Pregenerated sensors for LRRN3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036295Ensembl transcript IDs: ENSMUST00000043884.6
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CCCTTTGAAGCCAGTCAATTAAAATGCCGAACTTTCACCTCTCCCTaGGTCAGGAGCAGCATTGGCGACACTGAGCCTTCTTTTCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: PFEASQLKCRTFTSP*VRSSIGDTEPSFQK Trigger: TTTCTGAAAAGAAGGCTCAGTGTCGCCAATGCTGCTCCTGACCAAGGGAGAGGTGAAAGTTCGGCATTTTAATTGACTGGCTTCAAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR CCA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTACTTTCACCTCTCCCTTaGTCAGGAGCAGCATTGGCG | + |
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Preference number: 2 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLLSPLP*SGAALA Trigger: CGCCAATGCTGCTCCTGACCAAGGGAGAGGTGAAAG...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR GCA 90 bp | CTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGCACAGGAGGAGGTATTaGTCAGTTCAACTACTCTTC | + |
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Preference number: 2 (lower is better) Translates to: LSITPRVNSSLSGHCKNSHRRRY*SVQLLF Trigger: GAAGAGTAGTTGAACTGAGCAATACCTCCTCCTGTG...CGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR TCA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTTTCCAGCTTTTCTTTaGAGTAGGTTTGGTTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: HILTVSTLQNLSFPLHHVFPAFL*SRFGWL Trigger: CAACCAACCAAACCTACTTCAAAGAAAAGCTGGAAA...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR TCA 90 bp | CCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTCTTCTTTTCAGAAAGTaGCATTCCCCTGCCTATTTT | + |
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Preference number: 2 (lower is better) Translates to: PHTHCVYSTEFVLSITPRLLFRK*HSPAYF Trigger: AAAATAGGCAGGGGAATGTCACTTTCTGAAAAGAAG...ACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR TCA 90 bp | CTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTTGCCACAGTACCCTTTaGAGCCAGTCAATTAAAATG | + |
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Preference number: 2 (lower is better) Translates to: LTVSTLQNLSFPLHHVSICHSTL*SQSIKM Trigger: CATTTTAATTGACTGGCTTCAAAGGGTACTGTGGCA...AATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR GCA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCGCCAGTCAATTAAAATaGCGAACTTTCACCTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSASQLK*RTFTSP Trigger: GGGAGAGGTGAAAGTTCGGCATTTTAATTGACTGGC...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR CAA 90 bp | CTTATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTaGTCCTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: LIKEVHILTVSTLQN*SFPLHHVSIQVYLV Trigger: GACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR GCA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCAGTTTATCTGGTCACTaGAAAAACTCGTGGCTAATA | + |
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Preference number: 2 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSSLSGH*KNSWLI Trigger: TATTAGCCACGAGTTTTTGCAGTGACCAGATAAACT...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR GCA 90 bp | TCCTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTATTTTTAAGCAGTACTaGCGTTTCCAGCTTTTCTTT | + |
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Preference number: 2 (lower is better) Translates to: SFPLHHVSIQVYLVTAKTIFKQY*RFQLFF Trigger: AAAGAAAAGCTGGAAACGGCAGTACTGCTTAAAAAT...AGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAGGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACTGCAAAAACTCGTaGCTAATATGTGTAATACAA | + |
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Preference number: 2 (lower is better) Translates to: KEVHILTVSTLQNLSFPLHCKNS*LICVIQ Trigger: TTGTATTACACATATTAGCCACGAGTTTTTGCAGTG...TAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR GCA 72 bp | GTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAATaGCGAACTTTCACCTCTCCCTTGGTCAGGAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: VATVPFEASQLK*RTFTSPLVRSS Trigger: GCTGCTCCTGACCAAGGGAGAGGTGAAAGTTCGGCATTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR CAA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTAACTTTCACCTCTCCCTaGGTCAGGAGCAGCATTGGC | + |
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Preference number: 3 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLTFTSP*VRSSIG Trigger: GCCAATGCTGCTCCTGACCAAGGGAGAGGTGAAAGT...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR CAA 90 bp | CCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTAATTGTTTTATTTGGTaGCCACAGTACCCTTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: PHTHCVYSTEFVLSITPRNCFIW*PQYPLK Trigger: CTTCAAAGGGTACTGTGGCAACCAAATAAAACAATT...ACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR TCA 72 bp | AATGGAATTGTTTTATTTGGTTGCCACAGTACCCTTTaGAGCCAGTCAATTAAAATGCCGAACTTTCACCTC | + |
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Preference number: 3 (lower is better) Translates to: NGIVLFGCHSTL*SQSIKMPNFHL Trigger: GAGGTGAAAGTTCGGCATTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAACCAAATAAAACAATTCCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR-3UTR CAA 90 bp | TCCTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTATGGAATTGTTTTATTaGGTTGCCACAGTACCCTTT | + |
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Preference number: 3 (lower is better) Translates to: SFPLHHVSIQVYLVTAKTMELFY*VATVPF Trigger: AAAGGGTACTGTGGCAACCAAATAAAACAATTCCAT...AGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR GCA 72 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTaGAAAAACTCGTGGCTAATATGTGTAATACAACAC | + |
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Preference number: 3 (lower is better) Translates to: ITPRVNSSLSGH*KNSWLICVIQH Trigger: GTGTTGTATTACACATATTAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR GCA 90 bp | AGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACATGTGCTCACCCTCACTaGTCCCTTCTTGTGAGACAC | + |
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Preference number: 4 (lower is better) Translates to: RGPHTHCVYSTEFVLSITCAHPH*SLLVRH Trigger: GTGTCTCACAAGAAGGGAGCAGTGAGGGTGAGCACA...TGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTGTCGGCAGGCAATCTaGCTGGGAAGTTTAAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: HILTVSTLQNLSFPLHHVCRQAI*LGSLKA Trigger: GGCTTTTAAACTTCCCAGCCAGATTGCCTGCCGACA...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | GTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAATGCCGAACTTTCACCTCTAGCCAAGGCGTCGTCTaGTATTTCCGTGAGGTTTAT | + |
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Preference number: 4 (lower is better) Translates to: VATVPFEASQLKCRTFTSSQGVV*YFREVY Trigger: ATAAACCTCACGGAAATACCAGACGACGCCTTGGCT...AGAGGTGAAAGTTCGGCATTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | TCCTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCCAGGCTGCGAAGCTTaGCAAGAGGCTGAAAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SFPLHHVSIQVYLVTAKTPGCEA*QEAESS Trigger: TGAACTTTCAGCCTCTTGTCAAGCTTCGCAGCCTGG...AGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTAGCACTTTGGGCAGCATaGGAGTCTTCAGTCTTGACA | + |
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Preference number: 4 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLALWAA*ESSVLT Trigger: TGTCAAGACTGAAGACTCTCATGCTGCCCAAAGTGC...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR GCA 90 bp | CCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCAACGGCTTTTTGAAGTaGAACCTGGGGAACCTTACT | + |
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Preference number: 4 (lower is better) Translates to: PLHHVSIQVYLVTAKTRGNGFLK*NLGNLT Trigger: AGTAAGGTTCCCCAGGTTGCACTTCAAAAAGCCGTT...GCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTAGCCAGTCAGGTTCACTaGGAAGTCTGTGGAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLASQVH*EVCGMF Trigger: GAACATTCCACAGACTTCCCAGTGAACCTGACTGGC...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | CTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTGATCCAGTAGATTTCTaGCTGGGGTTCTGCAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LTVSTLQNLSFPLHHVSIDPVDF*LGFCSS Trigger: GCTACTGCAGAACCCCAGCCAGAAATCTACTGGATC...AATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | CTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGGACACATTACACCAATaGTCCCTAGAAGGCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LSITPRVNSSLSGHCKNSDTLHQ*SLEGLQ Trigger: TTGGAGGCCTTCTAGGGATCATTGGTGTAATGTGTC...CGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | ATGGAATTGTTTTATTTGGTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAAAGGCCAAGTAGCACATaGACTTGGAGTGGCGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: MELFYLVATVPFEASQLKRPSST*TWSGVS Trigger: GGACACGCCACTCCAAGTCCATGTGCTACTTGGCCT...TTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAACCAAATAAAACAATTCCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCCGAACATTCTGGCCTTaGAATTCAGGTGGGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSRTFWP*NSGGST Trigger: TGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCG...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | AAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTAACTTGCCGAACATTCTaGCCTTGGAATTCAGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: KEVHILTVSTLQNLSFPLTCRTF*PWNSGG Trigger: CCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGT...TAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | TTGTTGTTGATTTTTAAGCAGTACTGCCGTTTCCAGCTTTTCTTTGAAGTAGGTGATTATGTAGGCCAATaGAGGCTCCGGGAGAAATGG | + |
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Preference number: 4 (lower is better) Translates to: LLLIFKQYCRFQLFFEVGDYVGQ*RLREKW Trigger: CCATTTCTCCCGGAGCCTTCATTGGCCTACATAATC...ACCTACTTCAAAGAAAAGCTGGAAACGGCAGTACTGCTTAAAAATCAACAACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCGCAGTCTGTTTGAGTTaGGATGAAGCCGGAGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSAVCLS*DEAGED Trigger: ATCTTCTCCGGCTTCATCTCAACTCAAACAGACTGC...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | TTGTTGTTGATTTTTAAGCAGTACTGCCGTTTCCAGCTTTTCTTTGAAGTAGGTCATCTGCAGTCTGTTTaGGTTGAGATGAAGCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: LLLIFKQYCRFQLFFEVGHLQSV*VEMKPE Trigger: CTCCGGCTTCATCTCAACTCAAACAGACTGCAGATG...ACCTACTTCAAAGAAAAGCTGGAAACGGCAGTACTGCTTAAAAATCAACAACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGCTTGTGAGACACAGCTaGAAAGACACATTACACCAA | + |
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Preference number: 4 (lower is better) Translates to: HILTVSTLQNLSFPLHHVLVRHS*KDTLHQ Trigger: TTGGTGTAATGTGTCTTTTCAGCTGTGTCTCACAAG...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR GCA 90 bp | GTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAATGCCGAACTTTCACCTCTTATCATAAAAGGAGATaGTTTCTAGGTTCTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: VATVPFEASQLKCRTFTSYHKRR*FLGSPG Trigger: GCCTGGAGAACCTAGAAAGCATCTCCTTTTATGATA...AGAGGTGAAAGTTCGGCATTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGACAGAACAGCGAGTCTaGTTCCATAAACCGAATGTT | + |
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Preference number: 4 (lower is better) Translates to: HILTVSTLQNLSFPLHHVTEQRV*FHKPNV Trigger: AACATTCGGTTTATGGAACCAGACTCGCTGTTCTGT...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | ATGGAATTGTTTTATTTGGTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAAGCCTTGGAATTCAGGTaGGTCCACACAGAACAGCGA | + |
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Preference number: 4 (lower is better) Translates to: MELFYLVATVPFEASQLKALEFR*VHTEQR Trigger: TCGCTGTTCTGTGTGGACCCACCTGAATTCCAAGGC...TTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAACCAAATAAAACAATTCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | TCCTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTACTGAAAGCCAAGGCTaGCTTGTGACAGTGATTCAC | + |
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Preference number: 4 (lower is better) Translates to: SFPLHHVSIQVYLVTAKTTESQG*LVTVIH Trigger: GTGAATCACTGTCACAAGCCAGCCTTGGCTTTCAGT...AGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| 3UTR CAA 72 bp | GAGGTCCACATACTCACTGTGTCTACTCTACAGAATTaGTCCTTTCCATTACACCACGTGTCAATTCAAGTT | + |
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Preference number: 4 (lower is better) Translates to: EVHILTVSTLQN*SFPLHHVSIQV Trigger: AACTTGAATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | CTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTAGAGCATCAAACCATTaGCTGTTGATCATCTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LTVSTLQNLSFPLHHVSIRASNH*LLIICS Trigger: ACTGCAGATGATCAACAGTCAATGGTTTGATGCTCT...AATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | AAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTAAGCTTGACAAGAGGCTaGAAGTTCATGTCCTTGATC | + |
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Preference number: 4 (lower is better) Translates to: KEVHILTVSTLQNLSFPLSLTRG*KFMSLI Trigger: GATCAAGGACATGAACTTTCAGCCTCTTGTCAAGCT...TAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR GCA 90 bp | CTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGATCATATCCCTGAAATaGACTTGCCGAACATTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LSITPRVNSSLSGHCKNSIISLK*TCRTFW Trigger: CCAGAATGTTCGGCAAGTGCATTTCAGGGATATGAT...CGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR GCA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTTTTACTTCCAGTGTTaGCCGTTTTTCTTTGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HILTVSTLQNLSFPLHHVFYFQC*PFFFAG Trigger: TCCAGCAAAGAAAAACGGGCAACACTGGAAGTAAAA...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CCA 90 bp | CCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTTCAGAATCTCGAGATTaGGAAGAGCATCAAACCATT | + |
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Preference number: 4 (lower is better) Translates to: PHTHCVYSTEFVLSITPRSESRD*EEHQTI Trigger: AATGGTTTGATGCTCTTCCCAATCTCGAGATTCTGA...ACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTAGAAGATAAATTGTTTTaGGATAAGTCCAGGCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLEDKLF*DKSRPV Trigger: GACTGGCCTGGACTTATCTCAAAACAATTTATCTTC...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCTTTCCATCATATCCCTaGAATGCACTTGCCGAACAT | + |
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Preference number: 4 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSFPSYP*NALAEH Trigger: ATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAA...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR TCA 90 bp | CTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGCCAGACTTTTTGTGGTaGCATTCACACATTGTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: LSITPRVNSSLSGHCKNSPDFLW*HSHIVF Trigger: GAAAACAATGTGTGAATGTCACCACAAAAAGTCTGG...CGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR GCA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGCTCTTATCTCTAGTGTaGCTTCAGAATGAACATAGA | + |
|
Preference number: 4 (lower is better) Translates to: HILTVSTLQNLSFPLHHVLLSLV*LQNEHR Trigger: TCTATGTTCATTCTGAAGGCACACTAGAGATAAGAG...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CCA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCTACCTTGACATCAAATaGTATTCGAGCACTTTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSYLDIK*YSSTLG Trigger: GCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTA...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR TCA 90 bp | TTGTTGTTGATTTTTAAGCAGTACTGCCGTTTCCAGCTTTTCTTTGAAGTAGGTCTGTTTGAGTTGAGATaGAGCCGGAGAAGATTATGT | + |
|
Preference number: 4 (lower is better) Translates to: LLLIFKQYCRFQLFFEVGLFELR*SRRRLC Trigger: ACATAATCTTCTCCGGCTTCATCTCAACTCAAACAG...ACCTACTTCAAAGAAAAGCTGGAAACGGCAGTACTGCTTAAAAATCAACAACAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR TCA 90 bp | TTGTTGTTGATTTTTAAGCAGTACTGCCGTTTCCAGCTTTTCTTTGAAGTAGGTCAAACCATTGACTGTTaGTCATCTGCAGTCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LLLIFKQYCRFQLFFEVGQTIDC*SSAVCL Trigger: CAAACAGACTGCAGATGATCAACAGTCAATGGTTTG...ACCTACTTCAAAGAAAAGCTGGAAACGGCAGTACTGCTTAAAAATCAACAACAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR GCA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTATGGGAGTCTGAAAAATaGATTAGGGTGAATGTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLWESEK*IRVNVR Trigger: TCTTACATTCACCCTAATGCATTTTTCAGACTCCCA...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR GCA 90 bp | GTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTCAAGTTTATTCTTTTCCGTCATaGTCCAGACTTTTTGTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VSTLQNLSFPLHHVSIQVYSFPS*SRLFVV Trigger: CACCACAAAAAGTCTGGAGCATGACGGAAAAGAATA...AACTTGAATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR GCA 90 bp | ATGGAATTGTTTTATTTGGTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAACACTCCTATAGCCGTTaGTTTTACTTCCAGTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: MELFYLVATVPFEASQLKHSYSR*FYFQCC Trigger: GCAACACTGGAAGTAAAAGCAACGGCTATAGGAGTG...TTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAACCAAATAAAACAATTCCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR TCA 90 bp | ATGGAATTGTTTTATTTGGTTGCCACAGTACCCTTTGAAGCCAGTCAATTAAAATTTTACCAGAAGGTGTaGTCCAGTAGATTTCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: MELFYLVATVPFEASQLKFYQKV*SSRFLA Trigger: AGCCAGAAATCTACTGGATCACACCTTCTGGTAAAA...TTTTAATTGACTGGCTTCAAAGGGTACTGTGGCAACCAAATAAAACAATTCCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CCA 90 bp | ATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTATTTGTACTCGGTAGATaGTTTCAGATGAGTAAGATT | + |
|
Preference number: 4 (lower is better) Translates to: ITPRVNSSLSGHCKNSWLFVLGR*FQMSKI Trigger: AATCTTACTCATCTGAAACCATCTACCGAGTACAAA...TAGCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CCA 90 bp | AGGCAAATTTCCATCATATCCCTGAAATGCACTTGCCGAACATTCTaGCCTTGGAATTCAGGTGGGTCCACACAGAACAGCGAGTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: RQISIISLKCTCRTF*PWNSGGSTQNSESG Trigger: ACCAGACTCGCTGTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS GCA 90 bp | GCTATAAGAGGGAGGCAAATTTCCATCATATCCCTGAAATGCACTTaGCGAACATTCTGGCCTTGGAATTCAGGTGGGTCCACACAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: AIRGRQISIISLKCT*RTFWPWNSGGSTQN Trigger: GTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTCCCTCTTATAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS GCA 90 bp | TCAGGAGCTATAAGAGGGAGGCAAATTTCCATCATATCCCTGAAATaGACTTGCCGAACATTCTGGCCTTGGAATTCAGGTGGGTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: SGAIRGRQISIISLK*TCRTFWPWNSGGST Trigger: TGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTCCCTCTTATAGCTCCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CCA 90 bp | ATTTCCATCATATCCCTGAAATGCACTTGCCGAACATTCTGGCCTTaGAATTCAGGTGGGTCCACACAGAACAGCGAGTCTGGTTCCATA | + |
|
Preference number: 5 (lower is better) Translates to: ISIISLKCTCRTFWP*NSGGSTQNSESGSI Trigger: TATGGAACCAGACTCGCTGTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | CCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTCCGAACATTCTGGCCTaGGAATTCAGGTGGGTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: PHTHCVYSTEFVLSITPRPNILA*EFRWVH Trigger: GTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGG...ACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | CCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCTGGTATTCGAGCACTTaGGGCAGCATGAGAGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PLHHVSIQVYLVTAKTRGWYSST*GSMRVF Trigger: GAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCA...GCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | TCCTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTAGGGCACTGAGGGCGTaGGTGTTCAGCATGAGAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SFPLHHVSIQVYLVTAKTRALRA*VFSMRD Trigger: ATCTCTCATGCTGAACACCAACGCCCTCAGTGCCCT...AGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | CTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTGTTGCCCGTTTTTCTTaGCTGGACTCCCAGAGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: LTVSTLQNLSFPLHHVSIVARFS*LDSQRL Trigger: CAACCTCTGGGAGTCCAGCAAAGAAAAACGGGCAAC...AATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS TCA 90 bp | TTATATACCTTGACATCAAATGGTATTCGAGCACTTTGGGCAGCATaGGAGTCTTCAGTCTTGACAAAGGCTGTCCACTTAACGCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: LYTLTSNGIRALWAA*ESSVLTKAVHLTLD Trigger: ATCCAGCGTTAAGTGGACAGCCTTTGTCAAGACTGAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS TCA 90 bp | CCAATGATCCCTAGAAGGCCTCCAACACAGGCCACAAATACTGTATaGTTCTTTCCATATTCTTTTCCGTCATGCTCCAGACTTTTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: PMIPRRPPTQATNTV*FFPYSFPSCSRLFV Trigger: CACAAAAAGTCTGGAGCATGACGGAAAAGAATATGGAAAGAATCATACAGTATTTGTGGCCTGTGTTGGAGGCCTTCTAGGGATCATTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | CTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTGGCAGCTCAGTTAGCTaGTTTTCCTCTAGGTACACA | + |
|
Preference number: 5 (lower is better) Translates to: LTVSTLQNLSFPLHHVSIGSSVS*FSSRYT Trigger: TGTGTACCTAGAGGAAAACAAGCTAACTGAGCTGCC...AATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | CACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTGTATGCTGATTTCCTaGAGGTTCGGCAAAGACTCT | + |
|
Preference number: 5 (lower is better) Translates to: HILTVSTLQNLSFPLHHVCMLIS*RFGKDS Trigger: AGAGTCTTTGCCGAACCTCAAGGAAATCAGCATACA...CACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | GTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTCAAGTTATCCCTGAAATGCACTaGCCGAACATTCTGGCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: VSTLQNLSFPLHHVSIQVIPEMH*PNILAL Trigger: CAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGAT...AACTTGAATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS-3UTR CAA 90 bp | CCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCGACACCAGAACAGAATaGGCCCTGATATCTCTTATT | + |
|
Preference number: 5 (lower is better) Translates to: PLHHVSIQVYLVTAKTRGDTRTE*ALISLI Trigger: AATAAGAGATATCAGGGCCAATTCTGTTCTGGTGTC...GCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | CCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGTGGCACAAGTTCAGGCATATaGTTTATCCCCAATTCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PLHHVSIQVYLVTAKTRGTSSGI*FIPNSF Trigger: GAAGGAATTGGGGATAAACAATATGCCTGAACTTGT...GCCACGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CCA 90 bp | GGTAGATGGTTTCAGATGAGTAAGATTATATACCTTGACATCAAATaGTATTCGAGCACTTTGGGCAGCATGAGAGTCTTCAGTCTTGAC | + |
|
Preference number: 5 (lower is better) Translates to: GRWFQMSKIIYLDIK*YSSTLGSMRVFSLD Trigger: GTCAAGACTGAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAATCTTACTCATCTGAAACCATCTACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | CTTTCCATTACACCACGTGTCAATTCAAGTTTATCTGGTCACTGCAAAAACTCGAAGAGCATCAAACCATaGACTGTTGATCATCTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: LSITPRVNSSLSGHCKNSKSIKP*TVDHLQ Trigger: CTGCAGATGATCAACAGTCAATGGTTTGATGCTCTT...CGAGTTTTTGCAGTGACCAGATAAACTTGAATTGACACGTGGTGTAATGGAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | AGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACAATCAGAATCTCGAGATaGGGAAGAGCATCAAACCAT | + |
|
Preference number: 5 (lower is better) Translates to: RGPHTHCVYSTEFVLSITIRISR*GRASNH Trigger: ATGGTTTGATGCTCTTCCCAATCTCGAGATTCTGAT...TGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCCTTTTACTTCCAGTGTaGCCCGTTTTTCTTTGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSLLLPV*PVFLCW Trigger: CCAGCAAAGAAAAACGGGCAACACTGGAAGTAAAAG...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | AAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTAAACCGAATGTTGGTTTaGTTCATGTTAATCCAGCGG | + |
|
Preference number: 5 (lower is better) Translates to: KEVHILTVSTLQNLSFPLNRMLV*FMLIQR Trigger: CCGCTGGATTAACATGAACAAAACCAACATTCGGTT...TAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | CTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCATTACACCACGTGTCAATTTCAATTCTTGCAATATaGTTAGTCTGTAGGAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: LTVSTLQNLSFPLHHVSISILAI*LVCRSR Trigger: TCTGCTCCTACAGACTAACAATATTGCAAGAATTGA...AATTGACACGTGGTGTAATGGAAAGGACAAATTCTGTAGAGTAGACACAGTGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS-3UTR CAA 90 bp | TATAAAAGAGGTCCACATACTCACTGTGTCTACTCTACAGAATTTGTCCTTTCCTTCAAATGTAGCATATaGCTAAAATCACCCCTCCGT | + |
|
Preference number: 5 (lower is better) Translates to: YKRGPHTHCVYSTEFVLSFKCSI*LKSPLR Trigger: ACGGAGGGGTGATTTTAGCAATATGCTACATTTGAA...GGAAAGGACAAATTCTGTAGAGTAGACACAGTGAGTATGTGGACCTCTTTTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS GCA 72 bp | AGAAGGTGTGATCCAGTAGATTTCTGGCTGGGGTTCTaGAGTAGCTCTGCAGTGAAGCGACACATAGCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: RRCDPVDFWLGF*SSSAVKRHIAV Trigger: GACAGCTATGTGTCGCTTCACTGCAGAGCTACTGCAGAACCCCAGCCAGAAATCTACTGGATCACACCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 72 bp | CATATCCCTGAAATGCACTTGCCGAACATTCTGGCCTaGGAATTCAGGTGGGTCCACACAGAACAGCGAGTC | + |
|
Preference number: 6 (lower is better) Translates to: HIPEMHLPNILA*EFRWVHTEQRV Trigger: GACTCGCTGTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS GCA 72 bp | CGGCACTCCTATAGCCGTTGCTTTTACTTCCAGTGTTaGCCGTTTTTCTTTGCTGGACTCCCAGAGGTTGAT | + |
|
Preference number: 6 (lower is better) Translates to: RHSYSRCFYFQC*PFFFAGLPEVD Trigger: ATCAACCTCTGGGAGTCCAGCAAAGAAAAACGGGCAACACTGGAAGTAAAAGCAACGGCTATAGGAGTGCCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CCA 72 bp | ATGCACTTGCCGAACATTCTGGCCTTGGAATTCAGGTaGGTCCACACAGAACAGCGAGTCTGGTTCCATAAA | + |
|
Preference number: 6 (lower is better) Translates to: MHLPNILALEFR*VHTEQRVWFHK Trigger: TTTATGGAACCAGACTCGCTGTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CCA 72 bp | TCCATCATATCCCTGAAATGCACTTGCCGAACATTCTaGCCTTGGAATTCAGGTGGGTCCACACAGAACAGC | + |
|
Preference number: 6 (lower is better) Translates to: SIISLKCTCRTF*PWNSGGSTQNS Trigger: GCTGTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 90 bp | GGTGGGTCCACACAGAACAGCGAGTCTGGTTCCATAAACCGAATGTaGGTTTTGTTCATGTTAATCCAGCGGATTACACAGTCGCAACGG | + |
|
Preference number: 6 (lower is better) Translates to: GGSTQNSESGSINRM*VLFMLIQRITQSQR Trigger: CCGTTGCGACTGTGTAATCCGCTGGATTAACATGAACAAAACCAACATTCGGTTTATGGAACCAGACTCGCTGTTCTGTGTGGACCCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 72 bp | AGGGAGGCAAATTTCCATCATATCCCTGAAATGCACTaGCCGAACATTCTGGCCTTGGAATTCAGGTGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: REANFHHIPEMH*PNILALEFRWV Trigger: GACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 90 bp | AATTTCCATCATATCCCTGAAATGCACTTGCCGAACATTCTGGCCTaGGAATTCAGGTGGGTCCACACAGAACAGCGAGTCTGGTTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: NFHHIPEMHLPNILA*EFRWVHTEQRVWFH Trigger: ATGGAACCAGACTCGCTGTTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 90 bp | AGCTATAAGAGGGAGGCAAATTTCCATCATATCCCTGAAATGCACTaGCCGAACATTCTGGCCTTGGAATTCAGGTGGGTCCACACAGAA | + |
|
Preference number: 6 (lower is better) Translates to: SYKREANFHHIPEMH*PNILALEFRWVHTE Trigger: TTCTGTGTGGACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTCCCTCTTATAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 90 bp | GTCAGGTTCACTGGGAAGTCTGTGGAATGTTCAATTCTTGCAATATaGTTAGTCTGTAGGAGCAGAATCTGTGTGTCGGCAGGCAATCTG | + |
|
Preference number: 6 (lower is better) Translates to: VRFTGKSVECSILAI*LVCRSRICVSAGNL Trigger: CAGATTGCCTGCCGACACACAGATTCTGCTCCTACAGACTAACAATATTGCAAGAATTGAACATTCCACAGACTTCCCAGTGAACCTGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CCA 72 bp | TCTGTAGGAGCAGAATCTGTGTGTCGGCAGGCAATCTaGCTGGGAAGTTTAAAAGCCCTAAATCATTACAGT | + |
|
Preference number: 6 (lower is better) Translates to: SVGAESVCRQAI*LGSLKALNHYS Trigger: ACTGTAATGATTTAGGGCTTTTAAACTTCCCAGCCAGATTGCCTGCCGACACACAGATTCTGCTCCTACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 72 bp | TTAATCCAGCGGATTACACAGTCGCAACGGATGGGATaGCTATGTATGCTGATTTCCTTGAGGTTCGGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: LIQRITQSQRMG*LCMLISLRFGK Trigger: TTTGCCGAACCTCAAGGAAATCAGCATACATAGCAATCCCATCCGTTGCGACTGTGTAATCCGCTGGATTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS CAA 90 bp | TTGTTCATGTTAATCCAGCGGATTACACAGTCGCAACGGATGGGATaGCTATGTATGCTGATTTCCTTGAGGTTCGGCAAAGACTCTATG | + |
|
Preference number: 6 (lower is better) Translates to: LFMLIQRITQSQRMG*LCMLISLRFGKDSM Trigger: CATAGAGTCTTTGCCGAACCTCAAGGAAATCAGCATACATAGCAATCCCATCCGTTGCGACTGTGTAATCCGCTGGATTAACATGAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS TCA 72 bp | TTGACATCAAATGGTATTCGAGCACTTTGGGCAGCATaGGAGTCTTCAGTCTTGACAAAGGCTGTCCACTTA | + |
|
Preference number: 6 (lower is better) Translates to: LTSNGIRALWAA*ESSVLTKAVHL Trigger: TAAGTGGACAGCCTTTGTCAAGACTGAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
||
| CDS GCA 72 bp | ATAAGAGGGAGGCAAATTTCCATCATATCCCTGAAATaGACTTGCCGAACATTCTGGCCTTGGAATTCAGGT | + |
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Preference number: 6 (lower is better) Translates to: IRGRQISIISLK*TCRTFWPWNSG Trigger: ACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTCCCTCTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CCA 72 bp | TCTGGGGTTGTTAGTAGCTTCTATTTTTCTCAAATCTaGCAAGTTATCCACAGCGAGACTGTCAATGGAGAC | + |
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Preference number: 6 (lower is better) Translates to: SGVVSSFYFSQI*QVIHSETVNGD Trigger: GTCTCCATTGACAGTCTCGCTGTGGATAACTTGCCAGATTTGAGAAAAATAGAAGCTACTAACAACCCCAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 72 bp | ACTGGGAAGTCTGTGGAATGTTCAATTCTTGCAATATaGTTAGTCTGTAGGAGCAGAATCTGTGTGTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: TGKSVECSILAI*LVCRSRICVSA Trigger: TGCCGACACACAGATTCTGCTCCTACAGACTAACAATATTGCAAGAATTGAACATTCCACAGACTTCCCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 72 bp | AACAGCGAGTCTGGTTCCATAAACCGAATGTTGGTTTaGTTCATGTTAATCCAGCGGATTACACAGTCGCAA | + |
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Preference number: 6 (lower is better) Translates to: NSESGSINRMLV*FMLIQRITQSQ Trigger: TTGCGACTGTGTAATCCGCTGGATTAACATGAACAAAACCAACATTCGGTTTATGGAACCAGACTCGCTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CCA 72 bp | TCAAATCTGGCAAGTTATCCACAGCGAGACTGTCAATaGAGACAAGTTCAGGCATATTGTTTATCCCCAATT | + |
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Preference number: 6 (lower is better) Translates to: SNLASYPQRDCQ*RQVQAYCLSPI Trigger: AATTGGGGATAAACAATATGCCTGAACTTGTCTCCATTGACAGTCTCGCTGTGGATAACTTGCCAGATTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 72 bp | ATTATATACCTTGACATCAAATGGTATTCGAGCACTTaGGGCAGCATGAGAGTCTTCAGTCTTGACAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: IIYLDIKWYSST*GSMRVFSLDKG Trigger: GCCTTTGTCAAGACTGAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 90 bp | ATGAGTAAGATTATATACCTTGACATCAAATGGTATTCGAGCACTTaGGGCAGCATGAGAGTCTTCAGTCTTGACAAAGGCTGTCCACTT | + |
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Preference number: 6 (lower is better) Translates to: MSKIIYLDIKWYSST*GSMRVFSLDKGCPL Trigger: AAGTGGACAGCCTTTGTCAAGACTGAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAATCTTACTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 72 bp | ACAGCGAGACTGTCAATGGAGACAAGTTCAGGCATATaGTTTATCCCCAATTCCTTCAAATGTAGCATATTG | + |
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Preference number: 6 (lower is better) Translates to: TARLSMETSSGI*FIPNSFKCSIL Trigger: CAATATGCTACATTTGAAGGAATTGGGGATAAACAATATGCCTGAACTTGTCTCCATTGACAGTCTCGCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CCA 72 bp | TTTCAGATGAGTAAGATTATATACCTTGACATCAAATaGTATTCGAGCACTTTGGGCAGCATGAGAGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: FQMSKIIYLDIK*YSSTLGSMRVF Trigger: GAAGACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAATCTTACTCATCTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 90 bp | AAGTTATCCACAGCGAGACTGTCAATGGAGACAAGTTCAGGCATATaGTTTATCCCCAATTCCTTCAAATGTAGCATATTGCTAAAATCA | + |
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Preference number: 6 (lower is better) Translates to: KLSTARLSMETSSGI*FIPNSFKCSILLKS Trigger: TGATTTTAGCAATATGCTACATTTGAAGGAATTGGGGATAAACAATATGCCTGAACTTGTCTCCATTGACAGTCTCGCTGTGGATAACTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS TCA 72 bp | TGTACATTAATATTAGTGACTGAAGATAAATTGTTTTaGGATAAGTCCAGGCCAGTCAGGTTCACTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: CTLILVTEDKLF*DKSRPVRFTGK Trigger: CTTCCCAGTGAACCTGACTGGCCTGGACTTATCTCAAAACAATTTATCTTCAGTCACTAATATTAATGTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CAA 72 bp | ATTTTAGAGCTCGCTTTCCAGGACACCAGAACAGAATaGGCCCTGATATCTCTTATTTTAATATTCAATGAC | + |
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Preference number: 6 (lower is better) Translates to: ILELAFQDTRTE*ALISLILIFND Trigger: GTCATTGAATATTAAAATAAGAGATATCAGGGCCAATTCTGTTCTGGTGTCCTGGAAAGCGAGCTCTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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| CDS CCA 72 bp | GGTGGGAATATCAATACAAATTTTGTACTCGGTAGATaGTTTCAGATGAGTAAGATTATATACCTTGACATC | + |
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Preference number: 6 (lower is better) Translates to: GGNINTNFVLGR*FQMSKIIYLDI Trigger: GATGTCAAGGTATATAATCTTACTCATCTGAAACCATCTACCGAGTACAAAATTTGTATTGATATTCCCACC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043884.6 |
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