Pregenerated sensors for LRRD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040367

Ensembl transcript IDs: ENSMUST00000044039.2, ENSMUST00000143027.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATGGAATTCCTGTATTTTTCTCTTCGTTTCTATCAAGCTGGCTTGTaGAGGAAGCTGCTGACTGTTCTGTGTCCTTTGAAGGATTTGCTT	+
Preference number: 5 (lower is better) Translates to: MEFLYFSLRFYQAGL*RKLLTVLCPLKDLL Trigger: AAGCAAATCCTTCAAAGGACACAGAACAGTCAGCAGCTTCCTTCACAAGCCAGCTTGATAGAAACGAAGAGAAAAATACAGGAATTCCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS CCA 90 bp	TCTGAAAATGGAATTCCTGTATTTTTCTCTTCGTTTCTATCAAGCTaGCTTGTGAAGGAAGCTGCTGACTGTTCTGTGTCCTTTGAAGGA	+
Preference number: 5 (lower is better) Translates to: SENGIPVFFSSFLSS*LVKEAADCSVSFEG Trigger: TCCTTCAAAGGACACAGAACAGTCAGCAGCTTCCTTCACAAGCCAGCTTGATAGAAACGAAGAGAAAAATACAGGAATTCCATTTTCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS TCA 90 bp	AAAGTTTGTAGATACCACTGGGCAAAGCTGTCATATTGTTTCCTCTaGGATCTAGGCTCTGTAGAACTTCTAAAGACAGAAAGGATGATG	+
Preference number: 5 (lower is better) Translates to: KVCRYHWAKLSYCFL*DLGSVELLKTERMM Trigger: CATCATCCTTTCTGTCTTTAGAAGTTCTACAGAGCCTAGATCTCAGAGGAAACAATATGACAGCTTTGCCCAGTGGTATCTACAAACTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044039.2
CDS GCA 72 bp	TCTTCAGCCATCTTAGTCTCTGATGACCCAGAGCTCTaGAGACTTTCTTCTATTGACAGTGGGATGATATCT	+
Preference number: 6 (lower is better) Translates to: SSAILVSDDPEL*RLSSIDSGMIS Trigger: AGATATCATCCCACTGTCAATAGAAGAAAGTCTGCAGAGCTCTGGGTCATCAGAGACTAAGATGGCTGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS CCA 72 bp	GGAATTCCTGTATTTTTCTCTTCGTTTCTATCAAGCTaGCTTGTGAAGGAAGCTGCTGACTGTTCTGTGTCC	+
Preference number: 6 (lower is better) Translates to: GIPVFFSSFLSS*LVKEAADCSVS Trigger: GGACACAGAACAGTCAGCAGCTTCCTTCACAAGCCAGCTTGATAGAAACGAAGAGAAAAATACAGGAATTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS TCA 72 bp	CTGTATTTTTCTCTTCGTTTCTATCAAGCTGGCTTGTaGAGGAAGCTGCTGACTGTTCTGTGTCCTTTGAAG	+
Preference number: 6 (lower is better) Translates to: LYFSLRFYQAGL*RKLLTVLCPLK Trigger: CTTCAAAGGACACAGAACAGTCAGCAGCTTCCTTCACAAGCCAGCTTGATAGAAACGAAGAGAAAAATACAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS TCA 72 bp	GAAAATACGGTGAGTTTGTTTCTATTCAACTCTAAATaGAGCAGCTGCTTACTGAACGACATGTCCACAGGG	+
Preference number: 6 (lower is better) Translates to: ENTVSLFLFNSK*SSCLLNDMSTG Trigger: CCCTGTGGACATGTCGTTCAGTAAGCAGCTGCTTCATTTAGAGTTGAATAGAAACAAACTCACCGTATTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044039.2
CDS TCA 72 bp	AGATACCACTGGGCAAAGCTGTCATATTGTTTCCTCTaGGATCTAGGCTCTGTAGAACTTCTAAAGACAGAA	+
Preference number: 6 (lower is better) Translates to: RYHWAKLSYCFL*DLGSVELLKTE Trigger: TTCTGTCTTTAGAAGTTCTACAGAGCCTAGATCTCAGAGGAAACAATATGACAGCTTTGCCCAGTGGTATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044039.2
CDS CAA 72 bp	CTTTCATTTAATGGAGTAGTGGGCCTTACAGGCATGTaGTTTGCTGAGCTTGCCATGTTTAGTTTTTGTTGC	+
Preference number: 6 (lower is better) Translates to: LSFNGVVGLTGM*FAELAMFSFCC Trigger: GCAACAAAAACTAAACATGGCAAGCTCAGCAAACAACATGCCTGTAAGGCCCACTACTCCATTAAATGAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044039.2
CDS CAA 72 bp	AGGTTAAGCAGCCTGAGTTCTTTGAAATTCTCAATTTaGGGTGAAATGGCTTCCAGTTTATTGTCAGCTAGA	+
Preference number: 6 (lower is better) Translates to: RLSSLSSLKFSI*GEMASSLLSAR Trigger: TCTAGCTGACAATAAACTGGAAGCCATTTCACCCAAAATTGAGAATTTCAAAGAACTCAGGCTGCTTAACCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044039.2
CDS CAA 72 bp	ACACCTCTTCTGGAAGTCTTGTTAACTTTTTCCCACTaGTCTGACTTATATTCAGCTCCTCAAGAGTTTGAA	+
Preference number: 6 (lower is better) Translates to: TPLLEVLLTFSH*SDLYSAPQEFE Trigger: TTCAAACTCTTGAGGAGCTGAATATAAGTCAGACAAGTGGGAAAAAGTTAACAAGACTTCCAGAAGAGGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044039.2
CDS CCA 72 bp	TCCATTAAAGATTCGTCCTCTAAATTTCCTCCCAGTTaGAAATTTGACTGGGTAATAATCTTCAGCCATCTT	+
Preference number: 6 (lower is better) Translates to: SIKDSSSKFPPS*KFDWVIIFSHL Trigger: AAGATGGCTGAAGATTATTACCCAGTCAAATTTCCAACTGGGAGGAAATTTAGAGGACGAATCTTTAATGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS CAA 90 bp	CCTTTGAAGGATTTGCTTCATAAATCTGGTTGGAATCTTTACTTTTaGAGTAAGGAGAAGCTTCATCCAAGAGATCTGATATTTCAGATC	+
Preference number: 6 (lower is better) Translates to: PLKDLLHKSGWNLYF*SKEKLHPRDLIFQI Trigger: GATCTGAAATATCAGATCTCTTGGATGAAGCTTCTCCTTACTCAAAAAGTAAAGATTCCAACCAGATTTATGAAGCAAATCCTTCAAAGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044039.2 ENSMUST00000143027.2
CDS CAA 72 bp	TGTCTGACTTATATTCAGCTCCTCAAGAGTTTGAAGTaGGCACAGTTCAACAGGAAAATTTGTGAAAATATT	+
Preference number: 6 (lower is better) Translates to: CLTYIQLLKSLK*AQFNRKICENI Trigger: AATATTTTCACAAATTTTCCTGTTGAACTGTGCCAACTTCAAACTCTTGAGGAGCTGAATATAAGTCAGACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044039.2