Pregenerated sensors for LSM10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050188Ensembl transcript IDs: ENSMUST00000055575.8, ENSMUST00000151831.2, ENSMUST00000179323.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTACGAAAGGCCGCTGTGACATGTCTGTTACTGGTGGGGAAGGATaGCCGGGAGTTGGCTCAGAACACCGGAGGTCCCTGAGGTGGTGC | + |
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Preference number: 1 (lower is better) Translates to: PTKGRCDMSVTGGEG*PGVGSEHRRSLRWC Trigger: GCACCACCTCAGGGACCTCCGGTGTTCTGAGCCAACTCCCGGCCATCCTTCCCCACCAGTAACAGACATGTCACAGCGGCCTTTCGTAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR CCA 90 bp | GCCACCAGCAGAAGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTaGAACCCTACGAAAGGCCGCTGTGACATGTCTGTTACTGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: ATSRRNSGSQGVSEN*NPTKGRCDMSVTGG Trigger: CCCACCAGTAACAGACATGTCACAGCGGCCTTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCTTCTGCTGGTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGAAGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTGGAACCCTACGAAACATGTCTGTTACTGGTaGGGAAGGATGGCCGGGAGT | + |
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Preference number: 2 (lower is better) Translates to: SRRNSGSQGVSENWNPTKHVCYW*GRMAGS Trigger: ACTCCCGGCCATCCTTCCCCACCAGTAACAGACATG...TTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCTTCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR-3UTR CCA 90 bp | ATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGCATGTCTGTTACTGGTaGGGAAGGATGGCCGGGAGT | + |
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Preference number: 2 (lower is better) Translates to: IQMIQKRDCHLPQGHQQKHVCYW*GRMAGS Trigger: ACTCCCGGCCATCCTTCCCCACCAGTAACAGACATG...CTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR-3UTR CCA 90 bp | AGATTTGAGATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACGGTGTGTCTGAAAACTaGAACCCTACGAAAGGCCGC | + |
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Preference number: 2 (lower is better) Translates to: RFEIQMIQKRDCHLPQGHGVSEN*NPTKGR Trigger: GCGGCCTTTCGTAGGGTTCCAGTTTTCAGACACACC...GTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTATCTCAAATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR-3UTR TCA 90 bp | GATGGACGGGGTCCAATCAGTGAATGGAGATTTGAGATACAAATGATCCAAAAGGTCCCAGGGTGTGTCTaGAAACTGGAACCCTACGAA | + |
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Preference number: 2 (lower is better) Translates to: DGRGPISEWRFEIQMIQKVPGCV*KLEPYE Trigger: TTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGAC...CTTTTGGATCATTTGTATCTCAAATCTCCATTCACTGATTGGACCCCGTCCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR CCA 72 bp | GGCCGCTGTGACATGTCTGTTACTGGTGGGGAAGGATaGCCGGGAGTTGGCTCAGAACACCGGAGGTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: GRCDMSVTGGEG*PGVGSEHRRSL Trigger: CAGGGACCTCCGGTGTTCTGAGCCAACTCCCGGCCATCCTTCCCCACCAGTAACAGACATGTCACAGCGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| 3UTR CCA 72 bp | AGAAGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTaGAACCCTACGAAAGGCCGCTGTGACATGTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: RRNSGSQGVSEN*NPTKGRCDMSV Trigger: AACAGACATGTCACAGCGGCCTTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR GCA 90 bp | GAAGGATGGCCGGGAGTTGGCTCAGAACACCGGAGGTCCCTGAGGTGGTGCTGGTGGCCTTGGAGGCCCTaGAACAGGATGATCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: EGWPGVGSEHRRSLRWCWWPWRP*NRMIRL Trigger: CAGCCTGATCATCCTGTTGCAGGGCCTCCAAGGCCA...CCAGCACCACCTCAGGGACCTCCGGTGTTCTGAGCCAACTCCCGGCCATCCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | GAAGGATGGCCGGGAGTTGGCTCAGAACACCGGAGGTCCCTGAGGTGGTGCTGGTCCACAGTGGTTATTTaGCCTTGGAGGCCCTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: EGWPGVGSEHRRSLRWCWSTVVI*PWRPCN Trigger: GTTGCAGGGCCTCCAAGGCCAAATAACCACTGTGGA...CCAGCACCACCTCAGGGACCTCCGGTGTTCTGAGCCAACTCCCGGCCATCCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR TCA 90 bp | GAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGGAATTCTGGGTCCCAGGTGCGCACACGGTGGATaGTCTGCAGCTGCTGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: EGLSPTPRPPAEGILGPRCAHGG*SAAAAQ Trigger: TTGAGCAGCAGCTGCAGATCATCCACCGTGTGCGCA...CCTGGGACCCAGAATTCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR TCA 90 bp | TTGTCACCTACCCCAAGGCCACCAGCAGAAGGAATTCTGGGTCCCAGGGTGTGTAGCGGTCGGTATAGGTaGCATTGGCCAGGCGGATAT | + |
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Preference number: 4 (lower is better) Translates to: LSPTPRPPAEGILGPRVCSGRYR*HWPGGY Trigger: ATATCCGCCTGGCCAATGTCACCTATACCGACCGCT...ACACACCCTGGGACCCAGAATTCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | GAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGGAATTCTGGGTCCCAGGGTGGTTATTTGGCCTTaGAGGCCCTGCAACAGGATG | + |
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Preference number: 4 (lower is better) Translates to: EGLSPTPRPPAEGILGPRVVIWP*RPCNRM Trigger: CATCCTGTTGCAGGGCCTCCAAGGCCAAATAACCAC...CCTGGGACCCAGAATTCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR TCA 90 bp | GATTGTCACCTACCCCAAGGCCACCAGCAGAAGGAATTCTGGGTCCCAGGGTGTAACTCTCGACGACCTTaGCCCTTGCCACCAAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: DCHLPQGHQQKEFWVPGCNSRRP*PLPPKL Trigger: CAACTTTGGTGGCAAGGGTCAAGGTCGTCGAGAGTT...ACACCCTGGGACCCAGAATTCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | TTGTCACCTACCCCAAGGCCACCAGCAGAAGGAATTCTGGGTCCCAGGGTGTGTGATGTCCACACCATCTaGGATATGGACGTATCGGAC | + |
|
Preference number: 4 (lower is better) Translates to: LSPTPRPPAEGILGPRVCDVHTI*DMDVSD Trigger: GTCCGATACGTCCATATCCCAGATGGTGTGGACATC...ACACACCCTGGGACCCAGAATTCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | ACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGGACCCGAAGGTCCACAGTaGTTATTTGGCCTTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: TNDPKEGLSPTPRPPAEGPEGPQ*LFGLGG Trigger: GCCTCCAAGGCCAAATAACCACTGTGGACCTTCGGG...TCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR GCA 90 bp | AGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTGGAACCCTACGAAAGGCCGCATGATCTGCAGCTGCTaGTCAATAGTAGCAGTGATG | + |
|
Preference number: 4 (lower is better) Translates to: RNSGSQGVSENWNPTKGRMICSC*SIVAVM Trigger: CATCACTGCTACTATTGAGCAGCAGCTGCAGATCAT...GCGGCCTTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | AGCAGAAGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTGGAACCCTACGAAAGTGGTTATTTGGCCTTaGAGGCCCTGCAACAGGATG | + |
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Preference number: 4 (lower is better) Translates to: SRRNSGSQGVSENWNPTKVVIWP*RPCNRM Trigger: CATCCTGTTGCAGGGCCTCCAAGGCCAAATAACCAC...TTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCTTCTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | AGAAGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTGGAACCCTACGAAAGGCGATGTCCACACCATCTaGGATATGGACGTATCGGAC | + |
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Preference number: 4 (lower is better) Translates to: RRNSGSQGVSENWNPTKGDVHTI*DMDVSD Trigger: GTCCGATACGTCCATATCCCAGATGGTGTGGACATC...GCCTTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | ATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGAAGTTGCGCACACGGTaGATGATCTGCAGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: IQMIQKRDCHLPQGHQQKKLRTR*MICSCC Trigger: GCAGCAGCTGCAGATCATCCACCGTGTGCGCAACTT...CTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | ATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGTCCACAGTGGTTATTTaGCCTTGGAGGCCCTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: IQMIQKRDCHLPQGHQQKSTVVI*PWRPCN Trigger: GTTGCAGGGCCTCCAAGGCCAAATAACCACTGTGGA...CTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR TCA 90 bp | GAATGGAGATTTGAGATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAATGCGCACACGGTGGATaGTCTGCAGCTGCTGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: EWRFEIQMIQKRDCHLPQCAHGG*SAAAAQ Trigger: TTGAGCAGCAGCTGCAGATCATCCACCGTGTGCGCA...TTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTATCTCAAATCTCCATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR GCA 90 bp | AGTGAATGGAGATTTGAGATACAAATGATCCAAAAGAGGGATTGTCACCTACCCTGGCCTTGGAGGCCCTaGAACAGGATGATCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SEWRFEIQMIQKRDCHLPWPWRP*NRMIRL Trigger: CAGCCTGATCATCCTGTTGCAGGGCCTCCAAGGCCA...GGGTAGGTGACAATCCCTCTTTTGGATCATTTGTATCTCAAATCTCCATTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR GCA 90 bp | ATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGACACGGTGGATGATCTaGAGCTGCTGCTCAATAGTA | + |
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Preference number: 4 (lower is better) Translates to: IQMIQKRDCHLPQGHQQKTRWMI*SCCSIV Trigger: TACTATTGAGCAGCAGCTGCAGATCATCCACCGTGT...CTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR TCA 90 bp | AGTGAATGGAGATTTGAGATACAAATGATCCAAAAGAGGGATTGTCACCTACCCAGCGGTCGGTATAGGTaGCATTGGCCAGGCGGATAT | + |
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Preference number: 4 (lower is better) Translates to: SEWRFEIQMIQKRDCHLPSGRYR*HWPGGY Trigger: ATATCCGCCTGGCCAATGTCACCTATACCGACCGCT...GGGTAGGTGACAATCCCTCTTTTGGATCATTTGTATCTCAAATCTCCATTCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CCA 90 bp | GAATGGAGATTTGAGATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAAAGTTGCGCACACGGTaGATGATCTGCAGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EWRFEIQMIQKRDCHLPQKLRTR*MICSCC Trigger: GCAGCAGCTGCAGATCATCCACCGTGTGCGCAACTT...TTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTATCTCAAATCTCCATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR GCA 90 bp | AGATTTGAGATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACATGATCTGCAGCTGCTaGTCAATAGTAGCAGTGATG | + |
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Preference number: 4 (lower is better) Translates to: RFEIQMIQKRDCHLPQGHMICSC*SIVAVM Trigger: CATCACTGCTACTATTGAGCAGCAGCTGCAGATCAT...GTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTATCTCAAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CAA 90 bp | GAAGGATGGCCGGGAGTTGGCTCAGAACACCGGAGGTCCCTGAGGTGGTGCTGGCCCTTGCCACCAAAGTaGCGCACACGGTGGATGATC | + |
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Preference number: 5 (lower is better) Translates to: EGWPGVGSEHRRSLRWCWPLPPK*RTRWMI Trigger: GATCATCCACCGTGTGCGCAACTTTGGTGGCAAGGG...CCAGCACCACCTCAGGGACCTCCGGTGTTCTGAGCCAACTCCCGGCCATCCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS GCA 90 bp | CCCTTGCCACCAAAGTTGCGCACACGGTGGATGATCTGCAGCTGCTaGTCAATAGTAGCAGTGATGTCCACACCATCTGGGATATGGACG | + |
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Preference number: 5 (lower is better) Translates to: PLPPKLRTRWMICSC*SIVAVMSTPSGIWT Trigger: CGTCCATATCCCAGATGGTGTGGACATCACTGCTACTATTGAGCAGCAGCTGCAGATCATCCACCGTGTGCGCAACTTTGGTGGCAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS GCA 90 bp | CTCTCATCCCGAAGGTCCACAGTGGTTATTTGGCCTTGGAGGCCCTaGAACAGGATGATCAGGCTGTTCTCAGAAATAGTTCGCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: LSSRRSTVVIWPWRP*NRMIRLFSEIVRSF Trigger: GAAGGAGCGAACTATTTCTGAGAACAGCCTGATCATCCTGTTGCAGGGCCTCCAAGGCCAAATAACCACTGTGGACCTTCGGGATGAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055575.8 ENSMUST00000151831.2 ENSMUST00000179323.2 |
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| CDS-3UTR CAA 90 bp | ACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGGAATGAAAGCATCCACGTaGTCAATGCGTCCTCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: TNDPKEGLSPTPRPPAEGMKAST*SMRPRA Trigger: GGCCCGAGGACGCATTGACAACGTGGATGCTTTCAT...TCCTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CAA 90 bp | AGCAGAAGGAATTCTGGGTCCCAGGGTGTGTCTGAAAACTGGAACCCTACGAAAATGAAAGCATCCACGTaGTCAATGCGTCCTCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: SRRNSGSQGVSENWNPTKMKAST*SMRPRA Trigger: GGCCCGAGGACGCATTGACAACGTGGATGCTTTCAT...TTTCGTAGGGTTCCAGTTTTCAGACACACCCTGGGACCCAGAATTCCTTCTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS-3UTR CAA 90 bp | ATACAAATGATCCAAAAGAGGGATTGTCACCTACCCCAAGGCCACCAGCAGAAGCCCTTGCCACCAAAGTaGCGCACACGGTGGATGATC | + |
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Preference number: 5 (lower is better) Translates to: IQMIQKRDCHLPQGHQQKPLPPK*RTRWMI Trigger: GATCATCCACCGTGTGCGCAACTTTGGTGGCAAGGG...CTTCTGCTGGTGGCCTTGGGGTAGGTGACAATCCCTCTTTTGGATCATTTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS CCA 90 bp | GATCTGCAGCTGCTGCTCAATAGTAGCAGTGATGTCCACACCATCTaGGATATGGACGTATCGGACGTTACGACCGGTCACAAAAAGGTC | + |
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Preference number: 5 (lower is better) Translates to: DLQLLLNSSSDVHTI*DMDVSDVTTGHKKV Trigger: GACCTTTTTGTGACCGGTCGTAACGTCCGATACGTCCATATCCCAGATGGTGTGGACATCACTGCTACTATTGAGCAGCAGCTGCAGATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS CCA 90 bp | AGCTGCTGCTCAATAGTAGCAGTGATGTCCACACCATCTGGGATATaGACGTATCGGACGTTACGACCGGTCACAAAAAGGTCATCCAAC | + |
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Preference number: 5 (lower is better) Translates to: SCCSIVAVMSTPSGI*TYRTLRPVTKRSSN Trigger: GTTGGATGACCTTTTTGTGACCGGTCGTAACGTCCGATACGTCCATATCCCAGATGGTGTGGACATCACTGCTACTATTGAGCAGCAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS CCA 72 bp | GCCACACTCTCATCCCGAAGGTCCACAGTGGTTATTTaGCCTTGGAGGCCCTGCAACAGGATGATCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ATLSSRRSTVVI*PWRPCNRMIRL Trigger: CAGCCTGATCATCCTGTTGCAGGGCCTCCAAGGCCAAATAACCACTGTGGACCTTCGGGATGAGAGTGTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055575.8 ENSMUST00000151831.2 ENSMUST00000179323.2 |
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| CDS GCA 72 bp | CCAAAGTTGCGCACACGGTGGATGATCTGCAGCTGCTaGTCAATAGTAGCAGTGATGTCCACACCATCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PKLRTRWMICSC*SIVAVMSTPSG Trigger: CCCAGATGGTGTGGACATCACTGCTACTATTGAGCAGCAGCTGCAGATCATCCACCGTGTGCGCAACTTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS GCA 72 bp | CCCTTGCCACCAAAGTTGCGCACACGGTGGATGATCTaGAGCTGCTGCTCAATAGTAGCAGTGATGTCCACA | + |
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Preference number: 6 (lower is better) Translates to: PLPPKLRTRWMI*SCCSIVAVMST Trigger: TGTGGACATCACTGCTACTATTGAGCAGCAGCTGCAGATCATCCACCGTGTGCGCAACTTTGGTGGCAAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS CAA 72 bp | ACATTGGCCAGGCGGATATTCATGAAAGCATCCACGTaGTCAATGCGTCCTCGGGCCACACTCTCATCCCGA | + |
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Preference number: 6 (lower is better) Translates to: TLARRIFMKAST*SMRPRATLSSR Trigger: TCGGGATGAGAGTGTGGCCCGAGGACGCATTGACAACGTGGATGCTTTCATGAATATCCGCCTGGCCAATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055575.8 ENSMUST00000151831.2 ENSMUST00000179323.2 |
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| CDS GCA 72 bp | CCACCAAAGTTGCGCACACGGTGGATGATCTGCAGCTaGTGCTCAATAGTAGCAGTGATGTCCACACCATCT | + |
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Preference number: 6 (lower is better) Translates to: PPKLRTRWMICS*CSIVAVMSTPS Trigger: AGATGGTGTGGACATCACTGCTACTATTGAGCAGCAGCTGCAGATCATCCACCGTGTGCGCAACTTTGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS CCA 72 bp | CTGCTGCTCAATAGTAGCAGTGATGTCCACACCATCTaGGATATGGACGTATCGGACGTTACGACCGGTCAC | + |
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Preference number: 6 (lower is better) Translates to: LLLNSSSDVHTI*DMDVSDVTTGH Trigger: GTGACCGGTCGTAACGTCCGATACGTCCATATCCCAGATGGTGTGGACATCACTGCTACTATTGAGCAGCAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000055575.8 ENSMUST00000179323.2 |
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| CDS GCA 72 bp | CGAAGGTCCACAGTGGTTATTTGGCCTTGGAGGCCCTaGAACAGGATGATCAGGCTGTTCTCAGAAATAGTT | + |
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Preference number: 6 (lower is better) Translates to: RRSTVVIWPWRP*NRMIRLFSEIV Trigger: AACTATTTCTGAGAACAGCCTGATCATCCTGTTGCAGGGCCTCCAAGGCCAAATAACCACTGTGGACCTTCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055575.8 ENSMUST00000151831.2 ENSMUST00000179323.2 |
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