Pregenerated sensors for LSM12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020922Ensembl transcript IDs: ENSMUST00000021297.6, ENSMUST00000107156.9
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGAGGGGCGGCTGACTCCCGGGTGGAGAGTGCTGAGAGTTCGTCTAGTACCGTGGACTGTTCAGAGGACTaGGAAGGGCATGGTGGGCCG | + |
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Preference number: 2 (lower is better) Translates to: GGAADSRVESAESSSSTVDCSED*EGHGGP Trigger: CGGCCCACCATGCCCTTCTCAGTCCTCTGAACAGTC...CACGGTACTAGACGAACTCTCAGCACTCTCCACCCGGGAGTCAGCCGCCCCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR CCA 90 bp | GGAGGGGCGGCTGACTCCCGGGTGGAGAGTGCTGAGAGTTCGTCTAGTACCGTGCACCATCGCTGTGGCTaGATGCTGGAAGAGTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: GGAADSRVESAESSSSTVHHRCG*MLEESS Trigger: GGAGGACTCTTCCAGCATCCAGCCACAGCGATGGTG...CACGGTACTAGACGAACTCTCAGCACTCTCCACCCGGGAGTCAGCCGCCCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | CCGTCTGCACACTGGCTCTGCAGGGCTGCAGGAGATCCTCGCTGTGAACTAAGTGACTGTTCAGAGGACTaGGAAGGGCATGGTGGGCCG | + |
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Preference number: 2 (lower is better) Translates to: PSAHWLCRAAGDPRCELSDCSED*EGHGGP Trigger: CGGCCCACCATGCCCTTCTCAGTCCTCTGAACAGTC...ACTTAGTTCACAGCGAGGATCTCCTGCAGCCCTGCAGAGCCAGTGTGCAGACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR CCA 90 bp | CCGTCTGCACACTGGCTCTGCAGGGCTGCAGGAGATCCTCGCTGTGAACTAAGTCACCATCGCTGTGGCTaGATGCTGGAAGAGTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: PSAHWLCRAAGDPRCELSHHRCG*MLEESS Trigger: GGAGGACTCTTCCAGCATCCAGCCACAGCGATGGTG...ACTTAGTTCACAGCGAGGATCTCCTGCAGCCCTGCAGAGCCAGTGTGCAGACGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | CCCAGGAGACTACCCTGGAGGTGCAGGGGCAACAAGTACCAGTTTCGGCTCTCAGTTCGTCTAGTACCGTaGAGACAAAGGCAGAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: PRRLPWRCRGNKYQFRLSVRLVP*RQRQRE Trigger: CTCCCTCTGCCTTTGTCTTCACGGTACTAGACGAAC...TGAGAGCCGAAACTGGTACTTGTTGCCCCTGCACCTCCAGGGTAGTCTCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | GGAGGGGCGGCTGACTCCCGGGTGGAGAGTGCTGAGAGTTCGTCTAGTACCGTGTGGAGGAGGGCAGAGTaGAAAGGAATTTGCAAAAAT | + |
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Preference number: 2 (lower is better) Translates to: GGAADSRVESAESSSSTVWRRAE*KGICKN Trigger: ATTTTTGCAAATTCCTTTTCACTCTGCCCTCCTCCA...CACGGTACTAGACGAACTCTCAGCACTCTCCACCCGGGAGTCAGCCGCCCCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | CCCAGGAGACTACCCTGGAGGTGCAGGGGCAACAAGTACCAGTTTCGGCTCTCATTGTTTTCAGAGGAATaGGGTGGGAAGAGTGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: PRRLPWRCRGNKYQFRLSLFSEE*GGKSGH Trigger: ATGGCCACTCTTCCCACCTCATTCCTCTGAAAACAA...TGAGAGCCGAAACTGGTACTTGTTGCCCCTGCACCTCCAGGGTAGTCTCCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATAGTTAAAGACATCCCGTCTGCACACTaGCTCTGCAGGGCTGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: EGVLRLGLNGRQVHIVKDIPSAH*LCRAAG Trigger: TCCTGCAGCCCTGCAGAGCCAGTGTGCAGACGGGAT...GTCTTTAACTATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATTTGTTTTCAGAGGAATaGGGTGGGAAGAGTGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: DKGRGSPEAGTEWETGTYLFSEE*GGKSGH Trigger: ATGGCCACTCTTCCCACCTCATTCCTCTGAAAACAA...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR CCA 90 bp | CCCAGGAGACTACCCTGGAGGTGCAGGGGCAACAAGTACCAGTTTCGGCTCTCACTTATAAAATCAGGATaGCAGACACAGACTAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: PRRLPWRCRGNKYQFRLSLIKSG*QTQTRE Trigger: TTCCCTAGTCTGTGTCTGCCATCCTGATTTTATAAG...TGAGAGCCGAAACTGGTACTTGTTGCCCCTGCACCTCCAGGGTAGTCTCCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR GCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATGAGACCTCTTTCTTCTaGTCTGGTCTCAACATCAGA | + |
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Preference number: 2 (lower is better) Translates to: DKGRGSPEAGTEWETGTYETSFF*SGLNIR Trigger: TCTGATGTTGAGACCAGAGCAGAAGAAAGAGGTCTC...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATTGGAGGAGGGCAGAGTaGAAAGGAATTTGCAAAAAT | + |
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Preference number: 2 (lower is better) Translates to: DKGRGSPEAGTEWETGTYWRRAE*KGICKN Trigger: ATTTTTGCAAATTCCTTTTCACTCTGCCCTCCTCCA...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR CCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATCTTATAAAATCAGGATaGCAGACACAGACTAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: DKGRGSPEAGTEWETGTYLIKSG*QTQTRE Trigger: TTCCCTAGTCTGTGTCTGCCATCCTGATTTTATAAG...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR TCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATATGAAAAATTCAAAGTaGGACCTCTTTCTTCTGCTC | + |
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Preference number: 2 (lower is better) Translates to: DKGRGSPEAGTEWETGTYMKNSK*DLFLLL Trigger: GAGCAGAAGAAAGAGGTCTCACTTTGAATTTTTCAT...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATAGTTAAAGACCTCTTTCTTCTGCTCTaGTCTCAACATCAGAATCAC | + |
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Preference number: 2 (lower is better) Translates to: EGVLRLGLNGRQVHIVKDLFLLL*SQHQNH Trigger: GTGATTCTGATGTTGAGACCAGAGCAGAAGAAAGAG...GTCTTTAACTATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| 3UTR CCA 72 bp | CATCAGGACCCTCAAGGCCAAATCCCGTCTGCACACTaGCTCTGCAGGGCTGCAGGAGATCCTCGCTGTGAA | + |
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Preference number: 3 (lower is better) Translates to: HQDPQGQIPSAH*LCRAAGDPRCE Trigger: TTCACAGCGAGGATCTCCTGCAGCCCTGCAGAGCCAGTGTGCAGACGGGATTTGGCCTTGAGGGTCCTGATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| CDS-3UTR CCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATCCGTCCGTGCTTTGCTaGCAAGCTCGCCCTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: DKGRGSPEAGTEWETGTYPSVLC*QARPAA Trigger: GGCTGCAGGGCGAGCTTGCCAGCAAAGCACGGACGG...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107156.9 |
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| CDS-3UTR GCA 90 bp | CAGACTAGGGAAGGAAAGTCACAGGTGGAGGAGGGCAGAGTGAAAAGGAATTTGTCTCCGTCCGTGCTTTaGTGGCAAGCTCGCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QTREGKSQVEEGRVKRNLSPSVL*WQARPA Trigger: TGCAGGGCGAGCTTGCCAGCAAAGCACGGACGGAGA...CAAATTCCTTTTCACTCTGCCCTCCTCCACCTGTGACTTTCCTTCCCTAGTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107156.9 |
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| CDS-3UTR TCA 90 bp | CCCAGGAGACTACCCTGGAGGTGCAGGGGCAACAAGTACCAGTTTCGGCTCTCATCTTTAATGGTCTTGTaGATGGTCTGGAAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: PRRLPWRCRGNKYQFRLSSLMVL*MVWKSC Trigger: ACAGCTCTTCCAGACCATTCACAAGACCATTAAAGA...TGAGAGCCGAAACTGGTACTTGTTGCCCCTGCACCTCCAGGGTAGTCTCCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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| CDS-3UTR TCA 90 bp | GACAAAGGCAGAGGGAGTCCTGAGGCTGGGACTGAATGGGAGACAGGTACATATTCTTTAATGGTCTTGTaGATGGTCTGGAAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: DKGRGSPEAGTEWETGTYSLMVL*MVWKSC Trigger: ACAGCTCTTCCAGACCATTCACAAGACCATTAAAGA...ATATGTACCTGTCTCCCATTCAGTCCCAGCCTCAGGACTCCCTCTGCCTTTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021297.6 ENSMUST00000107156.9 |
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