Pregenerated sensors for LSM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037296Ensembl transcript IDs: ENSMUST00000038421.8, ENSMUST00000211168.2, ENSMUST00000211670.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTTTAAGGGTCTGGACCTTCAGCTTCTCTGCCTCCAGTCTGGTCTaGTGTTGCACCCTCTGTTCCTCTAGGATCTCTTCAATAGACACT | + |
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Preference number: 1 (lower is better) Translates to: SLRVWTFSFSASSLV*CCTLCSSRISSIDT Trigger: AGTGTCTATTGAAGAGATCCTAGAGGAACAGAGGGTGCAACAGCAGACCAGACTGGAGGCAGAGAAGCTGAAGGTCCAGACCCTTAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000211168.2 ENSMUST00000211670.2 |
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| 3UTR TCA 90 bp | TGTTGCACCCTCTGTTCCTCTAGGATCTCTTCAATAGACACTTGCTaGAGGGGCGTGTCACTCTCCTTCTCCAGGTCTATTTCTCCTAGT | + |
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Preference number: 1 (lower is better) Translates to: CCTLCSSRISSIDTC*RGVSLSFSRSISPS Trigger: ACTAGGAGAAATAGACCTGGAGAAGGAGAGTGACACGCCCCTTCAGCAAGTGTCTATTGAAGAGATCCTAGAGGAACAGAGGGTGCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211670.2 |
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| 3UTR CCA 90 bp | GTGTTAACTTTTAAGACCACTTCCAGGCTGCTGCATGACCTGGACTaGAAACCTCACACAGCTGAACCTTGCAAAGAACGTAGGTGTCAA | + |
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Preference number: 1 (lower is better) Translates to: VLTFKTTSRLLHDLD*KPHTAEPCKERRCQ Trigger: TTGACACCTACGTTCTTTGCAAGGTTCAGCTGTGTGAGGTTTCCAGTCCAGGTCATGCAGCAGCCTGGAAGTGGTCTTAAAAGTTAACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR TCA 90 bp | ATAAGCCAATTTCTATGCTGTTGCCTCATTGCTCACTCTGTGTACTaGAACACACTGCTTCTAAAGTGTCATCTGTCAGACTTCCTACGC | + |
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Preference number: 1 (lower is better) Translates to: ISQFLCCCLIAHSVY*NTLLLKCHLSDFLR Trigger: GCGTAGGAAGTCTGACAGATGACACTTTAGAAGCAGTGTGTTTCAGTACACAGAGTGAGCAATGAGGCAACAGCATAGAAATTGGCTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 90 bp | ACATTTCAGTGTGCCAATAAGCCAATTTCTATGCTGTTGCCTCATTaGTCACTCTGTGTACTGAAACACACTGCTTCTAAAGTGTCATCT | + |
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Preference number: 1 (lower is better) Translates to: TFQCANKPISMLLPH*SLCVLKHTASKVSS Trigger: AGATGACACTTTAGAAGCAGTGTGTTTCAGTACACAGAGTGAGCAATGAGGCAACAGCATAGAAATTGGCTTATTGGCACACTGAAATGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR GCA 90 bp | CTAGAGCAGTCTCTGAGCAAGGACTCAGTACTCGTCCAGAGTGTCTGCGCGAGGGACCTTCAGCTTCTCTaGCTCCAGTCTGGTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: LEQSLSKDSVLVQSVCARDLQLL*LQSGLL Trigger: CAGCAGACCAGACTGGAGGCAGAGAAGCTGAAGGTC...CCTCGCGCAGACACTCTGGACGAGTACTGAGTCCTTGCTCAGAGACTGCTCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211168.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGTCTCTGAGCAAGGACTCAGTACTCGTCCAGAGTGTCTGCGCGAGGAATGGAGTCTGGTCTGCTGTTaGACCCTCTGTTCCTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: AVSEQGLSTRPECLREEWSLVCC*TLCSSR Trigger: CCTAGAGGAACAGAGGGTGCAACAGCAGACCAGACT...CCATTCCTCGCGCAGACACTCTGGACGAGTACTGAGTCCTTGCTCAGAGACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211168.2 |
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| 3UTR-3UTR GCA 90 bp | GGCCCGACAGTGTTAACTTTTAAGACCACTTCCAGGCTGCTGCATGACCTGGACCCAGGTGACAGCACCTaGTCTCTAGAGCAGTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: GPTVLTFKTTSRLLHDLDPGDST*SLEQSL Trigger: CAGAGACTGCTCTAGAGAGCAGGTGCTGTCACCTGG...GTCCAGGTCATGCAGCAGCCTGGAAGTGGTCTTAAAAGTTAACACTGTCGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR CCA 90 bp | CTAGAGCAGTCTCTGAGCAAGGACTCAGTACTCGTCCAGAGTGTCTGCGCGAGGCGATCTTTAAGGGTCTaGACCTTCAGCTTCTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: LEQSLSKDSVLVQSVCARRSLRV*TFSFSA Trigger: GGCAGAGAAGCTGAAGGTCCAGACCCTTAAAGATCG...CCTCGCGCAGACACTCTGGACGAGTACTGAGTCCTTGCTCAGAGACTGCTCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211168.2 |
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| 3UTR-3UTR CCA 90 bp | CACACAGCTGAACCTTGCAAAGAACGTAGGTGTCAAGGGCAGGAATGTCCCTTTACAGTAAAGCTGGGCTaGTGGAGGTGGAGGCCACCT | + |
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Preference number: 2 (lower is better) Translates to: HTAEPCKERRCQGQECPFTVKLG*WRWRPP Trigger: AGGTGGCCTCCACCTCCACCAGCCCAGCTTTACTGT...AAAGGGACATTCCTGCCCTTGACACCTACGTTCTTTGCAAGGTTCAGCTGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | GGCCCGACAGTGTTAACTTTTAAGACCACTTCCAGGCTGCTGCATGACCTGGACTATGAAATGTCCTCCTaGGGAGCCAGCTATATCCAC | + |
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Preference number: 2 (lower is better) Translates to: GPTVLTFKTTSRLLHDLDYEMSS*GASYIH Trigger: GTGGATATAGCTGGCTCCTCAGGAGGACATTTCATA...GTCCAGGTCATGCAGCAGCCTGGAAGTGGTCTTAAAAGTTAACACTGTCGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR GCA 90 bp | TGGTCAGAGCACTGCCTCTCAGTACGAACACAGGGAAGGGCAGCAGAAGCAGGCATAAGCCAATTTCTATaGTGTTGCCTCATTGCTCAC | + |
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Preference number: 2 (lower is better) Translates to: WSEHCLSVRTQGRAAEAGISQFL*CCLIAH Trigger: GTGAGCAATGAGGCAACAGCATAGAAATTGGCTTAT...GCCTGCTTCTGCTGCCCTTCCCTGTGTTCGTACTGAGAGGCAGTGCTCTGACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | CTAAGTGACCTACGCAGAGCTCAATTAACCAGTCACTCTGCTGTCCCTGAACTAACTCTGGTCAATGTGTaGGGTGACCAGGTGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: LSDLRRAQLTSHSAVPELTLVNV*GDQVTA Trigger: TGCTGTCACCTGGTCACCTCACACATTGACCAGAGT...TAGTTCAGGGACAGCAGAGTGACTGGTTAATTGAGCTCTGCGTAGGTCACTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAGAGGGGAAGCAGGCCCGACAGTGTTAACTTTTAAGACCACTTCCAGGCTGCATTCTGCTACTTACTaGGCCACATCCTCAATCCAA | + |
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Preference number: 2 (lower is better) Translates to: ERGEAGPTVLTFKTTSRLHSATY*ATSSIQ Trigger: TTGGATTGAGGATGTGGCTCAGTAAGTAGCAGAATG...CAGCCTGGAAGTGGTCTTAAAAGTTAACACTGTCGGGCCTGCTTCCCCTCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | GAGAGAGGGGAAGCAGGCCCGACAGTGTTAACTTTTAAGACCACTTCCAGGCTGCTGTACTTAGGCATGTaGCATGTGGACCTTGCATAT | + |
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Preference number: 2 (lower is better) Translates to: ERGEAGPTVLTFKTTSRLLYLGM*HVDLAY Trigger: ATATGCAAGGTCCACATGTCACATGCCTAAGTACAG...CAGCCTGGAAGTGGTCTTAAAAGTTAACACTGTCGGGCCTGCTTCCCCTCTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTCAAGCTTAAAACTTCTGCCAAGTACAAACATGAAAATGGGAACTAGGAAGCTGGGCTGGTGGAGGTaGAGGCCACCTGCAGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: FSSLKLLPSTNMKMGTRKLGWWR*RPPAVP Trigger: TGGGACTGCAGGTGGCCTCCACCTCCACCAGCCCAG...CTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCAGAAGTTTTAAGCTTGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | GGAATGTCCCTTTGTAACTCATATCTGCTGCTACACTGGAATTGTCTGACTGATTGTGAGGTGACCAGGTaGCAGCACCTGCTCTCTAGA | + |
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Preference number: 2 (lower is better) Translates to: GMSLCNSYLLLHWNCLTDCEVTR*QHLLSR Trigger: TCTAGAGAGCAGGTGCTGTCACCTGGTCACCTCACA...ATCAGTCAGACAATTCCAGTGTAGCAGCAGATATGAGTTACAAAGGGACATTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | GGAATGTCCCTTTGTAACTCATATCTGCTGCTACACTGGAATTGTCTGACTGATCCCTGGTTTACACAGTaGGCTCTAGGTCAGCCAGGA | + |
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Preference number: 2 (lower is better) Translates to: GMSLCNSYLLLHWNCLTDPWFTQ*ALGQPG Trigger: TCCTGGCTGACCTAGAGCTCACTGTGTAAACCAGGG...ATCAGTCAGACAATTCCAGTGTAGCAGCAGATATGAGTTACAAAGGGACATTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR GCA 90 bp | GGCCCGACAGTGTTAACTTTTAAGACCACTTCCAGGCTGCTGCATGACCTGGACAATAAAGAATTCACGTaGCAAATGGCTTCCAGGGTA | + |
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Preference number: 2 (lower is better) Translates to: GPTVLTFKTTSRLLHDLDNKEFT*QMASRV Trigger: TACCCTGGAAGCCATTTGGCACGTGAATTCTTTATT...GTCCAGGTCATGCAGCAGCCTGGAAGTGGTCTTAAAAGTTAACACTGTCGGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR CCA 90 bp | TCAAGCTTAAAACTTCTGCCAAGTACAAACATGAAAATGGGAACTAGGAAGCAGGTAAAGCTGGGCTGGTaGAGGTGGAGGCCACCTGCA | + |
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Preference number: 2 (lower is better) Translates to: SSLKLLPSTNMKMGTRKQVKLGW*RWRPPA Trigger: TGCAGGTGGCCTCCACCTCCACCAGCCCAGCTTTAC...CTGCTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCAGAAGTTTTAAGCTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAGAGGGGAAGCAGGCCCGACAGTGTTAACTTTTAAGACCACTTCCAGGCTGAGTTTGGAAAAACTGTaGGTAAATCAGGGCTCAAGT | + |
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Preference number: 2 (lower is better) Translates to: ERGEAGPTVLTFKTTSRLSLEKL*VNQGSS Trigger: ACTTGAGCCCTGATTTACCCACAGTTTTTCCAAACT...CAGCCTGGAAGTGGTCTTAAAAGTTAACACTGTCGGGCCTGCTTCCCCTCTCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCTTTGTAACTCATATCTGCTGCTACACTGGAATTGTCTGACTGATGCTGAAGGAAGCAGCAGAGTATaGAATGTCCTCCTGAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: SLCNSYLLLHWNCLTDAEGSSRV*NVLLRS Trigger: GCTCCTCAGGAGGACATTTCATACTCTGCTGCTTCC...TTCAGCATCAGTCAGACAATTCCAGTGTAGCAGCAGATATGAGTTACAAAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR GCA 90 bp | TGGACTGGAAACCTCACACAGCTGAACCTTGCAAAGAACGTAGGTGTCAAGGGCCAAGCCAACAAAACGTaGTGTCATCATGAATCAATT | + |
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Preference number: 2 (lower is better) Translates to: WTGNLTQLNLAKNVGVKGQANKT*CHHESI Trigger: AATTGATTCATGATGACAGCACGTTTTGTTGGCTTG...GCCCTTGACACCTACGTTCTTTGCAAGGTTCAGCTGTGTGAGGTTTCCAGTCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | AGTGTGCCAATAAGCCAATTTCTATGCTGTTGCCTCATTGCTCACTCTGTGTACTGCCAAGTACAAACATaGAAATGGGAACTAGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: SVPISQFLCCCLIAHSVYCQVQT*KWELGS Trigger: GCTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCA...GTACACAGAGTGAGCAATGAGGCAACAGCATAGAAATTGGCTTATTGGCACACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCTTTGTAACTCATATCTGCTGCTACACTGGAATTGTCTGACTGATGCTGAAGCTCACTCTGTGTACTaGAACACACTGCTTCTAAAG | + |
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Preference number: 2 (lower is better) Translates to: SLCNSYLLLHWNCLTDAEAHSVY*NTLLLK Trigger: CTTTAGAAGCAGTGTGTTTCAGTACACAGAGTGAGC...TTCAGCATCAGTCAGACAATTCCAGTGTAGCAGCAGATATGAGTTACAAAGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | TCCCTTTGTAACTCATATCTGCTGCTACACTGGAATTGTCTGACTGATGCTGAATTACTAAGCACCATTTaGGGGCTTTTGTGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: SLCNSYLLLHWNCLTDAELLSTI*GLLCVC Trigger: ACACACACACAAAAGCCCTCAAATGGTGCTTAGTAA...TTCAGCATCAGTCAGACAATTCCAGTGTAGCAGCAGATATGAGTTACAAAGGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | GGAATGTCCCTTTGTAACTCATATCTGCTGCTACACTGGAATTGTCTGACTGATAAAACCAAAATCCCATaGTTTCTTCATGTTGGCATC | + |
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Preference number: 2 (lower is better) Translates to: GMSLCNSYLLLHWNCLTDKTKIP*FLHVGI Trigger: GATGCCAACATGAAGAAATCATGGGATTTTGGTTTT...ATCAGTCAGACAATTCCAGTGTAGCAGCAGATATGAGTTACAAAGGGACATTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR-3UTR TCA 90 bp | TTCTCAAGCTTAAAACTTCTGCCAAGTACAAACATGAAAATGGGAACTAGGAAGTCATGTTGGCATCCATaGAAGAATGAGATCACTTTT | + |
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Preference number: 2 (lower is better) Translates to: FSSLKLLPSTNMKMGTRKSCWHP*KNEITF Trigger: AAAAGTGATCTCATTCTTTCATGGATGCCAACATGA...CTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCAGAAGTTTTAAGCTTGAGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 72 bp | GATTTGCTCCTGCGACGGCCAGTTTGGTCAGAGCACTaGCTCTCAGTACGAACACAGGGAAGGGCAGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: DLLLRRPVWSEH*LSVRTQGRAAE Trigger: TTCTGCTGCCCTTCCCTGTGTTCGTACTGAGAGGCAGTGCTCTGACCAAACTGGCCGTCGCAGGAGCAAATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 72 bp | CCCCAGCTGGTAGGAACTTTCAGTATGAACTGGATTTaGTCCTGCGACGGCCAGTTTGGTCAGAGCACTGCC | + |
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Preference number: 3 (lower is better) Translates to: PQLVGTFSMNWI*SCDGQFGQSTA Trigger: GGCAGTGCTCTGACCAAACTGGCCGTCGCAGGAGCAAATCCAGTTCATACTGAAAGTTCCTACCAGCTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 72 bp | AAGAGCCTGAAGCAGCCATGCGCAGTAGTTTCAGAATaGACATGGCTACACGCAGGGCTCTGGGGAATCGAA | + |
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Preference number: 3 (lower is better) Translates to: KSLKQPCAVVSE*TWLHAGLWGIE Trigger: TTCGATTCCCCAGAGCCCTGCGTGTAGCCATGTGCATTCTGAAACTACTGCGCATGGCTGCTTCAGGCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 72 bp | GTCTGGACCTTCAGCTTCTCTGCCTCCAGTCTGGTCTaGTGTTGCACCCTCTGTTCCTCTAGGATCTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: VWTFSFSASSLV*CCTLCSSRISS Trigger: TGAAGAGATCCTAGAGGAACAGAGGGTGCAACAGCAGACCAGACTGGAGGCAGAGAAGCTGAAGGTCCAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000211168.2 ENSMUST00000211670.2 |
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| 3UTR TCA 72 bp | AGCGTGATACTCTGGTCAATGTGTGAGGTGACCAGGTaGCAGCACCTGCTCTCTAGAGCAGTCTCTGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: SVILWSMCEVTR*QHLLSRAVSEQ Trigger: TTGCTCAGAGACTGCTCTAGAGAGCAGGTGCTGTCACCTGGTCACCTCACACATTGACCAGAGTATCACGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 72 bp | CATGACCTGGACTGGAAACCTCACACAGCTGAACCTTaGAAAGAACGTAGGTGTCAAGGGCAGGAATGTCCC | + |
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Preference number: 3 (lower is better) Translates to: HDLDWKPHTAEP*KERRCQGQECP Trigger: GGGACATTCCTGCCCTTGACACCTACGTTCTTTGCAAGGTTCAGCTGTGTGAGGTTTCCAGTCCAGGTCATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR GCA 72 bp | CTGGTAGGAACTTTCAGTATGAACTGGATTTGCTCCTaGGACGGCCAGTTTGGTCAGAGCACTGCCTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: LVGTFSMNWICS*DGQFGQSTASQ Trigger: CTGAGAGGCAGTGCTCTGACCAAACTGGCCGTCGCAGGAGCAAATCCAGTTCATACTGAAAGTTCCTACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR CCA 72 bp | TTTAAGACCACTTCCAGGCTGCTGCATGACCTGGACTaGAAACCTCACACAGCTGAACCTTGCAAAGAACGT | + |
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Preference number: 3 (lower is better) Translates to: FKTTSRLLHDLD*KPHTAEPCKER Trigger: ACGTTCTTTGCAAGGTTCAGCTGTGTGAGGTTTCCAGTCCAGGTCATGCAGCAGCCTGGAAGTGGTCTTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR TCA 72 bp | CTCTGTTCCTCTAGGATCTCTTCAATAGACACTTGCTaGAGGGGCGTGTCACTCTCCTTCTCCAGGTCTATT | + |
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Preference number: 3 (lower is better) Translates to: LCSSRISSIDTC*RGVSLSFSRSI Trigger: AATAGACCTGGAGAAGGAGAGTGACACGCCCCTTCAGCAAGTGTCTATTGAAGAGATCCTAGAGGAACAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211670.2 |
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| 3UTR GCA 72 bp | CCACGAAAATCCCTCGAGGAATATCACCGTACTTTTTaGCCACATGAATTCGCTCCACAGTCTGATGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: PRKSLEEYHRTF*PHEFAPQSDGA Trigger: TGCTCCATCAGACTGTGGAGCGAATTCATGTGGGCAAAAAGTACGGTGATATTCCTCGAGGGATTTTCGTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211670.2 |
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| 3UTR-3UTR CAA 90 bp | CACACAGCTGAACCTTGCAAAGAACGTAGGTGTCAAGGGCAGGAATGTCCCTTTCCAATTTCTATGCTGTaGCCTCATTGCTCACTCTGT | + |
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Preference number: 3 (lower is better) Translates to: HTAEPCKERRCQGQECPFPISML*PHCSLC Trigger: ACAGAGTGAGCAATGAGGCAACAGCATAGAAATTGG...AAAGGGACATTCCTGCCCTTGACACCTACGTTCTTTGCAAGGTTCAGCTGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR TCA 72 bp | CACTGGAATTGTCTGACTGATGCTGAAATAACTAAGTaGCCTACGCAGAGCTCAATTAACCAGTCACTCTGC | + |
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Preference number: 3 (lower is better) Translates to: HWNCLTDAEITK*PTQSSINQSLC Trigger: GCAGAGTGACTGGTTAATTGAGCTCTGCGTAGGTCACTTAGTTATTTCAGCATCAGTCAGACAATTCCAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR TCA 72 bp | AACCAAAATCCCATGATTTCTTCATGTTGGCATCCATaGAAGAATGAGATCACTTTTCAGCGTGATACTCTG | + |
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Preference number: 3 (lower is better) Translates to: NQNPMISSCWHP*KNEITFQRDTL Trigger: CAGAGTATCACGCTGAAAAGTGATCTCATTCTTTCATGGATGCCAACATGAAGAAATCATGGGATTTTGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR CCA 72 bp | GAGAGCAAAGCATATTCTTATAGTTTGGAAAAACTGTaGGTAAATCAGGGCTCAAGTTTTCTAAACCTGAGG | + |
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Preference number: 3 (lower is better) Translates to: ESKAYSYSLEKL*VNQGSSFLNLR Trigger: CCTCAGGTTTAGAAAACTTGAGCCCTGATTTACCCACAGTTTTTCCAAACTATAAGAATATGCTTTGCTCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR TCA 90 bp | CTAGAGCAGTCTCTGAGCAAGGACTCAGTACTCGTCCAGAGTGTCTGCGCGAGGTGTCGATGTCCTCGATaGGGCTGGCGGTGCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LEQSLSKDSVLVQSVCARCRCPR*GWRCRA Trigger: TGCCCGGCACCGCCAGCCTCATCGAGGACATCGACA...CCTCGCGCAGACACTCTGGACGAGTACTGAGTCCTTGCTCAGAGACTGCTCTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211168.2 |
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| CDS-3UTR TCA 90 bp | GGAAAGGCCCCGATCTTTAAGGGTCTGGACCTTCAGCTTCTCTGCCTCCAGTCTTGTCGATGTCCTCGATaGGGCTGGCGGTGCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GKAPIFKGLDLQLLCLQSCRCPR*GWRCRA Trigger: TGCCCGGCACCGCCAGCCTCATCGAGGACATCGACA...AGACTGGAGGCAGAGAAGCTGAAGGTCCAGACCCTTAAAGATCGGGGCCTTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000211168.2 ENSMUST00000211670.2 |
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| CDS-3UTR GCA 90 bp | TGGTCAGAGCACTGCCTCTCAGTACGAACACAGGGAAGGGCAGCAGAAGCAGGCAGTCTGGTCTGCTGTTaGACCCTCTGTTCCTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: WSEHCLSVRTQGRAAEAGSLVCC*TLCSSR Trigger: CCTAGAGGAACAGAGGGTGCAACAGCAGACCAGACT...GCCTGCTTCTGCTGCCCTTCCCTGTGTTCGTACTGAGAGGCAGTGCTCTGACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| 3UTR CAA 72 bp | CCCCCAGCTGGTAGGAACTTTCAGTATGAACTGGATTaGCTCCTGCGACGGCCAGTTTGGTCAGAGCACTGC | + |
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Preference number: 4 (lower is better) Translates to: PPAGRNFQYELD*LLRRPVWSEHC Trigger: GCAGTGCTCTGACCAAACTGGCCGTCGCAGGAGCAAATCCAGTTCATACTGAAAGTTCCTACCAGCTGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR GCA 90 bp | GCCCCGATCTTTAAGGGTCTGGACCTTCAGCTTCTCTGCCTCCAGTCTGGTCTGCGAAGTAGGACCAAGTaGTTTTTGTCGATGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: APIFKGLDLQLLCLQSGLRSRTK*FLSMSS Trigger: CGAGGACATCGACAAAAAGCACTTGGTCCTACTTCG...CAGACCAGACTGGAGGCAGAGAAGCTGAAGGTCCAGACCCTTAAAGATCGGGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211670.2 |
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| CDS-3UTR TCA 90 bp | TGGACTGGAAACCTCACACAGCTGAACCTTGCAAAGAACGTAGGTGTCAAGGGCTCAATAGACACTTGCTaGAGGGGCGTGTCACTCTCC | + |
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Preference number: 4 (lower is better) Translates to: WTGNLTQLNLAKNVGVKGSIDTC*RGVSLS Trigger: GGAGAGTGACACGCCCCTTCAGCAAGTGTCTATTGA...GCCCTTGACACCTACGTTCTTTGCAAGGTTCAGCTGTGTGAGGTTTCCAGTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR TCA 90 bp | TTCTCAAGCTTAAAACTTCTGCCAAGTACAAACATGAAAATGGGAACTAGGAAGTGTCGATGTCCTCGATaGGGCTGGCGGTGCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: FSSLKLLPSTNMKMGTRKCRCPR*GWRCRA Trigger: TGCCCGGCACCGCCAGCCTCATCGAGGACATCGACA...CTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCAGAAGTTTTAAGCTTGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR GCA 90 bp | AGTGTGCCAATAAGCCAATTTCTATGCTGTTGCCTCATTGCTCACTCTGTGTACGACCTTCAGCTTCTCTaGCTCCAGTCTGGTCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SVPISQFLCCCLIAHSVYDLQLL*LQSGLL Trigger: CAGCAGACCAGACTGGAGGCAGAGAAGCTGAAGGTC...GTACACAGAGTGAGCAATGAGGCAACAGCATAGAAATTGGCTTATTGGCACACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR CCA 90 bp | CTAAGTGACCTACGCAGAGCTCAATTAACCAGTCACTCTGCTGTCCCTGAACTACGATCTTTAAGGGTCTaGACCTTCAGCTTCTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LSDLRRAQLTSHSAVPELRSLRV*TFSFSA Trigger: GGCAGAGAAGCTGAAGGTCCAGACCCTTAAAGATCG...TAGTTCAGGGACAGCAGAGTGACTGGTTAATTGAGCTCTGCGTAGGTCACTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR TCA 90 bp | AGTGTGCCAATAAGCCAATTTCTATGCTGTTGCCTCATTGCTCACTCTGTGTACATTCGCTCCACAGTCTaGTGGAGCACTAAGTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: SVPISQFLCCCLIAHSVYIRSTV*WSTKLA Trigger: TGCTAACTTAGTGCTCCATCAGACTGTGGAGCGAAT...GTACACAGAGTGAGCAATGAGGCAACAGCATAGAAATTGGCTTATTGGCACACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR CCA 90 bp | TTCTCAAGCTTAAAACTTCTGCCAAGTACAAACATGAAAATGGGAACTAGGAAGTCTCTGCCTCCAGTCTaGTCTGCTGTTGCACCCTCT | + |
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Preference number: 4 (lower is better) Translates to: FSSLKLLPSTNMKMGTRKSLPPV*SAVAPS Trigger: AGAGGGTGCAACAGCAGACCAGACTGGAGGCAGAGA...CTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCAGAAGTTTTAAGCTTGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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| CDS-3UTR GCA 90 bp | TCAAGCTTAAAACTTCTGCCAAGTACAAACATGAAAATGGGAACTAGGAAGCAGCGAAGTAGGACCAAGTaGTTTTTGTCGATGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SSLKLLPSTNMKMGTRKQRSRTK*FLSMSS Trigger: CGAGGACATCGACAAAAAGCACTTGGTCCTACTTCG...CTGCTTCCTAGTTCCCATTTTCATGTTTGTACTTGGCAGAAGTTTTAAGCTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038421.8 |
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