower is better) Translates to: GLAVVLQILCLV*RPNQLHCSGIR Trigger: CCTTATCCCAGAGCAATGCAGTTGGTTCGGCCTTCACACAAGACACAAGATCTGTAAAACCACAGCTAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR CAA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAAGCTCGCCTGTGCTCTaGGTTGTCTATTGCTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: EAENRQNPVLVTGKTATSSSPVL*VVYCFL Trigger: CAGAAAGCAATAGACAACCAAGAGCACAGGCGAGCT...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTCAAGGACACGTATGTTaGCTGACTTTAAAACGTTTA | + |
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Preference number: 3 (lower is better) Translates to: TGVSGYHNRIPGIAGGMGQGHVC*LTLKRL Trigger: TAAACGTTTTAAAGTCAGCAAACATACGTGTCCTTG...ACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR CAA 90 bp | ACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTAACAAATCCTGTGATTaGCTACAAAACGAAGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: TGVSGYHNRIPGIAGGMGNKSCD*LQNEVH Trigger: ATGGACTTCGTTTTGTAGCAAATCACAGGATTTGTT...ACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| 3UTR-3UTR CAA 90 bp | AAAACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGTATGCAGCAACTTTGTaGTCTTTCTTTCAGAAAGCA | + |
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Preference number: 3 (lower is better) Translates to: KTGVSGYHNRIPGIAGGMYAATL*SFFQKA Trigger: TGCTTTCTGAAAGAAAGACAACAAAGTTGCTGCATA...CATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| 3UTR-3UTR CAA 90 bp | AGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTCAACTGATACAAGGACACGTATGTTaGCTGACTTTAAAACGTTTA | + |
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Preference number: 3 (lower is better) Translates to: SGYHNRIPGIAGGMGQLIQGHVC*LTLKRL Trigger: TAAACGTTTTAAAGTCAGCAAACATACGTGTCCTTG...TATCAGTTGACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS-3UTR CCA 90 bp | AAAACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGCGAAGGATCGAACTTTaGCGAGGGCTACCGTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: KTGVSGYHNRIPGIAGGMRRIEL*RGLPWS Trigger: ACTCCACGGTAGCCCTCGCCAAAGTTCGATCCTTCG...CATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR TCA 90 bp | CCACGTCCTCTTCTTGGAGCAGAAGGAACTCCAGGAACTACTTGCCTCTTGTCATCGAAAGGGGCACAGTaGATCAAATTGTTCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PRPLLGAEGTPGTTCLLSSKGAQ*IKLFPA Trigger: AGCTGGGAACAATTTGATTCACTGTGCCCCTTTCGA...TGACAAGAGGCAAGTAGTTCCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| CDS-3UTR TCA 90 bp | TTCAACTCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTACCCTCGAGGGGCAGTaGAGGTTCCTCCTCGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: FNSKQGITTICYSTYTYTTLEGQ*RFLLGH Trigger: GTGGCCGAGGAGGAACCTTCACTGCCCCTCGAGGGT...AGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGAGTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS-3UTR TCA 90 bp | ACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTTTAAGACCCTCGAGGGGCAGTaGAGGTTCCTCCTCGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TRNHNHLLLHIHLYLCFKTLEGQ*RFLLGH Trigger: GTGGCCGAGGAGGAACCTTCACTGCCCCTCGAGGGT...CTTAAAACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS-3UTR CCA 90 bp | AAAACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGCTCGCCTGTGCTCTTaGTTGTCTATTGCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: KTGVSGYHNRIPGIAGGMARLCS*LSIAFW Trigger: CCAGAAAGCAATAGACAACCAAGAGCACAGGCGAGC...CATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR GCA 90 bp | ACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTACTCCAGGAACTACTTaGCTCTTGTCATTTCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: TGVSGYHNRIPGIAGGMGTPGTT*LLSFLS Trigger: ACTCAGAAATGACAAGAGGCAAGTAGTTCCTGGAGT...ACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCAACATTGTGGTTTGGGTaGCTCACAAACAGTGAGGTC | + |
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Preference number: 4 (lower is better) Translates to: EAENRQNPVLVTGKTATSTLWFG*LTNSEV Trigger: GACCTCACTGTTTGTGAGCCACCCAAACCACAATGT...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206388.2 |
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| CDS-3UTR TCA 90 bp | TTAGGGTCCAAAAGCCGTGGTTTTCCTATATTCAAAGTCTGCAAACTCCCTACCGTACTTGGACTGAACTaGCTGTATGCTGGCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: LGSKSRGFPIFKVCKLPTVLGLN*LYAGIL Trigger: CAGGATGCCAGCATACAGTCAGTTCAGTCCAAGTAC...GGTAGGGAGTTTGCAGACTTTGAATATAGGAAAACCACGGCTTTTGGACCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAAAAGCCGTGGTTTTCCTATATTCAAAGTCTGCAAACTCCCTACCACACTGAACTGACTGTATaGTGGCATCCTGCCAAAAGG | + |
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Preference number: 4 (lower is better) Translates to: RVQKPWFSYIQSLQTPYHTELTV*WHPAKR Trigger: CCTTTTGGCAGGATGCCAGCATACAGTCAGTTCAGT...GTGGTAGGGAGTTTGCAGACTTTGAATATAGGAAAACCACGGCTTTTGGACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR GCA 90 bp | TCAGAAAGCAGTATGACCAATCCAGACCTTTTAGGGTCCAAAAGCCGTGGTTTTCCGAACCAACTGCATTaGTCTGGGATAAGGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: SESSMTNPDLLGSKSRGFPNQLH*SGIRYH Trigger: GTGGTACCTTATCCCAGAGCAATGCAGTTGGTTCGG...AAAACCACGGCTTTTGGACCCTAAAAGGTCTGGATTGGTCATACTGCTTTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR GCA 90 bp | AGGGTCCAAAAGCCGTGGTTTTCCTATATTCAAAGTCTGCAAACTCCCTACCACCTCTTGGTTGTCTATTaGTTTCTGGCTGGTAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RVQKPWFSYIQSLQTPYHLLVVY*FLAGRW Trigger: CCACCTACCAGCCAGAAAGCAATAGACAACCAAGAG...GTGGTAGGGAGTTTGCAGACTTTGAATATAGGAAAACCACGGCTTTTGGACCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR CCA 90 bp | TCAGAAAGCAGTATGACCAATCCAGACCTTTTAGGGTCCAAAAGCCGTGGTTTTGCTCGCCTGTGCTCTTaGTTGTCTATTGCTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SESSMTNPDLLGSKSRGFARLCS*LSIAFW Trigger: CCAGAAAGCAATAGACAACCAAGAGCACAGGCGAGC...AAAACCACGGCTTTTGGACCCTAAAAGGTCTGGATTGGTCATACTGCTTTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR CCA 90 bp | AACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGAGGGTCCAAAAGCCGTaGTTTTCCTATATTCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: NRSQRLPQQNSRHSRRNGRVQKP*FSYIQS Trigger: ACTTTGAATATAGGAAAACCACGGCTTTTGGACCCT...CCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR GCA 90 bp | AAGGAAATCAAAAACCTTAAGCCTGGAAAGCAAGGGGAAAGACCCACCCATATCTGTATGCTGGCATCCTaGCAAAAGGTCCATAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: KEIKNLKPGKQGERPTHICMLAS*QKVHRN Trigger: GTTCCTATGGACCTTTTGGCAGGATGCCAGCATACA...GATATGGGTGGGTCTTTCCCCTTGCTTTCCAGGCTTAAGGTTTTTGATTTCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR GCA 90 bp | AAGGAAATCAAAAACCTTAAGCCTGGAAAGCAAGGGGAAAGACCCACCCATATCCTCTTGGTTGTCTATTaGTTTCTGGCTGGTAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: KEIKNLKPGKQGERPTHILLVVY*FLAGRW Trigger: CCACCTACCAGCCAGAAAGCAATAGACAACCAAGAG...GATATGGGTGGGTCTTTCCCCTTGCTTTCCAGGCTTAAGGTTTTTGATTTCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CCA 90 bp | GAAGCAGAAAACAGACAAAACCCAGTGCTGGTGACAGGCAAGACAGCAACTTCATATTGGACGATCTGTTaGTCTGTCTTCTGTACCGAA | + |
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Preference number: 4 (lower is better) Translates to: EAENRQNPVLVTGKTATSYWTIC*SVFCTE Trigger: TTCGGTACAGAAGACAGACCAACAGATCGTCCAATA...TGAAGTTGCTGTCTTGCCTGTCACCAGCACTGGGTTTTGTCTGTTTTCTGCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206388.2 |
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| CDS-3UTR CCA 90 bp | TCAGAAAGCAGTATGACCAATCCAGACCTTTTAGGGTCCAAAAGCCGTGGTTTTTTGTCTATTGCTTTCTaGCTGGTAGGTGGCAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SESSMTNPDLLGSKSRGFLSIAF*LVGGKG Trigger: GCCTTTGCCACCTACCAGCCAGAAAGCAATAGACAA...AAAACCACGGCTTTTGGACCCTAAAAGGTCTGGATTGGTCATACTGCTTTCTGA 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR CCA 90 bp | ACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTTTAAGCCCACGTCCTCTTCTTaGAGCAGAAGGAACTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: TRNHNHLLLHIHLYLCFKPTSSS*SRRNSR Trigger: CCTGGAGTTCCTTCTGCTCCAAGAAGAGGACGTGGG...CTTAAAACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CCA 90 bp | AAGGAAATCAAAAACCTTAAGCCTGGAAAGCAAGGGGAAAGACCCACCCATATCTATTGGACGATCTGTTaGTCTGTCTTCTGTACCGAA | + |
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Preference number: 4 (lower is better) Translates to: KEIKNLKPGKQGERPTHIYWTIC*SVFCTE Trigger: TTCGGTACAGAAGACAGACCAACAGATCGTCCAATA...GATATGGGTGGGTCTTTCCCCTTGCTTTCCAGGCTTAAGGTTTTTGATTTCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR TCA 90 bp | TCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTGTACTTGGACTGAACTaGCTGTATGCTGGCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: SKQGITTICYSTYTYTCVVLGLN*LYAGIL Trigger: CAGGATGCCAGCATACAGTCAGTTCAGTCCAAGTAC...AACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR GCA 90 bp | ACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTTTAAGCCGAACCAACTGCATTaGTCTGGGATAAGGTACCAC | + |
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Preference number: 4 (lower is better) Translates to: TRNHNHLLLHIHLYLCFKPNQLH*SGIRYH Trigger: GTGGTACCTTATCCCAGAGCAATGCAGTTGGTTCGG...CTTAAAACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR GCA 90 bp | TTCAACTCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTACTGAACTGACTGTATaGTGGCATCCTGCCAAAAGG | + |
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Preference number: 4 (lower is better) Translates to: FNSKQGITTICYSTYTYTTELTV*WHPAKR Trigger: CCTTTTGGCAGGATGCCAGCATACAGTCAGTTCAGT...AGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGAGTTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CCA 90 bp | TCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTTTGTCTATTGCTTTCTaGCTGGTAGGTGGCAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: SKQGITTICYSTYTYTCVLSIAF*LVGGKG Trigger: GCCTTTGCCACCTACCAGCCAGAAAGCAATAGACAA...AACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR GCA 90 bp | TCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTCCTATATTCAAAGTCTaGAAACTCCCTACCACCACG | + |
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Preference number: 4 (lower is better) Translates to: SKQGITTICYSTYTYTCVPIFKV*KLPTTT Trigger: CGTGGTGGTAGGGAGTTTGCAGACTTTGAATATAGG...AACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS-3UTR GCA 90 bp | TTCAACTCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTCCTATATTCAAAGTCTaGAAACTCCCTACCACCACG | + |
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Preference number: 4 (lower is better) Translates to: FNSKQGITTICYSTYTYTPIFKV*KLPTTT Trigger: CGTGGTGGTAGGGAGTTTGCAGACTTTGAATATAGG...AGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGAGTTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS-3UTR CCA 90 bp | ACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTTTAAGCCAACTGCATTGCTCTaGGATAAGGTACCACTATTT | + |
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Preference number: 4 (lower is better) Translates to: TRNHNHLLLHIHLYLCFKPTALL*DKVPLF Trigger: AAATAGTGGTACCTTATCCCAGAGCAATGCAGTTGG...CTTAAAACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CAA 90 bp | ACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTCTCCACGGCCACGGTTaGGACGAAGCGGGATGCCAA | + |
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Preference number: 5 (lower is better) Translates to: TGVSGYHNRIPGIAGGMGLHGHG*DEAGCQ Trigger: TTGGCATCCCGCTTCGTCCAAACCGTGGCCGTGGAG...ACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS-3UTR CAA 90 bp | AAAACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGCATCTCGAGGCGGTATaGGACGATCTGTTGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: KTGVSGYHNRIPGIAGGMHLEAV*DDLLVC Trigger: ACAGACCAACAGATCGTCCAATACCGCCTCGAGATG...CATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CAA 90 bp | TGGGCTAGCTGTGGTTTTACAGATCTTGTGTCTTGTGTGAAGGCCGAACCAACTCATCTCGAGGCGGTATaGGACGATCTGTTGGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: WASCGFTDLVSCVKAEPTHLEAV*DDLLVC Trigger: ACAGACCAACAGATCGTCCAATACCGCCTCGAGATG...AGTTGGTTCGGCCTTCACACAAGACACAAGATCTGTAAAACCACAGCTAGCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| CDS-3UTR CAA 90 bp | AGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTCAACTGATAGCCGAACCAACTGCATaGCTCTGGGATAAGGTACCA | + |
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Preference number: 5 (lower is better) Translates to: SGYHNRIPGIAGGMGQLIAEPTA*LWDKVP Trigger: TGGTACCTTATCCCAGAGCAATGCAGTTGGTTCGGC...TATCAGTTGACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CAA 90 bp | ACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGGGTTTTCTTCAGCCCAAGTaGGTCTCCTTTCTAGAACCC | + |
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Preference number: 5 (lower is better) Translates to: TGVSGYHNRIPGIAGGMGFLQPK*VSFLEP Trigger: GGGTTCTAGAAAGGAGACCAACTTGGGCTGAAGAAA...ACCCATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206830.2 |
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| CDS-3UTR CAA 90 bp | AAAACAGGAGTCAGCGGTTACCACAACAGAATTCCAGGCATAGCAGGAGGAATGAGCTCGCCTGTGCTCTaGGTTGTCTATTGCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: KTGVSGYHNRIPGIAGGMSSPVL*VVYCFL Trigger: CAGAAAGCAATAGACAACCAAGAGCACAGGCGAGCT...CATTCCTCCTGCTATGCCTGGAATTCTGTTGTGGTAACCGCTGACTCCTGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CAA 90 bp | TTAGGGTCCAAAAGCCGTGGTTTTCCTATATTCAAAGTCTGCAAACTCCCTACCGCCGAACCAACTGCATaGCTCTGGGATAAGGTACCA | + |
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Preference number: 5 (lower is better) Translates to: LGSKSRGFPIFKVCKLPTAEPTA*LWDKVP Trigger: TGGTACCTTATCCCAGAGCAATGCAGTTGGTTCGGC...GGTAGGGAGTTTGCAGACTTTGAATATAGGAAAACCACGGCTTTTGGACCCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS-3UTR CAA 90 bp | TTCAACTCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTCTCCACGGCCACGGTTaGGACGAAGCGGGATGCCAA | + |
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Preference number: 5 (lower is better) Translates to: FNSKQGITTICYSTYTYTLHGHG*DEAGCQ Trigger: TTGGCATCCCGCTTCGTCCAAACCGTGGCCGTGGAG...AGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGAGTTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000206830.2 |
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| CDS CCA 90 bp | CCCGCGGAATATAATATATTCAAAGACTTCATCTCGAGGCGGTATTaGACGATCTGTTGGTCTGTCTTCTGTACCGAAGGATCGAAAGGG | + |
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Preference number: 5 (lower is better) Translates to: PAEYNIFKDFISRRY*TICWSVFCTEGSKG Trigger: CCCTTTCGATCCTTCGGTACAGAAGACAGACCAACAGATCGTCCAATACCGCCTCGAGATGAAGTCTTTGAATATATTATATTCCGCGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206388.2 |
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| CDS-3UTR CAA 90 bp | TTAGGGTCCAAAAGCCGTGGTTTTCCTATATTCAAAGTCTGCAAACTCCCTACCAGCTCGCCTGTGCTCTaGGTTGTCTATTGCTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LGSKSRGFPIFKVCKLPTSSPVL*VVYCFL Trigger: CAGAAAGCAATAGACAACCAAGAGCACAGGCGAGCT...GGTAGGGAGTTTGCAGACTTTGAATATAGGAAAACCACGGCTTTTGGACCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000205519.2 |
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| CDS CCA 90 bp | CCCGCGGAATATAATATATTCAAAGACTTCATCTCGAGGCGGTATTaGACGATCTGTTGGTCTGTCTTCTGTACCGAAGGATCGAACCTT | + |
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Preference number: 5 (lower is better) Translates to: PAEYNIFKDFISRRY*TICWSVFCTEGSNL Trigger: AAGGTTCGATCCTTCGGTACAGAAGACAGACCAACAGATCGTCCAATACCGCCTCGAGATGAAGTCTTTGAATATATTATATTCCGCGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133046.3 |
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| CDS CCA 90 bp | CCCGCGGAATATAATATATTCAAAGACTTCATCTCGAGGCGGTATTaGACGATCTGTTGGTCTGTCTTCTGTACCGAAGGATCGAACTTT | + |
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Preference number: 5 (lower is better) Translates to: PAEYNIFKDFISRRY*TICWSVFCTEGSNF Trigger: AAAGTTCGATCCTTCGGTACAGAAGACAGACCAACAGATCGTCCAATACCGCCTCGAGATGAAGTCTTTGAATATATTATATTCCGCGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085585.12 ENSMUST00000155256.8 |
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| CDS-3UTR CAA 90 bp | TTCAACTCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTGGTCTAACTGAGGGCTaGATCGACCTTGGGCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: FNSKQGITTICYSTYTYTGLTEG*IDLGLA Trigger: AGCTAGCCCAAGGTCGATCAAGCCCTCAGTTAGACC...AGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGAGTTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS-3UTR CAA 90 bp | TCTAAACAAGGAATCACAACCATCTGCTACTCCACATACACTTATACTTGTGTTAACTCCAGGAACTACTaGCCTCTTGTCATTTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SKQGITTICYSTYTYTCVNSRNY*PLVISE Trigger: CTCAGAAATGACAAGAGGCAAGTAGTTCCTGGAGTT...AACACAAGTATAAGTGTATGTGGAGTAGCAGATGGTTGTGATTCCTTGTTTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085585.12 |
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| CDS CCA 72 bp | TATAATATATTCAAAGACTTCATCTCGAGGCGGTATTaGACGATCTGTTGGTCTGTCTTCTGTACCGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: YNIFKDFISRRY*TICWSVFCTEG Trigger: TCCTTCGGTACAGAAGACAGACCAACAGATCGTCCAATACCGCCTCGAGATGAAGTCTTTGAATATATTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000085585.12 ENSMUST00000133046.3 ENSMUST00000155256.8 ENSMUST00000206388.2 |
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