Pregenerated sensors for LRRN4CL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071656Ensembl transcript IDs: ENSMUST00000096257.3, ENSMUST00000235683.2
Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCCTGGGCTTCCGCTCTGGCTTGGCTGTGCCTCTGGTTGCCAGGTaGCAACAAGCCCCACACTCCTCCTGGGAGTGGGTTGGGCTCTCC | + |
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Preference number: 1 (lower is better) Translates to: CLGFRSGLAVPLVAR*QQAPHSSWEWVGLS Trigger: GGAGAGCCCAACCCACTCCCAGGAGGAGTGTGGGGCTTGTTGCCACCTGGCAACCAGAGGCACAGCCAAGCCAGAGCGGAAGCCCAGGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR GCA 90 bp | CTATATTATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTaGTTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTG | + |
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Preference number: 1 (lower is better) Translates to: LYYLGWPGIFLCRSG*FGNSDPPASASRVL Trigger: CAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATAATATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CCA 90 bp | GGAAGCCACCGACAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTaGCAAATCAGCCAACAGGCCAAATGTAGTCTGCTGCTTGCTGTG | + |
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Preference number: 1 (lower is better) Translates to: GSHRQSQSPFENDRC*QISQQAKCSLLLAV Trigger: CACAGCAAGCAGCAGACTACATTTGGCCTGTTGGCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTGTCGGTGGCTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR TCA 90 bp | AGAATTAGACACTGGATCTCCTGGAAATGGAATTACAGATGGTTGTaGGCTGCCATGTGGATGCTAGGAATAAAATTCTGTCCTCTGGAA | + |
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Preference number: 1 (lower is better) Translates to: RIRHWISWKWNYRWL*AAMWMLGIKFCPLE Trigger: TTCCAGAGGACAGAATTTTATTCCTAGCATCCACATGGCAGCTCACAACCATCTGTAATTCCATTTCCAGGAGATCCAGTGTCTAATTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | GGCTGCTTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGACTCCTCTGGTTGCCAGGTaGCAACAAGCCCCACACTCC | + |
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Preference number: 2 (lower is better) Translates to: GCFGNSDPPASASRVLETPLVAR*QQAPHS Trigger: GGAGTGTGGGGCTTGTTGCCACCTGGCAACCAGAGG...AGTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGCCTCTGGTTGCCAGGTaGCAACAAGCCCCACACTCC | + |
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Preference number: 2 (lower is better) Translates to: LHIYPAYSQNMRGSHPQSPLVAR*QQAPHS Trigger: GGAGTGTGGGGCTTGTTGCCACCTGGCAACCAGAGG...CGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCAAAACTCAGCTTATTCTCAAAATATGCAGGGAAGCCACCGACAGTCACCCTGGGCTTCCGCTCTaGCTTGGCTGTGCCTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: VGKTQLILKICREATDSHPGLPL*LGCASG Trigger: ACCAGAGGCACAGCCAAGCCAGAGCGGAAGCCCAGG...GTGACTGTCGGTGGCTTCCCTGCATATTTTGAGAATAAGCTGAGTTTTGCCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR GCA 90 bp | CTCCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGAAACTCAGATCCGCCTaGCTCTGCTTCCAGGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: LHIYPAYSQNMRGSHPQSKLRSA*LCFQGA Trigger: AGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTT...CGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCCTCCTGGGAGTGGGTTaGGCTCTCCAGATGAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: PPKQTRPLTYVARSLGPVLLGVG*ALQMSC Trigger: ACAACTCATCTGGAGAGCCCAACCCACTCCCAGGAG...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CAA 90 bp | ATTATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTaGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGA | + |
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Preference number: 2 (lower is better) Translates to: IIWVGLESFYVDQAA*ETQIRLPLLPGCWR Trigger: TCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCCAACAGGCCAAACTCAGATCCGCCTaGCTCTGCTTCCAGGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: QSQSPFENDRCWQISQQAKLRSA*LCFQGA Trigger: AGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTT...GGCCTGTTGGCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | TATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGGAAACTCAGCTTCCGCTCTGGCTTaGCTGTGCCTCTGGTTGCCA | + |
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Preference number: 2 (lower is better) Translates to: YLGWPGIFLCRSGCFGNSASALA*LCLWLP Trigger: TGGCAACCAGAGGCACAGCCAAGCCAGAGCGGAAGC...TGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR GCA 90 bp | CTATATTATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGGAAGATCCGCCTGCCTCTaGTTCCAGGGTGCTGGAGAC | + |
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Preference number: 2 (lower is better) Translates to: LYYLGWPGIFLCRSGCFGRSACL*FQGAGD Trigger: GTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCT...TCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATAATATAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGCAGAGAATGATAGGTGTTaGCAAATCAGCCAACAGGCC | + |
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Preference number: 2 (lower is better) Translates to: PHLPCLFSKYAWKPPTVAENDRC*QISQQA Trigger: GGCCTGTTGGCTGATTTGCCAACACCTATCATTCTC...TGCGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | AAACCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTTTCCATAGCCCCAGGTaGAGTCTGAGCAGGATCATC | + |
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Preference number: 2 (lower is better) Translates to: KPPKQTRPLTYVARSLGPFHSPR*SLSRII Trigger: GATGATCCTGCTCAGACTCCACCTGGGGCTATGGAA...AGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGGTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CACTATATTATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGCTCCTGGGAGTGGGTTaGGCTCTCCAGATGAGTTGT | + |
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Preference number: 2 (lower is better) Translates to: HYIIWVGLESFYVDQAALLLGVG*ALQMSC Trigger: ACAACTCATCTGGAGAGCCCAACCCACTCCCAGGAG...CAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATAATATAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | GAGACTAAAATTGTAAACCACCATGCCAGGCCTTTAAATAGCTCCATTTTAACTCCTGGGCTTCCGCTCTaGCTTGGCTGTGCCTCTGGT | + |
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Preference number: 2 (lower is better) Translates to: ETKIVNHHARPLNSSILTPGLPL*LGCASG Trigger: ACCAGAGGCACAGCCAAGCCAGAGCGGAAGCCCAGG...AGTTAAAATGGAGCTATTTAAAGGCCTGGCATGGTGGTTTACAATTTTAGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGAGACACTGGATCTCCTaGAAATGGAATTACAGATGG | + |
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Preference number: 2 (lower is better) Translates to: LHIYPAYSQNMRGSHPQSRHWIS*KWNYRW Trigger: CCATCTGTAATTCCATTTCCAGGAGATCCAGTGTCT...CGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGCAAGACACTGGATCTCCTaGAAATGGAATTACAGATGG | + |
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Preference number: 2 (lower is better) Translates to: PHLPCLFSKYAWKPPTVARHWIS*KWNYRW Trigger: CCATCTGTAATTCCATTTCCAGGAGATCCAGTGTCT...TGCGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCTCTCACTATATTATCTaGGTTGGCCTGGAATCTTTC | + |
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Preference number: 2 (lower is better) Translates to: PPKQTRPLTYVARSLGPVSHYII*VGLESF Trigger: GAAAGATTCCAGGCCAACCCAGATAATATAGTGAGA...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR TCA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCCTGTTTTACTCTTTTTaGGACAGGGTCTCACTATAT | + |
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Preference number: 2 (lower is better) Translates to: PPKQTRPLTYVARSLGPVLFYSF*DRVSLY Trigger: ATATAGTGAGACCCTGTCTCAAAAAGAGTAAAACAG...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | CCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGCACAGAATAACAGGTGTTaGCAAAACTCAGCTTATTCT | + |
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Preference number: 2 (lower is better) Translates to: PHLPCLFSKYAWKPPTVAQNNRC*QNSAYS Trigger: AGAATAAGCTGAGTTTTGCCAACACCTGTTATTCTG...TGCGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCACCGACAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCCTATATTATCTGGGTTaGCCTGGAATCTTTCTATGT | + |
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Preference number: 2 (lower is better) Translates to: SHRQSQSPFENDRCWQISLYYLG*PGIFLC Trigger: ACATAGAAAGATTCCAGGCCAACCCAGATAATATAG...GCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTGTCGGTGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR GCA 72 bp | CCTGGGCTTCCGCTCTGGCTTGGCTGTGCCTCTGGTTaGCAGGTGGCAACAAGCCCCACACTCCTCCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: PGLPLWLGCASG*QVATSPTLLLG Trigger: TCCCAGGAGGAGTGTGGGGCTTGTTGCCACCTGGCAACCAGAGGCACAGCCAAGCCAGAGCGGAAGCCCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CCA 72 bp | TTCCGCTCTGGCTTGGCTGTGCCTCTGGTTGCCAGGTaGCAACAAGCCCCACACTCCTCCTGGGAGTGGGTT | + |
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Preference number: 3 (lower is better) Translates to: FRSGLAVPLVAR*QQAPHSSWEWV Trigger: AACCCACTCCCAGGAGGAGTGTGGGGCTTGTTGCCACCTGGCAACCAGAGGCACAGCCAAGCCAGAGCGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCCCTCCTGGGAGTGGGTaGGGCTCTCCAGATGAGTTG | + |
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Preference number: 3 (lower is better) Translates to: PPKQTRPLTYVARSLGPVPPGSG*GSPDEL Trigger: CAACTCATCTGGAGAGCCCAACCCACTCCCAGGAGG...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | AAACCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTCCTCCTGGGAGTGGGTaGGGCTCTCCAGATGAGTTG | + |
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Preference number: 3 (lower is better) Translates to: KPPKQTRPLTYVARSLGPPPGSG*GSPDEL Trigger: CAACTCATCTGGAGAGCCCAACCCACTCCCAGGAGG...AGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | CTATATTATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGGAGGCTTCCGCTCTGGCTaGGCTGTGCCTCTGGTTGCC | + |
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Preference number: 3 (lower is better) Translates to: LYYLGWPGIFLCRSGCFGGFRSG*AVPLVA Trigger: GGCAACCAGAGGCACAGCCAAGCCAGAGCGGAAGCC...TCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATAATATAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR GCA 72 bp | AGCAGAAAGACAGAGCTCCAGTCTCCACATCTACCCTaGTTATTCTCAAAATATGCGTGGAAGCCACCCACA | + |
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Preference number: 3 (lower is better) Translates to: SRKTELQSPHLP*LFSKYAWKPPT Trigger: TGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGGAGACTGGAGCTCTGTCTTTCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CCA 72 bp | CGACAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTaGCAAATCAGCCAACAGGCCAAATGTAGTCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: RQSQSPFENDRC*QISQQAKCSLL Trigger: CAGCAGACTACATTTGGCCTGTTGGCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTGTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | CCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGCAACTATATTATCTGGGTaGGCCTGGAATCTTTCTATG | + |
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Preference number: 3 (lower is better) Translates to: PHLPCLFSKYAWKPPTVATILSG*AWNLSM Trigger: CATAGAAAGATTCCAGGCCAACCCAGATAATATAGT...TGCGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR GCA 72 bp | ACAGGTGTTGGCAAAACTCAGCTTATTCTCAAAATATaGAGGGAAGCCACCGACAGTCACAAAGTCCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: TGVGKTQLILKI*REATDSHKVPL Trigger: CAAAGGGACTTTGTGACTGTCGGTGGCTTCCCTGCATATTTTGAGAATAAGCTGAGTTTTGCCAACACCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | TCTGCTGCTTGCTGTGAGAGACCTATGAGCTATGAACAGTTTACATTTTTAAACGGCTCTCCAGATGAGTaGTTTGTAGTCGAGGGGACT | + |
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Preference number: 3 (lower is better) Translates to: SAACCERPMSYEQFTFLNGSPDE*FVVEGT Trigger: AGTCCCCTCGACTACAAACAACTCATCTGGAGAGCC...GTTTAAAAATGTAAACTGTTCATAGCTCATAGGTCTCTCACAGCAAGCAGCAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCACCGACAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCACTATATTATCTGGGTaGGCCTGGAATCTTTCTATG | + |
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Preference number: 3 (lower is better) Translates to: SHRQSQSPFENDRCWQISTILSG*AWNLSM Trigger: CATAGAAAGATTCCAGGCCAACCCAGATAATATAGT...GCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTGTCGGTGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR-3UTR CAA 90 bp | GAGACTAAAATTGTAAACCACCATGCCAGGCCTTTAAATAGCTCCATTTTAACTGGCTCTCCAGATGAGTaGTTTGTAGTCGAGGGGACT | + |
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Preference number: 3 (lower is better) Translates to: ETKIVNHHARPLNSSILTGSPDE*FVVEGT Trigger: AGTCCCCTCGACTACAAACAACTCATCTGGAGAGCC...AGTTAAAATGGAGCTATTTAAAGGCCTGGCATGGTGGTTTACAATTTTAGTCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR TCA 72 bp | TGTATGTATGTATGTATGTGTGCGTATGTATGTGCCTaGTGCTGGCAGAGGTCAGAATTAGACACTGGATCT | + |
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Preference number: 3 (lower is better) Translates to: CMYVCMCAYVCA*CWQRSELDTGS Trigger: AGATCCAGTGTCTAATTCTGACCTCTGCCAGCATCAGGCACATACATACGCACACATACATACATACATACA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR GCA 72 bp | GATCTCCTGGAAATGGAATTACAGATGGTTGTGAGCTaGCATGTGGATGCTAGGAATAAAATTCTGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: DLLEMELQMVVS*HVDARNKILSS Trigger: AGAGGACAGAATTTTATTCCTAGCATCCACATGGCAGCTCACAACCATCTGTAATTCCATTTCCAGGAGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR GCA 72 bp | TGTATGTATGTATGTATGTATGTGTGCGTATGTATGTaGCTGATGCTGGCAGAGGTCAGAATTAGACACTGG | + |
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Preference number: 3 (lower is better) Translates to: CMYVCMYVCVCM*LMLAEVRIRHW Trigger: CCAGTGTCTAATTCTGACCTCTGCCAGCATCAGGCACATACATACGCACACATACATACATACATACATACA 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | GGCTGCTTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGACTTTCCCTGGAGAGCCCTaGGCACAGGCAGGCTACTGG | + |
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Preference number: 4 (lower is better) Translates to: GCFGNSDPPASASRVLETFPGEP*AQAGYW Trigger: CCAGTAGCCTGCCTGTGCCCAGGGCTCTCCAGGGAA...AGTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CAA 72 bp | AGTGCTGAGGCTAATTGCCTGGGCTTCCGCTCTGGCTaGGCTGTGCCTCTGGTTGCCAGGTGGCAACAAGCC | + |
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Preference number: 4 (lower is better) Translates to: SAEANCLGFRSG*AVPLVARWQQA Trigger: GGCTTGTTGCCACCTGGCAACCAGAGGCACAGCCAAGCCAGAGCGGAAGCCCAGGCAATTAGCCTCAGCACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | GGCTGCTTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGACTACTGGCCCAACCTTCTaGAGCTCCTGGCAGGACACC | + |
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Preference number: 4 (lower is better) Translates to: GCFGNSDPPASASRVLETTGPTF*SSWQDT Trigger: GGTGTCCTGCCAGGAGCTGCAGAAGGTTGGGCCAGT...AGTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CAA 72 bp | GGTGGCAACAAGCCCCACACTCCTCCTGGGAGTGGGTaGGGCTCTCCAGATGAGTTGTTTGTAGTCGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: GGNKPHTPPGSG*GSPDELFVVEG Trigger: CCCCTCGACTACAAACAACTCATCTGGAGAGCCCAACCCACTCCCAGGAGGAGTGTGGGGCTTGTTGCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | GGCTGCTTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGACTTCACGAAGGCAGAAATaGCAAACCAGGGCTGCACAG | + |
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Preference number: 4 (lower is better) Translates to: GCFGNSDPPASASRVLETSRRQK*QTRAAQ Trigger: CTGTGCAGCCCTGGTTTGGCATTTCTGCCTTCGTGA...AGTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | CCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGCAACTGGCCCAACCTTCTaGAGCTCCTGGCAGGACACC | + |
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Preference number: 4 (lower is better) Translates to: PHLPCLFSKYAWKPPTVATGPTF*SSWQDT Trigger: GGTGTCCTGCCAGGAGCTGCAGAAGGTTGGGCCAGT...TGCGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCGCAGAGCTAAGGCTGTaGCCACTCCCACGGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: PPKQTRPLTYVARSLGPVAELRL*PLPRLH Trigger: ATGCAGCCGTGGGAGTGGGCACAGCCTTAGCTCTGC...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | CAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCCAACAGGCCTTCCCTGGAGAGCCCTaGGCACAGGCAGGCTACTGG | + |
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Preference number: 4 (lower is better) Translates to: QSQSPFENDRCWQISQQAFPGEP*AQAGYW Trigger: CCAGTAGCCTGCCTGTGCCCAGGGCTCTCCAGGGAA...GGCCTGTTGGCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | CTCCACATCTACCCTGCTTATTCTCAAAATATGCGTGGAAGCCACCCACAGTCGGCTGTTGATCTTCCCTaGAGAGCCCTGGGCACAGGC | + |
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Preference number: 4 (lower is better) Translates to: LHIYPAYSQNMRGSHPQSAVDLP*RALGTG Trigger: GCCTGTGCCCAGGGCTCTCCAGGGAAGATCAACAGC...CGACTGTGGGTGGCTTCCACGCATATTTTGAGAATAAGCAGGGTAGATGTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR TCA 90 bp | TTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGACTAAAATTGAAGCCAGTAGTGGCTaGCTGGAGAGAAGGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: FGNSDPPASASRVLETKIEASSG*LERREH Trigger: GTGCTCCCTTCTCTCCAGTCAGCCACTACTGGCTTC...AATTTTAGTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | CCCCACACTCCTCCTGGGAGTGGGTTGGGCTCTCCAGATGAGTTGTTTGTAGTCTCTTCAGCCATTATTTaGACTTCTCCCAGGCGAGGA | + |
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Preference number: 4 (lower is better) Translates to: PHTPPGSGLGSPDELFVVSSAII*TSPRRG Trigger: TCCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGA...GACTACAAACAACTCATCTGGAGAGCCCAACCCACTCCCAGGAGGAGTGTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | AGCCACCGACAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCGCAGAGCTAAGGCTGTaGCCACTCCCACGGCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: SHRQSQSPFENDRCWQISAELRL*PLPRLH Trigger: ATGCAGCCGTGGGAGTGGGCACAGCCTTAGCTCTGC...GCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTGTCGGTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| 3UTR CAA 72 bp | GTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTaGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VGLESFYVDQAA*ETQIRLPLLPG Trigger: CCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR TCA 90 bp | GTTGGCAAAACTCAGCTTATTCTCAAAATATGCAGGGAAGCCACCGACAGTCACGGAGGCTCTGGCTGTTaGTCTTCCCTGGAGAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: VGKTQLILKICREATDSHGGSGC*SSLESP Trigger: AGGGCTCTCCAGGGAAGATCAACAGCCAGAGCCTCC...GTGACTGTCGGTGGCTTCCCTGCATATTTTGAGAATAAGCTGAGTTTTGCCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR TCA 90 bp | AGCCACCGACAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCGAAGCCAGTAGTGGCTaGCTGGAGAGAAGGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: SHRQSQSPFENDRCWQISEASSG*LERREH Trigger: GTGCTCCCTTCTCTCCAGTCAGCCACTACTGGCTTC...GCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTGTCGGTGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCTCACGAAGGCAGAAATaGCAAACCAGGGCTGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: PPKQTRPLTYVARSLGPVSRRQK*QTRAAQ Trigger: CTGTGCAGCCCTGGTTTGGCATTTCTGCCTTCGTGA...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | TATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGGAAACTCACCAAGGAGGTGGTCATaGCTGCCAGCCACAGAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: YLGWPGIFLCRSGCFGNSPRRWS*LPATEG Trigger: CCCTTCTGTGGCTGGCAGCCATGACCACCTCCTTGG...TGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | CAGTCACAAAGTCCCTTTGAGAATGATAGGTGTTGGCAAATCAGCCAACAGGCCCCAGTAGTGGCTGACTaGAGAGAAGGGAGCACACCA | + |
|
Preference number: 4 (lower is better) Translates to: QSQSPFENDRCWQISQQAPVVAD*REGSTP Trigger: TGGTGTGCTCCCTTCTCTCCAGTCAGCCACTACTGG...GGCCTGTTGGCTGATTTGCCAACACCTATCATTCTCAAAGGGACTTTGTGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR TCA 90 bp | GACCTCCAAGGAATAATTGCTACTTTTTCTAACCCCCAACAGGGAAGGAACATAGGAGGCTCTGGCTGTTaGTCTTCCCTGGAGAGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: DLQGIIATFSNPQQGRNIGGSGC*SSLESP Trigger: AGGGCTCTCCAGGGAAGATCAACAGCCAGAGCCTCC...TATGTTCCTTCCCTGTTGGGGGTTAGAAAAAGTAGCAATTATTCCTTGGAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | CCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTGTCTCTTCAGCCATTATTTaGACTTCTCCCAGGCGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: PPKQTRPLTYVARSLGPVSSAII*TSPRRG Trigger: TCCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGA...GACAGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | TATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGGAAACTCACCAGTAGTGGCTGACTaGAGAGAAGGGAGCACACCA | + |
|
Preference number: 4 (lower is better) Translates to: YLGWPGIFLCRSGCFGNSPVVAD*REGSTP Trigger: TGGTGTGCTCCCTTCTCTCCAGTCAGCCACTACTGG...TGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CCA 90 bp | GAGACTAAAATTGTAAACCACCATGCCAGGCCTTTAAATAGCTCCATTTTAACTCCAAGGAGGTGGTCATaGCTGCCAGCCACAGAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ETKIVNHHARPLNSSILTPRRWS*LPATEG Trigger: CCCTTCTGTGGCTGGCAGCCATGACCACCTCCTTGG...AGTTAAAATGGAGCTATTTAAAGGCCTGGCATGGTGGTTTACAATTTTAGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR GCA 90 bp | GAGACTAAAATTGTAAACCACCATGCCAGGCCTTTAAATAGCTCCATTTTAACTAGGACCCTCGACTTCTaGCCCAGGAACATTGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: ETKIVNHHARPLNSSILTRTLDF*PRNIAL Trigger: GAGAGCAATGTTCCTGGGGCAGAAGTCGAGGGTCCT...AGTTAAAATGGAGCTATTTAAAGGCCTGGCATGGTGGTTTACAATTTTAGTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CCA 90 bp | TCCCAGGCGAGGAGGCTCTGGCTGTTGATCTTCCCTGGAGAGCCCTaGGCACAGGCAGGCTACTGGCCCAACCTTCTGCAGCTCCTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SQARRLWLLIFPGEP*AQAGYWPNLLQLLA Trigger: TGCCAGGAGCTGCAGAAGGTTGGGCCAGTAGCCTGCCTGTGCCCAGGGCTCTCCAGGGAAGATCAACAGCCAGAGCCTCCTCGCCTGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CCA 90 bp | GCCTTCTTCAGCCATTATTTGCACTTCTCCCAGGCGAGGAGGCTCTaGCTGTTGATCTTCCCTGGAGAGCCCTGGGCACAGGCAGGCTAC | + |
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Preference number: 5 (lower is better) Translates to: AFFSHYLHFSQARRL*LLIFPGEPWAQAGY Trigger: GTAGCCTGCCTGTGCCCAGGGCTCTCCAGGGAAGATCAACAGCCAGAGCCTCCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGAAGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | GGCTGCTTTGGAAACTCAGATCCGCCTGCCTCTGCTTCCAGGGTGCTGGAGACTTTCTGTGGAGCCCCGTaGCTTTCCCAAAGCAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: GCFGNSDPPASASRVLETFCGAP*LSQSRS Trigger: GCTTCTGCTTTGGGAAAGCAACGGGGCTCCACAGAA...AGTCTCCAGCACCCTGGAAGCAGAGGCAGGCGGATCTGAGTTTCCAAAGCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS TCA 90 bp | TCTGTGGAGCCCCGTTGCTTTCCCAAAGCAGAAGCCAGTAGTGGCTaGCTGGAGAGAAGGGAGCACACCAGTGAACCACTGCGTAGCCTT | + |
|
Preference number: 5 (lower is better) Translates to: SVEPRCFPKAEASSG*LERREHTSEPLRSL Trigger: AAGGCTACGCAGTGGTTCACTGGTGTGCTCCCTTCTCTCCAGTCAGCCACTACTGGCTTCTGCTTTGGGAAAGCAACGGGGCTCCACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS GCA 90 bp | GTTCTCAGGACCCTCGACTTCTGCCCCAGGAACATTGCTCTCACCTaGGTCATTAGCAGCCACCACGCAAAGGACATAAGCAACCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: VLRTLDFCPRNIALT*VISSHHAKDISNPR Trigger: CCTGGGGTTGCTTATGTCCTTTGCGTGGTGGCTGCTAATGACGCAGGTGAGAGCAATGTTCCTGGGGCAGAAGTCGAGGGTCCTGAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS GCA 90 bp | CCAGTAGTGGCTGACTGGAGAGAAGGGAGCACACCAGTGAACCACTaGGTAGCCTTCTTCAGCCATTATTTGCACTTCTCCCAGGCGAGG | + |
|
Preference number: 5 (lower is better) Translates to: PVVADWREGSTPVNH*VAFFSHYLHFSQAR Trigger: CCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGAAGGCTACGCAGTGGTTCACTGGTGTGCTCCCTTCTCTCCAGTCAGCCACTACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CCA 90 bp | CAGCTCTGCTCTTCGAACTGTAGCATTGAGAGGGGCACTCTTCTGTaGAGCCCCGTTGCTTTCCCAAAGCAGAAGCCAGTAGTGGCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: QLCSSNCSIERGTLL*SPVAFPKQKPVVAD Trigger: GTCAGCCACTACTGGCTTCTGCTTTGGGAAAGCAACGGGGCTCCACAGAAGAGTGCCCCTCTCAATGCTACAGTTCGAAGAGCAGAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | AAACCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTAGGAGGCTCTGGCTGTaGATCTTCCCTGGAGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: KPPKQTRPLTYVARSLGPRRLWL*IFPGEP Trigger: GGGCTCTCCAGGGAAGATCAACAGCCAGAGCCTCCT...AGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | GTTGGCAAAACTCAGCTTATTCTCAAAATATGCAGGGAAGCCACCGACAGTCACGGTCAAGATCTGAGGTaGGGAAACCAAGGAGGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: VGKTQLILKICREATDSHGQDLR*GNQGGG Trigger: ACCACCTCCTTGGTTTCCCAACCTCAGATCTTGACC...GTGACTGTCGGTGGCTTCCCTGCATATTTTGAGAATAAGCTGAGTTTTGCCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | TATCTGGGTTGGCCTGGAATCTTTCTATGTAGATCAGGCTGCTTTGGAAACTCAGGTCAAGATCTGAGGTaGGGAAACCAAGGAGGTGGT | + |
|
Preference number: 5 (lower is better) Translates to: YLGWPGIFLCRSGCFGNSGQDLR*GNQGGG Trigger: ACCACCTCCTTGGTTTCCCAACCTCAGATCTTGACC...TGAGTTTCCAAAGCAGCCTGATCTACATAGAAAGATTCCAGGCCAACCCAGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | GTTGGCAAAACTCAGCTTATTCTCAAAATATGCAGGGAAGCCACCGACAGTCACTTCTTCAGCCATTATTaGCACTTCTCCCAGGCGAGG | + |
|
Preference number: 5 (lower is better) Translates to: VGKTQLILKICREATDSHFFSHY*HFSQAR Trigger: CCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGAA...GTGACTGTCGGTGGCTTCCCTGCATATTTTGAGAATAAGCTGAGTTTTGCCAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | AAACCCCCAAAACAAACAAGACCACTAACTTATGTAGCCAGAAGCTTGGGCCCTTTCTTCAGCCATTATTaGCACTTCTCCCAGGCGAGG | + |
|
Preference number: 5 (lower is better) Translates to: KPPKQTRPLTYVARSLGPFFSHY*HFSQAR Trigger: CCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGAA...AGGGCCCAAGCTTCTGGCTACATAAGTTAGTGGTCTTGTTTGTTTTGGGGGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS-3UTR CAA 90 bp | TCTGCTGCTTGCTGTGAGAGACCTATGAGCTATGAACAGTTTACATTTTTAAACTTCTGTGGAGCCCCGTaGCTTTCCCAAAGCAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: SAACCERPMSYEQFTFLNFCGAP*LSQSRS Trigger: GCTTCTGCTTTGGGAAAGCAACGGGGCTCCACAGAA...GTTTAAAAATGTAAACTGTTCATAGCTCATAGGTCTCTCACAGCAAGCAGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS GCA 72 bp | CGTCGGGGGCAACCCCATCGCTCACGAAGGCAGAAATaGCAAACCAGGGCTGCACAGCTCAGCAGAGCTAAG | + |
|
Preference number: 6 (lower is better) Translates to: RRGQPHRSRRQK*QTRAAQLSRAK Trigger: CTTAGCTCTGCTGAGCTGTGCAGCCCTGGTTTGGCATTTCTGCCTTCGTGAGCGATGGGGTTGCCCCCGACG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS TCA 72 bp | CCCCGTTGCTTTCCCAAAGCAGAAGCCAGTAGTGGCTaGCTGGAGAGAAGGGAGCACACCAGTGAACCACTG | + |
|
Preference number: 6 (lower is better) Translates to: PRCFPKAEASSG*LERREHTSEPL Trigger: CAGTGGTTCACTGGTGTGCTCCCTTCTCTCCAGTCAGCCACTACTGGCTTCTGCTTTGGGAAAGCAACGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CAA 72 bp | CCCTTCCTGGTAGTCTTCCAGGGTCAAGATCTGAGGTaGGGAAACCAAGGAGGTGGTCATGGCTGCCAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: PFLVVFQGQDLR*GNQGGGHGCQP Trigger: TGGCTGGCAGCCATGACCACCTCCTTGGTTTCCCAACCTCAGATCTTGACCCTGGAAGACTACCAGGAAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CAA 90 bp | ATCCTCTTCCCCTTCCTGGTAGTCTTCCAGGGTCAAGATCTGAGGTaGGGAAACCAAGGAGGTGGTCATGGCTGCCAGCCACAGAAGGGA | + |
|
Preference number: 6 (lower is better) Translates to: ILFPFLVVFQGQDLR*GNQGGGHGCQPQKG Trigger: TCCCTTCTGTGGCTGGCAGCCATGACCACCTCCTTGGTTTCCCAACCTCAGATCTTGACCCTGGAAGACTACCAGGAAGGGGAAGAGGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CAA 90 bp | GGGAGCACACCAGTGAACCACTGCGTAGCCTTCTTCAGCCATTATTaGCACTTCTCCCAGGCGAGGAGGCTCTGGCTGTTGATCTTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: GSTPVNHCVAFFSHY*HFSQARRLWLLIFP Trigger: AGGGAAGATCAACAGCCAGAGCCTCCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGAAGGCTACGCAGTGGTTCACTGGTGTGCTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CAA 72 bp | CCAGTGAACCACTGCGTAGCCTTCTTCAGCCATTATTaGCACTTCTCCCAGGCGAGGAGGCTCTGGCTGTTG | + |
|
Preference number: 6 (lower is better) Translates to: PVNHCVAFFSHY*HFSQARRLWLL Trigger: CAACAGCCAGAGCCTCCTCGCCTGGGAGAAGTGCAAATAATGGCTGAAGAAGGCTACGCAGTGGTTCACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS GCA 72 bp | GCTGACTGGAGAGAAGGGAGCACACCAGTGAACCACTaGGTAGCCTTCTTCAGCCATTATTTGCACTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: ADWREGSTPVNH*VAFFSHYLHFS Trigger: GGAGAAGTGCAAATAATGGCTGAAGAAGGCTACGCAGTGGTTCACTGGTGTGCTCCCTTCTCTCCAGTCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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| CDS CCA 72 bp | TCTTCGAACTGTAGCATTGAGAGGGGCACTCTTCTGTaGAGCCCCGTTGCTTTCCCAAAGCAGAAGCCAGTA | + |
|
Preference number: 6 (lower is better) Translates to: SSNCSIERGTLL*SPVAFPKQKPV Trigger: TACTGGCTTCTGCTTTGGGAAAGCAACGGGGCTCCACAGAAGAGTGCCCCTCTCAATGCTACAGTTCGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096257.3 ENSMUST00000235683.2 |
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