Pregenerated sensors for LRRIQ4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027703Ensembl transcript IDs: ENSMUST00000108265.3, ENSMUST00000108267.8, ENSMUST00000172350.8
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGAAGCGCAGGTTGATCAGGCGCTTGAAGGAGTCCCGCAGCCCGTaGAGGCTGGTGTTGCGCAGGTACAGCAGATGCAGCGACACCCAG | + |
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Preference number: 5 (lower is better) Translates to: RKRRLIRRLKESRSP*RLVLRRYSRCSDTQ Trigger: CTGGGTGTCGCTGCATCTGCTGTACCTGCGCAACACCAGCCTGCACGGGCTGCGGGACTCCTTCAAGCGCCTGATCAACCTGCGCTTCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 90 bp | CGCAAGGGAAAACCTCGAAGTGATTCTGCTTCAGGTAGATCTCCCTaGGCTTGGTTTGGTTCACGATTTCCTCGGGCAGCGATTCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: RKGKPRSDSASGRSP*AWFGSRFPRAAIPG Trigger: TCCTGGAATCGCTGCCCGAGGAAATCGTGAACCAAACCAAGCTCAGGGAGATCTACCTGAAGCAGAATCACTTCGAGGTTTTCCCTTGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 90 bp | ACCATGGGGTTGTTCATCAGTGTTAGGACCTTAAGATTTACCAGGTaGTCAAGGTTCTCTGGGAGGCAGCAGAGTAAGTTGTCTTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TMGLFISVRTLRFTR*SRFSGRQQSKLSSS Trigger: GCTGGAAGACAACTTACTCTGCTGCCTCCCAGAGAACCTTGATCACCTGGTAAATCTTAAGGTCCTAACACTGATGAACAACCCCATGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CCA 90 bp | TTCCAGCAGCAGCTCTCTCAAATTTCGAGTACGGCAAATGGCATCTaGGAGTTGCTTAAGAAGATTATGCCGACAGTCAAGAACTTCCAG | + |
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Preference number: 5 (lower is better) Translates to: FQQQLSQISSTANGI*ELLKKIMPTVKNFQ Trigger: CTGGAAGTTCTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAATTTGAGAGAGCTGCTGCTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS GCA 90 bp | AGCAGCTCTCTCAAATTTCGAGTACGGCAAATGGCATCTGGGAGTTaGTTAAGAAGATTATGCCGACAGTCAAGAACTTCCAGATTTGGC | + |
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Preference number: 5 (lower is better) Translates to: SSSLKFRVRQMASGS*LRRLCRQSRTSRFG Trigger: GCCAAATCTGGAAGTTCTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAATTTGAGAGAGCTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 90 bp | CCTTGGGTAAATGTTCTTGTCTCAGTAGTTCCTTGGTCAGGGTTTTaGAGGTGTCAATTATGTCAAATCTGTGCATCTGCAGCTTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: PWVNVLVSVVPWSGF*RCQLCQICASAAWH Trigger: GTGCCAAGCTGCAGATGCACAGATTTGACATAATTGACACCTTCAAAACCCTGACCAAGGAACTACTGAGACAAGAACATTTACCCAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108265.3 |
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| CDS TCA 90 bp | TTAAGGAAAAGATTTCCTCTGGGAAGGACAAAAGGTCATTTCCTGTaGGCCCGAGTATCTTCAGGTTTGAAAGCAAGCTTATGCTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: LRKRFPLGRTKGHFL*ARVSSGLKASLCSV Trigger: CACCGAGCATAAGCTTGCTTTCAAACCTGAAGATACTCGGGCTCACAGGAAATGACCTTTTGTCCTTCCCAGAGGAAATCTTTTCCTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS GCA 90 bp | TTTCGAGTACGGCAAATGGCATCTGGGAGTTGCTTAAGAAGATTATaGCGACAGTCAAGAACTTCCAGATTTGGCATTAACCCCAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: FRVRQMASGSCLRRL*RQSRTSRFGINPKD Trigger: ATCCTTGGGGTTAATGCCAAATCTGGAAGTTCTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS GCA 72 bp | AGGTTGATCAGGCGCTTGAAGGAGTCCCGCAGCCCGTaGAGGCTGGTGTTGCGCAGGTACAGCAGATGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RLIRRLKESRSP*RLVLRRYSRCS Trigger: GCTGCATCTGCTGTACCTGCGCAACACCAGCCTGCACGGGCTGCGGGACTCCTTCAAGCGCCTGATCAACCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CCA 72 bp | ACAGCTCCAGGTGATGCAGGGATTTGCAAATGCCGGTaGGAATCTCGGTCAGGCCAGTGCGGTAGAGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: TAPGDAGICKCR*ESRSGQCGRAA Trigger: TGCGGCTCTACCGCACTGGCCTGACCGAGATTCCCACCGGCATTTGCAAATCCCTGCATCACCTGGAGCTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS GCA 72 bp | GACCGAACAGCTCCAGGTGATGCAGGGATTTGCAAATaGCGGTGGGAATCTCGGTCAGGCCAGTGCGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: DRTAPGDAGICK*RWESRSGQCGR Trigger: TCTACCGCACTGGCCTGACCGAGATTCCCACCGGCATTTGCAAATCCCTGCATCACCTGGAGCTGTTCGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS GCA 72 bp | CTGACAGACCGAACAGCTCCAGGTGATGCAGGGATTTaGAAATGCCGGTGGGAATCTCGGTCAGGCCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: LTDRTAPGDAGI*KCRWESRSGQC Trigger: GCACTGGCCTGACCGAGATTCCCACCGGCATTTGCAAATCCCTGCATCACCTGGAGCTGTTCGGTCTGTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CCA 72 bp | AGCTCGGTGAGAAGCTCCAGGGAGGACGGCAGGGAGTaGATAGAGTTGTGGGTCAAATCCAGCACTGACAGC | + |
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Preference number: 6 (lower is better) Translates to: SSVRSSREDGRE*IELWVKSSTDS Trigger: GCTGTCAGTGCTGGATTTGACCCACAACTCTATCCACTCCCTGCCGTCCTCCCTGGAGCTTCTCACCGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 72 bp | CACGATTTCCTCGGGCAGCGATTCCAGGAAGTTCTCTaGCAGACCGAACAGCTCCAGGTGATGCAGGGATTT | + |
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Preference number: 6 (lower is better) Translates to: HDFLGQRFQEVL*QTEQLQVMQGF Trigger: AAATCCCTGCATCACCTGGAGCTGTTCGGTCTGTCAGAGAACTTCCTGGAATCGCTGCCCGAGGAAATCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 72 bp | TTGTGGGTCAAATCCAGCACTGACAGCTTGCTGCACTaGCTCAGAGACTCCGGTAAACTCATCAGGTGGTTA | + |
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Preference number: 6 (lower is better) Translates to: LWVKSSTDSLLH*LRDSGKLIRWL Trigger: TAACCACCTGATGAGTTTACCGGAGTCTCTGAGTCAGTGCAGCAAGCTGTCAGTGCTGGATTTGACCCACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CCA 72 bp | TTCTCCTTCAGGTGTTTCCATATGGCTTCATTGCCTTaGTTACACACATATATGGGAGGGTCGACCATGGGG | + |
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Preference number: 6 (lower is better) Translates to: FSFRCFHMASLP*LHTYMGGSTMG Trigger: CCCCATGGTCGACCCTCCCATATATGTGTGTAACCAAGGCAATGAAGCCATATGGAAACACCTGAAGGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 72 bp | GTTCTCCTTCAGGTGTTTCCATATGGCTTCATTGCCTaGGTTACACACATATATGGGAGGGTCGACCATGGG | + |
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Preference number: 6 (lower is better) Translates to: VLLQVFPYGFIA*VTHIYGRVDHG Trigger: CCCATGGTCGACCCTCCCATATATGTGTGTAACCAAGGCAATGAAGCCATATGGAAACACCTGAAGGAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 90 bp | CAGCAGCTCTCTCAAATTTCGAGTACGGCAAATGGCATCTGGGAGTaGCTTAAGAAGATTATGCCGACAGTCAAGAACTTCCAGATTTGG | + |
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Preference number: 6 (lower is better) Translates to: QQLSQISSTANGIWE*LKKIMPTVKNFQIW Trigger: CCAAATCTGGAAGTTCTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAATTTGAGAGAGCTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CCA 72 bp | CAGCTCTCTCAAATTTCGAGTACGGCAAATGGCATCTaGGAGTTGCTTAAGAAGATTATGCCGACAGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: QLSQISSTANGI*ELLKKIMPTVK Trigger: CTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAATTTGAGAGAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 72 bp | TGGTTACACACATATATGGGAGGGTCGACCATGGGGTaGTTCATCAGTGTTAGGACCTTAAGATTTACCAGG | + |
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Preference number: 6 (lower is better) Translates to: WLHTYMGGSTMG*FISVRTLRFTR Trigger: CCTGGTAAATCTTAAGGTCCTAACACTGATGAACAACCCCATGGTCGACCCTCCCATATATGTGTGTAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 72 bp | ATTCTGTTCTCCTTCAGGTGTTTCCATATGGCTTCATaGCCTTGGTTACACACATATATGGGAGGGTCGACC | + |
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Preference number: 6 (lower is better) Translates to: ILFSFRCFHMAS*PWLHTYMGGST Trigger: GGTCGACCCTCCCATATATGTGTGTAACCAAGGCAATGAAGCCATATGGAAACACCTGAAGGAGAACAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 90 bp | ACCTTGGGTAAATGTTCTTGTCTCAGTAGTTCCTTGGTCAGGGTTTaGAAGGTGTCAATTATGTCAAATCTGTGTAGCCGGGGAAGGATG | + |
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Preference number: 6 (lower is better) Translates to: TLGKCSCLSSSLVRV*KVSIMSNLCSRGRM Trigger: CATCCTTCCCCGGCTACACAGATTTGACATAATTGACACCTTCAAAACCCTGACCAAGGAACTACTGAGACAAGAACATTTACCCAAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 72 bp | AGATTTCCTCTGGGAAGGACAAAAGGTCATTTCCTGTaGGCCCGAGTATCTTCAGGTTTGAAAGCAAGCTTA | + |
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Preference number: 6 (lower is better) Translates to: RFPLGRTKGHFL*ARVSSGLKASL Trigger: TAAGCTTGCTTTCAAACCTGAAGATACTCGGGCTCACAGGAAATGACCTTTTGTCCTTCCCAGAGGAAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 72 bp | TTGTTCATCAGTGTTAGGACCTTAAGATTTACCAGGTaGTCAAGGTTCTCTGGGAGGCAGCAGAGTAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: LFISVRTLRFTR*SRFSGRQQSKL Trigger: CAACTTACTCTGCTGCCTCCCAGAGAACCTTGATCACCTGGTAAATCTTAAGGTCCTAACACTGATGAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS GCA 72 bp | CGGCAAATGGCATCTGGGAGTTGCTTAAGAAGATTATaGCGACAGTCAAGAACTTCCAGATTTGGCATTAAC | + |
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Preference number: 6 (lower is better) Translates to: RQMASGSCLRRL*RQSRTSRFGIN Trigger: GTTAATGCCAAATCTGGAAGTTCTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 90 bp | ACCTTGGGTAAATGTTCTTGTCTCAGTAGTTCCTTGGTCAGGGTTTaGAAGGTGTCAATTATGTCAAATCTGTGCATCTGCAGCTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: TLGKCSCLSSSLVRV*KVSIMSNLCICSLA Trigger: TGCCAAGCTGCAGATGCACAGATTTGACATAATTGACACCTTCAAAACCCTGACCAAGGAACTACTGAGACAAGAACATTTACCCAAGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108265.3 |
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| CDS TCA 72 bp | AATGTTCTTGTCTCAGTAGTTCCTTGGTCAGGGTTTTaGAGGTGTCAATTATGTCAAATCTGTGTAGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: NVLVSVVPWSGF*RCQLCQICVAG Trigger: CCCGGCTACACAGATTTGACATAATTGACACCTTCAAAACCCTGACCAAGGAACTACTGAGACAAGAACATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 72 bp | TCTCAAATTTCGAGTACGGCAAATGGCATCTGGGAGTaGCTTAAGAAGATTATGCCGACAGTCAAGAACTTC | + |
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Preference number: 6 (lower is better) Translates to: SQISSTANGIWE*LKKIMPTVKNF Trigger: GAAGTTCTTGACTGTCGGCATAATCTTCTTAAGCAACTCCCAGATGCCATTTGCCGTACTCGAAATTTGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 90 bp | AGATTTGGCATTAACCCCAAGGATGCTGGCAGCTGTTCCAGTCGGTaGTTCTCTATGTATAGTTCCTTAAGATTCATCAATCTCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: RFGINPKDAGSCSSR*FSMYSSLRFINLLM Trigger: CATCAAGAGATTGATGAATCTTAAGGAACTATACATAGAGAACAACCGACTGGAACAGCTGCCAGCATCCTTGGGGTTAATGCCAAATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 72 bp | ATTAACCCCAAGGATGCTGGCAGCTGTTCCAGTCGGTaGTTCTCTATGTATAGTTCCTTAAGATTCATCAAT | + |
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Preference number: 6 (lower is better) Translates to: INPKDAGSCSSR*FSMYSSLRFIN Trigger: ATTGATGAATCTTAAGGAACTATACATAGAGAACAACCGACTGGAACAGCTGCCAGCATCCTTGGGGTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS TCA 72 bp | AATGTTCTTGTCTCAGTAGTTCCTTGGTCAGGGTTTTaGAGGTGTCAATTATGTCAAATCTGTGCATCTGCA | + |
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Preference number: 6 (lower is better) Translates to: NVLVSVVPWSGF*RCQLCQICASA Trigger: TGCAGATGCACAGATTTGACATAATTGACACCTTCAAAACCCTGACCAAGGAACTACTGAGACAAGAACATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108265.3 |
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| CDS CCA 72 bp | TTGATGTTTTCTGGCAAAGATGAAAGCTTGGACCCCTaGTCTTGTCCAATATATAATTTCTCCAGAGATATT | + |
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Preference number: 6 (lower is better) Translates to: LMFSGKDESLDP*SCPIYNFSRDI Trigger: AATATCTCTGGAGAAATTATATATTGGACAAGACCAGGGGTCCAAGCTTTCATCTTTGCCAGAAAACATCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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| CDS CAA 90 bp | TTAAGATTCATCAATCTCTTGATGTTTTCTGGCAAAGATGAAAGCTaGGACCCCTGGTCTTGTCCAATATATAATTTCTCCAGAGATATT | + |
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Preference number: 6 (lower is better) Translates to: LRFINLLMFSGKDES*DPWSCPIYNFSRDI Trigger: AATATCTCTGGAGAAATTATATATTGGACAAGACCAGGGGTCCAAGCTTTCATCTTTGCCAGAAAACATCAAGAGATTGATGAATCTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000108265.3 ENSMUST00000108267.8 ENSMUST00000172350.8 |
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