RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRRC74B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022759

Ensembl transcript IDs: ENSMUST00000023442.13, ENSMUST00000100123.10, ENSMUST00000232637.2

Found 192 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCCAGCGGGATTTaGGTATGGAGAGCTATGGCACAGAGTCAGCTCTGGGGCACAGAT +
Preference number: 1 (lower is better)
Translates to: GVSALLGDQLSPSGI*VWRAMAQSQLWGTD
Trigger: ATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp TGGGAGACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATaGCACAGAGTCAGCTCTGGGGCACAGATGGAAACCAGAAGCACA +
Preference number: 1 (lower is better)
Translates to: WETSSLPAGFGYGEL*HRVSSGAQMETRST
Trigger: TGTGCTTCTGGTTTCCATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTCTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp ATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGTaGGATTTGGGTATGAGGAGCTGTGGCACAGGCTCAGCTCTGGAT +
Preference number: 1 (lower is better)
Translates to: ISLCVSTPGRPVLSR*DLGMRSCGTGSALD
Trigger: ATCCAGAGCTGAGCCTGTGCCACAGCTCCTCATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp CAGAAGTGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTaGGAGACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTA +
Preference number: 1 (lower is better)
Translates to: QKWWFHLCSQVCQHS*ETSSLPAGFGYGEL
Trigger: TAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCACTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp TGGGAGACCAGTTCTCTCCCGGTGGGATTTGGGTATGAGGAGCTGTaGCACAGGCTCAGCTCTGGATGTAGACGGAAACTGGAAGGATCT +
Preference number: 1 (lower is better)
Translates to: WETSSLPVGFGYEEL*HRLSSGCRRKLEGS
Trigger: AGATCCTTCCAGTTTCCGTCTACATCCAGAGCTGAGCCTGTGCCACAGCTCCTCATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp CTGACTGTGACTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTaGGAGACCAGTTCTCTCCCGGTGGGATTTGGGTATGAGGAGCTG +
Preference number: 1 (lower is better)
Translates to: LTVTCSSYKPVCQHS*ETSSLPVGFGYEEL
Trigger: CAGCTCCTCATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAGTCACAGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR GCA 90 bp TCCCTCTTCAACCAGGAATTTGAGCAGAAGTGGTGGTTTCACCTATaGTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCCA +
Preference number: 1 (lower is better)
Translates to: SLFNQEFEQKWWFHL*SQVCQHSWETSSLP
Trigger: TGGGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp CTGGCTGTTCCTTGGTCCCTCTTCAACCAGGAATTTGAGCAGAAGTaGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAG +
Preference number: 1 (lower is better)
Translates to: LAVPWSLFNQEFEQK*WFHLCSQVCQHSWE
Trigger: CTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGAGGGACCAAGGAACAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp CCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTaGGGCACAGATGGAAACCAGAAGCACATGGGTGATTTTATAATT +
Preference number: 1 (lower is better)
Translates to: PSGIWVWRAMAQSQL*GTDGNQKHMGDFII
Trigger: AATTATAAAATCACCCATGTGCTTCTGGTTTCCATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp GAAGAGGGCATTGGATCCCATTACATATGGTTGTGGGCCACCATGTaGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGT +
Preference number: 1 (lower is better)
Translates to: EEGIGSHYIWLWATM*LLEIELRTSERTVS
Trigger: ACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCACAACCATATGTAATGGGATCCAATGCCCTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp TATAAGTACACTGTGGTTATCTTCAGACACACCAGAAGAGGGCATTaGATCCCATTACATATGGTTGTGGGCCACCATGTGGTTGCTGGA +
Preference number: 1 (lower is better)
Translates to: YKYTVVIFRHTRRGH*IPLHMVVGHHVVAG
Trigger: TCCAGCAACCACATGGTGGCCCACAACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACAGTGTACTTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 90 bp GAACTGAGTCACCAGAACATGAAGATCTGGATGACAAGAATGTCATaGACCTTGTGTTCAGTGTTGTTCATGGGCAGCTTTTTGGTTGAA +
Preference number: 1 (lower is better)
Translates to: ELSHQNMKIWMTRMS*TLCSVLFMGSFLVE
Trigger: TTCAACCAAAAAGCTGCCCATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAGATCTTCATGTTCTGGTGACTCAGTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR GCA 90 bp ATGAGTTATGACTGTCTTCTTGCAAGAGAGCTTGGGAGATCCATTTaGATATCTCCTTTATGTTTTGTTGAACTGAGTCACCAGAACATG +
Preference number: 1 (lower is better)
Translates to: MSYDCLLARELGRSI*ISPLCFVELSHQNM
Trigger: CATGTTCTGGTGACTCAGTTCAACAAAACATAAAGGAGATATGCAAATGGATCTCCCAAGCTCTCTTGCAAGAAGACAGTCATAACTCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR GCA 90 bp CAGAAGCACATGGGTGATTTTATAATTCAGAATGTAATGATCAGTTaGCTTCCAATGAGTTATGACTGTCTTCTTGCAAGAGAGCTTGGG +
Preference number: 1 (lower is better)
Translates to: QKHMGDFIIQNVMIS*LPMSYDCLLARELG
Trigger: CCCAAGCTCTCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTGAATTATAAAATCACCCATGTGCTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR TCA 90 bp TTTTATAATTCAGAATGTAATGATCAGTTGCCTTCCAATGAGTTATaGCTGTCTTCTTGCAAGAGAGCTTGGGAGATCCATTTGCATATC +
Preference number: 1 (lower is better)
Translates to: FYNSECNDQLPSNEL*LSSCKRAWEIHLHI
Trigger: GATATGCAAATGGATCTCCCAAGCTCTCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTGAATTATAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 90 bp AGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCCAGCGGGATTaGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTGGGGCACAGA +
Preference number: 2 (lower is better)
Translates to: RCVSTPGRPALSQRD*GMESYGTESALGHR
Trigger: TCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 90 bp CTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGTGGGATTaGGGTATGAGGAGCTGTGGCACAGGCTCAGCTCTGGATGTAGAC +
Preference number: 2 (lower is better)
Translates to: LCVSTPGRPVLSRWD*GMRSCGTGSALDVD
Trigger: GTCTACATCCAGAGCTGAGCCTGTGCCACAGCTCCTCATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp TGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGCTCTGGGGCACAGATaGAAACCAGAAGCACATGGG +
Preference number: 2 (lower is better)
Translates to: CSSYKPVCQHSWETSSLPALGHR*KPEAHG
Trigger: CCCATGTGCTTCTGGTTTCCATCTGTGCCCCAGAGC...CGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp GTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTGCACAGAGTCAGCTCTaGGGCACAGATGGAAACCAG +
Preference number: 2 (lower is better)
Translates to: VVSPMLSGVSALLGDQLSAQSQL*GTDGNQ
Trigger: CTGGTTTCCATCTGTGCCCCAGAGCTGACTCTGTGC...AGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGAGCGGGATTTGGGTATaGAGAGCTATGGCACAGAGT +
Preference number: 2 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRSGIWV*RAMAQS
Trigger: ACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCT...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR GCA 90 bp GACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCCAGATTATGGAAGATaGCAGAGAGCAGAAAGGAAG +
Preference number: 2 (lower is better)
Translates to: DQLSPSGIWVWRAMAQSQPDYGR*QRAERK
Trigger: CTTCCTTTCTGCTCTCTGGCATCTTCCATAATCTGG...CTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR GCA 90 bp CAACTGCCTGTAACACAAGTCTCAGGGGATCTGACACCTTCTTCTTGCCCCCAATGCACCCATCCCCAATaGTGGAGATACCCCGTTCTT +
Preference number: 2 (lower is better)
Translates to: QLPVTQVSGDLTPSSCPQCTHPQ*WRYPVL
Trigger: AAGAACGGGGTATCTCCAGCATTGGGGATGGGTGCA...TTGGGGGCAAGAAGAAGGTGTCAGATCCCCTGAGACTTGTGTTACAGGCAGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
3UTR-3UTR CCA 90 bp CCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGGTGTGTCAGCACTCCTaGGAGACCAGCTCTCTCCCA +
Preference number: 2 (lower is better)
Translates to: PPCGCWKLNSGPLKEQSVVCQHS*ETSSLP
Trigger: TGGGAGAGAGCTGGTCTCCCAGGAGTGCTGACACAC...CACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp TGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGCTTCAACCAGGAATTTaGGCAGAAGTGGTGGTTTCA +
Preference number: 2 (lower is better)
Translates to: CSSYKPVCQHSWETSSLPLQPGI*AEVVVS
Trigger: TGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAG...CGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR GCA 90 bp TGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCCAGATTATGGAAGATaGCAGAGAGCAGAAAGGAAG +
Preference number: 2 (lower is better)
Translates to: WWFHLCSQVCQHSWETSSPDYGR*QRAERK
Trigger: CTTCCTTTCTGCTCTCTGGCATCTTCCATAATCTGG...AGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCTTCAACCAGGAATTTaGGCAGAAGTGGTGGTTTCA +
Preference number: 2 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSLQPGI*AEVVVS
Trigger: TGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAG...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp TGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTAATGAAGCCAGATTATaGAAGATGCCAGAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: WWFHLCSQVCQHSWETSSNEARL*KMPESR
Trigger: TCTGCTCTCTGGCATCTTCCATAATCTGGCTTCATT...AGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp GGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCGTTCAGTGTTGTTCATaGGCAGCTTTTTGGTTGAAT +
Preference number: 2 (lower is better)
Translates to: GFTYALRCVSTPGRPALSVQCCS*AAFWLN
Trigger: ATTCAACCAAAAAGCTGCCCATGAACAACACTGAAC...GGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp TGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTATGAACCACAGCAAATaGAGCCAGATTATGGAAGAT +
Preference number: 2 (lower is better)
Translates to: WWFHLCSQVCQHSWETSSMNHSK*SQIMED
Trigger: ATCTTCCATAATCTGGCTTCATTTGCTGTGGTTCAT...AGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp TGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACTGAGGCACAGAGTCAGCTCTaGGGCACAGATGGAAACCAG +
Preference number: 2 (lower is better)
Translates to: WKLNSGPLKEQSVLLTTEAQSQL*GTDGNQ
Trigger: CTGGTTTCCATCTGTGCCCCAGAGCTGACTCTGTGC...CTCAGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp CCAGTGTCACAGGAGGTGAAATTGCTAATGAGGAAAGCTAGGAGTGGGAAGCGACTGCTCCGACTCATTTaGCTCTTTCCTTTCAGTCTC +
Preference number: 2 (lower is better)
Translates to: PVSQEVKLLMRKARSGKRLLRLI*LFPFSL
Trigger: GAGACTGAAAGGAAAGAGCCAAATGAGTCGGAGCAG...TCGCTTCCCACTCCTAGCTTTCCTCATTAGCAATTTCACCTCCTGTGACACTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
3UTR-3UTR GCA 90 bp GGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCCTTGGGAGATCCATTTaGATATCTCCTTTATGTTTT +
Preference number: 2 (lower is better)
Translates to: GFTYALRCVSTPGRPALSLGRSI*ISPLCF
Trigger: AAAACATAAAGGAGATATGCAAATGGATCTCCCAAG...GGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCGTTCAGTGTTGTTCATaGGCAGCTTTTTGGTTGAAT +
Preference number: 2 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSVQCCS*AAFWLN
Trigger: ATTCAACCAAAAAGCTGCCCATGAACAACACTGAAC...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCAGAACATGAAGATCTaGATGACAAGAATGTCATGG +
Preference number: 2 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSQNMKI*MTRMSW
Trigger: CCATGACATTCTTGTCATCCAGATCTTCATGTTCTG...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGGGGTATGAGGAGCTGTaGCACAGGCTCAGCTCTGGA +
Preference number: 2 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLGYEEL*HRLSSG
Trigger: TCCAGAGCTGAGCCTGTGCCACAGCTCCTCATACCC...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGGTGTGTCAGCACTCCTaGGAGACCAGTTCTCTCCCG +
Preference number: 2 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLVCQHS*ETSSLP
Trigger: CGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACAC...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 90 bp GATCCCATTACATATGGTTGTGGGCCACCATGTGGTTGCTGGAAATaGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACT +
Preference number: 2 (lower is better)
Translates to: DPITYGCGPPCGCWK*NSGPLKEQSVLLTT
Trigger: AGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCACAACCATATGTAATGGGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR GCA 90 bp TGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTACATATGGTTGGTGGTTTCACCTATaGTCTCAGGTGTGTCAGCAC +
Preference number: 2 (lower is better)
Translates to: CGYLQTHQKRALDPITYGWWFHL*SQVCQH
Trigger: GTGCTGACACACCTGAGAGCATAGGTGAAACCACCA...ACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp TGGGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCATGAACCACAGCAAATaGAGCCAGATTATGGAAGAT +
Preference number: 2 (lower is better)
Translates to: WATMWLLEIELRTSERTVMNHSK*SQIMED
Trigger: ATCTTCCATAATCTGGCTTCATTTGCTGTGGTTCAT...GACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp ACACTGGCTTCTCTTCCAGAGAACCTGAATTCAGTTCTCAGCATCTACAAAGTGCTCACTGTGACTTGGTaGTTGTCTAGCAGATGTCTG +
Preference number: 2 (lower is better)
Translates to: TLASLPENLNSVLSIYKVLTVTW*LSSRCL
Trigger: CAGACATCTGCTAGACAATCACCAAGTCACAGTGAG...CACTTTGTAGATGCTGAGAACTGAATTCAGGTTCTCTGGAAGAGAAGCCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
3UTR-3UTR CCA 90 bp TTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACGATGTAGACGGAAACTaGAAGGATCTGTTCACTGGC +
Preference number: 2 (lower is better)
Translates to: LLEIELRTSERTVSALNHDVDGN*KDLFTG
Trigger: GCCAGTGAACAGATCCTTCCAGTTTCCGTCTACATC...GTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp TGGGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCCCAGAAGCACATGGGTaGTTTTATAATTCAGAATGT +
Preference number: 2 (lower is better)
Translates to: WATMWLLEIELRTSERTVPEAHG*FYNSEC
Trigger: ACATTCTGAATTATAAAATCACCCATGTGCTTCTGG...GACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp CCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGATGACAAGAATGTCATaGACCTTGTGTTCAGTGTTG +
Preference number: 2 (lower is better)
Translates to: PPCGCWKLNSGPLKEQSVMTRMS*TLCSVL
Trigger: CAACACTGAACACAAGGTCCATGACATTCTTGTCAT...CACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp CCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGTCCTTTATGTTTTGTTaGACTGAGTCACCAGAACAT +
Preference number: 2 (lower is better)
Translates to: PPCGCWKLNSGPLKEQSVSFMFC*TESPEH
Trigger: ATGTTCTGGTGACTCAGTTCAACAAAACATAAAGGA...CACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp TGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACTGAGCCTTCCAATGAGTTATaGCTGTCTTCTTGCAAGAGA +
Preference number: 2 (lower is better)
Translates to: WKLNSGPLKEQSVLLTTEPSNEL*LSSCKR
Trigger: TCTCTTGCAAGAAGACAGTCATAACTCATTGGAAGG...CTCAGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp TTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACCAGAACATGAAGATCTaGATGACAAGAATGTCATGG +
Preference number: 2 (lower is better)
Translates to: LLEIELRTSERTVSALNHQNMKI*MTRMSW
Trigger: CCATGACATTCTTGTCATCCAGATCTTCATGTTCTG...GTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR TCA 90 bp TATAAGTACACTGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTACGTTATTGCCCTTaGCTCTCAAAATCTGGTTAT +
Preference number: 2 (lower is better)
Translates to: YKYTVVIFRHTRRGHWIPLRYCP*LSKSGY
Trigger: ATAACCAGATTTTGAGAGTCAAGGGCAATAACGTAA...TGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACAGTGTACTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGTCTTGCAAGAGAGCTTaGGAGATCCATTTGCATATC +
Preference number: 2 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLSCKRA*EIHLHI
Trigger: GATATGCAAATGGATCTCCCAAGCTCTCTTGCAAGA...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGGAATTTGAGCAGAAGTaGTGGTTTCACCTATGCTCT +
Preference number: 2 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLEFEQK*WFHLCS
Trigger: AGAGCATAGGTGAAACCACCACTTCTGCTCAAATTC...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR GCA 90 bp TTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACCTTGGGAGATCCATTTaGATATCTCCTTTATGTTTT +
Preference number: 2 (lower is better)
Translates to: LLEIELRTSERTVSALNHLGRSI*ISPLCF
Trigger: AAAACATAAAGGAGATATGCAAATGGATCTCCCAAG...GTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CCA 90 bp CAGAATGTAATGATCAGTTGCCTTCCAATGAGTTATGACTGTCTTCTTGCAAGAAATGAAGCCAGATTATaGAAGATGCCAGAGAGCAGA +
Preference number: 2 (lower is better)
Translates to: QNVMISCLPMSYDCLLARNEARL*KMPESR
Trigger: TCTGCTCTCTGGCATCTTCCATAATCTGGCTTCATT...TCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR GCA 72 bp CTAGGAGTGGGAAGCGAAGGACCATGCAGAGCCAGGTaGACCCATCCCCAATGCTGGAGATACCCCGTTCTT +
Preference number: 3 (lower is better)
Translates to: LGVGSEGPCRAR*THPQCWRYPVL
Trigger: AAGAACGGGGTATCTCCAGCATTGGGGATGGGTGCACCTGGCTCTGCATGGTCCTTCGCTTCCCACTCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
3UTR CCA 72 bp TGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGTaGGATTTGGGTATGAGGAGCTGTGGCACAGGCTCA +
Preference number: 3 (lower is better)
Translates to: CVSTPGRPVLSR*DLGMRSCGTGS
Trigger: TGAGCCTGTGCCACAGCTCCTCATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp AGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATaGCACAGAGTCAGCTCTGGGGCACAGATGGAAACC +
Preference number: 3 (lower is better)
Translates to: SSLPAGFGYGEL*HRVSSGAQMET
Trigger: GGTTTCCATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp AGTTCTCTCCCGGTGGGATTTGGGTATGAGGAGCTGTaGCACAGGCTCAGCTCTGGATGTAGACGGAAACTG +
Preference number: 3 (lower is better)
Translates to: SSLPVGFGYEEL*HRLSSGCRRKL
Trigger: CAGTTTCCGTCTACATCCAGAGCTGAGCCTGTGCCACAGCTCCTCATACCCAAATCCCACCGGGAGAGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp TGTGGCACAGGCTCAGCTCTGGATGTAGACGGAAACTaGAAGGATCTGTTCACTGGCTGTTCCTTGGTCCCT +
Preference number: 3 (lower is better)
Translates to: CGTGSALDVDGN*KDLFTGCSLVP
Trigger: AGGGACCAAGGAACAGCCAGTGAACAGATCCTTCCAGTTTCCGTCTACATCCAGAGCTGAGCCTGTGCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR GCA 72 bp AACCAGGAATTTGAGCAGAAGTGGTGGTTTCACCTATaGTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGC +
Preference number: 3 (lower is better)
Translates to: NQEFEQKWWFHL*SQVCQHSWETS
Trigger: GCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCACTTCTGCTCAAATTCCTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp ACTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTaGGAGACCAGTTCTCTCCCGGTGGGATTTGGGTAT +
Preference number: 3 (lower is better)
Translates to: TCSSYKPVCQHS*ETSSLPVGFGY
Trigger: ATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp ATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTaGGGCACAGATGGAAACCAGAAGCACATGGGTGAT +
Preference number: 3 (lower is better)
Translates to: IWVWRAMAQSQL*GTDGNQKHMGD
Trigger: ATCACCCATGTGCTTCTGGTTTCCATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp CCTTGGTCCCTCTTCAACCAGGAATTTGAGCAGAAGTaGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCAC +
Preference number: 3 (lower is better)
Translates to: PWSLFNQEFEQK*WFHLCSQVCQH
Trigger: GTGCTGACACACCTGAGAGCATAGGTGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGAGGGACCAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp GGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCAGGAAGATACACATGTaGTGTATTAAATGGCCAGCA +
Preference number: 3 (lower is better)
Translates to: GFTYALRCVSTPGRPALSRKIHM*CIKWPA
Trigger: TGCTGGCCATTTAATACACAACATGTGTATCTTCCT...GGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCTCTTCAACCAGGAATTaGAGCAGAAGTGGTGGTTTC +
Preference number: 3 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSSSTRN*SRSGGF
Trigger: GAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGA...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp CCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGTTCACTGGCTGTTCCTaGGTCCCTCTTCAACCAGGA +
Preference number: 3 (lower is better)
Translates to: PPCGCWKLNSGPLKEQSVFTGCS*VPLQPG
Trigger: TCCTGGTTGAAGAGGGACCAAGGAACAGCCAGTGAA...CACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR TCA 72 bp ACTGGCTGTTCCTTGGTCCCTCTTCAACCAGGAATTTaGGCAGAAGTGGTGGTTTCACCTATGCTCTCAGGT +
Preference number: 3 (lower is better)
Translates to: TGCSLVPLQPGI*AEVVVSPMLSG
Trigger: ACCTGAGAGCATAGGTGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGAGGGACCAAGGAACAGCCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp ACGGAAACTGGAAGGATCTGTTCACTGGCTGTTCCTTaGTCCCTCTTCAACCAGGAATTTGAGCAGAAGTGG +
Preference number: 3 (lower is better)
Translates to: TETGRICSLAVP*SLFNQEFEQKW
Trigger: CCACTTCTGCTCAAATTCCTGGTTGAAGAGGGACCAAGGAACAGCCAGTGAACAGATCCTTCCAGTTTCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCTTCTTGCAAGAGAGCTaGGGAGATCCATTTGCATAT +
Preference number: 3 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSFLQES*GDPFAY
Trigger: ATATGCAAATGGATCTCCCAAGCTCTCTTGCAAGAA...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp ACTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCTCTTCAACCAGGAATTaGAGCAGAAGTGGTGGTTTC +
Preference number: 3 (lower is better)
Translates to: TCSSYKPVCQHSWETSSLSSTRN*SRSGGF
Trigger: GAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGA...GAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp GACACACCAGAAGAGGGCATTGGATCCCATTACATATaGTTGTGGGCCACCATGTGGTTGCTGGAAATTGAA +
Preference number: 3 (lower is better)
Translates to: DTPEEGIGSHYI*LWATMWLLEIE
Trigger: TTCAATTTCCAGCAACCACATGGTGGCCCACAACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp ACTGTGGTTATCTTCAGACACACCAGAAGAGGGCATTaGATCCCATTACATATGGTTGTGGGCCACCATGTG +
Preference number: 3 (lower is better)
Translates to: TVVIFRHTRRGH*IPLHMVVGHHV
Trigger: CACATGGTGGCCCACAACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp TATAAGTACACTGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCATGGGCCACCATGTGGTaGCTGGAAATTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: YKYTVVIFRHTRRGHWIPWATMW*LEIELR
Trigger: CCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCA...TGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACAGTGTACTTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp TGGGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGGAAGATACACATGTaGTGTATTAAATGGCCAGCA +
Preference number: 3 (lower is better)
Translates to: WATMWLLEIELRTSERTVRKIHM*CIKWPA
Trigger: TGCTGGCCATTTAATACACAACATGTGTATCTTCCT...GACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp CCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGGCTTGGGAGATCCATTaGCATATCTCCTTTATGTTT +
Preference number: 3 (lower is better)
Translates to: PPCGCWKLNSGPLKEQSVAWEIH*HISFMF
Trigger: AAACATAAAGGAGATATGCAAATGGATCTCCCAAGC...CACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR TCA 72 bp AATCCATGTAGGATTCTGGGACTCACTGTGACTTGGTaGTTGTCTAGCAGATGTCTGAAAAATGTGGACCCA +
Preference number: 3 (lower is better)
Translates to: NPCRILGLTVTW*LSSRCLKNVDP
Trigger: TGGGTCCACATTTTTCAGACATCTGCTAGACAATCACCAAGTCACAGTGAGTCCCAGAATCCTACATGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
3UTR-3UTR CAA 90 bp TTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACTTCTTGCAAGAGAGCTaGGGAGATCCATTTGCATAT +
Preference number: 3 (lower is better)
Translates to: LLEIELRTSERTVSALNHFLQES*GDPFAY
Trigger: ATATGCAAATGGATCTCCCAAGCTCTCTTGCAAGAA...GTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR-3UTR CAA 90 bp TGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTACATATGGTCTGTTGCTTACGTTATaGCCCTTGACTCTCAAAATC +
Preference number: 3 (lower is better)
Translates to: CGYLQTHQKRALDPITYGLLLTL*PLTLKI
Trigger: GATTTTGAGAGTCAAGGGCAATAACGTAAGCAACAG...ACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR TCA 72 bp CAGTGTTGTTCATGGGCAGCTTTTTGGTTGAATGAATaGACCACAGCAAATGAAGCCAGATTATGGAAGATG +
Preference number: 3 (lower is better)
Translates to: QCCSWAAFWLNE*TTANEARLWKM
Trigger: CATCTTCCATAATCTGGCTTCATTTGCTGTGGTTCATTCATTCAACCAAAAAGCTGCCCATGAACAACACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR TCA 72 bp TCAGAATGTAATGATCAGTTGCCTTCCAATGAGTTATaGCTGTCTTCTTGCAAGAGAGCTTGGGAGATCCAT +
Preference number: 3 (lower is better)
Translates to: SECNDQLPSNEL*LSSCKRAWEIH
Trigger: ATGGATCTCCCAAGCTCTCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR GCA 72 bp AATGAACCACAGCAAATGAAGCCAGATTATGGAAGATaGCAGAGAGCAGAAAGGAAGATACACATGTTGTGT +
Preference number: 3 (lower is better)
Translates to: NEPQQMKPDYGR*QRAERKIHMLC
Trigger: ACACAACATGTGTATCTTCCTTTCTGCTCTCTGGCATCTTCCATAATCTGGCTTCATTTGCTGTGGTTCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CCA 72 bp CTGTTGCTTACGTTATTGCCCTTGACTCTCAAAATCTaGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCT +
Preference number: 3 (lower is better)
Translates to: LLLTLLPLTLKI*LSVVLAGFAVS
Trigger: AGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTTGAGAGTCAAGGGCAATAACGTAAGCAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGAATGCCCGGACCCCCTaGGGCCCCAGGCCACGGTGC +
Preference number: 4 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRNARTP*GPRPRC
Trigger: GCACCGTGGCCTGGGGCCCCAGGGGGTCCGGGCATT...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCAATGCCCGGACCCCCTaGGGCCCCAGGCCACGGTGC +
Preference number: 4 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSNARTP*GPRPRC
Trigger: GCACCGTGGCCTGGGGCCCCAGGGGGTCCGGGCATT...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp GGACCATGCAGAGCCAGGTGCACCCATCCCCAATGCTGGAGATACCCCGTTCTTATCAGCCAGAGCCTCTaGTCCAGCACCACAGAGCCC +
Preference number: 4 (lower is better)
Translates to: GPCRARCTHPQCWRYPVLISQSL*SSTTEP
Trigger: GGGCTCTGTGGTGCTGGAGCAGAGGCTCTGGCTGAT...AAGAACGGGGTATCTCCAGCATTGGGGATGGGTGCACCTGGCTCTGCATGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CCA 90 bp AGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTGGGGCACAGATCTCGGGCAAACGCGGTaGCTCCCAGACCTCGCAGGT +
Preference number: 4 (lower is better)
Translates to: SGIWVWRAMAQSQLWGTDLGQTR*LPDLAG
Trigger: ACCTGCGAGGTCTGGGAGCCACCGCGTTTGCCCGAG...ATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 72 bp AGCACTCCTGGGAGACCAGTTCTCTCCCGGTGGGATTaGGGTATGAGGAGCTGTGGCACAGGCTCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: STPGRPVLSRWD*GMRSCGTGSAL
Trigger: CAGAGCTGAGCCTGTGCCACAGCTCCTCATACCCAAATCCCACCGGGAGAGAACTGGTCTCCCAGGAGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp GACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGGGCCCCAGGCCACGGTaGCGAAGGTTCAATTCAGAG +
Preference number: 4 (lower is better)
Translates to: DQLSPSGIWVWRAMAQSQGPRPR*RRFNSE
Trigger: CTCTGAATTGAACCTTCGGCACCGTGGCCTGGGGCC...CTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTATCAGCCAGAGCCTCTaGTCCAGCACCACAGAGCCC +
Preference number: 4 (lower is better)
Translates to: PALSQRDLGMESYGTESAISQSL*SSTTEP
Trigger: GGGCTCTGTGGTGCTGGAGCAGAGGCTCTGGCTGAT...AGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp AGGAGTGGGAAGCGAAGGACCATGCAGAGCCAGGTGCACCCATCCCCAATGCTGCCTGCAGCTCCAATCTaGTTCTCTGACAGGTCCACA +
Preference number: 4 (lower is better)
Translates to: RSGKRRTMQSQVHPSPMLPAAPI*FSDRST
Trigger: TGTGGACCTGTCAGAGAATCAGATTGGAGCTGCAGG...CAGCATTGGGGATGGGTGCACCTGGCTCTGCATGGTCCTTCGCTTCCCACTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp AGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTGGGGCACAGATGGCCCCAGGCCACGGTaGCGAAGGTTCAATTCAGAG +
Preference number: 4 (lower is better)
Translates to: SGIWVWRAMAQSQLWGTDGPRPR*RRFNSE
Trigger: CTCTGAATTGAACCTTCGGCACCGTGGCCTGGGGCC...ATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp TGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGCAGTGCAGATCGCCTaGAGCCCTGCAGCTCCAATC +
Preference number: 4 (lower is better)
Translates to: CSSYKPVCQHSWETSSLPAVQIA*SPAAPI
Trigger: GATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGC...CGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp TTGGAGATGGTTCGGTGGCTAGGAACACTGGCTTCTCTTCCAGAGAACCTGAATCTCGGGCAAACGCGGTaGCTCCCAGACCTCGCAGGT +
Preference number: 4 (lower is better)
Translates to: LEMVRWLGTLASLPENLNLGQTR*LPDLAG
Trigger: ACCTGCGAGGTCTGGGAGCCACCGCGTTTGCCCGAG...ATTCAGGTTCTCTGGAAGAGAAGCCAGTGTTCCTAGCCACCGAACCATCTCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CCA 90 bp GGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCACTTGGTGCAGATGCTaGCTGGGATGGTGTAGAGGC +
Preference number: 4 (lower is better)
Translates to: GFTYALRCVSTPGRPALSTWCRC*LGWCRG
Trigger: GCCTCTACACCATCCCAGCCAGCATCTGCACCAAGT...GGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGTTCCAGAGCAGAGTGTaGATCTGCAGTCCAGGACCT +
Preference number: 4 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRFQSRV*ICSPGP
Trigger: AGGTCCTGGACTGCAGATTCACACTCTGCTCTGGAA...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp ACTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCATCAGCCAGAGCCTCTaGTCCAGCACCACAGAGCCC +
Preference number: 4 (lower is better)
Translates to: TCSSYKPVCQHSWETSSLISQSL*SSTTEP
Trigger: GGGCTCTGTGGTGCTGGAGCAGAGGCTCTGGCTGAT...GAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp AGGAGTGGGAAGCGAAGGACCATGCAGAGCCAGGTGCACCCATCCCCAATGCTGGAGTCCTGTGTTTTCTaGCACAGCAGGTCCAAGTAT +
Preference number: 4 (lower is better)
Translates to: RSGKRRTMQSQVHPSPMLESCVF*HSRSKY
Trigger: ATACTTGGACCTGCTGTGGCAGAAAACACAGGACTC...CAGCATTGGGGATGGGTGCACCTGGCTCTGCATGGTCCTTCGCTTCCCACTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CCA 90 bp AGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTGGGGCACAGATCGTTCTCCAAGCCCATaGGTGCCTTCTGCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: SGIWVWRAMAQSQLWGTDRSPSP*VPSASR
Trigger: TCTGGAAGCAGAAGGCACCCATGGGCTTGGAGAACG...ATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CCTGAATTCAGTTCTCAGCATCTACAAAGTGGGTTTCAACTGCCTGTAACACAAAATGCCCGGACCCCCTaGGGCCCCAGGCCACGGTGC +
Preference number: 4 (lower is better)
Translates to: PEFSSQHLQSGFQLPVTQNARTP*GPRPRC
Trigger: GCACCGTGGCCTGGGGCCCCAGGGGGTCCGGGCATT...TTGTGTTACAGGCAGTTGAAACCCACTTTGTAGATGCTGAGAACTGAATTCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CCA 90 bp AGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCTGGGGCACAGATAGATGCTGGCTGGGATaGTGTAGAGGCTTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: SGIWVWRAMAQSQLWGTDRCWLG*CRGLWP
Trigger: TGGCCACAAGCCTCTACACCATCCCAGCCAGCATCT...ATCTGTGCCCCAGAGCTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp TGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGTTCCAGAGCAGAGTGTaGATCTGCAGTCCAGGACCT +
Preference number: 4 (lower is better)
Translates to: CSSYKPVCQHSWETSSLPFQSRV*ICSPGP
Trigger: AGGTCCTGGACTGCAGATTCACACTCTGCTCTGGAA...CGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp GACAGCACCCACAGTCCCAGCACTCAGGAGGTAAGAACAGGAGGATTAACAGTTCTCCAAGCCCATGGGTaGCTTCTGCTTCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: DSTHSPSTQEVRTGGLTVLQAHG*LLLPEQ
Trigger: CTGCTCTGGAAGCAGAAGGCACCCATGGGCTTGGAG...AACTGTTAATCCTCCTGTTCTTACCTCCTGAGTGCTGGGACTGTGGGTGCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp ACTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCAGAAGAGCAGCGAGGTaGTGGGCTGCTTGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: TCSSYKPVCQHSWETSSLRRAAR*WAACSS
Trigger: GGAGGAACAAGCAGCCCAGCACCTCGCTGCTCTTCT...GAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATGGGCAGCTTCTCGGGCAAACGCGGTaGCTCCCAGACCTCGCAGGT +
Preference number: 4 (lower is better)
Translates to: LDDKNVMDLVFSVVHGQLLGQTR*LPDLAG
Trigger: ACCTGCGAGGTCTGGGAGCCACCGCGTTTGCCCGAG...AAGCTGCCCATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCGGTGCAGATGCTGGCTaGGATGGTGTAGAGGCTTGT +
Preference number: 4 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSGADAG*DGVEAC
Trigger: ACAAGCCTCTACACCATCCCAGCCAGCATCTGCACC...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp ACCCACAGTCCCAGCACTCAGGAGGTAAGAACAGGAGGATTAACAGTTCCACACGATCGCCTGGAGCCCTaGAGCTCCAATCTGATTCTC +
Preference number: 4 (lower is better)
Translates to: THSPSTQEVRTGGLTVPHDRLEP*SSNLIL
Trigger: GAGAATCAGATTGGAGCTGCAGGGCTCCAGGCGATC...GTGTGGAACTGTTAATCCTCCTGTTCTTACCTCCTGAGTGCTGGGACTGTGGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp GGACCATGCAGAGCCAGGTGCACCCATCCCCAATGCTGGAGATACCCCGTTCTTTCCAAGTATCTCTCCTaGCAGGTCATTGAGCTGATT +
Preference number: 4 (lower is better)
Translates to: GPCRARCTHPQCWRYPVLSKYLS*QVIELI
Trigger: AATCAGCTCAATGACCTGGCAGGAGAGATACTTGGA...AAGAACGGGGTATCTCCAGCATTGGGGATGGGTGCACCTGGCTCTGCATGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGGAGTCCTGTGTTTTCTaGCACAGCAGGTCCAAGTAT +
Preference number: 4 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRESCVF*HSRSKY
Trigger: ATACTTGGACCTGCTGTGGCAGAAAACACAGGACTC...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp TGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTGGCACAACACTATTaGCCCGGCAAGACTTCAGAT +
Preference number: 4 (lower is better)
Translates to: WWFHLCSQVCQHSWETSSLAQHY*PGKTSD
Trigger: ATCTGAAGTCTTGCCGGGCCAATAGTGTTGTGCCAG...AGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp GGATGTAGACGGAAACTGGAAGGATCTGTTCACTGGCTGTTCCTTGGTCCCTCTACTTGGTGCAGATGCTaGCTGGGATGGTGTAGAGGC +
Preference number: 4 (lower is better)
Translates to: GCRRKLEGSVHWLFLGPSTWCRC*LGWCRG
Trigger: GCCTCTACACCATCCCAGCCAGCATCTGCACCAAGT...AGAGGGACCAAGGAACAGCCAGTGAACAGATCCTTCCAGTTTCCGTCTACATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGTCCAATCTGATTCTCTaGCAGGTCCACATCAGAGAT +
Preference number: 4 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRSNLIL*QVHIRD
Trigger: ATCTCTGATGTGGACCTGTCAGAGAATCAGATTGGA...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCTGTTCCCTTGCAGCTaGATCTTCTCAACAGTTGGG +
Preference number: 4 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSLFPCS*IFSTVG
Trigger: CCCAACTGTTGAGAAGATGCAGCTGCAAGGGAACAG...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CATTTGGCTCTTTCCTTTCAGTCTCTGCTATTACTGTGTCTAGGGTCCCCTCTCAGAAGAGCAGCGAGGTaGTGGGCTGCTTGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: HLALSFQSLLLLCLGSPLRRAAR*WAACSS
Trigger: GGAGGAACAAGCAGCCCAGCACCTCGCTGCTCTTCT...GAGAGGGGACCCTAGACACAGTAATAGCAGAGACTGAAAGGAAAGAGCCAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCTGGCACAACACTATTaGCCCGGCAAGACTTCAGAT +
Preference number: 4 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSLAQHY*PGKTSD
Trigger: ATCTGAAGTCTTGCCGGGCCAATAGTGTTGTGCCAG...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGTGGTGTAGAGGCTTGTaGCCAGTCTTTTCTTCTAGA +
Preference number: 4 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRWCRGL*PVFSSR
Trigger: TCTAGAAGAAAAGACTGGCCACAAGCCTCTACACCA...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp TGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGTCCAAGTATCTCTCCTaGCAGGTCATTGAGCTGATT +
Preference number: 4 (lower is better)
Translates to: CSSYKPVCQHSWETSSLPSKYLS*QVIELI
Trigger: AATCAGCTCAATGACCTGGCAGGAGAGATACTTGGA...CGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp TGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTTCCAAGTATCTCTCCTaGCAGGTCATTGAGCTGATT +
Preference number: 4 (lower is better)
Translates to: WWFHLCSQVCQHSWETSSSKYLS*QVIELI
Trigger: AATCAGCTCAATGACCTGGCAGGAGAGATACTTGGA...AGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp GGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCGGTCCTCACATTCTCTaGTTACTTGGATATCAGACA +
Preference number: 4 (lower is better)
Translates to: GFTYALRCVSTPGRPALSGPHIL*LLGYQT
Trigger: TGTCTGATATCCAAGTAAGCAGAGAATGTGAGGACC...GGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp TGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTACATATGGTGCAGTGCAGATCGCCTaGAGCCCTGCAGCTCCAATC +
Preference number: 4 (lower is better)
Translates to: CGYLQTHQKRALDPITYGAVQIA*SPAAPI
Trigger: GATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGC...ACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 72 bp CACTGGCTGTTCCTTGGTCCCTCTTCAACCAGGAATTaGAGCAGAAGTGGTGGTTTCACCTATGCTCTCAGG +
Preference number: 4 (lower is better)
Translates to: HWLFLGPSSTRN*SRSGGFTYALR
Trigger: CCTGAGAGCATAGGTGAAACCACCACTTCTGCTCAAATTCCTGGTTGAAGAGGGACCAAGGAACAGCCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCTCCAATCTGATTCTCTaGCAGGTCCACATCAGAGAT +
Preference number: 4 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSSNLIL*QVHIRD
Trigger: ATCTCTGATGTGGACCTGTCAGAGAATCAGATTGGA...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp TGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACTGAGCTCCAAGCCCATGGGTaGCTTCTGCTTCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: WKLNSGPLKEQSVLLTTELQAHG*LLLPEQ
Trigger: CTGCTCTGGAAGCAGAAGGCACCCATGGGCTTGGAG...CTCAGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATGGGCAGCTTGATCGCCTGGAGCCCTaGAGCTCCAATCTGATTCTC +
Preference number: 4 (lower is better)
Translates to: LDDKNVMDLVFSVVHGQLDRLEP*SSNLIL
Trigger: GAGAATCAGATTGGAGCTGCAGGGCTCCAGGCGATC...AAGCTGCCCATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CCTGAATTCAGTTCTCAGCATCTACAAAGTGGGTTTCAACTGCCTGTAACACAAGCAGTGCAGATCGCCTaGAGCCCTGCAGCTCCAATC +
Preference number: 4 (lower is better)
Translates to: PEFSSQHLQSGFQLPVTQAVQIA*SPAAPI
Trigger: GATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGC...TTGTGTTACAGGCAGTTGAAACCCACTTTGTAGATGCTGAGAACTGAATTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp CTACAAAGTGGGTTTCAACTGCCTGTAACACAAGTCTCAGGGGATCTGACACCTCTGTTCCCTTGCAGCTaGATCTTCTCAACAGTTGGG +
Preference number: 4 (lower is better)
Translates to: LQSGFQLPVTQVSGDLTPLFPCS*IFSTVG
Trigger: CCCAACTGTTGAGAAGATGCAGCTGCAAGGGAACAG...AGGTGTCAGATCCCCTGAGACTTGTGTTACAGGCAGTTGAAACCCACTTTGTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
3UTR CAA 72 bp ACACCAGAAGAGGGCATTGGATCCCATTACATATGGTaGTGGGCCACCATGTGGTTGCTGGAAATTGAACTC +
Preference number: 4 (lower is better)
Translates to: TPEEGIGSHYIW*WATMWLLEIEL
Trigger: GAGTTCAATTTCCAGCAACCACATGGTGGCCCACAACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 72 bp CACTGTGGTTATCTTCAGACACACCAGAAGAGGGCATaGGATCCCATTACATATGGTTGTGGGCCACCATGT +
Preference number: 4 (lower is better)
Translates to: HCGYLQTHQKRA*DPITYGCGPPC
Trigger: ACATGGTGGCCCACAACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp TATAAGTACACTGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCACCTGCAGCTCCAATCTaGTTCTCTGACAGGTCCACA +
Preference number: 4 (lower is better)
Translates to: YKYTVVIFRHTRRGHWIPPAAPI*FSDRST
Trigger: TGTGGACCTGTCAGAGAATCAGATTGGAGCTGCAGG...TGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACAGTGTACTTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CATGAAGATCTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATCTCCAAGCCCATGGGTaGCTTCTGCTTCCAGAGCAG +
Preference number: 4 (lower is better)
Translates to: HEDLDDKNVMDLVFSVVHLQAHG*LLLPEQ
Trigger: CTGCTCTGGAAGCAGAAGGCACCCATGGGCTTGGAG...ATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAGATCTTCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp ATGAATGAACCACAGCAAATGAAGCCAGATTATGGAAGATGCCAGAGAGCAGAACGTTCTCCAAGCCCATaGGTGCCTTCTGCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: MNEPQQMKPDYGRCQRAERSPSP*VPSASR
Trigger: TCTGGAAGCAGAAGGCACCCATGGGCTTGGAGAACG...TTCTGCTCTCTGGCATCTTCCATAATCTGGCTTCATTTGCTGTGGTTCATTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp GGTAAGAACAGGAGGATTAACAGTTCCACACTAATTACCAAGTTAAGAGGCCAGTTCCAGAGCAGAGTGTaGATCTGCAGTCCAGGACCT +
Preference number: 4 (lower is better)
Translates to: GKNRRINSSTLITKLRGQFQSRV*ICSPGP
Trigger: AGGTCCTGGACTGCAGATTCACACTCTGCTCTGGAA...CTGGCCTCTTAACTTGGTAATTAGTGTGGAACTGTTAATCCTCCTGTTCTTACC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp CATGAAGATCTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATGATCGCCTGGAGCCCTaGAGCTCCAATCTGATTCTC +
Preference number: 4 (lower is better)
Translates to: HEDLDDKNVMDLVFSVVHDRLEP*SSNLIL
Trigger: GAGAATCAGATTGGAGCTGCAGGGCTCCAGGCGATC...ATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAGATCTTCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CAGAATGTAATGATCAGTTGCCTTCCAATGAGTTATGACTGTCTTCTTGCAAGAAGAAGAGCAGCGAGGTaGTGGGCTGCTTGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: QNVMISCLPMSYDCLLARRRAAR*WAACSS
Trigger: GGAGGAACAAGCAGCCCAGCACCTCGCTGCTCTTCT...TCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CACTCAGGAGGTAAGAACAGGAGGATTAACAGTTCCACACTAATTACCAAGTTACGTTCTCCAAGCCCATaGGTGCCTTCTGCTTCCAGA +
Preference number: 4 (lower is better)
Translates to: HSGGKNRRINSSTLITKLRSPSP*VPSASR
Trigger: TCTGGAAGCAGAAGGCACCCATGGGCTTGGAGAACG...TAACTTGGTAATTAGTGTGGAACTGTTAATCCTCCTGTTCTTACCTCCTGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CCA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGAGATGCTGGCTGGGATaGTGTAGAGGCTTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLRCWLG*CRGLWP
Trigger: TGGCCACAAGCCTCTACACCATCCCAGCCAGCATCT...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp CATGAAGATCTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATGGTGCAGATGCTGGCTaGGATGGTGTAGAGGCTTGT +
Preference number: 4 (lower is better)
Translates to: HEDLDDKNVMDLVFSVVHGADAG*DGVEAC
Trigger: ACAAGCCTCTACACCATCCCAGCCAGCATCTGCACC...ATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAGATCTTCATG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
3UTR CAA 72 bp GGATCCCATTACATATGGTTGTGGGCCACCATGTGGTaGCTGGAAATTGAACTCAGGACCTCTGAAAGAACA +
Preference number: 4 (lower is better)
Translates to: GSHYIWLWATMW*LEIELRTSERT
Trigger: TGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGGCCCACAACCATATGTAATGGGATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp CTACAAAGTGGGTTTCAACTGCCTGTAACACAAGTCTCAGGGGATCTGACACCTTCTCCAAAGCCATTATaGGAGATGTCTAGGACTTTC +
Preference number: 4 (lower is better)
Translates to: LQSGFQLPVTQVSGDLTPSPKPL*EMSRTF
Trigger: GAAAGTCCTAGACATCTCTCATAATGGCTTTGGAGA...AGGTGTCAGATCCCCTGAGACTTGTGTTACAGGCAGTTGAAACCCACTTTGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR GCA 90 bp TTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACGAGTCCTGTGTTTTCTaGCACAGCAGGTCCAAGTAT +
Preference number: 4 (lower is better)
Translates to: LLEIELRTSERTVSALNHESCVF*HSRSKY
Trigger: ATACTTGGACCTGCTGTGGCAGAAAACACAGGACTC...GTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp CAGAATGTAATGATCAGTTGCCTTCCAATGAGTTATGACTGTCTTCTTGCAAGAACCAGAGTCACTTGGTaGAGATGCTGGCTGGGATGG +
Preference number: 4 (lower is better)
Translates to: QNVMISCLPMSYDCLLARTRVTW*RCWLGW
Trigger: CCATCCCAGCCAGCATCTGCACCAAGTGACTCTGGT...TCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp CAGAATGTAATGATCAGTTGCCTTCCAATGAGTTATGACTGTCTTCTTGCAAGACCTGCAGCTCCAATCTaGTTCTCTGACAGGTCCACA +
Preference number: 4 (lower is better)
Translates to: QNVMISCLPMSYDCLLARPAAPI*FSDRST
Trigger: TGTGGACCTGTCAGAGAATCAGATTGGAGCTGCAGG...TCTTGCAAGAAGACAGTCATAACTCATTGGAAGGCAACTGATCATTACATTCTG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR GCA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGCTGTTCCCTTGCAGCTaGATCTTCTCAACAGTTGGG +
Preference number: 4 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLLFPCS*IFSTVG
Trigger: CCCAACTGTTGAGAAGATGCAGCTGCAAGGGAACAG...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CCA 90 bp TGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACTGAGTGGTGTAGAGGCTTGTaGCCAGTCTTTTCTTCTAGA +
Preference number: 4 (lower is better)
Translates to: WKLNSGPLKEQSVLLTTEWCRGL*PVFSSR
Trigger: TCTAGAAGAAAAGACTGGCCACAAGCCTCTACACCA...CTCAGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp TGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACTGAGTCTCCAAAGCCATTATaGGAGATGTCTAGGACTTTC +
Preference number: 4 (lower is better)
Translates to: WKLNSGPLKEQSVLLTTESPKPL*EMSRTF
Trigger: GAAAGTCCTAGACATCTCTCATAATGGCTTTGGAGA...CTCAGTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR TCA 90 bp TGTGGTTATCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTACATATGGTTCTCCAAAGCCATTATaGGAGATGTCTAGGACTTTC +
Preference number: 4 (lower is better)
Translates to: CGYLQTHQKRALDPITYGSPKPL*EMSRTF
Trigger: GAAAGTCCTAGACATCTCTCATAATGGCTTTGGAGA...ACCATATGTAATGGGATCCAATGCCCTCTTCTGGTGTGTCTGAAGATAACCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp AGGACCATGCAGAGCCAGGTGCACCCATCCCCAATGCTGGAGATACCCCGTTCTGAGGTGCTGGGCTGCTaGTTCCTCCAGCCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: RTMQSQVHPSPMLEIPRSEVLGC*FLQPVP
Trigger: GGGAACAGGCTGGAGGAACAAGCAGCCCAGCACCTC...AGAACGGGGTATCTCCAGCATTGGGGATGGGTGCACCTGGCTCTGCATGGTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS TCA 90 bp CCGTTCTCCAAGCCCATGGGTGCCTTCTGCTTCCAGAGCAGAGTGTaGATCTGCAGTCCAGGACCTTTCGGCCTCCAGGGTCTCTGCCTG +
Preference number: 5 (lower is better)
Translates to: PFSKPMGAFCFQSRV*ICSPGPFGLQGLCL
Trigger: CAGGCAGAGACCCTGGAGGCCGAAAGGTCCTGGACTGCAGATTCACACTCTGCTCTGGAAGCAGAAGGCACCCATGGGCTTGGAGAACGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS TCA 90 bp GCCTCCAGGCCTCGGGCAAACGCGGTGGCTCCCAGACCTCGCAGGTaGTTCCAACTGAGGTTAAGCTCTGTGAGTCCTGTGTTTTCTGCC +
Preference number: 5 (lower is better)
Translates to: ASRPRANAVAPRPRR*FQLRLSSVSPVFSA
Trigger: GGCAGAAAACACAGGACTCACAGAGCTTAACCTCAGTTGGAATCACCTGCGAGGTCTGGGAGCCACCGCGTTTGCCCGAGGCCTGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS-3UTR CAA 90 bp GACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGGAGGTGCTGGGCTGCTaGTTCCTCCAGCCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: DQLSPSGIWVWRAMAQSQEVLGC*FLQPVP
Trigger: GGGAACAGGCTGGAGGAACAAGCAGCCCAGCACCTC...CTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp GGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTCCAGAGACCAGAGTCACTaGGTGCAGATGCTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: GFTYALRCVSTPGRPALSRDQSH*VQMLAG
Trigger: CCCAGCCAGCATCTGCACCAAGTGACTCTGGTCTCT...GGAGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp GACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGCTCCAGCCTGTTCCCTaGCAGCTGCATCTTCTCAAC +
Preference number: 5 (lower is better)
Translates to: DQLSPSGIWVWRAMAQSQLQPVP*QLHLLN
Trigger: GTTGAGAAGATGCAGCTGCAAGGGAACAGGCTGGAG...CTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp GGATGTAGACGGAAACTGGAAGGATCTGTTCACTGGCTGTTCCTTGGTCCCTCTGCACCACAGAGCCCATaGTCCCGAAGATCCAGACGC +
Preference number: 5 (lower is better)
Translates to: GCRRKLEGSVHWLFLGPSAPQSP*SRRSRR
Trigger: GCGTCTGGATCTTCGGGACAATGGGCTCTGTGGTGC...AGAGGGACCAAGGAACAGCCAGTGAACAGATCCTTCCAGTTTCCGTCTACATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp AGTCTCAGGGGATCTGACACCTTCTTCTTGCCCCCAAGGGTACCGGGCATACATCTCCAGCCTGTTCCCTaGCAGCTGCATCTTCTCAAC +
Preference number: 5 (lower is better)
Translates to: SLRGSDTFFLPPRVPGIHLQPVP*QLHLLN
Trigger: GTTGAGAAGATGCAGCTGCAAGGGAACAGGCTGGAG...ATGTATGCCCGGTACCCTTGGGGGCAAGAAGAAGGTGTCAGATCCCCTGAGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS TCA 90 bp GGCAGTGCAGATCGCCTGGAGCCCTGCAGCTCCAATCTGATTCTCTaGCAGGTCCACATCAGAGATAATGCTGTTCTTACGCAGGACATC +
Preference number: 5 (lower is better)
Translates to: GSADRLEPCSSNLIL*QVHIRDNAVLTQDI
Trigger: GATGTCCTGCGTAAGAACAGCATTATCTCTGATGTGGACCTGTCAGAGAATCAGATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS GCA 90 bp ATCAGAGATAATGCTGTTCTTACGCAGGACATCAGCCAGAGCCTCTaGTCCAGCACCACAGAGCCCATTGTCCCGAAGATCCAGACGCTT +
Preference number: 5 (lower is better)
Translates to: IRDNAVLTQDISQSL*SSTTEPIVPKIQTL
Trigger: AAGCGTCTGGATCTTCGGGACAATGGGCTCTGTGGTGCTGGAGCAGAGGCTCTGGCTGATGTCCTGCGTAAGAACAGCATTATCTCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS GCA 90 bp CTTGCAGCTGCATCTTCTCAACAGTTGGGTTTAAGGCAAGGGCAGTaGAGATCGCCTGGAGCCCTGCAGCTCCAATCTGATTCTCTGACA +
Preference number: 5 (lower is better)
Translates to: LAAASSQQLGLRQGQ*RSPGALQLQSDSLT
Trigger: TGTCAGAGAATCAGATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGCCCTTGCCTTAAACCCAACTGTTGAGAAGATGCAGCTGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS-3UTR CAA 90 bp CTTGTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCACTGGCACAACACTATaGGCCCGGCAAGACTTCAGA +
Preference number: 5 (lower is better)
Translates to: LVPPISLCVSTPGRPVLSTGTTL*ARQDFR
Trigger: TCTGAAGTCTTGCCGGGCCAATAGTGTTGTGCCAGT...GGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp CCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGAGAGACCAGAGTCACTaGGTGCAGATGCTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: PPCGCWKLNSGPLKEQSVRDQSH*VQMLAG
Trigger: CCCAGCCAGCATCTGCACCAAGTGACTCTGGTCTCT...CACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS GCA 90 bp CAGGTGATTCCAACTGAGGTTAAGCTCTGTGAGTCCTGTGTTTTCTaGCACAGCAGGTCCAAGTATCTCTCCTGCCAGGTCATTGAGCTG +
Preference number: 5 (lower is better)
Translates to: QVIPTEVKLCESCVF*HSRSKYLSCQVIEL
Trigger: CAGCTCAATGACCTGGCAGGAGAGATACTTGGACCTGCTGTGGCAGAAAACACAGGACTCACAGAGCTTAACCTCAGTTGGAATCACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CCA 90 bp AAGGTTCAATTCAGAGGCACCCTCTTGGCGCAGAAGACAAGAAACTaGCACAACACTATTGGCCCGGCAAGACTTCAGATAGAGGGTAGC +
Preference number: 5 (lower is better)
Translates to: KVQFRGTLLAQKTRN*HNTIGPARLQIEGS
Trigger: GCTACCCTCTATCTGAAGTCTTGCCGGGCCAATAGTGTTGTGCCAGTTTCTTGTCTTCTGCGCCAAGAGGGTGCCTCTGAATTGAACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS-3UTR CAA 90 bp TTGCTGGAAATTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCTTAACCACGCACCACAGAGCCCATaGTCCCGAAGATCCAGACGC +
Preference number: 5 (lower is better)
Translates to: LLEIELRTSERTVSALNHAPQSP*SRRSRR
Trigger: GCGTCTGGATCTTCGGGACAATGGGCTCTGTGGTGC...GTGGTTAAGAGCACTGACTGTTCTTTCAGAGGTCCTGAGTTCAATTTCCAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp GACCAGCTCTCTCCCAGCGGGATTTGGGTATGGAGAGCTATGGCACAGAGTCAGAGTTCTTCTAAAACATaGTTGACCCTGAGGGCATCA +
Preference number: 5 (lower is better)
Translates to: DQLSPSGIWVWRAMAQSQSSSKT*LTLRAS
Trigger: TGATGCCCTCAGGGTCAACAATGTTTTAGAAGAACT...CTGACTCTGTGCCATAGCTCTCCATACCCAAATCCCGCTGGGAGAGAGCTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp CCTGAATTCAGTTCTCAGCATCTACAAAGTGGGTTTCAACTGCCTGTAACACAAGCACCACAGAGCCCATaGTCCCGAAGATCCAGACGC +
Preference number: 5 (lower is better)
Translates to: PEFSSQHLQSGFQLPVTQAPQSP*SRRSRR
Trigger: GCGTCTGGATCTTCGGGACAATGGGCTCTGTGGTGC...TTGTGTTACAGGCAGTTGAAACCCACTTTGTAGATGCTGAGAACTGAATTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS-3UTR CAA 90 bp CATGAAGATCTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATGAGGTGCTGGGCTGCTaGTTCCTCCAGCCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: HEDLDDKNVMDLVFSVVHEVLGC*FLQPVP
Trigger: GGGAACAGGCTGGAGGAACAAGCAGCCCAGCACCTC...ATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAGATCTTCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp GTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTCTAGTTCTTCTAAAACATaGTTGACCCTGAGGGCATCA +
Preference number: 5 (lower is better)
Translates to: VVSPMLSGVSALLGDQLSSSSKT*LTLRAS
Trigger: TGATGCCCTCAGGGTCAACAATGTTTTAGAAGAACT...AGAGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp GTTCCTCCTATAAGCCTGTGTGTCAGCACTCCTGGGAGACCAGTTCTCTCCCGGCTGCGAATAGGATTCTaGGAAATAATAAGAATCCGC +
Preference number: 5 (lower is better)
Translates to: VPPISLCVSTPGRPVLSRLRIGF*EIIRIR
Trigger: GCGGATTCTTATTATTTCCAAGAATCCTATTCGCAG...CCGGGAGAGAACTGGTCTCCCAGGAGTGCTGACACACAGGCTTATAGGAGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp CTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATGGGCAGCTTACTGGCACAACACTATaGGCCCGGCAAGACTTCAGA +
Preference number: 5 (lower is better)
Translates to: LDDKNVMDLVFSVVHGQLTGTTL*ARQDFR
Trigger: TCTGAAGTCTTGCCGGGCCAATAGTGTTGTGCCAGT...AAGCTGCCCATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS TCA 90 bp AGGGCATCACCAATCGCACTGGCACCAGAGTCTCCAAAGCCATTATaGGAGATGTCTAGGACTTTCAAGAATATATTTGCCTCCAGGCCT +
Preference number: 5 (lower is better)
Translates to: RASPIALAPESPKPL*EMSRTFKNIFASRP
Trigger: AGGCCTGGAGGCAAATATATTCTTGAAAGTCCTAGACATCTCTCATAATGGCTTTGGAGACTCTGGTGCCAGTGCGATTGGTGATGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CCA 90 bp AGAGTCACTTGGTGCAGATGCTGGCTGGGATGGTGTAGAGGCTTGTaGCCAGTCTTTTCTTCTAGAAGTATAACGCTTTATACAGAGTCC +
Preference number: 5 (lower is better)
Translates to: RVTWCRCWLGWCRGL*PVFSSRSITLYTES
Trigger: GGACTCTGTATAAAGCGTTATACTTCTAGAAGAAAAGACTGGCCACAAGCCTCTACACCATCCCAGCCAGCATCTGCACCAAGTGACTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp TGGTGGTTTCACCTATGCTCTCAGGTGTGTCAGCACTCCTGGGAGACCAGCTCTACATTCTCTGCTTACTaGGATATCAATAAGAATCCG +
Preference number: 5 (lower is better)
Translates to: WWFHLCSQVCQHSWETSSTFSAY*DINKNP
Trigger: CGGATTCTTATTGATATCCAAGTAAGCAGAGAATGT...AGAGCTGGTCTCCCAGGAGTGCTGACACACCTGAGAGCATAGGTGAAACCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023442.13
CDS-3UTR CAA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGCTCCAGCCTGTTCCCTaGCAGCTGCATCTTCTCAAC +
Preference number: 5 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLLQPVP*QLHLLN
Trigger: GTTGAGAAGATGCAGCTGCAAGGGAACAGGCTGGAG...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp ACACTGGCTTCTCTTCCAGAGAACCTGAATTCAGTTCTCAGCATCTACAAAGTGCGCAGCTTCTCCCTCTaGATCTTCATTCTTCTGAAC +
Preference number: 5 (lower is better)
Translates to: TLASLPENLNSVLSIYKVRSFSL*IFILLN
Trigger: GTTCAGAAGAATGAAGATCAAGAGGGAGAAGCTGCG...CACTTTGTAGATGCTGAGAACTGAATTCAGGTTCTCTGGAAGAGAAGCCAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS CCA 90 bp TGGCCAGTCTTTTCTTCTAGAAGTATAACGCTTTATACAGAGTCCTaGAAGAATTTCACTCATGGAGCTAGCGAGGTCCTCACATTCTCT +
Preference number: 5 (lower is better)
Translates to: WPVFSSRSITLYTES*KNFTHGASEVLTFS
Trigger: AGAGAATGTGAGGACCTCGCTAGCTCCATGAGTGAAATTCTTCCAGGACTCTGTATAAAGCGTTATACTTCTAGAAGAAAAGACTGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp CATGAAGATCTGGATGACAAGAATGTCATGGACCTTGTGTTCAGTGTTGTTCATCGCAGCTTCTCCCTCTaGATCTTCATTCTTCTGAAC +
Preference number: 5 (lower is better)
Translates to: HEDLDDKNVMDLVFSVVHRSFSL*IFILLN
Trigger: GTTCAGAAGAATGAAGATCAAGAGGGAGAAGCTGCG...ATGAACAACACTGAACACAAGGTCCATGACATTCTTGTCATCCAGATCTTCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp AAAATCTGGTTATCTGTAGTGTTAGCTGGTTTTGCTGTCTCTGACTGTGACTTGCGCAGCTTCTCCCTCTaGATCTTCATTCTTCTGAAC +
Preference number: 5 (lower is better)
Translates to: KIWLSVVLAGFAVSDCDLRSFSL*IFILLN
Trigger: GTTCAGAAGAATGAAGATCAAGAGGGAGAAGCTGCG...CAAGTCACAGTCAGAGACAGCAAAACCAGCTAACACTACAGATAACCAGATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS-3UTR CAA 90 bp ACACTGGCTTCTCTTCCAGAGAACCTGAATTCAGTTCTCAGCATCTACAAAGTGAGTTCTTCTAAAACATaGTTGACCCTGAGGGCATCA +
Preference number: 5 (lower is better)
Translates to: TLASLPENLNSVLSIYKVSSSKT*LTLRAS
Trigger: TGATGCCCTCAGGGTCAACAATGTTTTAGAAGAACT...CACTTTGTAGATGCTGAGAACTGAATTCAGGTTCTCTGGAAGAGAAGCCAGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232637.2
CDS TCA 72 bp CCTCGGGCAAACGCGGTGGCTCCCAGACCTCGCAGGTaGTTCCAACTGAGGTTAAGCTCTGTGAGTCCTGTG +
Preference number: 6 (lower is better)
Translates to: PRANAVAPRPRR*FQLRLSSVSPV
Trigger: CACAGGACTCACAGAGCTTAACCTCAGTTGGAATCACCTGCGAGGTCTGGGAGCCACCGCGTTTGCCCGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS GCA 72 bp AATGCTGTTCTTACGCAGGACATCAGCCAGAGCCTCTaGTCCAGCACCACAGAGCCCATTGTCCCGAAGATC +
Preference number: 6 (lower is better)
Translates to: NAVLTQDISQSL*SSTTEPIVPKI
Trigger: GATCTTCGGGACAATGGGCTCTGTGGTGCTGGAGCAGAGGCTCTGGCTGATGTCCTGCGTAAGAACAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS GCA 72 bp GCATCTTCTCAACAGTTGGGTTTAAGGCAAGGGCAGTaGAGATCGCCTGGAGCCCTGCAGCTCCAATCTGAT +
Preference number: 6 (lower is better)
Translates to: ASSQQLGLRQGQ*RSPGALQLQSD
Trigger: ATCAGATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGCCCTTGCCTTAAACCCAACTGTTGAGAAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS GCA 72 bp CCAACTGAGGTTAAGCTCTGTGAGTCCTGTGTTTTCTaGCACAGCAGGTCCAAGTATCTCTCCTGCCAGGTC +
Preference number: 6 (lower is better)
Translates to: PTEVKLCESCVF*HSRSKYLSCQV
Trigger: GACCTGGCAGGAGAGATACTTGGACCTGCTGTGGCAGAAAACACAGGACTCACAGAGCTTAACCTCAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CCA 72 bp CCACGGTGCCGAAGGTTCAATTCAGAGGCACCCTCTTaGCGCAGAAGACAAGAAACTGGCACAACACTATTG +
Preference number: 6 (lower is better)
Translates to: PRCRRFNSEAPS*RRRQETGTTLL
Trigger: CAATAGTGTTGTGCCAGTTTCTTGTCTTCTGCGCCAAGAGGGTGCCTCTGAATTGAACCTTCGGCACCGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CCA 72 bp GAGACCAGAGTCACTTGGTGCAGATGCTGGCTGGGATaGTGTAGAGGCTTGTGGCCAGTCTTTTCTTCTAGA +
Preference number: 6 (lower is better)
Translates to: ETRVTWCRCWLG*CRGLWPVFSSR
Trigger: TCTAGAAGAAAAGACTGGCCACAAGCCTCTACACCATCCCAGCCAGCATCTGCACCAAGTGACTCTGGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS CAA 72 bp GCCACGGTGCCGAAGGTTCAATTCAGAGGCACCCTCTaGGCGCAGAAGACAAGAAACTGGCACAACACTATT +
Preference number: 6 (lower is better)
Translates to: ATVPKVQFRGTL*AQKTRNWHNTI
Trigger: AATAGTGTTGTGCCAGTTTCTTGTCTTCTGCGCCAAGAGGGTGCCTCTGAATTGAACCTTCGGCACCGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CAA 90 bp CTCCAAAGCCATTATGAGAGATGTCTAGGACTTTCAAGAATATATTaGCCTCCAGGCCTCGGGCAAACGCGGTGGCTCCCAGACCTCGCA +
Preference number: 6 (lower is better)
Translates to: LQSHYERCLGLSRIY*PPGLGQTRWLPDLA
Trigger: TGCGAGGTCTGGGAGCCACCGCGTTTGCCCGAGGCCTGGAGGCAAATATATTCTTGAAAGTCCTAGACATCTCTCATAATGGCTTTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CAA 72 bp TCAGACACATCCAGCAGTTCTAGGGCAGATGATTTGTaGTTCCGGACAGACTTAAGGAGGCCAACACAGCCG +
Preference number: 6 (lower is better)
Translates to: SDTSSSSRADDL*FRTDLRRPTQP
Trigger: CGGCTGTGTTGGCCTCCTTAAGTCTGTCCGGAACAACAAATCATCTGCCCTAGAACTGCTGGATGTGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100123.10
CDS CAA 90 bp ACTTGGATATCAGACACATCCAGCAGTTCTAGGGCAGATGATTTGTaGTTCCGGACAGACTTAAGGAGGCCAACACAGCCGTCACTGCGA +
Preference number: 6 (lower is better)
Translates to: TWISDTSSSSRADDL*FRTDLRRPTQPSLR
Trigger: TCGCAGTGACGGCTGTGTTGGCCTCCTTAAGTCTGTCCGGAACAACAAATCATCTGCCCTAGAACTGCTGGATGTGTCTGATATCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100123.10
CDS CAA 72 bp CATTATGAGAGATGTCTAGGACTTTCAAGAATATATTaGCCTCCAGGCCTCGGGCAAACGCGGTGGCTCCCA +
Preference number: 6 (lower is better)
Translates to: HYERCLGLSRIY*PPGLGQTRWLP
Trigger: TGGGAGCCACCGCGTTTGCCCGAGGCCTGGAGGCAAATATATTCTTGAAAGTCCTAGACATCTCTCATAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CAA 90 bp GACACGGAGATTCGGTTGTTCCTCATATTCAGTTCTTCTAAAACATaGTTGACCCTGAGGGCATCACCAATCGCACTGGCACCAGAGTCT +
Preference number: 6 (lower is better)
Translates to: DTEIRLFLIFSSSKT*LTLRASPIALAPES
Trigger: AGACTCTGGTGCCAGTGCGATTGGTGATGCCCTCAGGGTCAACAATGTTTTAGAAGAACTGAATATGAGGAACAACCGAATCTCCGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CAA 90 bp TGCAGACCCAATCCCAACTTCAGGGCTCCTGACACGGAGATTCGGTaGTTCCTCATATTCAGTTCTTCTAAAACATTGTTGACCCTGAGG +
Preference number: 6 (lower is better)
Translates to: CRPNPNFRAPDTEIR*FLIFSSSKTLLTLR
Trigger: CCTCAGGGTCAACAATGTTTTAGAAGAACTGAATATGAGGAACAACCGAATCTCCGTGTCAGGAGCCCTGAAGTTGGGATTGGGTCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS CAA 90 bp ACCAGAGTCACTTGGTGCAGATGCTGGCTGGGATGGTGTAGAGGCTaGTGGCCAGTCTTTTCTTCTAGAAGTATAACGCTTTATACAGAG +
Preference number: 6 (lower is better)
Translates to: TRVTWCRCWLGWCRG*WPVFSSRSITLYTE
Trigger: CTCTGTATAAAGCGTTATACTTCTAGAAGAAAAGACTGGCCACAAGCCTCTACACCATCCCAGCCAGCATCTGCACCAAGTGACTCTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS CCA 72 bp TGGTGCAGATGCTGGCTGGGATGGTGTAGAGGCTTGTaGCCAGTCTTTTCTTCTAGAAGTATAACGCTTTAT +
Preference number: 6 (lower is better)
Translates to: WCRCWLGWCRGL*PVFSSRSITLY
Trigger: ATAAAGCGTTATACTTCTAGAAGAAAAGACTGGCCACAAGCCTCTACACCATCCCAGCCAGCATCTGCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
CDS CAA 72 bp CGGTTGTTCCTCATATTCAGTTCTTCTAAAACATTGTaGACCCTGAGGGCATCACCAATCGCACTGGCACCA +
Preference number: 6 (lower is better)
Translates to: RLFLIFSSSKTL*TLRASPIALAP
Trigger: TGGTGCCAGTGCGATTGGTGATGCCCTCAGGGTCAACAATGTTTTAGAAGAACTGAATATGAGGAACAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS TCA 72 bp CCAATCGCACTGGCACCAGAGTCTCCAAAGCCATTATaGGAGATGTCTAGGACTTTCAAGAATATATTTGCC +
Preference number: 6 (lower is better)
Translates to: PIALAPESPKPL*EMSRTFKNIFA
Trigger: GGCAAATATATTCTTGAAAGTCCTAGACATCTCTCATAATGGCTTTGGAGACTCTGGTGCCAGTGCGATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10
ENSMUST00000232637.2
CDS TCA 72 bp ATAGGATTCTTGGAAATAATAAGAATCCGCAGCGTCTaGTTGACTTGCAGACCCAATCCCAACTTCAGGGCT +
Preference number: 6 (lower is better)
Translates to: IGFLEIIRIRSV*LTCRPNPNFRA
Trigger: AGCCCTGAAGTTGGGATTGGGTCTGCAAGTCAATCAGACGCTGCGGATTCTTATTATTTCCAAGAATCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100123.10
CDS CCA 72 bp TTTTCTTCTAGAAGTATAACGCTTTATACAGAGTCCTaGAAGAATTTCACTCATGGAGCTAGCGAGGTCCTC +
Preference number: 6 (lower is better)
Translates to: FSSRSITLYTES*KNFTHGASEVL
Trigger: GAGGACCTCGCTAGCTCCATGAGTGAAATTCTTCCAGGACTCTGTATAAAGCGTTATACTTCTAGAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023442.13
ENSMUST00000100123.10