RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRRC8A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000007476

Ensembl transcript IDs: ENSMUST00000095078.3, ENSMUST00000113654.8

Found 312 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTCCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTaGTCTGGCTGGACCCAGCTGGCTGTCGCAGTCCTGGGAGAGCTG +
Preference number: 1 (lower is better)
Translates to: CPSGRKGTSPSVPAF*SGWTQLAVAVLGEL
Trigger: CAGCTCTCCCAGGACTGCGACAGCCAGCTGGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGGACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR TCA 90 bp AGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTaGGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAAT +
Preference number: 1 (lower is better)
Translates to: RSKLLFLGLWCWLGL*GRDGLQCEDPDCPN
Trigger: ATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 90 bp CTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTaGAACCCTAAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCT +
Preference number: 1 (lower is better)
Translates to: LNCTVCKPGAQYKLS*NPKTGEPALPVLTS
Trigger: AGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTTAGGGTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 90 bp CCTGGCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTaGTTTGCTCAAGGGGGAAACACCACCCACCCTGAGACTGTAACT +
Preference number: 1 (lower is better)
Translates to: PGPHPKDRKFCSMSC*FAQGGNTTHPETVT
Trigger: AGTTACAGTCTCAGGGTGGGTGGTGTTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGCCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 90 bp CATCCTGGCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTaGTGCTTTGCTCAAGGGGGAAACACCACCCACCCTGAGACTGTA +
Preference number: 1 (lower is better)
Translates to: HPGPHPKDRKFCSMS*CFAQGGNTTHPETV
Trigger: TACAGTCTCAGGGTGGGTGGTGTTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGCCAGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 90 bp CACGGCACTTCTGGACCACGGTCAGGACATATTGGGAAGACATCCTaGCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTG +
Preference number: 1 (lower is better)
Translates to: HGTSGPRSGHIGKTS*PTPQRQEILFNVLL
Trigger: CAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGCCAGGATGTCTTCCCAATATGTCCTGACCGTGGTCCAGAAGTGCCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 90 bp AGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTAGTGTaGAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACA +
Preference number: 1 (lower is better)
Translates to: RPTCNGLLHGCQRLV*SISKGYIHDTTQKT
Trigger: TGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR TCA 90 bp TGGTTGTCAAAGGCTAGTGTGCAGTATTTCCAAGGGTTACATCCATaGCACGACGCAGAAAACACAAATGGACGGAGAGACAGACATAAT +
Preference number: 1 (lower is better)
Translates to: WLSKASVQYFQGLHP*HDAENTNGRRDRHN
Trigger: ATTATGTCTGTCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAGCCTTTGACAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTGGGAGGGGAAGCAGCTaGTCTGGGCTCCTTAACACT +
Preference number: 2 (lower is better)
Translates to: KTGEPALPVLTSHAQSASGRGSS*SGLLNT
Trigger: AGTGTTAAGGAGCCCAGAGCAGCTGCTTCCCCTCCC...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR TCA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTTGTAAGCAGAAGAGGTaGGGGGTGGCACTGAGCAAA +
Preference number: 2 (lower is better)
Translates to: KTGEPALPVLTSHAQSASCKQKR*GVALSK
Trigger: TTTGCTCAGTGCCACCCCTCACCTCTTCTGCTTACA...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTTGGCTGTCGCAGTCCTaGGAGAGCTGGGCTGCCCAT +
Preference number: 2 (lower is better)
Translates to: EAEMASSVKTLIVQILHSWLSQS*ESWAAH
Trigger: ATGGGCAGCCCAGCTCTCCCAGGACTGCGACAGCCA...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCTGTGCGGAGGCTCGTTaGTGCTGCTCCAGGCTGTGC +
Preference number: 2 (lower is better)
Translates to: ASSVKTLIVQILHSETSLCAEAR*CCSRLC
Trigger: GCACAGCCTGGAGCAGCAGCAACGAGCCTCCGCACA...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTAGCAAGTGCCTGTCCTaGGTGTCCATGTCCCAGCGG +
Preference number: 2 (lower is better)
Translates to: EAEMASSVKTLIVQILHSSKCLS*VSMSQR
Trigger: CCGCTGGGACATGGACACCCAGGACAGGCACTTGCT...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR TCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAATGCTGGCTCGGCCTCTaGGGCAGAGATGGCCTCCAG +
Preference number: 2 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKCWLGL*GRDGLQ
Trigger: CTGGAGGCCATCTCTGCCTCAGAGGCCGAGCCAGCA...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAATGGCTGTCGCAGTCCTaGGAGAGCTGGGCTGCCCAT +
Preference number: 2 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQWLSQS*ESWAAH
Trigger: ATGGGCAGCCCAGCTCTCCCAGGACTGCGACAGCCA...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CAA 90 bp CGGCTGGCTCACCCTACCCAACTCTGCCCAAGTCTGGGTGGGCACTaGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCC +
Preference number: 2 (lower is better)
Translates to: RLAHPTQLCPSLGGH*ILSASPKKKKVNTA
Trigger: GGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAAGTGCCCACCCAGACTTGGGCAGAGTTGGGTAGGGTGAGCCAGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTATGTGCGGAGGCTCGTTaGTGCTGCTCCAGGCTGTGC +
Preference number: 2 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLCAEAR*CCSRLC
Trigger: GCACAGCCTGGAGCAGCAGCAACGAGCCTCCGCACA...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR TCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATGCTGGCTCGGCCTCTaGGGCAGAGATGGCCTCCAG +
Preference number: 2 (lower is better)
Translates to: LILSASPKKKKVNTARVLCWLGL*GRDGLQ
Trigger: CTGGAGGCCATCTCTGCCTCAGAGGCCGAGCCAGCA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR TCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTACTGCCCTCCCAGTGCTaGCCTCTCATGCCCAATCTG +
Preference number: 2 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLLPSQC*PLMPNL
Trigger: CAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAG...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTACAGCCCCTCAGTCCCTaGTTTCTGGTCTGGCTGGAC +
Preference number: 2 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLQPLSP*FLVWLD
Trigger: GTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTG...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGCTTTCTGGTCTGGCTaGACCCAGCTGGCTGTCGCA +
Preference number: 2 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCAFWSG*TQLAVA
Trigger: TGCGACAGCCAGCTGGGTCCAGCCAGACCAGAAAGC...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTAGCAAGTGCCTGTCCTaGGTGTCCATGTCCCAGCGG +
Preference number: 2 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCSKCLS*VSMSQR
Trigger: CCGCTGGGACATGGACACCCAGGACAGGCACTTGCT...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGCTAAGTTACTGTTCCTaGGCCTCTGGTGCTGGCTCG +
Preference number: 2 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRLSYCS*ASGAGS
Trigger: CGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAG...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGATTCCACAAGCTTTGCTaGCAGAGCCTAGCCCAGTGC +
Preference number: 2 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERFHKLC*QSLAQC
Trigger: GCACTGGGCTAGGCTCTGGCAGCAAAGCTTGTGGAA...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACCCAGAGCCTTCCTTTTaGCTGACAGCCATGAAAAGG +
Preference number: 2 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNPEPSF*LTAMKR
Trigger: CCTTTTCATGGCTGTCAGCCAAAAGGAAGGCTCTGG...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATCAGTCCCTGCTTTCTaGTCTGGCTGGACCCAGCTG +
Preference number: 2 (lower is better)
Translates to: LILSASPKKKKVNTARVLSVPAF*SGWTQL
Trigger: CAGCTGGGTCCAGCCAGACCAGAAAGCAGGGACTGA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAATTCCACCTGGAGGCCTaGTCTTCCACAAGCTTTGCT +
Preference number: 2 (lower is better)
Translates to: ELSLQVRPTCNGLLHGCQFHLEA*SSTSFA
Trigger: AGCAAAGCTTGTGGAAGACCAGGCCTCCAGGTGGAA...TTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACGAAAAAGGTGAACACTaGCAGGGTGCTAAACACTTC +
Preference number: 2 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNEKGEH*QGAKHF
Trigger: GAAGTGTTTAGCACCCTGGCAGTGTTCACCTTTTTC...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACTTCTGTTCAATGTCTTaGTGCTTTGCTCAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNFCSMS*CFAQGG
Trigger: TCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAA...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTGCTTTCTGGTCTGGCTaGACCCAGCTGGCTGTCGCA +
Preference number: 2 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIAFWSG*TQLAVA
Trigger: TGCGACAGCCAGCTGGGTCCAGCCAGACCAGAAAGC...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGACCAGAGCCTTCCTTTTaGCTGACAGCCATGAAAAGG +
Preference number: 2 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERPEPSF*LTAMKR
Trigger: CCTTTTCATGGCTGTCAGCCAAAAGGAAGGCTCTGG...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTAGGAGCACCGTTCATCTaGGAATTAGCCAGCCTAAGT +
Preference number: 2 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLGAPFI*ELASLS
Trigger: ACTTAGGCTGGCTAATTCCCAGATGAACGGTGCTCC...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCCTGACCCTTCCACCTaGAGGCCTGGTCTTCCACAA +
Preference number: 2 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIPDPST*RPGLPQ
Trigger: TTGTGGAAGACCAGGCCTCCAGGTGGAAGGGTCAGG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGACAGTACAAACTGTCCTaGAACCCTAAAACTGGGGAG +
Preference number: 2 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERQYKLS*NPKTGE
Trigger: CTCCCCAGTTTTAGGGTTCCAGGACAGTTTGTACTG...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGAACAAAAATAAAAGCCTaGCCCAGGAGAGAAGAGCAC +
Preference number: 2 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERTKIKA*PRREEH
Trigger: GTGCTCTTCTCTCCTGGGGCAGGCTTTTATTTTTGT...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAACAGTACAAACTGTCCTaGAACCCTAAAACTGGGGAG +
Preference number: 2 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQQYKLS*NPKTGE
Trigger: CTCCCCAGTTTTAGGGTTCCAGGACAGTTTGTACTG...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CAA 90 bp TTGATATCTGAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATaGCTTCATGGTTGTCAAAGGCTAGTGTGCAGTATTTCCAAGGGT +
Preference number: 2 (lower is better)
Translates to: LISELSLQVRPTCNG*LHGCQRLVCSISKG
Trigger: ACCCTTGGAAATACTGCACACTAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTCAGATATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR GCA 90 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGAGACGCTAAAACGTaGCTTAGTGTCCATGTGATT +
Preference number: 2 (lower is better)
Translates to: ELSLQVRPTCNGLLHGCQRDAKT*LSVHVI
Trigger: AATCACATGGACACTAAGGCACGTTTTAGCGTCTCT...TTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTAGAGCACGGCACTTCTaGACCACGGTCAGGACATAT +
Preference number: 2 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIRARHF*TTVRTY
Trigger: ATATGTCCTGACCGTGGTCCAGAAGTGCCGTGCTCT...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CAA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCGTGTGCGGAGGCTCGTaGCTGCTGCTCCAGGCTGTG +
Preference number: 3 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPVCGGS*LLLQAV
Trigger: CACAGCCTGGAGCAGCAGCAACGAGCCTCCGCACAC...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 72 bp TCCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTaGTTTCTGGTCTGGCTGGACCCAGCTGGCTGTCGC +
Preference number: 3 (lower is better)
Translates to: SQREERDQPLSP*FLVWLDPAGCR
Trigger: GCGACAGCCAGCTGGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CAA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCGTGTGCGGAGGCTCGTaGCTGCTGCTCCAGGCTGTG +
Preference number: 3 (lower is better)
Translates to: PASACPGCPCPSGRKGTSVCGGS*LLLQAV
Trigger: CACAGCCTGGAGCAGCAGCAACGAGCCTCCGCACAC...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 72 bp CCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCAGCTaGCTGTCGCAGTCCTGGGAGAGCTGGGCTGCCCAT +
Preference number: 3 (lower is better)
Translates to: PQSLLSGLAGPS*LSQSWESWAAH
Trigger: ATGGGCAGCCCAGCTCTCCCAGGACTGCGACAGCCAGCTGGGTCCAGCCAGACCAGAAAGCAGGGACTGAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 72 bp GGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTaGTCTGGCTGGACCCAGCTGGCTGTCGCAGTCCTG +
Preference number: 3 (lower is better)
Translates to: GRKGTSPSVPAF*SGWTQLAVAVL
Trigger: CAGGACTGCGACAGCCAGCTGGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR TCA 72 bp TTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTaGGGCAGAGATGGCCTCCAGTGTGAAGACCCTGAT +
Preference number: 3 (lower is better)
Translates to: LLFLGLWCWLGL*GRDGLQCEDPD
Trigger: ATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 72 bp CCTAGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTaGCTCACCCTACCCAACTCTGCCCAAGTCTGGGTG +
Preference number: 3 (lower is better)
Translates to: PSPVPIRQLSYG*LTLPNSAQVWV
Trigger: CACCCAGACTTGGGCAGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 72 bp CTGAGACTAGTCTCAGAGGTTCTGGTCTCCAGCAAGTaGCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAA +
Preference number: 3 (lower is better)
Translates to: LRLVSEVLVSSK*LSWVSMSQREE
Trigger: TTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAACCTCTGAGACTAGTCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 72 bp GCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTaGCCAAGTCTGGGTGGGCACTTGATTCTGTCAGCA +
Preference number: 3 (lower is better)
Translates to: ATVLRLAHPTQL*PSLGGHLILSA
Trigger: TGCTGACAGAATCAAGTGCCCACCCAGACTTGGGCAGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 72 bp ACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTaGAACCCTAAAACTGGGGAGCCTGCCCTCCCAGTG +
Preference number: 3 (lower is better)
Translates to: TVCKPGAQYKLS*NPKTGEPALPV
Trigger: CACTGGGAGGGCAGGCTCCCCAGTTTTAGGGTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CCA 72 bp AAAAGCCTGCCCCAGGAGAGAAGAGCACGGCACTTCTaGACCACGGTCAGGACATATTGGGAAGACATCCTG +
Preference number: 3 (lower is better)
Translates to: KSLPQERRARHF*TTVRTYWEDIL
Trigger: CAGGATGTCTTCCCAATATGTCCTGACCGTGGTCCAGAAGTGCCGTGCTCTTCTCTCCTGGGGCAGGCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR TCA 72 bp AAGGCGAGGACCCTTCTAAGTGGGGACCCTAGTGATTaGTCTAAAGCAGAGTGGCTTACCGCCACTAGACGC +
Preference number: 3 (lower is better)
Translates to: KARTLLSGDPSD*SKAEWLTATRR
Trigger: GCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCACTAGGGTCCCCACTTAGAAGGGTCCTCGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 72 bp CCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTaGTGCTTTGCTCAAGGGGGAAACACCACCCACCCT +
Preference number: 3 (lower is better)
Translates to: PHPKDRKFCSMS*CFAQGGNTTHP
Trigger: AGGGTGGGTGGTGTTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR-3UTR CAA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGATCCAGAGCCTTCCTTTaGGCTGACAGCCATGAAAAG +
Preference number: 3 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERSRAFL*ADSHEK
Trigger: CTTTTCATGGCTGTCAGCCAAAAGGAAGGCTCTGGA...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR TCA 72 bp AAGGCTAGTGTGCAGTATTTCCAAGGGTTACATCCATaGCACGACGCAGAAAACACAAATGGACGGAGAGAC +
Preference number: 3 (lower is better)
Translates to: KASVQYFQGLHP*HDAENTNGRRD
Trigger: GTCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 72 bp TGTAACGGATTGCTTCATGGTTGTCAAAGGCTAGTGTaGAGTATTTCCAAGGGTTACATCCATGACACGACG +
Preference number: 3 (lower is better)
Translates to: CNGLLHGCQRLV*SISKGYIHDTT
Trigger: CGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAGCCTTTGACAACCATGAAGCAATCCGTTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR GCA 72 bp ACAGACATAATCATTAAGACAAGAGACGCTAAAACGTaGCTTAGTGTCCATGTGATTGATCTAAGGCGAGGA +
Preference number: 3 (lower is better)
Translates to: TDIIIKTRDAKT*LSVHVIDLRRG
Trigger: TCCTCGCCTTAGATCAATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGCCAGGCCGCTGCGCTTaGGTAGGGGGCACTCTCCCA +
Preference number: 4 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWPGRCA*VGGTLP
Trigger: TGGGAGAGTGCCCCCTACTCAAGCGCAGCGGCCTGG...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCCCAGGCCGCTGCGCTTaGGTAGGGGGCACTCTCCCA +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPPGRCA*VGGTLP
Trigger: TGGGAGAGTGCCCCCTACTCAAGCGCAGCGGCCTGG...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCGCACGCCCACATCCGTaGCCACCTGCGGCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: PASACPGCPCPSGRKGTSARPHP*PPAAAC
Trigger: GCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGC...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCCCGACAGGGCCCGTGTaGTCCACGGTGAGTCGAAGC +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPPTGPV*STVSRS
Trigger: GCTTCGACTCACCGTGGACCACACGGGCCCTGTCGG...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGTTGAGGCCTGTGAGCTaGGCGATGCTGGGCGGGATG +
Preference number: 4 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWLRPVS*AMLGGM
Trigger: CATCCCGCCCAGCATCGCCCAGCTCACAGGCCTCAA...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCAGGCAGGTGAGGCGGTaGAGGTGCTGGAAGCTGATG +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPRQVRR*RCWKLM
Trigger: CATCAGCTTCCAGCACCTGCACCGCCTCACCTGCCT...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGCGATCTGCGTCAGGTTaGTCAGCTCGCCCACTCTCG +
Preference number: 4 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWRSASG*SARPLS
Trigger: CGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCG...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCGCGTCCACTCGTTGTTaGGGTTCAGCTGGCGCAGCT +
Preference number: 4 (lower is better)
Translates to: PASACPGCPCPSGRKGTSASTRC*GSAGAA
Trigger: AGCTGCGCCAGCTGAACCTCAACAACGAGTGGACGC...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCCCCGCAGCCCGTCAATaGCGATGTAGCGGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPPAARQ*RCSGCS
Trigger: AGAACAACCGCTACATCGTCATTGACGGGCTGCGGG...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAACTCTGGGCTGGAGGCTaGCCAGCCCCGGAAGGAGTC +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKLWAGG*PAPEGV
Trigger: GACTCCTTCCGGGGCTGGGCAGCCTCCAGCCCAGAG...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCGCGTCGGCAGGACTGTaGAGTTGGGGTAAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: PASACPGCPCPSGRKGTSASAGL*SWGKWA
Trigger: AGCCCACTTACCCCAACTCCACAGTCCTGCCGACGC...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCCAGGTGGCAGTGTGCTaGACAAGTCCTCTTCCACCA +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPQVAVC*TSPLPP
Trigger: TGGTGGAAGAGGACTTGTTCAGCACACTGCCACCTG...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTCGTGACTTGGTCCGCTaGAGCATGGGCACGGTGGCC +
Preference number: 4 (lower is better)
Translates to: KTGEPALPVLTSHAQSASRDLVR*SMGTVA
Trigger: GGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACG...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCTCCGTGAACTTGATGTaGAGGGCCCGCAGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: PASACPGCPCPSGRKGTSSVNLM*RARRFS
Trigger: GGAGAACCTGCGGGCCCTGCACATCAAGTTCACGGA...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCGTAGCGGTTGTTCTCTaGACTCAGGTTGCCCGTCAG +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPVAVVL*TQVARQ
Trigger: CTGACGGGCAACCTGAGTGCAGAGAACAACCGCTAC...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCACATCCGTGACCACCTaGGGCAGCTTGCTCAGGTTG +
Preference number: 4 (lower is better)
Translates to: PASACPGCPCPSGRKGTSTSVTT*GSLLRL
Trigger: CAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGT...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGCATCTTGCTGAAGGCTaGCTTGGGGTCACTCTCCTC +
Preference number: 4 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWHLAEG*LGVTLL
Trigger: GAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATG...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGCACAGCGGTAGGTaGGGTAGCCTGTCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKGHSGR*GSLSGS
Trigger: AGAGCCTGACAGGCTACCGCACCTACCGCTGTGCCC...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCCAGGATCCGGTATGCTaGCTGTGTGTCCGCAAAGTA +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPQDPVC*LCVRKV
Trigger: TACTTTGCGGACACACAGCCAGCATACCGGATCCTG...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTTGGTCCGCTGCAGCATaGGCACGGTGGCCTCCACAT +
Preference number: 4 (lower is better)
Translates to: KTGEPALPVLTSHAQSASWSAAA*ARWPPH
Trigger: ATGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCA...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCCTCCTTCACCTCAGGTaGCAGTGTGCTGAACAAGTC +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPLLHLR*QCAEQV
Trigger: GACTTGTTCAGCACACTGCCACCTGAGGTGAAGGAG...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGCTCCTTCACCTCAGGTaGCAGTGTGCTGAACAAGTC +
Preference number: 4 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWLLHLR*QCAEQV
Trigger: GACTTGTTCAGCACACTGCCACCTGAGGTGAAGGAG...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGGGCGCTCGAGGTTGGTaGGGTTGCCGATCTGGATGG +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASEGARGW*GCRSGW
Trigger: CCATCCAGATCGGCAACCTCACCAACCTCGAGCGCC...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGACAGCTTCTGCAGGTaGACGCCCACATCCGTGACC +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKDSFCR*TPTSVT
Trigger: GGTCACGGATGTGGGCGTGCACCTGCAGAAGCTGTC...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTCGAACGAGTACTTCTTaGGGGAGCGCCGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSRTSTS*GSAAAS
Trigger: GGATGCTGCGGCGCTCCCTCAAGAAGTACTCGTTCG...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGGCGTCCACTCGTTGTTaGGGTTCAGCTGGCGCAGCT +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASEASTRC*GSAGAA
Trigger: AGCTGCGCCAGCTGAACCTCAACAACGAGTGGACGC...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGCACGCCCACATCCGTaGCCACCTGCGGCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: EAEMASSVKTLIVQILHSARPHP*PPAAAC
Trigger: GCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGC...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAACGGTCCACGATGCCCTaGTCAATCCGTGACTTGGTC +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKRSTMP*SIRDLV
Trigger: GACCAAGTCACGGATTGAGCAGGGCATCGTGGACCG...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAATCCGTGAACTTGATGTaGAGGGCCCGCAGGTTCTCC +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKSVNLM*RARRFS
Trigger: GGAGAACCTGCGGGCCCTGCACATCAAGTTCACGGA...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGCGATCTGCGTCAGGTTaGTCAGCTCGCCCACTCTCG +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASERSASG*SARPLS
Trigger: CGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCG...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGCAGCAATCATCAGCATaGCGATGGAGATGTAATCAG +
Preference number: 4 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWQQSSA*RWRCNQ
Trigger: CTGATTACATCTCCATCGTCATGCTGATGATTGCTG...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAATCATCTTGTCCTGGGTaGCTTGCAGCGTCCCTCCAA +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKSSCPG*LAASLQ
Trigger: TTGGAGGGACGCTGCAAGTCACCCAGGACAAGATGA...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTACCCGTTCATCTTGCTaGAGGCTGGCTTGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSTRSSC*RLAWGH
Trigger: GTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGT...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTCCTGGGCGTTCTTGGTaGGGCGCTGGCGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: EAEMASSVKTLIVQILHSPGRSW*GAGAAC
Trigger: ACAAGCTGCGCCAGCGCCTCACCAAGAACGCCCAGG...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCGCTGATGTAGAAGGATaGCAAGATCTTGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPADVEG*QDLEER
Trigger: ACGCTCTTCAAGATCTTGGCATCCTTCTACATCAGC...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCTTCAGGTCAATCTCCTaGAGGTTGTGGAGGCTAAAG +
Preference number: 4 (lower is better)
Translates to: PASACPGCPCPSGRKGTSFRSIS*RLWRLK
Trigger: CTTTAGCCTCCACAACCTGCAGGAGATTGACCTGAA...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTAGGCTAAAGATGGAGTaGGGGATGCGCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSRLKME*GMRSRS
Trigger: TGACCTGGAGCGCATCCCTCACTCCATCTTTAGCCT...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGGTAGCGGTTGTTCTCTaGACTCAGGTTGCCCGTCAG +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASEVAVVL*TQVARQ
Trigger: CTGACGGGCAACCTGAGTGCAGAGAACAACCGCTAC...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTTTGAGGCCTGTGAGCTaGGCGATGCTGGGCGGGATG +
Preference number: 4 (lower is better)
Translates to: EAEMASSVKTLIVQILHSLRPVS*AMLGGM
Trigger: CATCCCGCCCAGCATCGCCCAGCTCACAGGCCTCAA...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAATGGTGCGTGGAAACTTaGACCAGAAGTTGCTACAGG +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKWCVET*TRSCYR
Trigger: CCTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCA...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTACTCTGGGCTGGAGGCTaGCCAGCCCCGGAAGGAGTC +
Preference number: 4 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLLWAGG*PAPEGV
Trigger: GACTCCTTCCGGGGCTGGGCAGCCTCCAGCCCAGAG...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGACCTTGATGATGGTCTaGCGCATGTACAGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASETLMMV*RMYRRY
Trigger: GTACCGCCTGTACATGCGGCAGACCATCATCAAGGT...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTGGATGTCACTGTAGCTaGTCTCCTCTCGGATCGACT +
Preference number: 4 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSGCHCS*SPLGST
Trigger: AGTCGATCCGAGAGGAGAGCAGCTACAGTGACATCC...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGCAGGATCCGGTATGCTaGCTGTGTGTCCGCAAAGTA +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASEQDPVC*LCVRKV
Trigger: TACTTTGCGGACACACAGCCAGCATACCGGATCCTG...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAACCTGGGCGTTCTTGGTaGGGCGCTGGCGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKPGRSW*GAGAAC
Trigger: ACAAGCTGCGCCAGCGCCTCACCAAGAACGCCCAGG...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTCGGTCCACGATGCCCTaGTCAATCCGTGACTTGGTC +
Preference number: 4 (lower is better)
Translates to: EAEMASSVKTLIVQILHSRSTMP*SIRDLV
Trigger: GACCAAGTCACGGATTGAGCAGGGCATCGTGGACCG...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACCCAGGTAGCGCAGCTTaGGGCAGTAGAAGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNPGSAA*GSRRAG
Trigger: CCCAGCTCTTCTACTGCCGCAAGCTGCGCTACCTGG...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACCCCCGAAGCTCGATCTaGGTCAGGTTGGTCAGCTCG +
Preference number: 4 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNPRSSI*VRLVSS
Trigger: CGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGG...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCGCAGGACTGTGGAGTTaGGGTAAGTGGGCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: ASSVKTLIVQILHSETSLAGLWS*GKWALG
Trigger: GCCCAGAGCCCACTTACCCCAACTCCACAGTCCTGC...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACGCGTCGGCAGGACTGTaGAGTTGGGGTAAGTGGGCT +
Preference number: 4 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNASAGL*SWGKWA
Trigger: AGCCCACTTACCCCAACTCCACAGTCCTGCCGACGC...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTCCGACAGGGCCCGTGTaGTCCACGGTGAGTCGAAGC +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCPTGPV*STVSRS
Trigger: GCTTCGACTCACCGTGGACCACACGGGCCCTGTCGG...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGCCGTGTGGTCCACGGTaGGTCGAAGCACTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: AHTPKTGNSVQCLAALLKPCGPR*VEALEQ
Trigger: CTGCTCAAGTGCTTCGACTCACCGTGGACCACACGG...CTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGGCGCTCGAGGTTGGTaGGGTTGCCGATCTGGATGG +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCGARGW*GCRSGW
Trigger: CCATCCAGATCGGCAACCTCACCAACCTCGAGCGCC...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AAATACTGCACTCTGAGACTAGTCTCAGAGGTTCTGGTCTCCAGCAAGTGCCTGTCTCTGCACTCAGGTTaGCCGTCAGGTGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: KYCTLRLVSEVLVSSKCLSLHSG*PSGAAP
Trigger: AGGAGCTGCACCTGACGGGCAACCTGAGTGCAGAGA...CAGGCACTTGCTGGAGACCAGAACCTCTGAGACTAGTCTCAGAGTGCAGTATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGACAGCTTCTGCAGGTaGACGCCCACATCCGTGACC +
Preference number: 4 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRDSFCR*TPTSVT
Trigger: GGTCACGGATGTGGGCGTGCACCTGCAGAAGCTGTC...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCCTCGAGGGCAGCGACTaGAGTACATTGTTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: ASSVKTLIVQILHSETSLLEGSD*STLLPR
Trigger: CCTGGGCAACAATGTACTGCAGTCGCTGCCCTCGAG...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTAGGCATTCCAGCCGGTTaGCCCGAAGCTCGATCTGCG +
Preference number: 4 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLGIPAG*PEARSA
Trigger: CGCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCC...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTCTTCGAACTGGTGCGTaGAAACTTGAACCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: KTGEPALPVLTSHAQSASLRTGA*KLEPEV
Trigger: AACTTCTGGTTCAAGTTTCCACGCACCAGTTCGAAG...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTTGGTCCGCTGCAGCATaGGCACGGTGGCCTCCACAT +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCWSAAA*ARWPPH
Trigger: ATGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCA...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGTTGTTGAGGTTCAGCTaGCGCAGCTTGTTTTCACTC +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASELLRFS*RSLFSL
Trigger: GAGTGAAAACAAGCTGCGCCAGCTGAACCTCAACAA...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTATCTTGGCTGCCGTGTaGTACAGCCACAGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: EAEMASSVKTLIVQILHSILAAV*YSHSSL
Trigger: CAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGAT...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACTACAGGCCAGGAAGATaGGGGTGTGCAGAAGCACGA +
Preference number: 4 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNYRPGR*GCAEAR
Trigger: TCGTGCTTCTGCACACCCTCATCTTCCTGGCCTGTA...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGACCCGTTCATCTTGCTaGAGGCTGGCTTGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRTRSSC*RLAWGH
Trigger: GTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGT...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGCCCTGCTCAATCCGTaGCTTGGTCCGCTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCALLNP*LGPLQH
Trigger: ATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGC...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAACGAACGAGTACTTCTTaGGGGAGCGCCGCAGCATCC +
Preference number: 4 (lower is better)
Translates to: ELSLQVRPTCNGLLHGCQRTSTS*GSAAAS
Trigger: GGATGCTGCGGCGCTCCCTCAAGAAGTACTCGTTCG...TTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGAACAGGGCCTTCGCCTaGTCCCCTTCCTTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: AHTPKTGNSVQCLAALLKNRAFA*SPSFLS
Trigger: GGACAAGAAGGAAGGGGAGCAGGCGAAGGCCCTGTT...CTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAAACAGGGCCTTCGCCTaGTCCCCTTCCTTCTTGTCC +
Preference number: 4 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQNRAFA*SPSFLS
Trigger: GGACAAGAAGGAAGGGGAGCAGGCGAAGGCCCTGTT...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGGATGTCACTGTAGCTaGTCTCCTCTCGGATCGACT +
Preference number: 4 (lower is better)
Translates to: EAEMASSVKTLIVQILHSGCHCS*SPLGST
Trigger: AGTCGATCCGAGAGGAGAGCAGCTACAGTGACATCC...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTAAGGTTGCCCGTCAGGTaGAGCTCCTCCAGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLRLPVR*SSSSVF
Trigger: GAAGACGCTGGAGGAGCTGCACCTGACGGGCAACCT...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAAAGGTTGCCCGTCAGGTaGAGCTCCTCCAGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKRLPVR*SSSSVF
Trigger: GAAGACGCTGGAGGAGCTGCACCTGACGGGCAACCT...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAACATCCGTGACCACCTaGGGCAGCTTGCTCAGGTTG +
Preference number: 4 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQTSVTT*GSLLRL
Trigger: CAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGT...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTCCAGGTAGCGCAGCTTaGGGCAGTAGAAGAGCTGGG +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCPGSAA*GSRRAG
Trigger: CCCAGCTCTTCTACTGCCGCAAGCTGCGCTACCTGG...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGAGGTTCTGGAGGTTCTaGAGGAGGCCAATGTCGGCG +
Preference number: 4 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRRFWRF*RRPMSA
Trigger: CGCCGACATTGGCCTCCTGCAGAACCTCCAGAACCT...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAGGCATTCCAGCCGGTTaGCCCGAAGCTCGATCTGCG +
Preference number: 4 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQGIPAG*PEARSA
Trigger: CGCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCC...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGCTTCGAACTGGTGCGTaGAAACTTGAACCAGAAGTT +
Preference number: 4 (lower is better)
Translates to: YPDLSYCSWASGAGSASELRTGA*KLEPEV
Trigger: AACTTCTGGTTCAAGTTTCCACGCACCAGTTCGAAG...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGCTCAATCCGTGACTTaGTCCGCTGCAGCATGGGCA +
Preference number: 4 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRAQSVT*SAAAWA
Trigger: TGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGC...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTCGATGCTGGGCGGGATaGTCACGTCGGGTATCAGCT +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCRCWAG*SRRVSA
Trigger: AGCTGATACCCGACGTGACCATCCCGCCCAGCATCG...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAAGTAGAAGAGCTGGGTaGGGATTTTCTCGATTTTGT +
Preference number: 4 (lower is better)
Translates to: FWSPASACPGCPCPSGRKSRRAG*GFSRFC
Trigger: ACAAAATCGAGAAAATCCCCACCCAGCTCTTCTACT...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACTGCAGGAGTCTTTGGTaGCCCACTTACAAGGTAGGC +
Preference number: 4 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNCRSLW*PTYKVG
Trigger: GCCTACCTTGTAAGTGGGTCACCAAAGACTCCTGCA...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAGCCCTGCTCAATCCGTaGCTTGGTCCGCTGCAGCAT +
Preference number: 4 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQALLNP*LGPLQH
Trigger: ATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGC...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTACCCGCAGCCCGTCAATaGCGATGTAGCGGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLPAARQ*RCSGCS
Trigger: AGAACAACCGCTACATCGTCATTGACGGGCTGCGGG...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTTCAGGTTGTTGTGGCTaGGGTCCAGGTAGCGCAGCT +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCSGCCG*GPGSAA
Trigger: AGCTGCGCTACCTGGACCTCAGCCACAACAACCTGA...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTAGGGCACAGCGGTAGGTaGGGTAGCCTGTCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLGHSGR*GSLSGS
Trigger: AGAGCCTGACAGGCTACCGCACCTACCGCTGTGCCC...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGTTCTGGAGGTTCTaGAGGAGGCCAATGTCGGCG +
Preference number: 4 (lower is better)
Translates to: ELSLQVRPTCNGLLHGCQRFWRF*RRPMSA
Trigger: CGCCGACATTGGCCTCCTGCAGAACCTCCAGAACCT...TTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAACTCGAGGGCAGCGACTaGAGTACATTGTTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKLEGSD*STLLPR
Trigger: CCTGGGCAACAATGTACTGCAGTCGCTGCCCTCGAG...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp AAATACTGCACTCTGAGACTAGTCTCAGAGGTTCTGGTCTCCAGCAAGTGCCTGCAGATCATCTTGTCCTaGGTGACTTGCAGCGTCCCT +
Preference number: 4 (lower is better)
Translates to: KYCTLRLVSEVLVSSKCLQIILS*VTCSVP
Trigger: AGGGACGCTGCAAGTCACCCAGGACAAGATGATCTG...CAGGCACTTGCTGGAGACCAGAACCTCTGAGACTAGTCTCAGAGTGCAGTATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGCATCTTGCTGAAGGCTaGCTTGGGGTCACTCTCCTC +
Preference number: 4 (lower is better)
Translates to: AHTPKTGNSVQCLAALLKHLAEG*LGVTLL
Trigger: GAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATG...CTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAATCATCTTGTCCTGGGTaGCTTGCAGCGTCCCTCCAA +
Preference number: 4 (lower is better)
Translates to: ELSLQVRPTCNGLLHGCQSSCPG*LAASLQ
Trigger: TTGGAGGGACGCTGCAAGTCACCCAGGACAAGATGA...TTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCGATCTAGGTCATACTTaGTACCTGTGGGGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: ASSVKTLIVQILHSETSLDLGHT*YLWGLC
Trigger: ACACAGGCCCCACAGGTATCAAGTATGACCTAGATC...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAATACAGGCCAGGAAGATaGGGGTGTGCAGAAGCACGA +
Preference number: 4 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKYRPGR*GCAEAR
Trigger: TCGTGCTTCTGCACACCCTCATCTTCCTGGCCTGTA...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAATGGTGCCCTCATTGTTaGTGGACAGCTTCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQWCPHC*WTASAG
Trigger: ACCTGCAGAAGCTGTCCATCAACAATGAGGGCACCA...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTAAGGCTAAAGATGGAGTaGGGGATGCGCTCCAGGTCA +
Preference number: 4 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLRLKME*GMRSRS
Trigger: TGACCTGGAGCGCATCCCTCACTCCATCTTTAGCCT...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAATCAGGTTGTTGTGGCTaGGGTCCAGGTAGCGCAGCT +
Preference number: 4 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQSGCCG*GPGSAA
Trigger: AGCTGCGCTACCTGGACCTCAGCCACAACAACCTGA...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAACAGGTGGCAGTGTGCTaGACAAGTCCTCTTCCACCA +
Preference number: 4 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKQVAVC*TSPLPP
Trigger: TGGTGGAAGAGGACTTGTTCAGCACACTGCCACCTG...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGATTGATGGACAGCTTCTaGAGGTGCACGCCCACATCC +
Preference number: 4 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERLMDSF*RCTPTS
Trigger: GGATGTGGGCGTGCACCTGCAGAAGCTGTCCATCAA...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTAAGGCAGGTGAGGCGGTaGAGGTGCTGGAAGCTGATG +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLRQVRR*RCWKLM
Trigger: CATCAGCTTCCAGCACCTGCACCGCCTCACCTGCCT...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTACGATGCTGGGCGGGATaGTCACGTCGGGTATCAGCT +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLRCWAG*SRRVSA
Trigger: AGCTGATACCCGACGTGACCATCCCGCCCAGCATCG...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAGGTTGCCGATCTGGATaGGGATGTAGGCAATGTGGT +
Preference number: 4 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQGCRSG*GCRQCG
Trigger: ACCACATTGCCTACATCCCCATCCAGATCGGCAACC...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CAA 72 bp CAGGGTGCTAAACACTTCCCACAGAGCCGGACCTTCTaGGGAATGTGTAAGTTATCTGGAGGGAAAAGATGG +
Preference number: 4 (lower is better)
Translates to: QGAKHFPQSRTF*GMCKLSGGKRW
Trigger: CCATCTTTTCCCTCCAGATAACTTACACATTCCCAAGAAGGTCCGGCTCTGTGGGAAGTGTTTAGCACCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CAA 72 bp CACCCTACCCAACTCTGCCCAAGTCTGGGTGGGCACTaGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTG +
Preference number: 4 (lower is better)
Translates to: HPTQLCPSLGGH*ILSASPKKKKV
Trigger: CACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAAGTGCCCACCCAGACTTGGGCAGAGTTGGGTAGGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGATCTAGGTCATACTTaGTACCTGTGGGGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: AHTPKTGNSVQCLAALLKDLGHT*YLWGLC
Trigger: ACACAGGCCCCACAGGTATCAAGTATGACCTAGATC...CTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAATGGTGCGTGGAAACTTaGACCAGAAGTTGCTACAGG +
Preference number: 4 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQWCVET*TRSCYR
Trigger: CCTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCA...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTCTCGCTGACTGTAGATaGCTTCTTGTCCATGGACCC +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCLADCR*LLVHGP
Trigger: GGGTCCATGGACAAGAAGTCATCTACAGTCAGCGAG...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGATGGTGCCCTCATTGTTaGTGGACAGCTTCTGCAGGT +
Preference number: 4 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERWCPHC*WTASAG
Trigger: ACCTGCAGAAGCTGTCCATCAACAATGAGGGCACCA...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTACTTCAGGATCCGGTATaGTGGCTGTGTGTCCGCAAA +
Preference number: 4 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLLQDPV*WLCVRK
Trigger: TTTGCGGACACACAGCCAGCATACCGGATCCTGAAG...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTACCGATCGGTCCACGATaGCCTGCTCAATCCGTGACT +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLPIGPR*PAQSVT
Trigger: AGTCACGGATTGAGCAGGGCATCGTGGACCGATCGG...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATCTCTGCACTCAGGTTaGCCGTCAGGTGCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLSLHSG*PSGAAP
Trigger: AGGAGCTGCACCTGACGGGCAACCTGAGTGCAGAGA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACTTCAGGTCAATCTCCTaGAGGTTGTGGAGGCTAAAG +
Preference number: 4 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNFRSIS*RLWRLK
Trigger: CTTTAGCCTCCACAACCTGCAGGAGATTGACCTGAA...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTAGCTCAATCCGTGACTTaGTCCGCTGCAGCATGGGCA +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLAQSVT*SAAAWA
Trigger: TGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGC...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGAGGTTGCCGATCTGGATaGGGATGTAGGCAATGTGGT +
Preference number: 4 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERGCRSG*GCRQCG
Trigger: ACCACATTGCCTACATCCCCATCCAGATCGGCAACC...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCCAGCAATCATCAGCATaGCGATGGAGATGTAATCAG +
Preference number: 4 (lower is better)
Translates to: ASSVKTLIVQILHSETSLQQSSA*RWRCNQ
Trigger: CTGATTACATCTCCATCGTCATGCTGATGATTGCTG...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCCGTGTGGTCCACGGTaGGTCGAAGCACTTGAGCAG +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIPCGPR*VEALEQ
Trigger: CTGCTCAAGTGCTTCGACTCACCGTGGACCACACGG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAATCTCCTCAATGGTCTTaGGGTTGTTGTCCTTCAGGT +
Preference number: 4 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQSPQWS*GCCPSG
Trigger: ACCTGAAGGACAACAACCTCAAGACCATTGAGGAGA...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATTGATGGACAGCTTCTaGAGGTGCACGCCCACATCC +
Preference number: 4 (lower is better)
Translates to: LILSASPKKKKVNTARVLLMDSF*RCTPTS
Trigger: GGATGTGGGCGTGCACCTGCAGAAGCTGTCCATCAA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCCCCGAAGCTCGATCTaGGTCAGGTTGGTCAGCTCG +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIPRSSI*VRLVSS
Trigger: CGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAACAGATCATCTTGTCCTaGGTGACTTGCAGCGTCCCT +
Preference number: 4 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQQIILS*VTCSVP
Trigger: AGGGACGCTGCAAGTCACCCAGGACAAGATGATCTG...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGATCTCCTCAATGGTCTTaGGGTTGTTGTCCTTCAGGT +
Preference number: 4 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERSPQWS*GCCPSG
Trigger: ACCTGAAGGACAACAACCTCAAGACCATTGAGGAGA...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCCGATCGGTCCACGATaGCCTGCTCAATCCGTGACT +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIPIGPR*PAQSVT
Trigger: AGTCACGGATTGAGCAGGGCATCGTGGACCGATCGG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTAGTCCACGTCGAACTTaGTGTTGTGCACATAGTAGA +
Preference number: 4 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCSPRRT*CCAHSR
Trigger: TCTACTATGTGCACAACATCAAGTTCGACGTGGACT...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAAGCTGATGTAGAAGGATaGCAAGATCTTGAAGAGCGT +
Preference number: 4 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKADVEG*QDLEER
Trigger: ACGCTCTTCAAGATCTTGGCATCCTTCTACATCAGC...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTATCTTGGCTGCCGTGTaGTACAGCCACAGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIILAAV*YSHSSL
Trigger: CAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGAT...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
3UTR CAA 72 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATaGCTTCATGGTTGTCAAAGGCTAGTGTGCAGTATT +
Preference number: 4 (lower is better)
Translates to: ELSLQVRPTCNG*LHGCQRLVCSI
Trigger: AATACTGCACACTAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR TCA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAAGTCCACGTCGAACTTaGTGTTGTGCACATAGTAGA +
Preference number: 4 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQSPRRT*CCAHSR
Trigger: TCTACTATGTGCACAACATCAAGTTCGACGTGGACT...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCTTCAGGATCCGGTATaGTGGCTGTGTGTCCGCAAA +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVILQDPV*WLCVRK
Trigger: TTTGCGGACACACAGCCAGCATACCGGATCCTGAAG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR GCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTACCTTGATGATGGTCTaGCGCATGTACAGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVITLMMV*RMYRRY
Trigger: GTACCGCCTGTACATGCGGCAGACCATCATCAAGGT...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CCA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTAGTAGAAGAGCTGGGTaGGGATTTTCTCGATTTTGT +
Preference number: 4 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVISRRAG*GFSRFC
Trigger: ACAAAATCGAGAAAATCCCCACCCAGCTCTTCTACT...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCAGGCGCTGGCGCAGCTaGTCCAGCGTCCACTCGTTG +
Preference number: 5 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPRRWRS*SSVHSL
Trigger: CAACGAGTGGACGCTGGACAAGCTGCGCCAGCGCCT...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 90 bp TCCCGCAGGAAGGCCAGGGCAGGAGCCTCGATCTTGGCTGCCGTGTaGTACAGCCACAGCTCCTTGAGGCCTGTGAGCTGGGCGATGCTG +
Preference number: 5 (lower is better)
Translates to: SRRKARAGASILAAV*YSHSSLRPVSWAML
Trigger: CAGCATCGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGATCGAGGCTCCTGCCCTGGCCTTCCTGCGGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCTTGTCCTGGGCGTTCTaGGTGAGGCGCTGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: PASACPGCPCPSGRKGTSLSWAF*VRRWRS
Trigger: GCTGCGCCAGCGCCTCACCAAGAACGCCCAGGACAA...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 90 bp CAGTACGCCCGTCTCCGATCGGTCCACGATGCCCTGCTCAATCCGTaGCTTGGTCCGCTGCAGCATGGGCACGGTGGCCTCCACATCCTC +
Preference number: 5 (lower is better)
Translates to: QYARLRSVHDALLNP*LGPLQHGHGGLHIL
Trigger: GAGGATGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACGGGCGTACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 90 bp TTGGCTGCCGTGTGGTACAGCCACAGCTCCTTGAGGCCTGTGAGCTaGGCGATGCTGGGCGGGATGGTCACGTCGGGTATCAGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: LAAVWYSHSSLRPVS*AMLGGMVTSGISSS
Trigger: GCTGGAGCTGATACCCGACGTGACCATCCCGCCCAGCATCGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTACCACACGGCAGCCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGCCCCGGAAGGAGTCGTaGCAGGAGTCTTTGGTGACC +
Preference number: 5 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWPRKES*QESLVT
Trigger: GGTCACCAAAGACTCCTGCAACGACTCCTTCCGGGG...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGTTGAGTCGCAGCACCTaGAGGCGTTTGAGCTCCCGC +
Preference number: 5 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWLSRST*RRLSSR
Trigger: GCGGGAGCTCAAACGCCTCAAGGTGCTGCGACTCAA...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 90 bp GCAGGAGGCCAATGTCGGCGGGGAGGAAGGTCAGGTTGTTGTGGCTaGGGTCCAGGTAGCGCAGCTTGCGGCAGTAGAAGAGCTGGGTGG +
Preference number: 5 (lower is better)
Translates to: AGGQCRRGGRSGCCG*GPGSAACGSRRAGW
Trigger: CCACCCAGCTCTTCTACTGCCGCAAGCTGCGCTACCTGGACCTCAGCCACAACAACCTGACCTTCCTCCCCGCCGACATTGGCCTCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp TCCTTCTTGTCCAGTACGCCCGTCTCCGATCGGTCCACGATGCCCTaGTCAATCCGTGACTTGGTCCGCTGCAGCATGGGCACGGTGGCC +
Preference number: 5 (lower is better)
Translates to: SFLSSTPVSDRSTMP*SIRDLVRCSMGTVA
Trigger: GGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACGGGCGTACTGGACAAGAAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp CCCCTTCCTTCTTGTCCAGTACGCCCGTCTCCGATCGGTCCACGATaGCCTGCTCAATCCGTGACTTGGTCCGCTGCAGCATGGGCACGG +
Preference number: 5 (lower is better)
Translates to: PLPSCPVRPSPIGPR*PAQSVTWSAAAWAR
Trigger: CCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACGGGCGTACTGGACAAGAAGGAAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCAAGGATGCCAAGATCTaGAAGAGCGTGGCCAGGGGG +
Preference number: 5 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPKDAKI*KSVARG
Trigger: CCCCCTGGCCACGCTCTTCAAGATCTTGGCATCCTT...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCTTCTCTGCACTCAGGTaGCCCGTCAGGTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: PASACPGCPCPSGRKGTSFSALR*PVRCSS
Trigger: GGAGCTGCACCTGACGGGCAACCTGAGTGCAGAGAA...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 90 bp GCAGGCATTCCAGCCGGTTGCCCCGAAGCTCGATCTGCGTCAGGTTaGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGCAGTACATTGT +
Preference number: 5 (lower is better)
Translates to: AGIPAGCPEARSASG*SARPLSRAATAVHC
Trigger: ACAATGTACTGCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCTCGAACGAGTACTTCTaGAGGGAGCGCCGCAGCATC +
Preference number: 5 (lower is better)
Translates to: PASACPGCPCPSGRKGTSSNEYF*RERRSI
Trigger: GATGCTGCGGCGCTCCCTCAAGAAGTACTCGTTCGA...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCACCACCTGCGGCAGCTaGCTCAGGTTGCTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: PASACPGCPCPSGRKGTSTTCGS*LRLLLS
Trigger: ACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGT...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp TCCGATCGGTCCACGATGCCCTGCTCAATCCGTGACTTGGTCCGCTaGAGCATGGGCACGGTGGCCTCCACATCCTCGCTGACTGTAGAT +
Preference number: 5 (lower is better)
Translates to: SDRSTMPCSIRDLVR*SMGTVASTSSLTVD
Trigger: ATCTACAGTCAGCGAGGATGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTAGGCGCTGGCGCAGCTaGTCCAGCGTCCACTCGTTG +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSRRWRS*SSVHSL
Trigger: CAACGAGTGGACGCTGGACAAGCTGCGCCAGCGCCT...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAGGGACCAGCAGCGCTTCAATCCTATaGGCTGTGACGGCCAGGTTC +
Preference number: 5 (lower is better)
Translates to: PASACPGCPCPSGRKGTSSASIL*AVTARF
Trigger: GAACCTGGCCGTCACAGCCAATAGGATTGAAGCGCT...GCTGGTCCCTTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp TTGATGGACAGCTTCTGCAGGTGCACGCCCACATCCGTGACCACCTaGGGCAGCTTGCTCAGGTTGCTCTTGAGTCGCAGCACCTTGAGG +
Preference number: 5 (lower is better)
Translates to: LMDSFCRCTPTSVTT*GSLLRLLLSRSTLR
Trigger: CCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGCACCTGCAGAAGCTGTCCATCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp TGGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGCAGTACATTGTTaGCCAGGTGTAGAGCCCGTAGCTTCCGACACTGGAAGAGCTCTG +
Preference number: 5 (lower is better)
Translates to: WSARPLSRAATAVHC*PGVEPVASDTGRAL
Trigger: CAGAGCTCTTCCAGTGTCGGAAGCTACGGGCTCTACACCTGGGCAACAATGTACTGCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAATGCTCCCCTTCCTTCTaGTCCAGTACGCCCGTCTCC +
Preference number: 5 (lower is better)
Translates to: FWSPASACPGCPCPSGRKCSPSF*SSTPVS
Trigger: GGAGACGGGCGTACTGGACAAGAAGGAAGGGGAGCA...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGTACAGCCACAGCTCCTaGAGGCCTGTGAGCTGGGCG +
Preference number: 5 (lower is better)
Translates to: YPDLSYCSWASGAGSASEYSHSS*RPVSWA
Trigger: CGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTA...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp AGCGCTTCAATCCTATTGGCTGTGACGGCCAGGTTCTGGAGGTTCTaGAGGAGGCCAATGTCGGCGGGGAGGAAGGTCAGGTTGTTGTGG +
Preference number: 5 (lower is better)
Translates to: SASILLAVTARFWRF*RRPMSAGRKVRLLW
Trigger: CCACAACAACCTGACCTTCCTCCCCGCCGACATTGGCCTCCTGCAGAACCTCCAGAACCTGGCCGTCACAGCCAATAGGATTGAAGCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTTTGCTGAAGGCTGGCTaGGGGTCACTCTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSLLKAG*GSLSST
Trigger: GGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAA...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTAGCGTCCACTCGTTGTaGAGGTTCAGCTGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSSVHSL*RFSWRS
Trigger: GCTGCGCCAGCTGAACCTCAACAACGAGTGGACGCT...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTTTGAGTCGCAGCACCTaGAGGCGTTTGAGCTCCCGC +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSLSRST*RRLSSR
Trigger: GCGGGAGCTCAAACGCCTCAAGGTGCTGCGACTCAA...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCAGCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGTTGAGGACAATGAGCTaGGTGCCCTCATTGTTGATG +
Preference number: 5 (lower is better)
Translates to: PSGRKGTSPSVPAFWSGWLRTMS*VPSLLM
Trigger: CATCAACAATGAGGGCACCAAGCTCATTGTCCTCAA...CCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 90 bp ACAATGAGCTTGGTGCCCTCATTGTTGATGGACAGCTTCTGCAGGTaGACGCCCACATCCGTGACCACCTGCGGCAGCTTGCTCAGGTTG +
Preference number: 5 (lower is better)
Translates to: TMSLVPSLLMDSFCR*TPTSVTTCGSLLRL
Trigger: CAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGCACCTGCAGAAGCTGTCCATCAACAATGAGGGCACCAAGCTCATTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCGGGAGGAAAGGGACCAGCCCCTCAGTCCCTGCTTTCTGGTCTGGCTGGACCCTCAATGGTCTTGAGGTaGTTGTCCTTCAGGTCAATC +
Preference number: 5 (lower is better)
Translates to: AGGKGPAPQSLLSGLAGPSMVLR*LSFRSI
Trigger: GATTGACCTGAAGGACAACAACCTCAAGACCATTGA...GGGTCCAGCCAGACCAGAAAGCAGGGACTGAGGGGCTGGTCCCTTTCCTCCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 90 bp CTGCAGCATGGGCACGGTGGCCTCCACATCCTCGCTGACTGTAGATaGCTTCTTGTCCATGGACCCGTTCATCTTGCTGAAGGCTGGCTT +
Preference number: 5 (lower is better)
Translates to: LQHGHGGLHILADCR*LLVHGPVHLAEGWL
Trigger: AAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATCTACAGTCAGCGAGGATGTGGAGGCCACCGTGCCCATGCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTGGTAGGCAGATCATCTaGTCCTGGGTGACTTGCAGC +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSGRQII*SWVTCS
Trigger: GCTGCAAGTCACCCAGGACAAGATGATCTGCCTACC...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCTTGTCCTGGGCGTTCTaGGTGAGGCGCTGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: ASSVKTLIVQILHSETSLLSWAF*VRRWRS
Trigger: GCTGCGCCAGCGCCTCACCAAGAACGCCCAGGACAA...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 90 bp ACACCGCATCCACGTAGTTGTACTGGTGTCGATCTAGGTCATACTTaGTACCTGTGGGGCCTGTGTCAGGCGTCGGCAGGACTGTGGAGT +
Preference number: 5 (lower is better)
Translates to: TPHPRSCTGVDLGHT*YLWGLCQASAGLWS
Trigger: ACTCCACAGTCCTGCCGACGCCTGACACAGGCCCCACAGGTATCAAGTATGACCTAGATCGACACCAGTACAACTACGTGGATGCGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTGGTGAGTCGAAGCACTaGAGCAGGATAGACACAAAG +
Preference number: 5 (lower is better)
Translates to: KTGEPALPVLTSHAQSASGESKH*SRIDTK
Trigger: CTTTGTGTCTATCCTGCTCAAGTGCTTCGACTCACC...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTTCGTTGCAGGAGTCTTaGGTGACCCACTTACAAGGT +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSSLQES*VTHLQG
Trigger: ACCTTGTAAGTGGGTCACCAAAGACTCCTGCAACGA...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AAAACTGGGGAGCCTGCCCTCCCAGTGCTGACCTCTCATGCCCAATCTGCCTCTTTGAGGACAATGAGCTaGGTGCCCTCATTGTTGATG +
Preference number: 5 (lower is better)
Translates to: KTGEPALPVLTSHAQSASLRTMS*VPSLLM
Trigger: CATCAACAATGAGGGCACCAAGCTCATTGTCCTCAA...AGAGGCAGATTGGGCATGAGAGGTCAGCACTGGGAGGGCAGGCTCCCCAGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTCTGGTCTCCAGCAAGTGCCTGTCCTGGGTGTCCATGTCCCAGCGGGAGGAAAATCTCCTCAATGGTCTaGAGGTTGTTGTCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: FWSPASACPGCPCPSGRKISSMV*RLLSFR
Trigger: CCTGAAGGACAACAACCTCAAGACCATTGAGGAGAT...TTTCCTCCCGCTGGGACATGGACACCCAGGACAGGCACTTGCTGGAGACCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACTCGATCTGCGTCAGGTaGGTCAGCTCGCCCACTCTC +
Preference number: 5 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNSICVR*VSSPTL
Trigger: GAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGA...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGAGGCATTCCAGCCGGTaGCCCCGAAGCTCGATCTGC +
Preference number: 5 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRRHSSR*PRSSIC
Trigger: GCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCCT...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACCTTGTCCTGGGTGACTaGCAGCGTCCCTCCAAAGAC +
Preference number: 5 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNLVLGD*QRPSKD
Trigger: GTCTTTGGAGGGACGCTGCAAGTCACCCAGGACAAG...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GAGGCAGAGATGGCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGGTAGGCAGATCATCTaGTCCTGGGTGACTTGCAGC +
Preference number: 5 (lower is better)
Translates to: EAEMASSVKTLIVQILHSGRQII*SWVTCS
Trigger: GCTGCAAGTCACCCAGGACAAGATGATCTGCCTACC...AGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGCCATCTCTGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGCCCCGGAAGGAGTCGTaGCAGGAGTCTTTGGTGACC +
Preference number: 5 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRPRKES*QESLVT
Trigger: GGTCACCAAAGACTCCTGCAACGACTCCTTCCGGGG...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGCCCAGTGCCAATAAGGCAACTGTCCTACGGCTGGCTCACCCTACCCAACTCTACTGTAGATGACTTCTaGTCCATGGACCCGTTCATC +
Preference number: 5 (lower is better)
Translates to: SPVPIRQLSYGWLTLPNSTVDDF*SMDPFI
Trigger: GATGAACGGGTCCATGGACAAGAAGTCATCTACAGT...AGAGTTGGGTAGGGTGAGCCAGCCGTAGGACAGTTGCCTTATTGGCACTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGTGCTCAATCCGTGACTaGGTCCGCTGCAGCATGGGC +
Preference number: 5 (lower is better)
Translates to: AHTPKTGNSVQCLAALLKCSIRD*VRCSMG
Trigger: GCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCA...CTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCAAGGATGCCAAGATCTaGAAGAGCGTGGCCAGGGGG +
Preference number: 5 (lower is better)
Translates to: ASSVKTLIVQILHSETSLKDAKI*KSVARG
Trigger: CCCCCTGGCCACGCTCTTCAAGATCTTGGCATCCTT...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAGGCAGCTTGCTCAGGTaGCTCTTGAGTCGCAGCACC +
Preference number: 5 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQGSLLR*LLSRST
Trigger: GGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCC...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGCAGCTTGCTCAGGTaGCTCTTGAGTCGCAGCACC +
Preference number: 5 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRGSLLR*LLSRST
Trigger: GGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCC...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 90 bp ATGTGGTTGTACCACAGCTTAAGGCAGGTGAGGCGGTGCAGGTGCTaGAAGCTGATGATCTCCTCAATGGTCTTGAGGTTGTTGTCCTTC +
Preference number: 5 (lower is better)
Translates to: MWLYHSLRQVRRCRC*KLMISSMVLRLLSF
Trigger: GAAGGACAACAACCTCAAGACCATTGAGGAGATCATCAGCTTCCAGCACCTGCACCGCCTCACCTGCCTTAAGCTGTGGTACAACCACAT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTTTGCTGAAGGCTGGCTaGGGGTCACTCTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCLLKAG*GSLSST
Trigger: GGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAA...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTTGCTCAATCCGTGACTaGGTCCGCTGCAGCATGGGC +
Preference number: 5 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCCSIRD*VRCSMG
Trigger: GCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCA...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGTCGAACGAGTACTTCTaGAGGGAGCGCCGCAGCATC +
Preference number: 5 (lower is better)
Translates to: AHTPKTGNSVQCLAALLKSNEYF*RERRSI
Trigger: GATGCTGCGGCGCTCCCTCAAGAAGTACTCGTTCGA...CTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGAAGCGTCCACTCGTTGTaGAGGTTCAGCTGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERSVHSL*RFSWRS
Trigger: GCTGCGCCAGCTGAACCTCAACAACGAGTGGACGCT...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAATGGACGGAGAGATTCTCTGCACTCAGGTaGCCCGTCAGGTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: FPRVTSMTRRRKHKWTERFSALR*PVRCSS
Trigger: GGAGCTGCACCTGACGGGCAACCTGAGTGCAGAGAA...TCTCTCCGTCCATTTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCTTGCTCAGGTTGCTCTaGAGTCGCAGCACCTTGAGG +
Preference number: 5 (lower is better)
Translates to: ASSVKTLIVQILHSETSLLLRLL*SRSTLR
Trigger: CCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAA...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AAATACTGCACTCTGAGACTAGTCTCAGAGGTTCTGGTCTCCAGCAAGTGCCTGTTGCTCAGGTTGCTCTaGAGTCGCAGCACCTTGAGG +
Preference number: 5 (lower is better)
Translates to: KYCTLRLVSEVLVSSKCLLLRLL*SRSTLR
Trigger: CCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAA...CAGGCACTTGCTGGAGACCAGAACCTCTGAGACTAGTCTCAGAGTGCAGTATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TACCCAGATCTAAGTTACTGTTCCTGGGCCTCTGGTGCTGGCTCGGCCTCTGAGAGGTTAACCATCTTCTaGAGGCTGTTGAGGACAATG +
Preference number: 5 (lower is better)
Translates to: YPDLSYCSWASGAGSASERLTIF*RLLRTM
Trigger: CATTGTCCTCAACAGCCTCAAGAAGATGGTTAACCT...CTCAGAGGCCGAGCCAGCACCAGAGGCCCAGGAACAGTAACTTAGATCTGGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACAGCGACTGCAGTACATaGTTGCCCAGGTGTAGAGCC +
Preference number: 5 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNSDCST*LPRCRA
Trigger: GGCTCTACACCTGGGCAACAATGTACTGCAGTCGCT...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAAAGGCTATCGATCTGCGTCAGGTaGGTCAGCTCGCCCACTCTC +
Preference number: 5 (lower is better)
Translates to: SLQVRPTCNGLLHGCQRLSICVR*VSSPTL
Trigger: GAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGA...TAGCCTTTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAAGGCATTCCAGCCGGTaGCCCCGAAGCTCGATCTGC +
Preference number: 5 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQRHSSR*PRSSIC
Trigger: GCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCCT...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GAACTGAGTCTACAAGTCAGACCCACGTGTAACGGATTGCTTCATGGTTGTCAACTTGTCCTGGGTGACTaGCAGCGTCCCTCCAAAGAC +
Preference number: 5 (lower is better)
Translates to: ELSLQVRPTCNGLLHGCQLVLGD*QRPSKD
Trigger: GTCTTTGGAGGGACGCTGCAAGTCACCCAGGACAAG...TTGACAACCATGAAGCAATCCGTTACACGTGGGTCTGACTTGTAGACTCAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GCCTCCAGTGTGAAGACCCTGATTGTCCAAATACTGCACTCTGAGACTAGTCTCCGATCTAGGTCATACTaGATACCTGTGGGGCCTGTG +
Preference number: 5 (lower is better)
Translates to: ASSVKTLIVQILHSETSLRSRSY*IPVGPV
Trigger: CACAGGCCCCACAGGTATCAAGTATGACCTAGATCG...GAGACTAGTCTCAGAGTGCAGTATTTGGACAATCAGGGTCTTCACACTGGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATACAGCCACAGCTCCTaGAGGCCTGTGAGCTGGGCG +
Preference number: 5 (lower is better)
Translates to: LILSASPKKKKVNTARVLYSHSS*RPVSWA
Trigger: CGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTAAGCACCTTGAGGCGTTaGAGCTCCCGCAGCCCGTCA +
Preference number: 5 (lower is better)
Translates to: LILSASPKKKKVNTARVLSTLRR*SSRSPS
Trigger: TGACGGGCTGCGGGAGCTCAAACGCCTCAAGGTGCT...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACCTGGTGCGTGGAAACTaGAACCAGAAGTTGCTACAG +
Preference number: 5 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNLVRGN*NQKLLQ
Trigger: CTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCAG...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp AAATACTGCACTCTGAGACTAGTCTCAGAGGTTCTGGTCTCCAGCAAGTGCCTGGGTGAGTCGAAGCACTaGAGCAGGATAGACACAAAG +
Preference number: 5 (lower is better)
Translates to: KYCTLRLVSEVLVSSKCLGESKH*SRIDTK
Trigger: CTTTGTGTCTATCCTGCTCAAGTGCTTCGACTCACC...CAGGCACTTGCTGGAGACCAGAACCTCTGAGACTAGTCTCAGAGTGCAGTATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGCGAACTTGATCACCTaGATGATGGTCTGCCGCATG +
Preference number: 5 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRANLIT*MMVCRM
Trigger: CATGCGGCAGACCATCATCAAGGTGATCAAGTTCGC...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCACACCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGTTCAGCTGGCGCAGCTaGTTTTCACTCACCTCAGAC +
Preference number: 5 (lower is better)
Translates to: PTPQRQEILFNVLLLCSRFSWRS*FSLTSD
Trigger: GTCTGAGGTGAGTGAAAACAAGCTGCGCCAGCTGAA...CCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGGTGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAAGCTTGGTGCCCTCATaGTTGATGGACAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQSLVPS*LMDSFC
Trigger: GCAGAAGCTGTCCATCAACAATGAGGGCACCAAGCT...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CCCCAAAGACAGGAAATTCTGTTCAATGTCTTGCTGCTTTGCTCAAGGGGGAAACGATCTAGGTCATACTaGATACCTGTGGGGCCTGTG +
Preference number: 5 (lower is better)
Translates to: PQRQEILFNVLLLCSRGKRSRSY*IPVGPV
Trigger: CACAGGCCCCACAGGTATCAAGTATGACCTAGATCG...TTTCCCCCTTGAGCAAAGCAGCAAGACATTGAACAGAATTTCCTGTCTTTGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp ACGCTAAACTGTACTGTGTGCAAACCAGGTGCCCAGTACAAACTGTCCTGGAACACTGTAGATGACTTCTaGTCCATGGACCCGTTCATC +
Preference number: 5 (lower is better)
Translates to: TLNCTVCKPGAQYKLSWNTVDDF*SMDPFI
Trigger: GATGAACGGGTCCATGGACAAGAAGTCATCTACAGT...GTTCCAGGACAGTTTGTACTGGGCACCTGGTTTGCACACAGTACAGTTTAGCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTCACAGCGGGATCTCCTaGATGTCCGTGAACTTGATG +
Preference number: 5 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCHSGIS*MSVNLM
Trigger: CATCAAGTTCACGGACATCAAGGAGATCCCGCTGTG...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTAGCACCTTGAGGCGTTaGAGCTCCCGCAGCCCGTCA +
Preference number: 5 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVISTLRR*SSRSPS
Trigger: TGACGGGCTGCGGGAGCTCAAACGCCTCAAGGTGCT...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAAGCGCTTCAATCCTATaGGCTGTGACGGCCAGGTTC +
Preference number: 5 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQSASIL*AVTARF
Trigger: GAACCTGGCCGTCACAGCCAATAGGATTGAAGCGCT...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp CTAGTGTGCAGTATTTCCAAGGGTTACATCCATGACACGACGCAGAAAACACAAAGCGACTGCAGTACATaGTTGCCCAGGTGTAGAGCC +
Preference number: 5 (lower is better)
Translates to: LVCSISKGYIHDTTQKTQSDCST*LPRCRA
Trigger: GGCTCTACACCTGGGCAACAATGTACTGCAGTCGCT...TTGTGTTTTCTGCGTCGTGTCATGGATGTAACCCTTGGAAATACTGCACACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTTGCTCCCCTTCCTTCTaGTCCAGTACGCCCGTCTCC +
Preference number: 5 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVICSPSF*SSTPVS
Trigger: GGAGACGGGCGTACTGGACAAGAAGGAAGGGGAGCA...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAATGATGAGGGCGAACTaGATCACCTTGATGATGGTC +
Preference number: 5 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQMMRAN*ITLMMV
Trigger: GACCATCATCAAGGTGATCAAGTTCGCCCTCATCAT...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTGTGCAAATCTCCTCAATGGTCTaGAGGTTGTTGTCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: DLKQSGLPPLDAKLYCVQISSMV*RLLSFR
Trigger: CCTGAAGGACAACAACCTCAAGACCATTGAGGAGAT...TTGCACACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTATGATGAGGGCGAACTaGATCACCTTGATGATGGTC +
Preference number: 5 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCMMRAN*ITLMMV
Trigger: GACCATCATCAAGGTGATCAAGTTCGCCCTCATCAT...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATTCAGCTGGCGCAGCTaGTTTTCACTCACCTCAGAC +
Preference number: 5 (lower is better)
Translates to: LILSASPKKKKVNTARVLFSWRS*FSLTSD
Trigger: GTCTGAGGTGAGTGAAAACAAGCTGCGCCAGCTGAA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTACCACCTGCGGCAGCTaGCTCAGGTTGCTCTTGAGT +
Preference number: 5 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVITTCGS*LRLLLS
Trigger: ACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGT...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTAAGCTTGGTGCCCTCATaGTTGATGGACAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: LILSASPKKKKVNTARVLSLVPS*LMDSFC
Trigger: GCAGAAGCTGTCCATCAACAATGAGGGCACCAAGCT...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GTGATTGATCTAAAGCAGAGTGGCTTACCGCCACTAGACGCTAAACTGTACTGTAGGTTAACCATCTTCTaGAGGCTGTTGAGGACAATG +
Preference number: 5 (lower is better)
Translates to: VIDLKQSGLPPLDAKLYCRLTIF*RLLRTM
Trigger: CATTGTCCTCAACAGCCTCAAGAAGATGGTTAACCT...ACAGTACAGTTTAGCGTCTAGTGGCGGTAAGCCACTCTGCTTTAGATCAATCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTGCGAACTTGATCACCTaGATGATGGTCTGCCGCATG +
Preference number: 5 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIANLIT*MMVCRM
Trigger: CATGCGGCAGACCATCATCAAGGTGATCAAGTTCGC...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCACAGCGGGATCTCCTaGATGTCCGTGAACTTGATG +
Preference number: 5 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVIHSGIS*MSVNLM
Trigger: CATCAAGTTCACGGACATCAAGGAGATCCCGCTGTG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp GACATAATCATTAAGACAAGAGACGCTAAAACGTGCCTTAGTGTCCATGTGATTCTGGTGCGTGGAAACTaGAACCAGAAGTTGCTACAG +
Preference number: 5 (lower is better)
Translates to: DIIIKTRDAKTCLSVHVILVRGN*NQKLLQ
Trigger: CTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCAG...AATCACATGGACACTAAGGCACGTTTTAGCGTCTCTTGTCTTAATGATTATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS-3UTR CAA 90 bp TTGATTCTGTCAGCATCACCTAAAAAGAAAAAGGTGAACACTGCCAGGGTGCTATCAATGGTCTTGAGGTaGTTGTCCTTCAGGTCAATC +
Preference number: 5 (lower is better)
Translates to: LILSASPKKKKVNTARVLSMVLR*LSFRSI
Trigger: GATTGACCTGAAGGACAACAACCTCAAGACCATTGA...TAGCACCCTGGCAGTGTTCACCTTTTTCTTTTTAGGTGATGCTGACAGAATCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 72 bp GGCAGGCATTCCAGCCGGTTGCCCCGAAGCTCGATCTaGGTCAGGTTGGTCAGCTCGCCCACTCTCGAGGGC +
Preference number: 6 (lower is better)
Translates to: GRHSSRLPRSSI*VRLVSSPTLEG
Trigger: GCCCTCGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCCTGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp CCAGCCGGTTGCCCCGAAGCTCGATCTGCGTCAGGTTaGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGCA +
Preference number: 6 (lower is better)
Translates to: PAGCPEARSASG*SARPLSRAATA
Trigger: TGCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGGCAACCGGCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TCCAGCCGGTTGCCCCGAAGCTCGATCTGCGTCAGGTaGGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGC +
Preference number: 6 (lower is better)
Translates to: SSRLPRSSICVR*VSSPTLEGSDC
Trigger: GCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGGCAACCGGCTGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp ACGCCCGTCTCCGATCGGTCCACGATGCCCTGCTCAATCCGTGACTaGGTCCGCTGCAGCATGGGCACGGTGGCCTCCACATCCTCGCTG +
Preference number: 6 (lower is better)
Translates to: TPVSDRSTMPCSIRD*VRCSMGTVASTSSL
Trigger: CAGCGAGGATGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACGGGCGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp GCAGGAGCCTCGATCTTGGCTGCCGTGTGGTACAGCCACAGCTCCTaGAGGCCTGTGAGCTGGGCGATGCTGGGCGGGATGGTCACGTCG +
Preference number: 6 (lower is better)
Translates to: AGASILAAVWYSHSS*RPVSWAMLGGMVTS
Trigger: CGACGTGACCATCCCGCCCAGCATCGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGATCGAGGCTCCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 72 bp CGTCTCCGATCGGTCCACGATGCCCTGCTCAATCCGTaGCTTGGTCCGCTGCAGCATGGGCACGGTGGCCTC +
Preference number: 6 (lower is better)
Translates to: RLRSVHDALLNP*LGPLQHGHGGL
Trigger: GAGGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 72 bp TCCAGTACGCCCGTCTCCGATCGGTCCACGATGCCCTaGTCAATCCGTGACTTGGTCCGCTGCAGCATGGGC +
Preference number: 6 (lower is better)
Translates to: SSTPVSDRSTMP*SIRDLVRCSMG
Trigger: GCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACGGGCGTACTGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp CCGATCGGTCCACGATGCCCTGCTCAATCCGTGACTTaGTCCGCTGCAGCATGGGCACGGTGGCCTCCACAT +
Preference number: 6 (lower is better)
Translates to: PIGPRCPAQSVT*SAAAWARWPPH
Trigger: ATGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp GTGTGGTACAGCCACAGCTCCTTGAGGCCTGTGAGCTaGGCGATGCTGGGCGGGATGGTCACGTCGGGTATC +
Preference number: 6 (lower is better)
Translates to: VWYSHSSLRPVS*AMLGGMVTSGI
Trigger: GATACCCGACGTGACCATCCCGCCCAGCATCGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTACCACAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp AAGGCCAGGGCAGGAGCCTCGATCTTGGCTGCCGTGTaGTACAGCCACAGCTCCTTGAGGCCTGTGAGCTGG +
Preference number: 6 (lower is better)
Translates to: KARAGASILAAV*YSHSSLRPVSW
Trigger: CCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGATCGAGGCTCCTGCCCTGGCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TCCGATCGGTCCACGATGCCCTGCTCAATCCGTGACTaGGTCCGCTGCAGCATGGGCACGGTGGCCTCCACA +
Preference number: 6 (lower is better)
Translates to: SDRSTMPCSIRD*VRCSMGTVAST
Trigger: TGTGGAGGCCACCGTGCCCATGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TCGATCTTGGCTGCCGTGTGGTACAGCCACAGCTCCTaGAGGCCTGTGAGCTGGGCGATGCTGGGCGGGATG +
Preference number: 6 (lower is better)
Translates to: SILAAVWYSHSS*RPVSWAMLGGM
Trigger: CATCCCGCCCAGCATCGCCCAGCTCACAGGCCTCAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGATCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TTCTCCCGCAGGAAGGCCAGGGCAGGAGCCTCGATCTaGGCTGCCGTGTGGTACAGCCACAGCTCCTTGAGG +
Preference number: 6 (lower is better)
Translates to: FSRRKARAGASI*AAVWYSHSSLR
Trigger: CCTCAAGGAGCTGTGGCTGTACCACACGGCAGCCAAGATCGAGGCTCCTGCCCTGGCCTTCCTGCGGGAGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp ACGCCCACATCCGTGACCACCTGCGGCAGCTTGCTCAGGTTGCTCTaGAGTCGCAGCACCTTGAGGCGTTTGAGCTCCCGCAGCCCGTCA +
Preference number: 6 (lower is better)
Translates to: TPTSVTTCGSLLRLL*SRSTLRRLSSRSPS
Trigger: TGACGGGCTGCGGGAGCTCAAACGCCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp AGGTGCACGCCCACATCCGTGACCACCTGCGGCAGCTTGCTCAGGTaGCTCTTGAGTCGCAGCACCTTGAGGCGTTTGAGCTCCCGCAGC +
Preference number: 6 (lower is better)
Translates to: RCTPTSVTTCGSLLR*LLSRSTLRRLSSRS
Trigger: GCTGCGGGAGCTCAAACGCCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGCACCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp GGCAGGCATTCCAGCCGGTTGCCCCGAAGCTCGATCTGCGTCAGGTaGGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGCAGTACATTG +
Preference number: 6 (lower is better)
Translates to: GRHSSRLPRSSICVR*VSSPTLEGSDCSTL
Trigger: CAATGTACTGCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCAACCTGACGCAGATCGAGCTTCGGGGCAACCGGCTGGAATGCCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp AGCTCCAGCTTGTCCTGGGCGTTCTTGGTGAGGCGCTaGCGCAGCTTGTCCAGCGTCCACTCGTTGTTGAGG +
Preference number: 6 (lower is better)
Translates to: SSSLSWAFLVRR*RSLSSVHSLLR
Trigger: CCTCAACAACGAGTGGACGCTGGACAAGCTGCGCCAGCGCCTCACCAAGAACGCCCAGGACAAGCTGGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TCCGTGACCACCTGCGGCAGCTTGCTCAGGTTGCTCTaGAGTCGCAGCACCTTGAGGCGTTTGAGCTCCCGC +
Preference number: 6 (lower is better)
Translates to: SVTTCGSLLRLL*SRSTLRRLSSR
Trigger: GCGGGAGCTCAAACGCCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp AGGTGCACGCCCACATCCGTGACCACCTGCGGCAGCTaGCTCAGGTTGCTCTTGAGTCGCAGCACCTTGAGG +
Preference number: 6 (lower is better)
Translates to: RCTPTSVTTCGS*LRLLLSRSTLR
Trigger: CCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGCACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp AGCTTCTGCAGGTGCACGCCCACATCCGTGACCACCTGCGGCAGCTaGCTCAGGTTGCTCTTGAGTCGCAGCACCTTGAGGCGTTTGAGC +
Preference number: 6 (lower is better)
Translates to: SFCRCTPTSVTTCGS*LRLLLSRSTLRRLS
Trigger: GCTCAAACGCCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGCACCTGCAGAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 72 bp TCTTGTCCAGTACGCCCGTCTCCGATCGGTCCACGATaGCCTGCTCAATCCGTGACTTGGTCCGCTGCAGCA +
Preference number: 6 (lower is better)
Translates to: SCPVRPSPIGPR*PAQSVTWSAAA
Trigger: TGCTGCAGCGGACCAAGTCACGGATTGAGCAGGGCATCGTGGACCGATCGGAGACGGGCGTACTGGACAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 72 bp ATCCTATTGGCTGTGACGGCCAGGTTCTGGAGGTTCTaGAGGAGGCCAATGTCGGCGGGGAGGAAGGTCAGG +
Preference number: 6 (lower is better)
Translates to: ILLAVTARFWRF*RRPMSAGRKVR
Trigger: CCTGACCTTCCTCCCCGCCGACATTGGCCTCCTGCAGAACCTCCAGAACCTGGCCGTCACAGCCAATAGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TCTGGGCTGGAGGCTGCCCAGCCCCGGAAGGAGTCGTaGCAGGAGTCTTTGGTGACCCACTTACAAGGTAGG +
Preference number: 6 (lower is better)
Translates to: SGLEAAQPRKES*QESLVTHLQGR
Trigger: CCTACCTTGTAAGTGGGTCACCAAAGACTCCTGCAACGACTCCTTCCGGGGCTGGGCAGCCTCCAGCCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp GGCAGCTTGCTCAGGTTGCTCTTGAGTCGCAGCACCTaGAGGCGTTTGAGCTCCCGCAGCCCGTCAATGACG +
Preference number: 6 (lower is better)
Translates to: GSLLRLLLSRST*RRLSSRSPSMT
Trigger: CGTCATTGACGGGCTGCGGGAGCTCAAACGCCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp CCCACATCCGTGACCACCTGCGGCAGCTTGCTCAGGTaGCTCTTGAGTCGCAGCACCTTGAGGCGTTTGAGC +
Preference number: 6 (lower is better)
Translates to: PTSVTTCGSLLR*LLSRSTLRRLS
Trigger: GCTCAAACGCCTCAAGGTGCTGCGACTCAAGAGCAACCTGAGCAAGCTGCCGCAGGTGGTCACGGATGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp AGCTCGCCCACTCTCGAGGGCAGCGACTGCAGTACATaGTTGCCCAGGTGTAGAGCCCGTAGCTTCCGACAC +
Preference number: 6 (lower is better)
Translates to: SSPTLEGSDCST*LPRCRARSFRH
Trigger: GTGTCGGAAGCTACGGGCTCTACACCTGGGCAACAATGTACTGCAGTCGCTGCCCTCGAGAGTGGGCGAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp AGGTTGGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGCAGTACATaGTTGCCCAGGTGTAGAGCCCGTAGCTTCCGACACTGGAAGAGC +
Preference number: 6 (lower is better)
Translates to: RLVSSPTLEGSDCST*LPRCRARSFRHWKS
Trigger: GCTCTTCCAGTGTCGGAAGCTACGGGCTCTACACCTGGGCAACAATGTACTGCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCAACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 72 bp CAATGTCGGCGGGGAGGAAGGTCAGGTTGTTGTGGCTaGGGTCCAGGTAGCGCAGCTTGCGGCAGTAGAAGA +
Preference number: 6 (lower is better)
Translates to: QCRRGGRSGCCG*GPGSAACGSRR
Trigger: TCTTCTACTGCCGCAAGCTGCGCTACCTGGACCTCAGCCACAACAACCTGACCTTCCTCCCCGCCGACATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 72 bp TTGGTGCCCTCATTGTTGATGGACAGCTTCTGCAGGTaGACGCCCACATCCGTGACCACCTGCGGCAGCTTG +
Preference number: 6 (lower is better)
Translates to: LVPSLLMDSFCR*TPTSVTTCGSL
Trigger: CAAGCTGCCGCAGGTGGTCACGGATGTGGGCGTGCACCTGCAGAAGCTGTCCATCAACAATGAGGGCACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp GATGACTTCTTGTCCATGGACCCGTTCATCTTGCTGAAGGCTGGCTaGGGGTCACTCTCCTCCACCACTGTCTCCGACAGGGCCCGTGTG +
Preference number: 6 (lower is better)
Translates to: DDFLSMDPFILLKAG*GSLSSTTVSDRARV
Trigger: CACACGGGCCCTGTCGGAGACAGTGGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp TTGGTCAGCTCGCCCACTCTCGAGGGCAGCGACTGCAGTACATTGTaGCCCAGGTGTAGAGCCCGTAGCTTCCGACACTGGAAGAGCTCT +
Preference number: 6 (lower is better)
Translates to: LVSSPTLEGSDCSTL*PRCRARSFRHWKSS
Trigger: AGAGCTCTTCCAGTGTCGGAAGCTACGGGCTCTACACCTGGGCAACAATGTACTGCAGTCGCTGCCCTCGAGAGTGGGCGAGCTGACCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TTGTCCATGGACCCGTTCATCTTGCTGAAGGCTGGCTaGGGGTCACTCTCCTCCACCACTGTCTCCGACAGG +
Preference number: 6 (lower is better)
Translates to: LSMDPFILLKAG*GSLSSTTVSDR
Trigger: CCTGTCGGAGACAGTGGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp ATGGGCACGGTGGCCTCCACATCCTCGCTGACTGTAGATGACTTCTaGTCCATGGACCCGTTCATCTTGCTGAAGGCTGGCTTGGGGTCA +
Preference number: 6 (lower is better)
Translates to: MGTVASTSSLTVDDF*SMDPFILLKAGLGS
Trigger: TGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATCTACAGTCAGCGAGGATGTGGAGGCCACCGTGCCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp CTTCTTGTCCATGGACCCGTTCATCTTGCTGAAGGCTaGCTTGGGGTCACTCTCCTCCACCACTGTCTCCGA +
Preference number: 6 (lower is better)
Translates to: LLVHGPVHLAEG*LGVTLLHHCLR
Trigger: TCGGAGACAGTGGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp TCCTCGCTGACTGTAGATGACTTCTTGTCCATGGACCCGTTCATCTaGCTGAAGGCTGGCTTGGGGTCACTCTCCTCCACCACTGTCTCC +
Preference number: 6 (lower is better)
Translates to: SSLTVDDFLSMDPFI*LKAGLGSLSSTTVS
Trigger: GGAGACAGTGGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATCTACAGTCAGCGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 72 bp CCACGTAGTTGTACTGGTGTCGATCTAGGTCATACTTaGTACCTGTGGGGCCTGTGTCAGGCGTCGGCAGGA +
Preference number: 6 (lower is better)
Translates to: PRSCTGVDLGHT*YLWGLCQASAG
Trigger: TCCTGCCGACGCCTGACACAGGCCCCACAGGTATCAAGTATGACCTAGATCGACACCAGTACAACTACGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS TCA 72 bp GGGCACGGTGGCCTCCACATCCTCGCTGACTGTAGATaGCTTCTTGTCCATGGACCCGTTCATCTTGCTGAA +
Preference number: 6 (lower is better)
Translates to: GHGGLHILADCR*LLVHGPVHLAE
Trigger: TTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATCTACAGTCAGCGAGGATGTGGAGGCCACCGTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp GTGGCCTCCACATCCTCGCTGACTGTAGATGACTTCTaGTCCATGGACCCGTTCATCTTGCTGAAGGCTGGC +
Preference number: 6 (lower is better)
Translates to: VASTSSLTVDDF*SMDPFILLKAG
Trigger: GCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATCTACAGTCAGCGAGGATGTGGAGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS GCA 72 bp ATGATGAGGGCGAACTTGATCACCTTGATGATGGTCTaGCGCATGTACAGGCGGTACACAATGTCCCCCTCC +
Preference number: 6 (lower is better)
Translates to: MMRANLITLMMV*RMYRRYTMSPS
Trigger: GGAGGGGGACATTGTGTACCGCCTGTACATGCGGCAGACCATCATCAAGGTGATCAAGTTCGCCCTCATCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CCA 72 bp TACCACAGCTTAAGGCAGGTGAGGCGGTGCAGGTGCTaGAAGCTGATGATCTCCTCAATGGTCTTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: YHSLRQVRRCRC*KLMISSMVLRL
Trigger: CAACCTCAAGACCATTGAGGAGATCATCAGCTTCCAGCACCTGCACCGCCTCACCTGCCTTAAGCTGTGGTA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp ACTGTAGATGACTTCTTGTCCATGGACCCGTTCATCTaGCTGAAGGCTGGCTTGGGGTCACTCTCCTCCACC +
Preference number: 6 (lower is better)
Translates to: TVDDFLSMDPFI*LKAGLGSLSST
Trigger: GGTGGAGGAGAGTGACCCCAAGCCAGCCTTCAGCAAGATGAACGGGTCCATGGACAAGAAGTCATCTACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp TCTTTGGTGACCCACTTACAAGGTAGGCAGATCATCTaGTCCTGGGTGACTTGCAGCGTCCCTCCAAAGACA +
Preference number: 6 (lower is better)
Translates to: SLVTHLQGRQII*SWVTCSVPPKT
Trigger: TGTCTTTGGAGGGACGCTGCAAGTCACCCAGGACAAGATGATCTGCCTACCTTGTAAGTGGGTCACCAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 90 bp AGGATAGACACAAAGTGTTCCAGCTTCGAACTGGTGCGTGGAAACTaGAACCAGAAGTTGCTACAGGCCAGGAAGATGAGGGTGTGCAGA +
Preference number: 6 (lower is better)
Translates to: RIDTKCSSFELVRGN*NQKLLQARKMRVCR
Trigger: TCTGCACACCCTCATCTTCCTGGCCTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCAGTTCGAAGCTGGAACACTTTGTGTCTATCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8
CDS CAA 72 bp ACAAAGTGTTCCAGCTTCGAACTGGTGCGTGGAAACTaGAACCAGAAGTTGCTACAGGCCAGGAAGATGAGG +
Preference number: 6 (lower is better)
Translates to: TKCSSFELVRGN*NQKLLQARKMR
Trigger: CCTCATCTTCCTGGCCTGTAGCAACTTCTGGTTCAAGTTTCCACGCACCAGTTCGAAGCTGGAACACTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095078.3
ENSMUST00000113654.8