RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRRC7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028176

Ensembl transcript IDs: ENSMUST00000106044.6, ENSMUST00000199890.5, ENSMUST00000200137.5, ENSMUST00000200196.5, ENSMUST00000238317.3

Found 759 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTaGCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAAAT +
Preference number: 1 (lower is better)
Translates to: GWKANIHYYTPGTDV*HWSSNWQNLFLCIN
Trigger: ATTTATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
3UTR-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCCTGGCACTGATGTTTaGCATTGGTCCAGCAACTGG +
Preference number: 2 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQPGTDV*HWSSNW
Trigger: CCAGTTGCTGGACCAATGGCAAACATCAGTGCCAGG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
3UTR-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTTATACACCTGGCACTaGTGTTTGCCATTGGTCCAG +
Preference number: 2 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELLYTWH*CLPLVQ
Trigger: CTGGACCAATGGCAAACATCAGTGCCAGGTGTATAA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
3UTR-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACCTGGCACTGATGTTTaGCATTGGTCCAGCAACTGG +
Preference number: 2 (lower is better)
Translates to: KELVCASVLRNYRKSTLRPGTDV*HWSSNW
Trigger: CCAGTTGCTGGACCAATGGCAAACATCAGTGCCAGG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
3UTR-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATTATACACCTGGCACTaGTGTTTGCCATTGGTCCAG +
Preference number: 2 (lower is better)
Translates to: TGATVYSQHNPRKQNIKALYTWH*CLPLVQ
Trigger: CTGGACCAATGGCAAACATCAGTGCCAGGTGTATAA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
3UTR-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAAAACTGTGTCCATTTaGCTGAAGGATTTTATCCCC +
Preference number: 2 (lower is better)
Translates to: KELVCASVLRNYRKSTLRKTVSI*LKDFIP
Trigger: GGGGATAAAATCCTTCAGGCAAATGGACACAGTTTT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
3UTR-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACATTGGTCCAGCAACTaGCAAAATTTGTTTCTATGT +
Preference number: 2 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAHWSSN*QNLFLC
Trigger: ACATAGAAACAAATTTTGCCAGTTGCTGGACCAATG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
3UTR-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACATTTCACTCTACTATaGGAATTTAGCAAATGGCTA +
Preference number: 2 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAHFTLL*EFSKWL
Trigger: TAGCCATTTGCTAAATTCCCATAGTAGAGTGAAATG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
3UTR TCA 72 bp CTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTaGTACAGAACTGCGCGCAAACGCCATGTTTATAAG +
Preference number: 3 (lower is better)
Translates to: LHQCTARGCRWN*YRTARKRHVYK
Trigger: CTTATAAACATGGCGTTTGCGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
3UTR CCA 72 bp GTGGTTTTGCTGAAGAGACTGACCCGCAGCCACCTGTaGTCTGTCTCTGAAGTCAGCTTGTGTCCTCTTAAT +
Preference number: 3 (lower is better)
Translates to: VVLLKRLTRSHL*SVSEVSLCPLN
Trigger: ATTAAGAGGACACAAGCTGACTTCAGAGACAGACCACAGGTGGCTGCGGGTCAGTCTCTTCAGCAAAACCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
3UTR-3UTR CAA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCACAAAACTGTGTCCATTaGCCTGAAGGATTTTATCCC +
Preference number: 3 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPQNCVH*PEGFYP
Trigger: GGGATAAAATCCTTCAGGCAAATGGACACAGTTTTG...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
3UTR GCA 72 bp GCTAACATACACTATTATACACCTGGCACTGATGTTTaGCATTGGTCCAGCAACTGGCAAAATTTGTTTCTA +
Preference number: 3 (lower is better)
Translates to: ANIHYYTPGTDV*HWSSNWQNLFL
Trigger: TAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCCAGGGGGCAGCTCGTaGGGCTCACTGACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAPGGSS*GSLTLL
Trigger: CAGAAGGGTCAGTGAGCCCCACGAGCTGCCCCCTGG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAGCTGGGGGTCACTCTaGGGGACGGGCATATCTTGG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASWGSL*GTGISW
Trigger: CCAAGATATGCCCGTCCCCCAGAGTGACCCCCAGCT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGACATGGCCATCTCGGTaGAGCTGGCCAGGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCATWPSR*SWPGSQ
Trigger: CTGACTCCCTGGCCAGCTCCACCGAGATGGCCATGT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGCAGGTAACCAATGGTaGGAGGGAGGGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAAGNQW*EGGTPA
Trigger: AGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGACAGCCTGGCAGGTTaGAGAGTAATCCCACGCTGG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCADSLAG*RVIPRW
Trigger: CCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGAGAGGGAAGAGTGGTaGACTGTGCTGCCACTGGCA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAEREEW*TVLPLA
Trigger: TGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTAGGGGTGGGGTCGTaGTATTCCCATGGCACTCCC +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCALGVGS*YSHGTP
Trigger: GGGAGTGCCATGGGAATACCACGACCCCACCCCTAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCATGGTAGGCCTAGCTaGAACTGGCCTGGTTTGGGA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAHGRPS*NWPGLG
Trigger: TCCCAAACCAGGCCAGTTTCAGCTAGGCCTACCATG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGGGTGGGCTTCTGTTTaGAGAGGGATAAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAGWASV*RGIRAL
Trigger: CAAGGCCCTTATCCCTCTGCAAACAGAAGCCCACCC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAGTGGTGGACTGTGCTaGCACTGGCAATGGAGCACA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASGGLC*HWQWST
Trigger: TGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCAGCCTCCCGTTGGCTaGGTAATGGCTTTGCATCTA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAQPPVG*VMALHL
Trigger: TAGATGCAAAGCCATTACTCAGCCAACGGGAGGCTG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGTTCTGGTCCAATTCTaGCAGGGATTGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAVLVQF*QGLEGG
Trigger: GCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAAC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGCTGCTGCTCCCGGCTaGGGTGCTGAAGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQAAAPG*GAEGSV
Trigger: CACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTCTGCTGATCACACCTaGCCCATGGTGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASADHT*PMVCSN
Trigger: ATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTAGAGAGGGAAGAGTaGTGGACTGTGCTGCCACTG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCALEREE*WTVLPL
Trigger: CAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCCAGGGGGCAGCTCGTaGGGCTCACTGACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQPGGSS*GSLTLL
Trigger: CAGAAGGGTCAGTGAGCCCCACGAGCTGCCCCCTGG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGACAGCGGCCTCCTCTaGGTAAGGTTTTTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCADSGLL*VRFLAG
Trigger: TCCTGCTAAAAACCTTACCCAGAGGAGGCCGCTGTC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCCGCTCCTTGTGGGTTaGAGCTTTGGTCAAACTGAT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAPLLVG*SFGQTD
Trigger: ATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCCCGGCTGCGGTGCTaGAGGCTCTGTGACCCCATC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSRLRC*RLCDPI
Trigger: GATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAAGCACCGTCCAGGCTaGGGTCCCCGGGTAGCCTGT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELKHRPG*GPRVAC
Trigger: ACAGGCTACCCGGGGACCTCAGCCTGGACGGTGCTT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGTCAGGTTAAGAAGCTaGGTGAAGCCATCGGGTAGT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAVRLRS*VKPSGS
Trigger: ACTACCCGATGGCTTCACGCAGCTTCTTAACCTGAC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGCTGCTGCTCCCGGCTaGGGTGCTGAAGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELAAAPG*GAEGSV
Trigger: CACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGAGTAATCCCACGCTaGCCCCTGTCCCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRVIPR*PLSQGA
Trigger: AGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCTAGCAGAACAAGTTTaGGTGGGTACAGAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCALAEQV*VGTEGS
Trigger: AGACCCCTCTGTACCCACCCAAACTTGTTCTGCTAG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGATGGACTGGGAGTTCTaGTCCAATTCTGCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAMDWEF*SNSARD
Trigger: ATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCAT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGATGAGGGGATCTGGATaGGCAATGGCGATTGGAACT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAMRGSG*AMAIGT
Trigger: AGTTCCAATCGCCATTGCCCATCCAGATCCCCTCAT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGCACCAGGCGGCCAATaGGCTTCCGTTTGGTGGTCA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQAPGGQ*ASVWWS
Trigger: TGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCTTCAGGCAGCTCGCTaGATTCATTATTGCCTAGGT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCALQAAR*IHYCLG
Trigger: ACCTAGGCAATAATGAATTCAGCGAGCTGCCTGAAG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGTTAGCTGTTGGATTTaGGTTCTCAACACGCACTCC +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAVSCWI*VLNTHS
Trigger: GGAGTGCGTGTTGAGAACTCAAATCCAACAGCTAAC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGACCCCATCAGGGTCTaGATGTGGCTGCCTGCCCTG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELDPIRV*MWLPAL
Trigger: CAGGGCAGGCAGCCACATTCAGACCCTGATGGGGTC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000199890.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGCTGCTGCTCCCGGCTaGGGTGCTGAAGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWAAAPG*GAEGSV
Trigger: CACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTTCCCTTCATATGGCTaGTGCTCCCGGCTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQFPSYG*CSRLRC
Trigger: GCACCGCAGCCGGGAGCAGCAGCCATATGAAGGGAA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTCTAAAATGTTGCTTTaGTGGGACGGGGTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASKMLL*WDGVLS
Trigger: AGACAGGACCCCGTCCCAGCAAAGCAACATTTTAGA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200137.5
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGACATGGCCATCTCGGTaGAGCTGGCCAGGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQTWPSR*SWPGSQ
Trigger: CTGACTCCCTGGCCAGCTCCACCGAGATGGCCATGT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCAGGGGGCAGCTCGTaGGGCTCACTGACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPGGSS*GSLTLL
Trigger: CAGAAGGGTCAGTGAGCCCCACGAGCTGCCCCCTGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTTCAGCAATCCTATTaGGTCAGGCAGCTGTTGCAA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAFQQSY*VRQLLQ
Trigger: TTGCAACAGCTGCCTGACTCAATAGGATTGCTGAAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTCAGCTAATGAAGGGTaGAGTTCCCCAATCCTCATT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASANEG*SSPILI
Trigger: AATGAGGATTGGGGAACTTCACCCTTCATTAGCTGA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCCCTGGCTGGCGAACTaGGCATTCACCATGGCATCC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELPWLAN*AFTMAS
Trigger: GGATGCCATGGTGAATGCTCAGTTCGCCAGCCAGGG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAAGACACGCAGTCTCTaGATCTGCCCAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAKTRSL*ICPISS
Trigger: TGAAGAAATTGGGCAGATGCAGAGACTGCGTGTCTT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTTCCCTTCATATGGCTaGTGCTCCCGGCTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELFPSYG*CSRLRC
Trigger: GCACCGCAGCCGGGAGCAGCAGCCATATGAAGGGAA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGCTCCTCAATCTGATTaGCATCCAGATAGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAAPQSD*HPDRAL
Trigger: AAGAGCTCTATCTGGATGCCAATCAGATTGAGGAGC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGCAGGTAACCAATGGTaGGAGGGAGGGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQAGNQW*EGGTPA
Trigger: AGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGAGTAATCCCACGCTaGCCCCTGTCCCAGGGGGCT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWRVIPR*PLSQGA
Trigger: AGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGACAGCCTGGCAGGTTaGAGAGTAATCCCACGCTGG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQDSLAG*RVIPRW
Trigger: CCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCCCCACAAAGAGTTATaGACGGCATCTTTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAPHKEL*TASLAV
Trigger: AACAGCTAAAGATGCCGTCCATAACTCTTTGTGGGG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGTAGGCTCCTTCATGTaGTCTTTTCTTTCAGGCAAG +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAVGSFM*SFLSGK
Trigger: CTTGCCTGAAAGAAAAGACCACATGAAGGAGCCTAC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGATGTTCCCTTCATATaGCTGCTGCTCCCGGCTGCG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQDVPFI*LLLPAA
Trigger: CGCAGCCGGGAGCAGCAGCCATATGAAGGGAACATC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGTGTGCGTTCGAAGTTaGAGACCTCCTTGGGCACCT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQVCVRS*RPPWAP
Trigger: AGGTGCCCAAGGAGGTCTTCAACTTCGAACGCACAC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTGTAGGCTCTGGGGCTaGCCAGATCCTTGGCGATGT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELCRLWG*PDPWRC
Trigger: ACATCGCCAAGGATCTGGTCAGCCCCAGAGCCTACA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCCCGGCTGCGGTGCTaGAGGCTCTGTGACCCCATC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSRLRC*RLCDPI
Trigger: GATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATCCCGGCTGCGGTGCTaGAGGCTCTGTGACCCCATC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKASRLRC*RLCDPI
Trigger: GATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGAATGGTCACTTTGTTaGTGTTCCCTTCATATGGCT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAEWSLC*CSLHMA
Trigger: AGCCATATGAAGGGAACATCAACAAAGTGACCATTC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAAGCACCGTCCAGGCTaGGGTCCCCGGGTAGCCTGT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRKHRPG*GPRVAC
Trigger: ACAGGCTACCCGGGGACCTCAGCCTGGACGGTGCTT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGGGTGGGCTTCTGTTTaGAGAGGGATAAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQGWASV*RGIRAL
Trigger: CAAGGCCCTTATCCCTCTGCAAACAGAAGCCCACCC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGATACTCAGAATTGTGTaGAAAAGGGGGTGGAATCCT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAILRIV*KRGWNP
Trigger: AGGATTCCACCCCCTTTTGCACACAATTCTGAGTAT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGTCTGCCGGCATTTTaGCACAGCTCTCCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSLPAF*HSSPLP
Trigger: AGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGCTTCCAATTTCTCTTaGCAACTCTGGGAGGAAATT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAASNFS*QLWEEI
Trigger: AATTTCCTCCCAGAGTTGCCAAGAGAAATTGGAAGC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCACTGTAATCTCCTTTaGGGCCACCGGCCACTTGTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQHCNLL*GHRPLV
Trigger: CACAAGTGGCCGGTGGCCCCAAAGGAGATTACAGTG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGGGACAGCCTCCCGTTaGCTGAGTAATGGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQGTASR*LSNGFA
Trigger: TGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGTGTGTGTCTGTGTGTaGACTGCTCCAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQVCVCV*TAPVPG
Trigger: CCCTGGAACTGGAGCAGTCCACACACAGACACACAC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACCAGGGGGCAGCTCGTaGGGCTCACTGACCCTTCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRPGGSS*GSLTLL
Trigger: CAGAAGGGTCAGTGAGCCCCACGAGCTGCCCCCTGG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATCCCGCCTCCCAAGTaGGTAAGGATTCCATTGGCC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQIPPPK*VRIPLA
Trigger: GGCCAATGGAATCCTTACCCACTTGGGAGGCGGGAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCGGGCTGTAGTAGGTTaGATGCTGGTCCATCAGGCT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRAVVG*MLVHQA
Trigger: AGCCTGATGGACCAGCATCCAACCTACTACAGCCCG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAGTTTCCGTAGAGCTTaGCAGTTGAACAATTGCTTA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASFRRA*QLNNCL
Trigger: TAAGCAATTGTTCAACTGTCAAGCTCTACGGAAACT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCCTGGCTGGCGAACTaGGCATTCACCATGGCATCC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPWLAN*AFTMAS
Trigger: GGATGCCATGGTGAATGCTCAGTTCGCCAGCCAGGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTTCACTTCTTGATATaGAGGGTGCTCATCTTCGTA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAFHFLI*RVLIFV
Trigger: TACGAAGATGAGCACCCTTCATATCAAGAAGTGAAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGCCTGCATGCATTGCTaGAATACCTCCATAGGGCAG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQACMHC*NTSIGQ
Trigger: CTGCCCTATGGAGGTATTTCAGCAATGCATGCAGGC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATCCCGGCTGCGGTGCTaGAGGCTCTGTGACCCCATC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISRLRC*RLCDPI
Trigger: GATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAAAGCACCGTCCAGGCTaGGGTCCCCGGGTAGCCTGT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIKHRPG*GPRVAC
Trigger: ACAGGCTACCCGGGGACCTCAGCCTGGACGGTGCTT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCTCTGCCCTTTCGTTTaGATTAAGCACCGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQLCPFV*IKHRPG
Trigger: GCCTGGACGGTGCTTAATTCAAACGAAAGGGCAGAG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCTGTGTCCATTTGCCTaGAGGATTTTATCCCCGGGC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQLCPFA*RILSPG
Trigger: GCCCGGGGATAAAATCCTTCAGGCAAATGGACACAG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGACCCCATCAGGGTCTaGATGTGGCTGCCTGCCCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRDPIRV*MWLPAL
Trigger: CAGGGCAGGCAGCCACATTCAGACCCTGATGGGGTC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199890.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGTGGTGGACTGTGCTaGCACTGGCAATGGAGCACA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSGGLC*HWQWST
Trigger: TGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTTTCTTTCACAGTTTaGTCCGTGTTAGCTGTTGGA +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAFSFTV*SVLAVG
Trigger: TCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTGTCTGTGTGTGGACTaGTCCAGTTCCAGGGGAACA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQCLCVD*SSSRGT
Trigger: TGTTCCCCTGGAACTGGAGCAGTCCACACACAGACA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCAGTCATTGAAATGCTaGTCTGGCCTTCCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQQSLKC*SGLPAH
Trigger: GTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCCCCATAACTCTCTGTaGTGTAGCTCCTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQPHNSL*CSSWQT
Trigger: TGTCTGCCAGGAGCTACAGCACAGAGAGTTATGGGG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGCTGCTGCTCCCGGCTaGGGTGCTGAAGGCTCTGTG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIAAAPG*GAEGSV
Trigger: CACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATCACACCTGGCCCATaGTGTGCAGCAATCGCCAGA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELITPGP*CAAIAR
Trigger: TCTGGCGATTGCTGCACACCATGGGCCAGGTGTGAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGCTGGGGGTCACTCTaGGGGACGGGCATATCTTGG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSWGSL*GTGISW
Trigger: CCAAGATATGCCCGTCCCCCAGAGTGACCCCCAGCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATGCTCCTCTCCTGCTaGAGGCCACTTATACAACCC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQMLLSC*RPLIQP
Trigger: GGGTTGTATAAGTGGCCTCCAGCAGGAGAGGAGCAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGAGAGGGAAGAGTGGTaGACTGTGCTGCCACTGGCA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWEREEW*TVLPLA
Trigger: TGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCAGAACAAGTTTGGGTaGGTACAGAGGGGTCTCAGC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQQNKFG*VQRGLS
Trigger: GCTGAGACCCCTCTGTACCCACCCAAACTTGTTCTG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGGCTGTGGGAAAGGTaGTGCAATCCTGTTACCCCA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRLWER*CNPVTP
Trigger: TGGGGTAACAGGATTGCACCACCTTTCCCACAGCCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGGGACAGCCTCCCGTTaGCTGAGTAATGGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELGTASR*LSNGFA
Trigger: TGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCGGAGAAAAGGGACCTaGTGTCTCTGTAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRRKGT*CLCRLL
Trigger: AAGGAGCCTACAGAGACACCAGGTCCCTTTTCTCCG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGGCTCCTGGACATACTaGACATGCCATGCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELGSWTY*TCHALV
Trigger: GACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTCTCGTCATCCAACATaGGTACTGACTGGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSRHPT*VLTGSW
Trigger: CCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTCATTTACAGATGGCTaGGAAAAGGAGAACATCTGT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASFTDG*EKENIC
Trigger: ACAGATGTTCTCCTTTTCCCAGCCATCTGTAAATGA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGATGTTCCCTTCATATaGCTGCTGCTCCCGGCTGCG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWDVPFI*LLLPAA
Trigger: CGCAGCCGGGAGCAGCAGCCATATGAAGGGAACATC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCGGGCTGTAGTAGGTTaGATGCTGGTCCATCAGGCT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRAVVG*MLVHQA
Trigger: AGCCTGATGGACCAGCATCCAACCTACTACAGCCCG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGCACCAGGCGGCCAATaGGCTTCCGTTTGGTGGTCA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVAPGGQ*ASVWWS
Trigger: TGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGATTTCATTAGCTGGATaGACAAAAGAATCCTCCACT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAISLAG*TKESST
Trigger: AGTGGAGGATTCTTTTGTTCATCCAGCTAATGAAAT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATCCAACATGGGTACTaGCTGGCTCCTGGACATACT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQIQHGY*LAPGHT
Trigger: AGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGACCTGCCATTCCTCTTaGGGAATTGGGGATCAGTCA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQTCHSS*GIGDQS
Trigger: TGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCATGGTAGGCCTAGCTaGAACTGGCCTGGTTTGGGA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWHGRPS*NWPGLG
Trigger: TCCCAAACCAGGCCAGTTTCAGCTAGGCCTACCATG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGTGCTGAAGGCTCTGTaGCCCCATCAGGGTCTGAAT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWVLKAL*PHQGLN
Trigger: ATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCAC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGGGACTCCAGCTCGTTaGAGCTGCAGTCAAATTCTT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQGTPAR*SCSQIL
Trigger: AAGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGACTTATACAACCCCATaGCAGCTGGGGGTCACTCTG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELTYTTP*QLGVTL
Trigger: CAGAGTGACCCCCAGCTGGCATGGGGTTGTATAAGT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCACATGCTCCTCTCCTaGTGGAGGCCACTTATACAA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQHMLLS*WRPLIQ
Trigger: TTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGTTCTGGTCCAATTCTaGCAGGGATTGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELVLVQF*QGLEGG
Trigger: GCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAAC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCAGTCATTGAAATGCTaGTCTGGCCTTCCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELQSLKC*SGLPAH
Trigger: GTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELICLSS*CLQSAG
Trigger: GCCGGCAGACTGGAGACAGCAGCTGCTTAGACATAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGGCCTCTTCCGAAGTaGTGCACGAGCCTCCTTACA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWRPLPK*CTSLLT
Trigger: TGTAAGGAGGCTCGTGCAGCACTTCGGAAGAGGCCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCACTGGCTTCAATTATaGTTAAACACTTACAGCACT +
Preference number: 4 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAHWLQL*LNTYST
Trigger: AGTGCTGTAAGTGTTTAACCATAATTGAAGCCAGTG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGCAGGTAACCAATGGTaGGAGGGAGGGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPAGNQW*EGGTPA
Trigger: AGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTGCTTGGTTTCTGGGTaGGCTTCTGTTTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELCLVSG*ASVCRG
Trigger: CCCTCTGCAAACAGAAGCCCACCCAGAAACCAAGCA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGATCACACCTGGCCCATaGTGTGCAGCAATCGCCAGA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWITPGP*CAAIAR
Trigger: TCTGGCGATTGCTGCACACCATGGGCCAGGTGTGAT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCTGCTGATCACACCTaGCCCATGGTGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSADHT*PMVCSN
Trigger: ATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGCTGGGGGTCACTCTaGGGGACGGGCATATCTTGG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSWGSL*GTGISW
Trigger: CCAAGATATGCCCGTCCCCCAGAGTGACCCCCAGCT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGCTGGGGGTCACTCTaGGGGACGGGCATATCTTGG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSWGSL*GTGISW
Trigger: CCAAGATATGCCCGTCCCCCAGAGTGACCCCCAGCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTGCTGCCACTGGCAATaGAGCACACATGCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWCCHWQ*STHAPL
Trigger: GAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGAGAGGGAAGAGTGGTaGACTGTGCTGCCACTGGCA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPEREEW*TVLPLA
Trigger: TGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGACGCACTCCATGGCTTaGCTTACCCACCAGATTTTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQTHSMA*LTHQIL
Trigger: CAAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCAACACGCACTCCATaGCTTGGCTTACCCACCAGA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSTRTP*LGLPTR
Trigger: TCTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCACTGTAATCTCCTTTaGGGCCACCGGCCACTTGTG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWHCNLL*GHRPLV
Trigger: CACAAGTGGCCGGTGGCCCCAAAGGAGATTACAGTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCTAGCAGAACAAGTTTaGGTGGGTACAGAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQLAEQV*VGTEGS
Trigger: AGACCCCTCTGTACCCACCCAAACTTGTTCTGCTAG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGGCTGTGGGAAAGGTaGTGCAATCCTGTTACCCCA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRLWER*CNPVTP
Trigger: TGGGGTAACAGGATTGCACCACCTTTCCCACAGCCT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGAAAGCATCACTCATTaGCAGCCTATCAGGACGCTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQESITH*QPIRTL
Trigger: CAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCGGAGAAAAGGGACCTaGTGTCTCTGTAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRRKGT*CLCRLL
Trigger: AAGGAGCCTACAGAGACACCAGGTCCCTTTTCTCCG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCTCGTCATCCAACATaGGTACTGACTGGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSRHPT*VLTGSW
Trigger: CCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAACATGGCCATCTCGGTaGAGCTGGCCAGGGAGTCAG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVTWPSR*SWPGSQ
Trigger: CTGACTCCCTGGCCAGCTCCACCGAGATGGCCATGT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGATGTTCCCTTCATATaGCTGCTGCTCCCGGCTGCG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPDVPFI*LLLPAA
Trigger: CGCAGCCGGGAGCAGCAGCCATATGAAGGGAACATC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCGGGCTGTAGTAGGTTaGATGCTGGTCCATCAGGCT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWRAVVG*MLVHQA
Trigger: AGCCTGATGGACCAGCATCCAACCTACTACAGCCCG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGCACCAGGCGGCCAATaGGCTTCCGTTTGGTGGTCA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIAPGGQ*ASVWWS
Trigger: TGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGTGTGCGTTCGAAGTTaGAGACCTCCTTGGGCACCT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPVCVRS*RPPWAP
Trigger: AGGTGCCCAAGGAGGTCTTCAACTTCGAACGCACAC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGGAGGTTGGCAGACTTaGGAGGTCATTATCAGGAAT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQGGWQT*EVIIRN
Trigger: ATTCCTGATAATGACCTCTCAAGTCTGCCAACCTCC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATATCTTGGATCTGCTaGTCACACCTGGCCCATGGT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELISWIC*SHLAHG
Trigger: ACCATGGGCCAGGTGTGATCAGCAGATCCAAGATAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCAGCCTCCCGTTGGCTaGGTAATGGCTTTGCATCTA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWQPPVG*VMALHL
Trigger: TAGATGCAAAGCCATTACTCAGCCAACGGGAGGCTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGGGCGGCAGTGGATTTaGGAAAAGACATTACCGAGA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELGRQWI*EKTLPR
Trigger: TCTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCCGCTCCTTGTGGGTTaGAGCTTTGGTCAAACTGAT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELPLLVG*SFGQTD
Trigger: ATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATGTAGGCTCTGGGGCTaGCCAGATCCTTGGCGATGT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKACRLWG*PDPWRC
Trigger: ACATCGCCAAGGATCTGGTCAGCCCCAGAGCCTACA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACCCTGGCTGGCGAACTaGGCATTCACCATGGCATCC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIPWLAN*AFTMAS
Trigger: GGATGCCATGGTGAATGCTCAGTTCGCCAGCCAGGG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGACCTGCCATTCCTCTTaGGGAATTGGGGATCAGTCA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELTCHSS*GIGDQS
Trigger: TGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGACCCCATCAGGGTCTaGATGTGGCTGCCTGCCTTT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRDPIRV*MWLPAF
Trigger: AAAGGCAGGCAGCCACATTCAGACCCTGATGGGGTC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCTCTGCCCTTTCGTTTaGATTAAGCACCGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWLCPFV*IKHRPG
Trigger: GCCTGGACGGTGCTTAATTCAAACGAAAGGGCAGAG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGGGACTCCAGCTCGTTaGAGCTGCAGTCAAATTCTT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELGTPAR*SCSQIL
Trigger: AAGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAAGAGTGGTGGACTGTaGTGCCACTGGCAATGGAGC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPKSGGL*CHWQWS
Trigger: GCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCCGACAATCCTTTCTTaGCTAATTAAAGGCCTGCGC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQPTILS*LIKGLR
Trigger: GCGCAGGCCTTTAATTAGGCAAGAAAGGATTGTCGG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCAGTCATTGAAATGCTaGTCTGGCCTTCCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWQSLKC*SGLPAH
Trigger: GTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGATCAGTCATTGAAATaGTGCTCTGGCCTTCCAGCC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELDQSLK*CSGLPA
Trigger: GGCTGGAAGGCCAGAGCAGCATTTCAATGACTGATC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCCCATAACTCTCTGTaGTGTAGCTCCTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPHNSL*CSSWQT
Trigger: TGTCTGCCAGGAGCTACAGCACAGAGAGTTATGGGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGTCTGCCGGCATTTTaGCACAGCTCTCCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSLPAF*HSSPLP
Trigger: AGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACTGCTGTCTCCAGTCTaGCGGCATTTTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPLLSPV*RHFATA
Trigger: AGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWICLSS*CLQSAG
Trigger: GCCGGCAGACTGGAGACAGCAGCTGCTTAGACATAT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCTCTTCCGAAGTGCTaGACGAGCCTCCTTACAAGG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPLPKC*TSLLTR
Trigger: CCTTGTAAGGAGGCTCGTGCAGCACTTCGGAAGAGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGACAGCCTGGCAGGTTaGAGAGTAATCCCACGCTGG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRDSLAG*RVIPRW
Trigger: CCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGATGCTCCTCTCCTGCTaGAGGCCACTTATACAACCC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWMLLSC*RPLIQP
Trigger: GGGTTGTATAAGTGGCCTCCAGCAGGAGAGGAGCAT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATGCTGCCACTGGCAATaGAGCACACATGCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPCCHWQ*STHAPL
Trigger: GAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAGAGAGGGAAGAGTGGTaGACTGTGCTGCCACTGGCA +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPEREEW*TVLPLA
Trigger: TGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTC...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCAACACGCACTCCATaGCTTGGCTTACCCACCAGA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSTRTP*LGLPTR
Trigger: TCTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACACTGTAATCTCCTTTaGGGCCACCGGCCACTTGTG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPHCNLL*GHRPLV
Trigger: CACAAGTGGCCGGTGGCCCCAAAGGAGATTACAGTG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCAGAACAAGTTTGGGTaGGTACAGAGGGGTCTCAGC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWQNKFG*VQRGLS
Trigger: GCTGAGACCCCTCTGTACCCACCCAAACTTGTTCTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGGACAGCCTCCCGTTaGCTGAGTAATGGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGTASR*LSNGFA
Trigger: TGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGAAAGCATCACTCATTaGCAGCCTATCAGGACGCTG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELESITH*QPIRTL
Trigger: CAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATTAGGGGTGGGGTCGTaGTATTCCCATGGCACTCCC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKALGVGS*YSHGTP
Trigger: GGGAGTGCCATGGGAATACCACGACCCCACCCCTAA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGTACTGACTGGCTCCTaGACATACTGGACATGCCAT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELVLTGS*TYWTCH
Trigger: ATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTAC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCATCTGTTCCATGGGTaGGTATCCTCTGTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELHLFHG*VSSVGS
Trigger: AGAGCCTACAGAGGATACCCACCCATGGAACAGATG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGAACATCTGTTCCATaGGTGGGTATCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRTSVP*VGILCR
Trigger: CCTACAGAGGATACCCACCCATGGAACAGATGTTCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCTCCCTTCACAGGGGTaGGCCTTGTCTTTATATCAC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELLPSQG*ALSLYH
Trigger: GTGATATAAAGACAAGGCCCACCCCTGTGAAGGGAG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATGAGGGGATCTGGATaGGCAATGGCGATTGGAACT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELMRGSG*AMAIGT
Trigger: AGTTCCAATCGCCATTGCCCATCCAGATCCCCTCAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGTGTGCGTTCGAAGTTaGAGACCTCCTTGGGCACCT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVVCVRS*RPPWAP
Trigger: AGGTGCCCAAGGAGGTCTTCAACTTCGAACGCACAC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTTTCAGCAATCCTATTaGGTCAGGCAGCTGTTGCAA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQFQQSY*VRQLLQ
Trigger: TTGCAACAGCTGCCTGACTCAATAGGATTGCTGAAA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATAAGGGCCTTGGACTaGTTGTCAGAAAGCCACAAT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQIRALD*LSESHN
Trigger: ATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGATATCTTGGATCTGCTaGTCACACCTGGCCCATGGT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWISWIC*SHLAHG
Trigger: ACCATGGGCCAGGTGTGATCAGCAGATCCAAGATAT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGGGCGGCAGTGGATTTaGGAAAAGACATTACCGAGA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWGRQWI*EKTLPR
Trigger: TCTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGACCTGCCATTCCTCTTaGGGAATTGGGGATCAGTCA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWTCHSS*GIGDQS
Trigger: TGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACATGGTAGGCCTAGCTaGAACTGGCCTGGTTTGGGA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRHGRPS*NWPGLG
Trigger: TCCCAAACCAGGCCAGTTTCAGCTAGGCCTACCATG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGACCCCATCAGGGTCTaGATGTGGCTGCCTGCCTTT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIDPIRV*MWLPAF
Trigger: AAAGGCAGGCAGCCACATTCAGACCCTGATGGGGTC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGTGCTGAAGGCTCTGTaGCCCCATCAGGGTCTGAAT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRVLKAL*PHQGLN
Trigger: ATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCAC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCCTTGTCAGAAGGTTTaGAAGGATTTCCTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELPCQKV*KDFLAH
Trigger: GTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGGCAGCACTTGCAATaGATTGTTATCCATCCACAG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRQHLQ*IVIHPQ
Trigger: CTGTGGATGGATAACAATGCATTGCAAGTGCTGCCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGGGACTCCAGCTCGTTaGAGCTGCAGTCAAATTCTT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWGTPAR*SCSQIL
Trigger: AAGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAAGACACGCAGTCTCTaGATCTGCCCAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQKTRSL*ICPISS
Trigger: TGAAGAAATTGGGCAGATGCAGAGACTGCGTGTCTT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAGGGTGGGCTTCTGTTTaGAGAGGGATAAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAGWASV*RGIRAL
Trigger: CAAGGCCCTTATCCCTCTGCAAACAGAAGCCCACCC...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGTGGTGGACTGTGCTaGCACTGGCAATGGAGCACA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSGGLC*HWQWST
Trigger: TGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGTAGTCTGAGTAGGTaGCTGAGGAGACACTGTTAT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSSLSR*LRRHCY
Trigger: ATAACAGTGTCTCCTCAGGCACCTACTCAGACTACT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGTTCTGGTCCAATTCTaGCAGGGATTGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPVLVQF*QGLEGG
Trigger: GCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAAC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACTGGACATGCCATaGTCTGGTCCCAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELILDMP*SGPKNL
Trigger: CAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTGGACATACTGGACATaGCATGCTCTGGTCCCAAGA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWWTYWT*HALVPR
Trigger: TCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGTCTGCCGGCATTTTaGCACAGCTCTCCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSLPAF*HSSPLP
Trigger: AGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAGTCTGCCGGCATTTTaGCACAGCTCTCCTCTCCCT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKASLPAF*HSSPLP
Trigger: AGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACTGCTGTCTCCAGTCTaGCGGCATTTTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVLLSPV*RHFATA
Trigger: AGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATGCTTGGTTTCTGGGTaGGCTTCTGTTTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPCLVSG*ASVCRG
Trigger: CCCTCTGCAAACAGAAGCCCACCCAGAAACCAAGCA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATGCTGCCACTGGCAATaGAGCACACATGCTCCTCTC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRCCHWQ*STHAPL
Trigger: GAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGACGCACTCCATGGCTTaGCTTACCCACCAGATTTTG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWTHSMA*LTHQIL
Trigger: CAAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACACTGTAATCTCCTTTaGGGCCACCGGCCACTTGTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRHCNLL*GHRPLV
Trigger: CACAAGTGGCCGGTGGCCCCAAAGGAGATTACAGTG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGGCTGTGGGAAAGGTaGTGCAATCCTGTTACCCCA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPRLWER*CNPVTP
Trigger: TGGGGTAACAGGATTGCACCACCTTTCCCACAGCCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAGGGACAGCCTCCCGTTaGCTGAGTAATGGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPGTASR*LSNGFA
Trigger: TGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCC...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGTGTGTGTCTGTGTGTaGACTGCTCCAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVVCVCV*TAPVPG
Trigger: CCCTGGAACTGGAGCAGTCCACACACAGACACACAC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGGCACTTCTGTTTCTaGTGTGTGTCTGTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRHFCF*CVSVCG
Trigger: TCCACACACAGACACACACCAGAAACAGAAGTGCCT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGTAGGCTCCTTCATGTaGTCTTTTCTTTCAGGCAAG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQVGSFM*SFLSGK
Trigger: CTTGCCTGAAAGAAAAGACCACATGAAGGAGCCTAC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACGGAGAAAAGGGACCTaGTGTCTCTGTAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPRRKGT*CLCRLL
Trigger: AAGGAGCCTACAGAGACACCAGGTCCCTTTTCTCCG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATTAGGGGTGGGGTCGTaGTATTCCCATGGCACTCCC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCILGVGS*YSHGTP
Trigger: GGGAGTGCCATGGGAATACCACGACCCCACCCCTAA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAGGCTCCTGGACATACTaGACATGCCATGCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAGSWTY*TCHALV
Trigger: GACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCC...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGCTCCTGGACATACTaGACATGCCATGCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGSWTY*TCHALV
Trigger: GACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCGCTTTTTGTTGGGGTaGGCCTTTACTACTTCCATA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRFLLG*AFTTSI
Trigger: TATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTTCCACCGCTCCTTGTaGGTTGAAGCTTTGGTCAAA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELFHRSL*VEALVK
Trigger: TTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCATCTGTTCCATGGGTaGGTATCCTCTGTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWHLFHG*VSSVGS
Trigger: AGAGCCTACAGAGGATACCCACCCATGGAACAGATG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGACAGCGGCCTCCTCTaGGTAAGGTTTTTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPDSGLL*VRFLAG
Trigger: TCCTGCTAAAAACCTTACCCAGAGGAGGCCGCTGTC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCTCCCTTCACAGGGGTaGGCCTTGTCTTTATATCAC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWLPSQG*ALSLYH
Trigger: GTGATATAAAGACAAGGCCCACCCCTGTGAAGGGAG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAATCCCGCCTCCCAAGTaGGTAAGGATTCCATTGGCC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVIPPPK*VRIPLA
Trigger: GGCCAATGGAATCCTTACCCACTTGGGAGGCGGGAT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGATGTTCCCTTCATATaGCTGCTGCTCCCGGCTGCG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIDVPFI*LLLPAA
Trigger: CGCAGCCGGGAGCAGCAGCCATATGAAGGGAACATC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGGAGTAATCCAACACTaGGATGATCTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWGVIQH*DDLFLS
Trigger: GGAGAGGAAGAGATCATCTCAGTGTTGGATTACTCC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTGTGCGTTCGAAGTTaGAGACCTCCTTGGGCACCT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVCVRS*RPPWAP
Trigger: AGGTGCCCAAGGAGGTCTTCAACTTCGAACGCACAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGTACACCGTTTTTACTaGTGTCGAGTTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQVHRFY*CRVLSG
Trigger: ACCTGAAAGAACTCGACATCAGTAAAAACGGTGTAC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCTTCAGGCAGCTCGCTaGATTCATTATTGCCTAGGT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWLQAAR*IHYCLG
Trigger: ACCTAGGCAATAATGAATTCAGCGAGCTGCCTGAAG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGTTAGCTGTTGGATTTaGGTTCTCAACACGCACTCC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWVSCWI*VLNTHS
Trigger: GGAGTGCGTGTTGAGAACTCAAATCCAACAGCTAAC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGGCGGCAGTGGATTTaGGAAAAGACATTACCGAGA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGRQWI*EKTLPR
Trigger: TCTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCGCTCCTTGTGGGTTaGAGCTTTGGTCAAACTGAT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPLLVG*SFGQTD
Trigger: ATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTGCTGAAGGCTCTGTaGCCCCATCAGGGTCTGAAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVLKAL*PHQGLN
Trigger: ATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGCTGGTCCATCAGGCTaGACCCTAGTAACAAAGATA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWAGPSG*TLVTKI
Trigger: TATCTTTGTTACTAGGGTTCAGCCTGATGGACCAGC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACTGTGTCCATTTGCCTaGAGGATTTTATCCCCGGGC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKALCPFA*RILSPG
Trigger: GCCCGGGGATAAAATCCTTCAGGCAAATGGACACAG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGAGTCAGGCAGCTGTTaGAACATATTGGATGATAGT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQESGSC*NILDDS
Trigger: ACTATCATCCAATATGTTGCAACAGCTGCCTGACTC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGGACTCCAGCTCGTTaGAGCTGCAGTCAAATTCTT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGTPAR*SCSQIL
Trigger: AAGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGTCAGAAAGCCACAATaGTGCAAGCTCTTTGAGTTT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQVRKPQ*CKLFEF
Trigger: AAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGAC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGGGTGGGCTTCTGTTTaGAGAGGGATAAGGGCCTTG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIGWASV*RGIRAL
Trigger: CAAGGCCCTTATCCCTCTGCAAACAGAAGCCCACCC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACAAAGGCAACAGTCATaGGCTGTTGTCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPQRQQS*AVVSAP
Trigger: AGGAGCAGAGACAACAGCGCATGACTGTTGCCTTTG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAACTTATACAACCCCATaGCAGCTGGGGGTCACTCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRTYTTP*QLGVTL
Trigger: CAGAGTGACCCCCAGCTGGCATGGGGTTGTATAAGT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAACTTATACAACCCCATaGCAGCTGGGGGTCACTCTG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKATYTTP*QLGVTL
Trigger: CAGAGTGACCCCCAGCTGGCATGGGGTTGTATAAGT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAAGTGGTGGACTGTGCTaGCACTGGCAATGGAGCACA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISGGLC*HWQWST
Trigger: TGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAAAGAGTGGTGGACTGTaGTGCCACTGGCAATGGAGC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIKSGGL*CHWQWS
Trigger: GCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCGACAATCCTTTCTTaGCTAATTAAAGGCCTGCGC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPTILS*LIKGLR
Trigger: GCGCAGGCCTTTAATTAGGCAAGAAAGGATTGTCGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATGTCTGTGTGTGGACTaGTCCAGTTCCAGGGGAACA +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKACLCVD*SSSRGT
Trigger: TGTTCCCCTGGAACTGGAGCAGTCCACACACAGACA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATGTCTGTGTGTGGACTaGTCCAGTTCCAGGGGAACA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRCLCVD*SSSRGT
Trigger: TGTTCCCCTGGAACTGGAGCAGTCCACACACAGACA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATGGACATACTGGACATaGCATGCTCTGGTCCCAAGA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPWTYWT*HALVPR
Trigger: TCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACCCCATAACTCTCTGTaGTGTAGCTCCTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRPHNSL*CSSWQT
Trigger: TGTCTGCCAGGAGCTACAGCACAGAGAGTTATGGGG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRICLSS*CLQSAG
Trigger: GCCGGCAGACTGGAGACAGCAGCTGCTTAGACATAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAATTCCCTTCATATGGCTaGTGCTCCCGGCTGCGGTGC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKFPSYG*CSRLRC
Trigger: GCACCGCAGCCGGGAGCAGCAGCCATATGAAGGGAA...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTTCTCTTGGCAACTCTaGGAGGAAATTCTCGTCAAC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELFSWQL*EEILVN
Trigger: GTTGACGAGAATTTCCTCCCAGAGTTGCCAAGAGAA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGCTTCCAATTTCTCTTaGCAACTCTGGGAGGAAATT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQASNFS*QLWEEI
Trigger: AATTTCCTCCCAGAGTTGCCAAGAGAAATTGGAAGC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATGCTTGGTTTCTGGGTaGGCTTCTGTTTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKACLVSG*ASVCRG
Trigger: CCCTCTGCAAACAGAAGCCCACCCAGAAACCAAGCA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAATCACACCTGGCCCATaGTGTGCAGCAATCGCCAGA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIITPGP*CAAIAR
Trigger: TCTGGCGATTGCTGCACACCATGGGCCAGGTGTGAT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCATCTGCTGATCACACCTaGCCCATGGTGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPSADHT*PMVCSN
Trigger: ATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGA...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAATGCTCCTCTCCTGCTaGAGGCCACTTATACAACCC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVMLLSC*RPLIQP
Trigger: GGGTTGTATAAGTGGCCTCCAGCAGGAGAGGAGCAT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTAGAGAGGGAAGAGTaGTGGACTGTGCTGCCACTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRLEREE*WTVLPL
Trigger: CAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATTAGAGAGGGAAGAGTaGTGGACTGTGCTGCCACTG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVLEREE*WTVLPL
Trigger: CAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATCAACACGCACTCCATaGCTTGGCTTACCCACCAGA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSTRTP*LGLPTR
Trigger: TCTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACAGAACAAGTTTGGGTaGGTACAGAGGGGTCTCAGC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAQNKFG*VQRGLS
Trigger: GCTGAGACCCCTCTGTACCCACCCAAACTTGTTCTG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACAGAACAAGTTTGGGTaGGTACAGAGGGGTCTCAGC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVQNKFG*VQRGLS
Trigger: GCTGAGACCCCTCTGTACCCACCCAAACTTGTTCTG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGGCTGTGGGAAAGGTaGTGCAATCCTGTTACCCCA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRRLWER*CNPVTP
Trigger: TGGGGTAACAGGATTGCACCACCTTTCCCACAGCCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGGCACTTCTGTTTCTaGTGTGTGTCTGTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWRHFCF*CVSVCG
Trigger: TCCACACACAGACACACACCAGAAACAGAAGTGCCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGTCCTATCTTCAAATaGACTGGGAGTTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSPIFK*TGSSGP
Trigger: TGGACCAGAACTCCCAGTCCATTTGAAGATAGGACT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACGGAGAAAAGGGACCTaGTGTCTCTGTAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRRRKGT*CLCRLL
Trigger: AAGGAGCCTACAGAGACACCAGGTCCCTTTTCTCCG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATCTCGTCATCCAACATaGGTACTGACTGGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSRHPT*VLTGSW
Trigger: CCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCTCGTCATCCAACATaGGTACTGACTGGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSRHPT*VLTGSW
Trigger: CCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCGCTTTTTGTTGGGGTaGGCCTTTACTACTTCCATA +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRFLLG*AFTTSI
Trigger: TATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTTCCACCGCTCCTTGTaGGTTGAAGCTTTGGTCAAA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWFHRSL*VEALVK
Trigger: TTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGACTGAGCATTCACCATaGCATCCTCATTTACAGATG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQTEHSP*HPHLQM
Trigger: CATCTGTAAATGAGGATGCCATGGTGAATGCTCAGT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGACAGCGGCCTCCTCTaGGTAAGGTTTTTAGCAGGA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVDSGLL*VRFLAG
Trigger: TCCTGCTAAAAACCTTACCCAGAGGAGGCCGCTGTC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAATATCTTGGATCTGCTaGTCACACCTGGCCCATGGT +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPISWIC*SHLAHG
Trigger: ACCATGGGCCAGGTGTGATCAGCAGATCCAAGATAT...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATATCTTGGATCTGCTaGTCACACCTGGCCCATGGT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRISWIC*SHLAHG
Trigger: ACCATGGGCCAGGTGTGATCAGCAGATCCAAGATAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGTTAGCTGTTGGATTTaGGTTCTCAACACGCACTCC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPVSCWI*VLNTHS
Trigger: GGAGTGCGTGTTGAGAACTCAAATCCAACAGCTAAC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCTGTTATTCAGACAGTaGGTTTTGTCAACTTCAGAC +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQLLFRQ*VLSTSD
Trigger: GTCTGAAGTTGACAAAACTCACTGTCTGAATAACAG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACAGCCTCCCGTTGGCTaGGTAATGGCTTTGCATCTA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIQPPVG*VMALHL
Trigger: TAGATGCAAAGCCATTACTCAGCCAACGGGAGGCTG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAATCCAACATGGGTACTaGCTGGCTCCTGGACATACT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAIQHGY*LAPGHT
Trigger: AGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGAT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAATCCAACATGGGTACTaGCTGGCTCCTGGACATACT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVIQHGY*LAPGHT
Trigger: AGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGAT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATCCAACATGGGTACTaGCTGGCTCCTGGACATACT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRIQHGY*LAPGHT
Trigger: AGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACTCTGCCCTTTCGTTTaGATTAAGCACCGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCILCPFV*IKHRPG
Trigger: GCCTGGACGGTGCTTAATTCAAACGAAAGGGCAGAG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGCTGGTCCATCAGGCTaGACCCTAGTAACAAAGATA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPAGPSG*TLVTKI
Trigger: TATCTTTGTTACTAGGGTTCAGCCTGATGGACCAGC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACTGTGTCCATTTGCCTaGAGGATTTTATCCCCGGGC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCILCPFA*RILSPG
Trigger: GCCCGGGGATAAAATCCTTCAGGCAAATGGACACAG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGAGTCAGGCAGCTGTTaGAACATATTGGATGATAGT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELESGSC*NILDDS
Trigger: ACTATCATCCAATATGTTGCAACAGCTGCCTGACTC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAAGACACGCAGTCTCTaGATCTGCCCAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWKTRSL*ICPISS
Trigger: TGAAGAAATTGGGCAGATGCAGAGACTGCGTGTCTT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGTCAGAAAGCCACAATaGTGCAAGCTCTTTGAGTTT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELVRKPQ*CKLFEF
Trigger: AAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGAC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACAAAGGCAACAGTCATaGGCTGTTGTCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAQRQQS*AVVSAP
Trigger: AGGAGCAGAGACAACAGCGCATGACTGTTGCCTTTG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACAAAGGCAACAGTCATaGGCTGTTGTCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVQRQQS*AVVSAP
Trigger: AGGAGCAGAGACAACAGCGCATGACTGTTGCCTTTG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACAAAGGCAACAGTCATaGGCTGTTGTCTCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRQRQQS*AVVSAP
Trigger: AGGAGCAGAGACAACAGCGCATGACTGTTGCCTTTG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACACATGCTCCTCTCCTaGTGGAGGCCACTTATACAA +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAHMLLS*WRPLIQ
Trigger: TTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACACATGCTCCTCTCCTaGTGGAGGCCACTTATACAA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRHMLLS*WRPLIQ
Trigger: TTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATCTTTAGCTGTTGCCTaGAAGGACCCCACTTTCATC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSLAVA*KDPTFI
Trigger: GATGAAAGTGGGGTCCTTGCAGGCAACAGCTAAAGA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTTCTGGTCCAATTCTaGCAGGGATTGGAAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVLVQF*QGLEGG
Trigger: GCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACTCAGAATTGTGTaGAAAAGGGGGTGGAATCCT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELILRIV*KRGWNP
Trigger: AGGATTCCACCCCCTTTTGCACACAATTCTGAGTAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACAGTCATTGAAATGCTaGTCTGGCCTTCCAGCCCAC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIQSLKC*SGLPAH
Trigger: GTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAGATCAGTCATTGAAATaGTGCTCTGGCCTTCCAGCC +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPDQSLK*CSGLPA
Trigger: GGCTGGAAGGCCAGAGCAGCATTTCAATGACTGATC...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIICLSS*CLQSAG
Trigger: GCCGGCAGACTGGAGACAGCAGCTGCTTAGACATAT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGCTCCTCAATCTGATTaGCATCCAGATAGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWAPQSD*HPDRAL
Trigger: AAGAGCTCTATCTGGATGCCAATCAGATTGAGGAGC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGCTTCCAATTTCTCTTaGCAACTCTGGGAGGAAATT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELASNFS*QLWEEI
Trigger: AATTTCCTCCCAGAGTTGCCAAGAGAAATTGGAAGC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATGCTTGGTTTCTGGGTaGGCTTCTGTTTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCICLVSG*ASVCRG
Trigger: CCCTCTGCAAACAGAAGCCCACCCAGAAACCAAGCA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGACAGCCTGGCAGGTTaGAGAGTAATCCCACGCTGG +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKDSLAG*RVIPRW
Trigger: CCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAACGCACTCCATGGCTTaGCTTACCCACCAGATTTTG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVTHSMA*LTHQIL
Trigger: CAAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATCAACACGCACTCCATaGCTTGGCTTACCCACCAGA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISTRTP*LGLPTR
Trigger: TCTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCCCACAAAGAGTTATaGACGGCATCTTTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPHKEL*TASLAV
Trigger: AACAGCTAAAGATGCCGTCCATAACTCTTTGTGGGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGAAAGCATCACTCATTaGCAGCCTATCAGGACGCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRESITH*QPIRTL
Trigger: CAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATGGACTGGGAGTTCTaGTCCAATTCTGCCAGGGAT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRMDWEF*SNSARD
Trigger: ATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAACATGGGTACTGACTaGCTCCTGGACATACTGGAC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVNMGTD*LLDILD
Trigger: GTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAACATGGGTACTGACTaGCTCCTGGACATACTGGAC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRNMGTD*LLDILD
Trigger: GTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAACATGGGTACTGACTaGCTCCTGGACATACTGGAC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKANMGTD*LLDILD
Trigger: GTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATTCCACCGCTCCTTGTaGGTTGAAGCTTTGGTCAAA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPFHRSL*VEALVK
Trigger: TTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTGGCGATGTTTTTACTaGGCTGCTGTACATACTCAG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWWRCFY*AAVHTQ
Trigger: CTGAGTATGTACAGCAGCCCAGTAAAAACATCGCCA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGAACATCTGTTCCATaGGTGGGTATCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPRTSVP*VGILCR
Trigger: CCTACAGAGGATACCCACCCATGGAACAGATGTTCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTCATTTACAGATGGCTaGGAAAAGGAGAACATCTGT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSFTDG*EKENIC
Trigger: ACAGATGTTCTCCTTTTCCCAGCCATCTGTAAATGA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATCCTCATTTACAGATaGCTGGGAAAAGGAGAACAT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQILIYR*LGKGEH
Trigger: ATGTTCTCCTTTTCCCAGCCATCTGTAAATGAGGAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGACTGAGCATTCACCATaGCATCCTCATTTACAGATG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELTEHSP*HPHLQM
Trigger: CATCTGTAAATGAGGATGCCATGGTGAATGCTCAGT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAATGAGGGGATCTGGATaGGCAATGGCGATTGGAACT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAMRGSG*AMAIGT
Trigger: AGTTCCAATCGCCATTGCCCATCCAGATCCCCTCAT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGGTCTACTGTGTTCTaGAAGCTCTTCAGTAGTAAA +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRSTVF*KLFSSK
Trigger: TTTACTACTGAAGAGCTTCCAGAACACAGTAGACCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGAGTAATCCAACACTaGGATGATCTCTTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGVIQH*DDLFLS
Trigger: GGAGAGGAAGAGATCATCTCAGTGTTGGATTACTCC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAGGAGGTTGGCAGACTTaGGAGGTCATTATCAGGAAT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAGGWQT*EVIIRN
Trigger: ATTCCTGATAATGACCTCTCAAGTCTGCCAACCTCC...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGAGGTTGGCAGACTTaGGAGGTCATTATCAGGAAT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGGWQT*EVIIRN
Trigger: ATTCCTGATAATGACCTCTCAAGTCTGCCAACCTCC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGTACACCGTTTTTACTaGTGTCGAGTTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWVHRFY*CRVLSG
Trigger: ACCTGAAAGAACTCGACATCAGTAAAAACGGTGTAC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATCAGCTAATGAAGGGTaGAGTTCCCCAATCCTCATT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSANEG*SSPILI
Trigger: AATGAGGATTGGGGAACTTCACCCTTCATTAGCTGA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCTGTTATTCAGACAGTaGGTTTTGTCAACTTCAGAC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELLLFRQ*VLSTSD
Trigger: GTCTGAAGTTGACAAAACTCACTGTCTGAATAACAG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGGGCGGCAGTGGATTTaGGAAAAGACATTACCGAGA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIGRQWI*EKTLPR
Trigger: TCTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAACTTTATATCTTTCATaGGCGGGGAAAGCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPTLYLS*AGKASL
Trigger: CAGAGAGGCTTTCCCCGCTCATGAAAGATATAAAGT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGAATGGTCACTTTGTTaGTGTTCCCTTCATATGGCT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWEWSLC*CSLHMA
Trigger: AGCCATATGAAGGGAACATCAACAAAGTGACCATTC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCACCTTGTCAGAAGGTTTaGAAGGATTTCCTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPPCQKV*KDFLAH
Trigger: GTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGG...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACCTTGTCAGAAGGTTTaGAAGGATTTCCTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRPCQKV*KDFLAH
Trigger: GTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGCTGGTCCATCAGGCTaGACCCTAGTAACAAAGATA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVAGPSG*TLVTKI
Trigger: TATCTTTGTTACTAGGGTTCAGCCTGATGGACCAGC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAAGAAATTCGAGGAATaGGTCATTCAGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWKKFEE*VIQVEL
Trigger: CAGCTCTACCTGAATGACGCATTCCTCGAATTTCTT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGACCCAGGCAGCACTTaGAATGCATTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRDPGST*NALLSI
Trigger: GATGGATAACAATGCATTGCAAGTGCTGCCTGGGTC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGACCCAGGCAGCACTTaGAATGCATTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVDPGST*NALLSI
Trigger: GATGGATAACAATGCATTGCAAGTGCTGCCTGGGTC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACGCAGTCTCTGCATCTaGCCAATTTCTTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRRSLCI*PISSGR
Trigger: TCTTCCTGAAGAAATTGGGCAGATGCAGAGACTGCG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACGCAGTCTCTGCATCTaGCCAATTTCTTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKARSLCI*PISSGR
Trigger: TCTTCCTGAAGAAATTGGGCAGATGCAGAGACTGCG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACGCAGTCTCTGCATCTaGCCAATTTCTTCAGGAAGA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVRSLCI*PISSGR
Trigger: TCTTCCTGAAGAAATTGGGCAGATGCAGAGACTGCG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGTCAGAAAGCCACAATaGTGCAAGCTCTTTGAGTTT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWVRKPQ*CKLFEF
Trigger: AAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGAC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACACATGCTCCTCTCCTaGTGGAGGCCACTTATACAA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIHMLLS*WRPLIQ
Trigger: TTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAAGAGTGGTGGACTGTaGTGCCACTGGCAATGGAGC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKKSGGL*CHWQWS
Trigger: GCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATCTTTAGCTGTTGCCTaGAAGGACCCCACTTTCATC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSLAVA*KDPTFI
Trigger: GATGAAAGTGGGGTCCTTGCAGGCAACAGCTAAAGA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCTTTAGCTGTTGCCTaGAAGGACCCCACTTTCATC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSLAVA*KDPTFI
Trigger: GATGAAAGTGGGGTCCTTGCAGGCAACAGCTAAAGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCACCGACAATCCTTTCTTaGCTAATTAAAGGCCTGCGC +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPPTILS*LIKGLR
Trigger: GCGCAGGCCTTTAATTAGGCAAGAAAGGATTGTCGG...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATACTGGACATGCCATaGTCTGGTCCCAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRILDMP*SGPKNL
Trigger: CAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATGTTTTTACTGGGCTaGTGTACATACTCAGAATTG +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQMFLLG*CTYSEL
Trigger: CAATTCTGAGTATGTACAGCAGCCCAGTAAAAACAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGATCAGTCATTGAAATaGTGCTCTGGCCTTCCAGCC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIDQSLK*CSGLPA
Trigger: GGCTGGAAGGCCAGAGCAGCATTTCAATGACTGATC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAACTGCTGTCTCCAGTCTaGCGGCATTTTGCCACAGCT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKLLSPV*RHFATA
Trigger: AGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAG...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACTGAATGTGGCTGCCTaGCTTTTTAGTAATGGTGTC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPLNVAA*LFSNGV
Trigger: GACACCATTACTAAAAAGGCAGGCAGCCACATTCAG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPLKGFP*PLIPPL
Trigger: CAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACATTGTCTAAAATGTTaGTTTGCTGGGACGGGGTCC +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAHCLKC*FAGTGS
Trigger: GGACCCCGTCCCAGCAAAGCAACATTTTAGACAATG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200137.5
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGCTCCTCAATCTGATTaGCATCCAGATAGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPAPQSD*HPDRAL
Trigger: AAGAGCTCTATCTGGATGCCAATCAGATTGAGGAGC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGCTGTTGCAACATATTaGATGATAGTAAGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELAVATY*MIVRGP
Trigger: AGGACCTCTTACTATCATCCAATATGTTGCAACAGC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATTCTCTTGGCAACTCTaGGAGGAAATTCTCGTCAAC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPFSWQL*EEILVN
Trigger: GTTGACGAGAATTTCCTCCCAGAGTTGCCAAGAGAA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCATTAGTACCCTTTGCTTaGTTTCTGGGTGGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPLVPFA*FLGGLL
Trigger: CAGAAGCCCACCCAGAAACCAAGCAAAGGGTACTAA...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATTAGTACCCTTTGCTTaGTTTCTGGGTGGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVLVPFA*FLGGLL
Trigger: CAGAAGCCCACCCAGAAACCAAGCAAAGGGTACTAA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTAGTACCCTTTGCTTaGTTTCTGGGTGGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRLVPFA*FLGGLL
Trigger: CAGAAGCCCACCCAGAAACCAAGCAAAGGGTACTAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAACGCACTCCATGGCTTaGCTTACCCACCAGATTTTG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCITHSMA*LTHQIL
Trigger: CAAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACTAGCAGAACAAGTTTaGGTGGGTACAGAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCILAEQV*VGTEGS
Trigger: AGACCCCTCTGTACCCACCCAAACTTGTTCTGCTAG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCCCACAAAGAGTTATaGACGGCATCTTTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPHKEL*TASLAV
Trigger: AACAGCTAAAGATGCCGTCCATAACTCTTTGTGGGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGTGTGTGTCTGTGTGTaGACTGCTCCAGTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKVCVCV*TAPVPG
Trigger: CCCTGGAACTGGAGCAGTCCACACACAGACACACAC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGGCACTTCTGTTTCTaGTGTGTGTCTGTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVRHFCF*CVSVCG
Trigger: TCCACACACAGACACACACCAGAAACAGAAGTGCCT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGGCACTTCTGTTTCTaGTGTGTGTCTGTGTGTGGA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRRHFCF*CVSVCG
Trigger: TCCACACACAGACACACACCAGAAACAGAAGTGCCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGTCCTATCTTCAAATaGACTGGGAGTTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSPIFK*TGSSGP
Trigger: TGGACCAGAACTCCCAGTCCATTTGAAGATAGGACT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGGGTTGTTTCTAATTTaGAAGGAAAAGCAGTCCTAT +
Preference number: 4 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQGLFLI*KEKQSY
Trigger: ATAGGACTGCTTTTCCTTCCAAATTAGAAACAACCC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGTAGGCTCCTTCATGTaGTCTTTTCTTTCAGGCAAG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPVGSFM*SFLSGK
Trigger: CTTGCCTGAAAGAAAAGACCACATGAAGGAGCCTAC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAACCTTTAGACGAATCTaGGCGGCAGTGGATTTGAGA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVTFRRI*AAVDLR
Trigger: TCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGGCTCCTGGACATACTaGACATGCCATGCTCTGGTC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKGSWTY*TCHALV
Trigger: GACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTACTGACTGGCTCCTaGACATACTGGACATGCCAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVLTGS*TYWTCH
Trigger: ATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACGCTTTTTGTTGGGGTaGGCCTTTACTACTTCCATA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPRFLLG*AFTTSI
Trigger: TATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTCCACCGCTCCTTGTaGGTTGAAGCTTTGGTCAAA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRFHRSL*VEALVK
Trigger: TTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATGGCGATGTTTTTACTaGGCTGCTGTACATACTCAG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPWRCFY*AAVHTQ
Trigger: CTGAGTATGTACAGCAGCCCAGTAAAAACATCGCCA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACATCTGTTCCATGGGTaGGTATCCTCTGTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIHLFHG*VSSVGS
Trigger: AGAGCCTACAGAGGATACCCACCCATGGAACAGATG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGAACATCTGTTCCATaGGTGGGTATCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVRTSVP*VGILCR
Trigger: CCTACAGAGGATACCCACCCATGGAACAGATGTTCT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAGAACATCTGTTCCATaGGTGGGTATCCTCTGTAGG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKARTSVP*VGILCR
Trigger: CCTACAGAGGATACCCACCCATGGAACAGATGTTCT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTTCCTCTTGAGGAATTaGGGATCAGTCATTGAAATG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELFLLRN*GSVIEM
Trigger: CATTTCAATGACTGATCCCCAATTCCTCAAGAGGAA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGTTTCCGTAGAGCTTaGCAGTTGAACAATTGCTTA +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSFRRA*QLNNCL
Trigger: TAAGCAATTGTTCAACTGTCAAGCTCTACGGAAACT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGGAGGTTGGCAGACTTaGGAGGTCATTATCAGGAAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIGGWQT*EVIIRN
Trigger: ATTCCTGATAATGACCTCTCAAGTCTGCCAACCTCC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGTACACCGTTTTTACTaGTGTCGAGTTCTTTCAGGT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPVHRFY*CRVLSG
Trigger: ACCTGAAAGAACTCGACATCAGTAAAAACGGTGTAC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACTTCAGGCAGCTCGCTaGATTCATTATTGCCTAGGT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCILQAAR*IHYCLG
Trigger: ACCTAGGCAATAATGAATTCAGCGAGCTGCCTGAAG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATTTCAGCAATCCTATTaGGTCAGGCAGCTGTTGCAA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVFQQSY*VRQLLQ
Trigger: TTGCAACAGCTGCCTGACTCAATAGGATTGCTGAAA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAATAAGGGCCTTGGACTaGTTGTCAGAAAGCCACAAT +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPIRALD*LSESHN
Trigger: ATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTAT...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAATAAGGGCCTTGGACTaGTTGTCAGAAAGCCACAAT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAIRALD*LSESHN
Trigger: ATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTAT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTTAGCTGTTGGATTTaGGTTCTCAACACGCACTCC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVSCWI*VLNTHS
Trigger: GGAGTGCGTGTTGAGAACTCAAATCCAACAGCTAAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATTTCATTAGCTGGATaGACAAAAGAATCCTCCACT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELISLAG*TKESST
Trigger: AGTGGAGGATTCTTTTGTTCATCCAGCTAATGAAAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATCAGCTAATGAAGGGTaGAGTTCCCCAATCCTCATT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSANEG*SSPILI
Trigger: AATGAGGATTGGGGAACTTCACCCTTCATTAGCTGA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAACTTTATATCTTTCATaGGCGGGGAAAGCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRTLYLS*AGKASL
Trigger: CAGAGAGGCTTTCCCCGCTCATGAAAGATATAAAGT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAACTTTATATCTTTCATaGGCGGGGAAAGCCTCTCTG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKATLYLS*AGKASL
Trigger: CAGAGAGGCTTTCCCCGCTCATGAAAGATATAAAGT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACCTTGTCAGAAGGTTTaGAAGGATTTCCTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIPCQKV*KDFLAH
Trigger: GTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAACAGTGAGCTCACGTTaGATAACTAGGTCTACTGTG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVTVSSR*ITRSTV
Trigger: CACAGTAGACCTAGTTATTCAACGTGAGCTCACTGT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAAGAAATTCGAGGAATaGGTCATTCAGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPKKFEE*VIQVEL
Trigger: CAGCTCTACCTGAATGACGCATTCCTCGAATTTCTT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGGCAGCACTTGCAATaGATTGTTATCCATCCACAG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVRQHLQ*IVIHPQ
Trigger: CTGTGGATGGATAACAATGCATTGCAAGTGCTGCCT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAGGCAGCACTTGCAATaGATTGTTATCCATCCACAG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKARQHLQ*IVIHPQ
Trigger: CTGTGGATGGATAACAATGCATTGCAAGTGCTGCCT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGACCCAGGCAGCACTTaGAATGCATTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIDPGST*NALLSI
Trigger: GATGGATAACAATGCATTGCAAGTGCTGCCTGGGTC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGAGTCAGGCAGCTGTTaGAACATATTGGATGATAGT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPESGSC*NILDDS
Trigger: ACTATCATCCAATATGTTGCAACAGCTGCCTGACTC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAAAGACACGCAGTCTCTaGATCTGCCCAATTTCTTCA +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPKTRSL*ICPISS
Trigger: TGAAGAAATTGGGCAGATGCAGAGACTGCGTGTCTT...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGTCAGAAAGCCACAATaGTGCAAGCTCTTTGAGTTT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPVRKPQ*CKLFEF
Trigger: AAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGAC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGTAGTCTGAGTAGGTaGCTGAGGAGACACTGTTAT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSSLSR*LRRHCY
Trigger: ATAACAGTGTCTCCTCAGGCACCTACTCAGACTACT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGTAGTCTGAGTAGGTaGCTGAGGAGACACTGTTAT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSSLSR*LRRHCY
Trigger: ATAACAGTGTCTCCTCAGGCACCTACTCAGACTACT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACCGACAATCCTTTCTTaGCTAATTAAAGGCCTGCGC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIPTILS*LIKGLR
Trigger: GCGCAGGCCTTTAATTAGGCAAGAAAGGATTGTCGG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAATGTCTGTGTGTGGACTaGTCCAGTTCCAGGGGAACA +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKCLCVD*SSSRGT
Trigger: TGTTCCCCTGGAACTGGAGCAGTCCACACACAGACA...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAATACTGGACATGCCATaGTCTGGTCCCAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIILDMP*SGPKNL
Trigger: CAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTAT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATGTTTTTACTGGGCTaGTGTACATACTCAGAATTG +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELMFLLG*CTYSEL
Trigger: CAATTCTGAGTATGTACAGCAGCCCAGTAAAAACAT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAACCCCATAACTCTCTGTaGTGTAGCTCCTGGCAGACA +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKPHNSL*CSSWQT
Trigger: TGTCTGCCAGGAGCTACAGCACAGAGAGTTATGGGG...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACTGAATGTGGCTGCCTaGCTTTTTAGTAATGGTGTC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRLNVAA*LFSNGV
Trigger: GACACCATTACTAAAAAGGCAGGCAGCCACATTCAG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCATTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTG +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPLKGFP*PLIPPL
Trigger: CAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAA...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVLKGFP*PLIPPL
Trigger: CAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKALKGFP*PLIPPL
Trigger: CAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCATCAAGTCTTTCCAGCTaGGCTAACTTGTGCATTGAC +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPSSLSS*ANLCID
Trigger: GTCAATGCACAAGTTAGCCCAGCTGGAAAGACTTGA...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCAAGTCTTTCCAGCTaGGCTAACTTGTGCATTGAC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSSLSS*ANLCID
Trigger: GTCAATGCACAAGTTAGCCCAGCTGGAAAGACTTGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGCTGTTGCAACATATTaGATGATAGTAAGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWAVATY*MIVRGP
Trigger: AGGACCTCTTACTATCATCCAATATGTTGCAACAGC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTCTCTTGGCAACTCTaGGAGGAAATTCTCGTCAAC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRFSWQL*EEILVN
Trigger: GTTGACGAGAATTTCCTCCCAGAGTTGCCAAGAGAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAATCTGCTGATCACACCTaGCCCATGGTGTGCAGCAAT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKSADHT*PMVCSN
Trigger: ATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGA...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCCTCATTTCATTAGCTaGATGAACAAAAGAATCCTC +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELPHFIS*MNKRIL
Trigger: GAGGATTCTTTTGTTCATCCAGCTAATGAAATGAGG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAGTCCTATCTTCAAATaGACTGGGAGTTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKASPIFK*TGSSGP
Trigger: TGGACCAGAACTCCCAGTCCATTTGAAGATAGGACT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAGTCCTATCTTCAAATaGACTGGGAGTTCTGGTCCA +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVSPIFK*TGSSGP
Trigger: TGGACCAGAACTCCCAGTCCATTTGAAGATAGGACT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAACCTTTAGACGAATCTaGGCGGCAGTGGATTTGAGA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCITFRRI*AAVDLR
Trigger: TCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACGCTTTTTGTTGGGGTaGGCCTTTACTACTTCCATA +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRRFLLG*AFTTSI
Trigger: TATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATGGCGATGTTTTTACTaGGCTGCTGTACATACTCAG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVWRCFY*AAVHTQ
Trigger: CTGAGTATGTACAGCAGCCCAGTAAAAACATCGCCA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATGGCGATGTTTTTACTaGGCTGCTGTACATACTCAG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRWRCFY*AAVHTQ
Trigger: CTGAGTATGTACAGCAGCCCAGTAAAAACATCGCCA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCATTTACAGATGGCTaGGAAAAGGAGAACATCTGT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSFTDG*EKENIC
Trigger: ACAGATGTTCTCCTTTTCCCAGCCATCTGTAAATGA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGATCCTCATTTACAGATaGCTGGGAAAAGGAGAACAT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWILIYR*LGKGEH
Trigger: ATGTTCTCCTTTTCCCAGCCATCTGTAAATGAGGAT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATTTCAGCAATCCTATTaGGTCAGGCAGCTGTTGCAA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIFQQSY*VRQLLQ
Trigger: TTGCAACAGCTGCCTGACTCAATAGGATTGCTGAAA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAATAAGGGCCTTGGACTaGTTGTCAGAAAGCCACAAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIIRALD*LSESHN
Trigger: ATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTAT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACTGTTATTCAGACAGTaGGTTTTGTCAACTTCAGAC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPLLFRQ*VLSTSD
Trigger: GTCTGAAGTTGACAAAACTCACTGTCTGAATAACAG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAACCGCTCCTTGTGGGTTaGAGCTTTGGTCAAACTGAT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKPLLVG*SFGQTD
Trigger: ATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGG...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATTTCACTTCTTGATATaGAGGGTGCTCATCTTCGTA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPFHFLI*RVLIFV
Trigger: TACGAAGATGAGCACCCTTCATATCAAGAAGTGAAA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGAATGGTCACTTTGTTaGTGTTCCCTTCATATGGCT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVEWSLC*CSLHMA
Trigger: AGCCATATGAAGGGAACATCAACAAAGTGACCATTC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGTCATTATCAGGAATaGTTAGTTTCCGTAGAGCTT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGHYQE*LVSVEL
Trigger: AAGCTCTACGGAAACTAAGCATTCCTGATAATGACC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGTCAGGTTAAGAAGCTaGGTGAAGCCATCGGGTAGT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKVRLRS*VKPSGS
Trigger: ACTACCCGATGGCTTCACGCAGCTTCTTAACCTGAC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAAAGAAATTCGAGGAATaGGTCATTCAGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVKKFEE*VIQVEL
Trigger: CAGCTCTACCTGAATGACGCATTCCTCGAATTTCTT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAAGAAATTCGAGGAATaGGTCATTCAGGTAGAGCTG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRKKFEE*VIQVEL
Trigger: CAGCTCTACCTGAATGACGCATTCCTCGAATTTCTT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGAGTCAGGCAGCTGTTaGAACATATTGGATGATAGT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVESGSC*NILDDS
Trigger: ACTATCATCCAATATGTTGCAACAGCTGCCTGACTC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAAGTAGTCTGAGTAGGTaGCTGAGGAGACACTGTTAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISSLSR*LRRHCY
Trigger: ATAACAGTGTCTCCTCAGGCACCTACTCAGACTACT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATACTCAGAATTGTGTaGAAAAGGGGGTGGAATCCT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRILRIV*KRGWNP
Trigger: AGGATTCCACCCCCTTTTGCACACAATTCTGAGTAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGATGTTTTTACTGGGCTaGTGTACATACTCAGAATTG +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWMFLLG*CTYSEL
Trigger: CAATTCTGAGTATGTACAGCAGCCCAGTAAAAACAT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGATCAGTCATTGAAATaGTGCTCTGGCCTTCCAGCC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKDQSLK*CSGLPA
Trigger: GGCTGGAAGGCCAGAGCAGCATTTCAATGACTGATC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAATGCTTCTGCCTGCATaGATTGCTGAAATACCTCCA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIMLLPA*IAEIPP
Trigger: TGGAGGTATTTCAGCAATGCATGCAGGCAGAAGCAT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACATTGTCTAAAATGTTaGTTTGCTGGGACGGGGTTT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAHCLKC*FAGTGF
Trigger: AAACCCCGTCCCAGCAAAGCAACATTTTAGACAATG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAAAACTGTGTCCATTTaGCTGAAGGATTTTATCCCC +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPKTVSI*LKDFIP
Trigger: GGGGATAAAATCCTTCAGGCAAATGGACACAGTTTT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGCACTTTATGTTTTCTaGAAATTCTTGTACACCGTT +
Preference number: 4 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELALYVF*KFLYTV
Trigger: AACGGTGTACAAGAATTTCCAGAAAACATAAAGTGC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCACTGGCTTCAATTATaGTTAAACACTTACAGCACT +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWHWLQL*LNTYST
Trigger: AGTGCTGTAAGTGTTTAACCATAATTGAAGCCAGTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATCAAGTCTTTCCAGCTaGGCTAACTTGTGCATTGAC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISSLSS*ANLCID
Trigger: GTCAATGCACAAGTTAGCCCAGCTGGAAAGACTTGA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGCTTCCAATTTCTCTTaGCAACTCTGGGAGGAAATT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVASNFS*QLWEEI
Trigger: AATTTCCTCCCAGAGTTGCCAAGAGAAATTGGAAGC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCTCATTTCATTAGCTaGATGAACAAAAGAATCCTC +
Preference number: 4 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPHFIS*MNKRIL
Trigger: GAGGATTCTTTTGTTCATCCAGCTAATGAAATGAGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACCCCACAAAGAGTTATaGACGGCATCTTTAGCTGTT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIPHKEL*TASLAV
Trigger: AACAGCTAAAGATGCCGTCCATAACTCTTTGTGGGG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAACTGAGCATTCACCATaGCATCCTCATTTACAGATG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRTEHSP*HPHLQM
Trigger: CATCTGTAAATGAGGATGCCATGGTGAATGCTCAGT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAACTGAGCATTCACCATaGCATCCTCATTTACAGATG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVTEHSP*HPHLQM
Trigger: CATCTGTAAATGAGGATGCCATGGTGAATGCTCAGT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAACTCCCTTCACAGGGGTaGGCCTTGTCTTTATATCAC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKLPSQG*ALSLYH
Trigger: GTGATATAAAGACAAGGCCCACCCCTGTGAAGGGAG...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGGTCTACTGTGTTCTaGAAGCTCTTCAGTAGTAAA +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPRSTVF*KLFSSK
Trigger: TTTACTACTGAAGAGCTTCCAGAACACAGTAGACCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAACTTCTCTGATATTGTaGGGGATTCCTTCCCCGTAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCITSLIL*GIPSPY
Trigger: ATACGGGGAAGGAATCCCCCACAATATCAGAGAAGT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGTAGAGTTTTCAAGTaGTTTTCTCTTAACTCCAGT +
Preference number: 4 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGRVFK*FSLNSS
Trigger: ACTGGAGTTAAGAGAAAATCACTTGAAAACTCTACC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGTCATTATCAGGAATaGTTAGTTTCCGTAGAGCTT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGHYQE*LVSVEL
Trigger: AAGCTCTACGGAAACTAAGCATTCCTGATAATGACC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGGTCATTATCAGGAATaGTTAGTTTCCGTAGAGCTT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVGHYQE*LVSVEL
Trigger: AAGCTCTACGGAAACTAAGCATTCCTGATAATGACC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGACCCAGGCAGCACTTaGAATGCATTGTTATCCATC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKDPGST*NALLSI
Trigger: GATGGATAACAATGCATTGCAAGTGCTGCCTGGGTC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCATTTTCTTTCACAGTTTaGTCCGTGTTAGCTGTTGGA +
Preference number: 4 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPFSFTV*SVLAVG
Trigger: TCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAA...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATTTTCTTTCACAGTTTaGTCCGTGTTAGCTGTTGGA +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAFSFTV*SVLAVG
Trigger: TCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGCAAGTTTAAAGTCATaGTTCTGCCTGCATGCATTG +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIASLKS*FCLHAL
Trigger: CAATGCATGCAGGCAGAAGCATGACTTTAAACTTGC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAATCCTCATTTACAGATaGCTGGGAAAAGGAGAACAT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAILIYR*LGKGEH
Trigger: ATGTTCTCCTTTTCCCAGCCATCTGTAAATGAGGAT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTCCTCTTGAGGAATTaGGGATCAGTCATTGAAATG +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRFLLRN*GSVIEM
Trigger: CATTTCAATGACTGATCCCCAATTCCTCAAGAGGAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATTCCTCTTGAGGAATTaGGGATCAGTCATTGAAATG +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVFLLRN*GSVIEM
Trigger: CATTTCAATGACTGATCCCCAATTCCTCAAGAGGAA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAGGTCTACTGTGTTCTaGAAGCTCTTCAGTAGTAAA +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKARSTVF*KLFSSK
Trigger: TTTACTACTGAAGAGCTTCCAGAACACAGTAGACCT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAAAATGTTGCTTTGCTaGGACGGGGTCCTGTCTAAC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKKMLLC*DGVLSN
Trigger: GTTAGACAGGACCCCGTCCCAGCAAAGCAACATTTT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
41% GC, longest homopolymer 7 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000200137.5
CDS-3UTR TCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGGTAGAGTTTTCAAGTaGTTTTCTCTTAACTCCAGT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVGRVFK*FSLNSS
Trigger: ACTGGAGTTAAGAGAAAATCACTTGAAAACTCTACC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAGGTAGAGTTTTCAAGTaGTTTTCTCTTAACTCCAGT +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAGRVFK*FSLNSS
Trigger: ACTGGAGTTAAGAGAAAATCACTTGAAAACTCTACC...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAATCAGCTAATGAAGGGTaGAGTTCCCCAATCCTCATT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKSANEG*SSPILI
Trigger: AATGAGGATTGGGGAACTTCACCCTTCATTAGCTGA...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATTTCACTTCTTGATATaGAGGGTGCTCATCTTCGTA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIFHFLI*RVLIFV
Trigger: TACGAAGATGAGCACCCTTCATATCAAGAAGTGAAA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAACAGTGAGCTCACGTTaGATAACTAGGTCTACTGTG +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKTVSSR*ITRSTV
Trigger: CACAGTAGACCTAGTTATTCAACGTGAGCTCACTGT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAGGCAGCACTTGCAATaGATTGTTATCCATCCACAG +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKRQHLQ*IVIHPQ
Trigger: CTGTGGATGGATAACAATGCATTGCAAGTGCTGCCT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATTTTCTTTCACAGTTTaGTCCGTGTTAGCTGTTGGA +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIFSFTV*SVLAVG
Trigger: TCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR GCA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAATGTTTTTACTGGGCTaGTGTACATACTCAGAATTG +
Preference number: 4 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAMFLLG*CTYSEL
Trigger: CAATTCTGAGTATGTACAGCAGCCCAGTAAAAACAT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAAAAACTGTGTCCATTTaGCTGAAGGATTTTATCCCC +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIKTVSI*LKDFIP
Trigger: GGGGATAAAATCCTTCAGGCAAATGGACACAGTTTT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACACTGGCTTCAATTATaGTTAAACACTTACAGCACT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVHWLQL*LNTYST
Trigger: AGTGCTGTAAGTGTTTAACCATAATTGAAGCCAGTG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGCTGTTGCAACATATTaGATGATAGTAAGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIAVATY*MIVRGP
Trigger: AGGACCTCTTACTATCATCCAATATGTTGCAACAGC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACCTCATTTCATTAGCTaGATGAACAAAAGAATCCTC +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVPHFIS*MNKRIL
Trigger: GAGGATTCTTTTGTTCATCCAGCTAATGAAATGAGG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACCTCATTTCATTAGCTaGATGAACAAAAGAATCCTC +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRPHFIS*MNKRIL
Trigger: GAGGATTCTTTTGTTCATCCAGCTAATGAAATGAGG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGGTTGTTTCTAATTTaGAAGGAAAAGCAGTCCTAT +
Preference number: 4 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGLFLI*KEKQSY
Trigger: ATAGGACTGCTTTTCCTTCCAAATTAGAAACAACCC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGGGTTGTTTCTAATTTaGAAGGAAAAGCAGTCCTAT +
Preference number: 4 (lower is better)
Translates to: LALMFAIGPATGKICFYVGLFLI*KEKQSY
Trigger: ATAGGACTGCTTTTCCTTCCAAATTAGAAACAACCC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGTAGGCTCCTTCATGTaGTCTTTTCTTTCAGGCAAG +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKVGSFM*SFLSGK
Trigger: CTTGCCTGAAAGAAAAGACCACATGAAGGAGCCTAC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATCATTTACAGATGGCTaGGAAAAGGAGAACATCTGT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISFTDG*EKENIC
Trigger: ACAGATGTTCTCCTTTTCCCAGCCATCTGTAAATGA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGAATGGTCACTTTGTTaGTGTTCCCTTCATATGGCT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKEWSLC*CSLHMA
Trigger: AGCCATATGAAGGGAACATCAACAAAGTGACCATTC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGGGTTGTTTCTAATTTaGAAGGAAAAGCAGTCCTAT +
Preference number: 4 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIGLFLI*KEKQSY
Trigger: ATAGGACTGCTTTTCCTTCCAAATTAGAAACAACCC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR TCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAGTTTCCGTAGAGCTTaGCAGTTGAACAATTGCTTA +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKSFRRA*QLNNCL
Trigger: TAAGCAATTGTTCAACTGTCAAGCTCTACGGAAACT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR GCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAAAACTGTGTCCATTTaGCTGAAGGATTTTATCCCC +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKKTVSI*LKDFIP
Trigger: GGGGATAAAATCCTTCAGGCAAATGGACACAGTTTT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
38% GC, longest homopolymer 7 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAATTCCTCTTGAGGAATTaGGGATCAGTCATTGAAATG +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKFLLRN*GSVIEM
Trigger: CATTTCAATGACTGATCCCCAATTCCTCAAGAGGAA...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR TCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGGTAGAGTTTTCAAGTaGTTTTCTCTTAACTCCAGT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKGRVFK*FSLNSS
Trigger: ACTGGAGTTAAGAGAAAATCACTTGAAAACTCTACC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CCA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGCACTTTATGTTTTCTaGAAATTCTTGTACACCGTT +
Preference number: 4 (lower is better)
Translates to: KNPQELRLMISVDHSSEKALYVF*KFLYTV
Trigger: AACGGTGTACAAGAATTTCCAGAAAACATAAAGTGC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS CCA 90 bp CGGTGGAGCTGGCCAGGGAGTCAGCCCTCCTTAGGAAGCCTGCCCTaGGCCCCTGGCTGGCGAACTGAGCATTCACCATGGCATCCTCAT +
Preference number: 5 (lower is better)
Translates to: RWSWPGSQPSLGSLP*APGWRTEHSPWHPH
Trigger: ATGAGGATGCCATGGTGAATGCTCAGTTCGCCAGCCAGGGGCCCAGGGCAGGCTTCCTAAGGAGGGCTGACTCCCTGGCCAGCTCCACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp GCCAGCTGGGGGTCACTCTGGGGGACGGGCATATCTTGGATCTGCTaGTCACACCTGGCCCATGGTGTGCAGCAATCGCCAGACAGCCTG +
Preference number: 5 (lower is better)
Translates to: ASWGSLWGTGISWIC*SHLAHGVQQSPDSL
Trigger: CAGGCTGTCTGGCGATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCCCAGAGTGACCCCCAGCTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp CAGCAATCGCCAGACAGCCTGGCAGGTTGGAGAGTAATCCCACGCTaGCCCCTGTCCCAGGGGGCTTGGCAGGAGAGAGCCTTAACTTTC +
Preference number: 5 (lower is better)
Translates to: QQSPDSLAGWRVIPR*PLSQGAWQERALTF
Trigger: GAAAGTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCTGGCGATTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp TGGGCACCTGTTGCAGGCTGCAGTGGGAGTAATCCAACACTGAGATaGTCTCTTCCTCTCCACGGAAGCAGCGGCATGGCACCAGGCGGC +
Preference number: 5 (lower is better)
Translates to: WAPVAGCSGSNPTLR*SLPLHGSSGMAPGG
Trigger: GCCGCCTGGTGCCATGCCGCTGCTTCCGTGGAGAGGAAGAGATCATCTCAGTGTTGGATTACTCCCACTGCAGCCTGCAACAGGTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GGTCACTCTGGGGGACGGGCATATCTTGGATCTGCTGATCACACCTaGCCCATGGTGTGCAGCAATCGCCAGACAGCCTGGCAGGTTGGA +
Preference number: 5 (lower is better)
Translates to: GHSGGRAYLGSADHT*PMVCSNRQTAWQVG
Trigger: TCCAACCTGCCAGGCTGTCTGGCGATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCCCAGAGTGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GACTGTGCTGCCACTGGCAATGGAGCACACATGCTCCTCTCCTGCTaGAGGCCACTTATACAACCCCATGCCAGCTGGGGGTCACTCTGG +
Preference number: 5 (lower is better)
Translates to: DCAATGNGAHMLLSC*RPLIQPHASWGSLW
Trigger: CCAGAGTGACCCCCAGCTGGCATGGGGTTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCACAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp CAGGACGCTGGGGGATGTTCCCTGGAGGGACAGCCTCCCGTTGGCTaGGTAATGGCTTTGCATCTAGAGGCTGTGGGAAAGGTGGTGCAA +
Preference number: 5 (lower is better)
Translates to: QDAGGCSLEGQPPVG*VMALHLEAVGKVVQ
Trigger: TTGCACCACCTTTCCCACAGCCTCTAGATGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCCTCCAGGGAACATCCCCCAGCGTCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAGACAGCCTGGCAGGTaGGAGAGTAATCCCACGCTG +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCARQPGR*ESNPTL
Trigger: CAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp CTCCTTGGGCACCTGTTGCAGGCTGCAGTGGGAGTAATCCAACACTaGGATGATCTCTTCCTCTCCACGGAAGCAGCGGCATGGCACCAG +
Preference number: 5 (lower is better)
Translates to: LLGHLLQAAVGVIQH*DDLFLSTEAAAWHQ
Trigger: CTGGTGCCATGCCGCTGCTTCCGTGGAGAGGAAGAGATCATCTCAGTGTTGGATTACTCCCACTGCAGCCTGCAACAGGTGCCCAAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp CAACAGTCATGCGCTGTTGTCTCTGCTCCTCCCACAGGGTGGGGTTaGAGCTGTCGCTGTCTGACTGGAAATCTTCGTCACCACGGGGCT +
Preference number: 5 (lower is better)
Translates to: QQSCAVVSAPPTGWG*SCRCLTGNLRHHGA
Trigger: AGCCCCGTGGTGACGAAGATTTCCAGTCAGACAGCGACAGCTTCAACCCCACCCTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp AGGGAAGAGTGGTGGACTGTGCTGCCACTGGCAATGGAGCACACATaGTCCTCTCCTGCTGGAGGCCACTTATACAACCCCATGCCAGCT +
Preference number: 5 (lower is better)
Translates to: REEWWTVLPLAMEHT*SSPAGGHLYNPMPA
Trigger: AGCTGGCATGGGGTTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GCAGGTTGGAGAGTAATCCCACGCTGGCCCCTGTCCCAGGGGGCTTaGCAGGAGAGAGCCTTAACTTTCCCAGCACTTTCGTCATCTTCT +
Preference number: 5 (lower is better)
Translates to: AGWRVIPRWPLSQGA*QERALTFPALSSSS
Trigger: AGAAGATGACGAAAGTGCTGGGAAAGTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCTCCAACCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp CTGGGGGACGGGCATATCTTGGATCTGCTGATCACACCTGGCCCATaGTGTGCAGCAATCGCCAGACAGCCTGGCAGGTTGGAGAGTAAT +
Preference number: 5 (lower is better)
Translates to: LGDGHILDLLITPGP*CAAIARQPGRLESN
Trigger: ATTACTCTCCAACCTGCCAGGCTGTCTGGCGATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp CTATCAGGACGCTGGGGGATGTTCCCTGGAGGGACAGCCTCCCGTTaGCTGAGTAATGGCTTTGCATCTAGAGGCTGTGGGAAAGGTGGT +
Preference number: 5 (lower is better)
Translates to: LSGRWGMFPGGTASR*LSNGFASRGCGKGG
Trigger: ACCACCTTTCCCACAGCCTCTAGATGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCCTCCAGGGAACATCCCCCAGCGTCCTGATAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAACAGTCATGCGCTGTaGTCTCTGCTCCTCCCACAG +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCANSHAL*SLLLPQ
Trigger: CTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGGGGACGGGCATATCTaGGATCTGCTGATCACACCT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAGDGHI*DLLITP
Trigger: AGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp CCCTTCATATGGCTGCTGCTCCCGGCTGCGGTGCTGAAGGCTCTGTaGCCCCATCAGGGTCTGAATGTGGCTGCCTGCCTTTTTAGTAAT +
Preference number: 5 (lower is better)
Translates to: PFIWLLLPAAVLKAL*PHQGLNVAACLFSN
Trigger: ATTACTAAAAAGGCAGGCAGCCACATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGCCATATGAAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS CCA 90 bp CAGTTGTCAGGGAAAGCATCACTCATTGGCAGCCTATCAGGACGCTaGGGGATGTTCCCTGGAGGGACAGCCTCCCGTTGGCTGAGTAAT +
Preference number: 5 (lower is better)
Translates to: QLSGKASLIGSLSGR*GMFPGGTASRWLSN
Trigger: ATTACTCAGCCAACGGGAGGCTGTCCCTCCAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCCTGACAACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GTAATGGGAGCCATCAGTCCAGTTGTCAGGGAAAGCATCACTCATTaGCAGCCTATCAGGACGCTGGGGGATGTTCCCTGGAGGGACAGC +
Preference number: 5 (lower is better)
Translates to: VMGAISPVVRESITH*QPIRTLGDVPWRDS
Trigger: GCTGTCCCTCCAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCCTGACAACTGGACTGATGGCTCCCATTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCACGCACTCCATGGCTaGGCTTACCCACCAGATTTT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAHALHG*AYPPDF
Trigger: AAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGTG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp CGTCATCCAACATGGGTACTGACTGGCTCCTGGACATACTGGACATaGCATGCTCTGGTCCCAAGAACTTGTCTGGCCGCTCATGGCTTC +
Preference number: 5 (lower is better)
Translates to: RHPTWVLTGSWTYWT*HALVPRTCLAAHGF
Trigger: GAAGCCATGAGCGGCCAGACAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGATGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GGAAGCCTGCCCTGGGCCCCTGGCTGGCGAACTGAGCATTCACCATaGCATCCTCATTTACAGATGGCTGGGAAAAGGAGAACATCTGTT +
Preference number: 5 (lower is better)
Translates to: GSLPWAPGWRTEHSP*HPHLQMAGKRRTSV
Trigger: AACAGATGTTCTCCTTTTCCCAGCCATCTGTAAATGAGGATGCCATGGTGAATGCTCAGTTCGCCAGCCAGGGGCCCAGGGCAGGCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGGTTAGTACCCTTTGCTaGGTTTCTGGGTGGGCTTCT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAVSTLC*VSGWAS
Trigger: AGAAGCCCACCCAGAAACCAAGCAAAGGGTACTAAC...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCCTGTCCCAGGGGGCTaGGCAGGAGAGAGCCTTAAC +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQPVPGG*AGESLN
Trigger: GTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAAGAGAGGGTTATTGTaGGCATTTTCGCCTGCGGCT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAKRGLL*AFSPAA
Trigger: AGCCGCAGGCGAAAATGCCAACAATAACCCTCTCTT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTACCTGCCATTCCTCTaGAGGAATTGGGGATCAGTC +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAYLPFL*RNWGSV
Trigger: GACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp TCCAACATGGGTACTGACTGGCTCCTGGACATACTGGACATGCCATaGTCTGGTCCCAAGAACTTGTCTGGCCGCTCATGGCTTCCTAAG +
Preference number: 5 (lower is better)
Translates to: SNMGTDWLLDILDMP*SGPKNLSGRSWLPK
Trigger: CTTAGGAAGCCATGAGCGGCCAGACAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp GACGGGGTCCTGTCTAACCTTCTAGCTTCTATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGCATTTTGCCACAGCTCTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: DGVLSNLLASICLSS*CLQSAGILPQLSSP
Trigger: GGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACATATAGAAGCTAGAAGGTTAGACAGGACCCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200137.5
CDS GCA 90 bp CTGCCTGCCCTGTCTAACCTTCTAGCTTCTATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGCATTTTGCCACAGCTCTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: LPALSNLLASICLSS*CLQSAGILPQLSSP
Trigger: GGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACATATAGAAGCTAGAAGGTTAGACAGGGCAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199890.5
ENSMUST00000238317.3
CDS GCA 90 bp GGTCATCTCCAAGCACTGCAACTCCTCTTCAGGCCTCTTCCGAAGTaGTGCACGAGCCTCCTTACAAGGACTTCTCTGATATTGTGGGGG +
Preference number: 5 (lower is better)
Translates to: GHLQALQLLFRPLPK*CTSLLTRTSLILWG
Trigger: CCCCCACAATATCAGAGAAGTCCTTGTAAGGAGGCTCGTGCAGCACTTCGGAAGAGGCCTGAAGAGGAGTTGCAGTGCTTGGAGATGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS CCA 90 bp TCTGGTCCAATTCTGCCAGGGATTGGAAGGAGGCACTTCTGTTTCTaGTGTGTGTCTGTGTGTGGACTGCTCCAGTTCCAGGGGAACACC +
Preference number: 5 (lower is better)
Translates to: SGPILPGIGRRHFCF*CVSVCGLLQFQGNT
Trigger: GGTGTTCCCCTGGAACTGGAGCAGTCCACACACAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCATAGACGCTTTTTGTaGGGGTGGGCCTTTACTACT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAHRRFL*GWAFTT
Trigger: AGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCCCTTGTCAGAAGGTTaGAAAGGATTTCCTTGCCCA +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAPLSEG*KGFPCP
Trigger: TGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp TCTGGATGGGCAATGGCGATTGGAACTGCTGAATGGTCACTTTGTTaGTGTTCCCTTCATATGGCTGCTGCTCCCGGCTGCGGTGCTGAA +
Preference number: 5 (lower is better)
Translates to: SGWAMAIGTAEWSLC*CSLHMAAAPGCGAE
Trigger: TTCAGCACCGCAGCCGGGAGCAGCAGCCATATGAAGGGAACATCAACAAAGTGACCATTCAGCAGTTCCAATCGCCATTGCCCATCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp TCTCGTCAACCGCTAATGTTCGAAGGCTGTGCAGGTAACCAATGGTaGGAGGGAGGGACTCCAGCTCGTTGCAGCTGCAGTCAAATTCTT +
Preference number: 5 (lower is better)
Translates to: SRQPLMFEGCAGNQW*EGGTPARCSCSQIL
Trigger: AAGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGCACAGCCTTCGAACATTAGCGGTTGACGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp AGGGATTGGAAGGAGGCACTTCTGTTTCTGGTGTGTGTCTGTGTGTaGACTGCTCCAGTTCCAGGGGAACACCGACAATCCTTTCTTGCC +
Preference number: 5 (lower is better)
Translates to: RDWKEALLFLVCVCV*TAPVPGEHRQSFLA
Trigger: GGCAAGAAAGGATTGTCGGTGTTCCCCTGGAACTGGAGCAGTCCACACACAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTTTCAGCAATCCTATaGAGTCAGGCAGCTGTTGCA +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAFSAIL*SQAAVA
Trigger: TGCAACAGCTGCCTGACTCAATAGGATTGCTGAAAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCTGTCCCAGGGGGCTaGGCAGGAGAGAGCCTTAAC +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPVPGG*AGESLN
Trigger: GTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGACAGCCTGGCAGGTaGGAGAGTAATCCCACGCTG +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQRQPGR*ESNPTL
Trigger: CAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCTTTTCTTTCACAGTTaGCTCCGTGTTAGCTGTTGG +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCALFFHS*LRVSCW
Trigger: CCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAGCCTCTCTGTGCTTTaGCTAATTGCGATAACACCT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASLSVL*LIAITP
Trigger: AGGTGTTATCGCAATTAGCAAAAGCACAGAGAGGCT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTTTGAAAGGATTTCCTaGCCCACTAATTCCACCGCT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAFERIS*PTNSTA
Trigger: AGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp ATCTTCGTACCTGCCATTCCTCTTGAGGAATTGGGGATCAGTCATTaGAATGCTGCTCTGGCCTTCCAGCCCACCCCTATAGGTTGCTCG +
Preference number: 5 (lower is better)
Translates to: IFVPAIPLEELGISH*NAALAFQPTPIGCS
Trigger: CGAGCAACCTATAGGGGTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTACGAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp GCCTGTGATGAGGGGATCTGGATGGGCAATGGCGATTGGAACTGCTaGATGGTCACTTTGTTGATGTTCCCTTCATATGGCTGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: ACDEGIWMGNGDWNC*MVTLLMFPSYGCCS
Trigger: GGAGCAGCAGCCATATGAAGGGAACATCAACAAAGTGACCATTCAGCAGTTCCAATCGCCATTGCCCATCCAGATCCCCTCATCACAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp CTGTTACCCCACAAAGAGTTATGGACGGCATCTTTAGCTGTTGCCTaGAAGGACCCCACTTTCATCCGGGTGTTAGAGGATGCCGAGGAA +
Preference number: 5 (lower is better)
Translates to: LLPHKELWTASLAVA*KDPTFIRVLEDAEE
Trigger: TTCCTCGGCATCCTCTAACACCCGGATGAAAGTGGGGTCCTTGCAGGCAACAGCTAAAGATGCCGTCCATAACTCTTTGTGGGGTAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp GCAGCATTCCTGTCTAACCTTCTAGCTTCTATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGCATTTTGCCACAGCTCTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: AAFLSNLLASICLSS*CLQSAGILPQLSSP
Trigger: GGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACATATAGAAGCTAGAAGGTTAGACAGGAATGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106044.6
ENSMUST00000200196.5
CDS GCA 90 bp CATCTCCAAGCACTGCAACTCCTCTTCAGGCCTCTTCCGAAGTGCTaGACGAGCCTCCTTACAAGGACTTCTCTGATATTGTGGGGGATT +
Preference number: 5 (lower is better)
Translates to: HLQALQLLFRPLPKC*TSLLTRTSLILWGI
Trigger: AATCCCCCACAATATCAGAGAAGTCCTTGTAAGGAGGCTCGTGCAGCACTTCGGAAGAGGCCTGAAGAGGAGTTGCAGTGCTTGGAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS CCA 90 bp CTCATTTACAGATGGCTGGGAAAAGGAGAACATCTGTTCCATGGGTaGGTATCCTCTGTAGGCTCTGGGGCTGACCAGATCCTTGGCGAT +
Preference number: 5 (lower is better)
Translates to: LIYRWLGKGEHLFHG*VSSVGSGADQILGD
Trigger: ATCGCCAAGGATCTGGTCAGCCCCAGAGCCTACAGAGGATACCCACCCATGGAACAGATGTTCTCCTTTTCCCAGCCATCTGTAAATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp TATGAAGGGTGCTCATCTTCGTACCTGCCATTCCTCTTGAGGAATTaGGGATCAGTCATTGAAATGCTGCTCTGGCCTTCCAGCCCACCC +
Preference number: 5 (lower is better)
Translates to: YEGCSSSYLPFLLRN*GSVIEMLLWPSSPP
Trigger: GGGTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTACGAAGATGAGCACCCTTCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGTCGCTGAATTCATTATaGCCTAGGTCAAGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCASLNSL*PRSSLS
Trigger: GGAAAGACTTGACCTAGGCAATAATGAATTCAGCGA...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCTGTCCCAGGGGGCTaGGCAGGAGAGAGCCTTAAC +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPVPGG*AGESLN
Trigger: GTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGACAGCCTGGCAGGTaGGAGAGTAATCCCACGCTG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRQPGR*ESNPTL
Trigger: CAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGGGCTGACCAGATCCTaGGCGATGTTTTTACTGGGC +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQGLTRS*AMFLLG
Trigger: GCCCAGTAAAAACATCGCCAAGGATCTGGTCAGCCC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGCAAAACTGTGTCCATTaGCCTGAAGGATTTTATCCC +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCAQNCVH*PEGFYP
Trigger: GGGATAAAATCCTTCAGGCAAATGGACACAGTTTTG...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp TCTGATTGGCATCCAGATAGAGCTCTTCTAGTGTGCGTTCGAAGTTaGAGACCTCCTTGGGCACCTGTTGCAGGCTGCAGTGGGAGTAAT +
Preference number: 5 (lower is better)
Translates to: SDWHPDRALLVCVRS*RPPWAPVAGCSGSN
Trigger: ATTACTCCCACTGCAGCCTGCAACAGGTGCCCAAGGAGGTCTTCAACTTCGAACGCACACTAGAAGAGCTCTATCTGGATGCCAATCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp TTAGGTTTATTTCAACCTGTCTGCCACTTAGAGAGGGAAGAGTGGTaGACTGTGCTGCCACTGGCAATGGAGCACACATGCTCCTCTCCT +
Preference number: 5 (lower is better)
Translates to: LGLFQPVCHLEREEW*TVLPLAMEHTCSSP
Trigger: AGGAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAAGTGGCAGACAGGTTGAAATAAACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp CTACTTCCATACATGAGCATCTCGTCATCCAACATGGGTACTGACTaGCTCCTGGACATACTGGACATGCCATGCTCTGGTCCCAAGAAC +
Preference number: 5 (lower is better)
Translates to: LLPYMSISSSNMGTD*LLDILDMPCSGPKN
Trigger: GTTCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGATGCTCATGTATGGAAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp TGCCTTTTTAGTAATGGTGTCCGGAGGTACATCCCGCCTCCCAAGTaGGTAAGGATTCCATTGGCCACTAGGAGAGACATCTTCTTGTCC +
Preference number: 5 (lower is better)
Translates to: CLFSNGVRRYIPPPK*VRIPLATRRDIFLS
Trigger: GGACAAGAAGATGTCTCTCCTAGTGGCCAATGGAATCCTTACCCACTTGGGAGGCGGGATGTACCTCCGGACACCATTACTAAAAAGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAGAAATTCTAGCTTATaGGAGCGTAGAGACATAACG +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCARNSSL*ERRDIT
Trigger: CGTTATGTCTCTACGCTCCAATAAGCTAGAATTTCT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAACTGCGCGAATGCTGCAAGCTCTTaGAGTTTGGTGAAAGAGAAT +
Preference number: 5 (lower is better)
Translates to: TAPMHSQRLPLELIQNCANAASS*SLVKEN
Trigger: ATTCTCTTTCACCAAACTCAAAGAGCTTGCAGCATT...CGCGCAGTTCTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAACAGTCATGCGCTGTaGTCTCTGCTCCTCCCACAG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELNSHAL*SLLLPQ
Trigger: CTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTACTTCCACCGCTCCTaGTGGGTTGAAGCTTTGGTC +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQYFHRS*WVEALV
Trigger: GACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp TTGGAAGGAGGCACTTCTGTTTCTGGTGTGTGTCTGTGTGTGGACTaGTCCAGTTCCAGGGGAACACCGACAATCCTTTCTTGCCTAATT +
Preference number: 5 (lower is better)
Translates to: LEGGTSVSGVCLCVD*SSSRGTPTILSCLI
Trigger: AATTAGGCAAGAAAGGATTGTCGGTGTTCCCCTGGAACTGGAGCAGTCCACACACAGACACACACCAGAAACAGAAGTGCCTCCTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GTTTTAGGTTTATTTCAACCTGTCTGCCACTTAGAGAGGGAAGAGTaGTGGACTGTGCTGCCACTGGCAATGGAGCACACATGCTCCTCT +
Preference number: 5 (lower is better)
Translates to: VLGLFQPVCHLEREE*WTVLPLAMEHTCSS
Trigger: AGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAAGTGGCAGACAGGTTGAAATAAACCTAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCCAATGAGCTTCCGTTaGGTGGTCATCTCCAAGCAC +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELPMSFR*VVISKH
Trigger: GTGCTTGGAGATGACCACCAAACGGAAGCTCATTGG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGGGACTCCAGCTCGTaGCAGCTGCAGTCAAATTCT +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRDSSS*QLQSNS
Trigger: AGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCCT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAACAGTCATGCGCTGTaGTCTCTGCTCCTCCCACAG +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWNSHAL*SLLLPQ
Trigger: CTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGGGGACGGGCATATCTaGGATCTGCTGATCACACCT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWGDGHI*DLLITP
Trigger: AGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGCAATTCTGCCAGGGATaGGAAGGAGGCACTTCTGTT +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQQFCQG*EGGTSV
Trigger: AACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTG...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTGGGCGGCAGTGGATTaGAGAAAAGACATTACCGAG +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQWAAVD*RKDITE
Trigger: CTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTGGGTAAGGATTCCATaGGCCACTAGGAGAGACATC +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQWVRIP*ATRRDI
Trigger: GATGTCTCTCCTAGTGGCCAATGGAATCCTTACCCA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGGACTTCTCTGATATaGTGGGGGATTCCTTCCCCG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRTSLI*WGIPSP
Trigger: CGGGGAAGGAATCCCCCACAATATCAGAGAAGTCCT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS TCA 90 bp TTTACTACTTCCATACATGAGCATCTCGTCATCCAACATGGGTACTaGCTGGCTCCTGGACATACTGGACATGCCATGCTCTGGTCCCAA +
Preference number: 5 (lower is better)
Translates to: FTTSIHEHLVIQHGY*LAPGHTGHAMLWSQ
Trigger: TTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGATGCTCATGTATGGAAGTAGTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp AAAGCAGTCCTATCTTCAAATGGACTGGGAGTTCTGGTCCAATTCTaGCAGGGATTGGAAGGAGGCACTTCTGTTTCTGGTGTGTGTCTG +
Preference number: 5 (lower is better)
Translates to: KAVLSSNGLGVLVQF*QGLEGGTSVSGVCL
Trigger: CAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATAGGACTGCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp TATCTTCAAATGGACTGGGAGTTCTGGTCCAATTCTGCCAGGGATTaGAAGGAGGCACTTCTGTTTCTGGTGTGTGTCTGTGTGTGGACT +
Preference number: 5 (lower is better)
Translates to: YLQMDWEFWSNSARD*KEALLFLVCVCVWT
Trigger: AGTCCACACACAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTCCAGCTGGGCTAACTaGTGCATTGACTTTGGTAGA +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSSWAN*CIDFGR
Trigger: TCTACCAAAGTCAATGCACAAGTTAGCCCAGCTGGA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGGGACTCCAGCTCGTaGCAGCTGCAGTCAAATTCT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWRDSSS*QLQSNS
Trigger: AGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAAGACAGCCTGGCAGGTaGGAGAGTAATCCCACGCTG +
Preference number: 5 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPRQPGR*ESNPTL
Trigger: CAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCT...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGGGACGGGCATATCTaGGATCTGCTGATCACACCT +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGDGHI*DLLITP
Trigger: AGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCACGCACTCCATGGCTaGGCTTACCCACCAGATTTT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWHALHG*AYPPDF
Trigger: AAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGGGGGCCACCGGCCACTaGTGTTCAAACTTTTCTTTC +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWGATGH*CSNFSF
Trigger: GAAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCC...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCAATTCTGCCAGGGATaGGAAGGAGGCACTTCTGTT +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELQFCQG*EGGTSV
Trigger: AACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTGGGCGGCAGTGGATTaGAGAAAAGACATTACCGAG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELWAAVD*RKDITE
Trigger: CTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGATTGGGGATCAGTCATaGAAATGCTGCTCTGGCCTT +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQIGDQS*KCCSGL
Trigger: AAGGCCAGAGCAGCATTTCAATGACTGATCCCCAAT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTACCTGCCATTCCTCTaGAGGAATTGGGGATCAGTC +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELYLPFL*RNWGSV
Trigger: GACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp CTTCTTGATATGAAGGGTGCTCATCTTCGTACCTGCCATTCCTCTTaGGGAATTGGGGATCAGTCATTGAAATGCTGCTCTGGCCTTCCA +
Preference number: 5 (lower is better)
Translates to: LLDMKGAHLRTCHSS*GIGDQSLKCCSGLP
Trigger: TGGAAGGCCAGAGCAGCATTTCAATGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTACGAAGATGAGCACCCTTCATATCAAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp TTTGGGGCCACCGGCCACTTGTGTTCAAACTTTTCTTTCACAGTTTaGTCCGTGTTAGCTGTTGGATTTGAGTTCTCAACACGCACTCCA +
Preference number: 5 (lower is better)
Translates to: FGATGHLCSNFSFTV*SVLAVGFEFSTRTP
Trigger: TGGAGTGCGTGTTGAGAACTCAAATCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp AGGGGGTGGAATCCTCTTCTCGGCTTTTACTTCCACCGCTCCTTGTaGGTTGAAGCTTTGGTCAAACTGATAGACCTTCTTAGTCATAGA +
Preference number: 5 (lower is better)
Translates to: RGWNPLLGFYFHRSL*VEALVKLIDLLSHR
Trigger: TCTATGACTAAGAAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTAAAAGCCGAGAAGAGGATTCCACCCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCCAGCTGGGCTAACTaGTGCATTGACTTTGGTAGA +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSSWAN*CIDFGR
Trigger: TCTACCAAAGTCAATGCACAAGTTAGCCCAGCTGGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAACAGTCATGCGCTGTaGTCTCTGCTCCTCCCACAG +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRNSHAL*SLLLPQ
Trigger: CTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGGGCCACCGGCCACTaGTGTTCAAACTTTTCTTTC +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGATGH*CSNFSF
Trigger: GAAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCTTAAGAGAGGGTTATaGTTGGCATTTTCGCCTGCG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELLKRGL*LAFSPA
Trigger: CGCAGGCGAAAATGCCAACAATAACCCTCTCTTAAG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCAATTCTGCCAGGGATaGGAAGGAGGCACTTCTGTT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWQFCQG*EGGTSV
Trigger: AACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATACTTCCACCGCTCCTaGTGGGTTGAAGCTTTGGTC +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPYFHRS*WVEALV
Trigger: GACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGGCTGACCAGATCCTaGGCGATGTTTTTACTGGGC +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGLTRS*AMFLLG
Trigger: GCCCAGTAAAAACATCGCCAAGGATCTGGTCAGCCC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAGGGCTGACCAGATCCTaGGCGATGTTTTTACTGGGC +
Preference number: 5 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAGLTRS*AMFLLG
Trigger: GCCCAGTAAAAACATCGCCAAGGATCTGGTCAGCCC...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGGGCTGACCAGATCCTaGGCGATGTTTTTACTGGGC +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVGLTRS*AMFLLG
Trigger: GCCCAGTAAAAACATCGCCAAGGATCTGGTCAGCCC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTCACAGGGGTGGGCCTaGTCTTTATATCACTGTTAT +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSQGWA*SLYHCY
Trigger: ATAACAGTGATATAAAGACAAGGCCCACCCCTGTGA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGTTTGAAAGGATTTCCTaGCCCACTAATTCCACCGCT +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQFERIS*PTNSTA
Trigger: AGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAA...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 90 bp GTTTTTAGCAGGAAAACTTCCCGCCTGCGCTTTCACTTCTTGATATaGAGGGTGCTCATCTTCGTACCTGCCATTCCTCTTGAGGAATTG +
Preference number: 5 (lower is better)
Translates to: VFSRKTSRLRFHFLI*RVLIFVPAIPLEEL
Trigger: CAATTCCTCAAGAGGAATGGCAGGTACGAAGATGAGCACCCTTCATATCAAGAAGTGAAAGCGCAGGCGGGAAGTTTTCCTGCTAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCACCAATGAGCTTCCGTTaGGTGGTCATCTCCAAGCAC +
Preference number: 5 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPPMSFR*VVISKH
Trigger: GTGCTTGGAGATGACCACCAAACGGAAGCTCATTGG...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTGGAGGTTGGCAGACTaGAGAGGTCATTATCAGGAA +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWWRLAD*RGHYQE
Trigger: TTCCTGATAATGACCTCTCAAGTCTGCCAACCTCCA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGCTGGGCTAACTaGTGCATTGACTTTGGTAGA +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSSWAN*CIDFGR
Trigger: TCTACCAAAGTCAATGCACAAGTTAGCCCAGCTGGA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGCACTTGCAATGCATaGTTATCCATCCACAGCTCC +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSTCNA*LSIHSS
Trigger: GGAGCTGTGGATGGATAACAATGCATTGCAAGTGCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGAGCTGTTGCAACATATaGGATGATAGTAAGAGGTCC +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQSCCNI*DDSKRS
Trigger: GGACCTCTTACTATCATCCAATATGTTGCAACAGCT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAGGGACTCCAGCTCGTaGCAGCTGCAGTCAAATTCT +
Preference number: 5 (lower is better)
Translates to: TGATVYSQHNPRKQNIKARDSSS*QLQSNS
Trigger: AGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCCT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGGCAAGCTCTTTGAGTTaGGTGAAAGAGAATGGCAAA +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQASSLS*VKENGK
Trigger: TTTGCCATTCTCTTTCACCAAACTCAAAGAGCTTGC...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGGGGACGGGCATATCTaGGATCTGCTGATCACACCT +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIGDGHI*DLLITP
Trigger: AGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACACGCACTCCATGGCTaGGCTTACCCACCAGATTTT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRHALHG*AYPPDF
Trigger: AAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGTG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGCTTTTCTTTCACAGTTaGCTCCGTGTTAGCTGTTGG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELLFFHS*LRVSCW
Trigger: CCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAG...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAGGGGCCACCGGCCACTaGTGTTCAAACTTTTCTTTC +
Preference number: 5 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPGATGH*CSNFSF
Trigger: GAAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCC...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCATAGACGCTTTTTGTaGGGGTGGGCCTTTACTACT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWHRRFL*GWAFTT
Trigger: AGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCACAGGGGTGGGCCTaGTCTTTATATCACTGTTAT +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSQGWA*SLYHCY
Trigger: ATAACAGTGATATAAAGACAAGGCCCACCCCTGTGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCCTTGTCAGAAGGTTaGAAAGGATTTCCTTGCCCA +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPLSEG*KGFPCP
Trigger: TGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp TATATCTTTCATGAGCGGGGAAAGCCTCTCTGTGCTTTTGCTAATTaGGATAACACCTTTAGACGAATCTGGGCGGCAGTGGATTTGAGA +
Preference number: 5 (lower is better)
Translates to: YIFHERGKPLCAFAN*DNTFRRIWAAVDLR
Trigger: TCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGTGTTATCGCAATTAGCAAAAGCACAGAGAGGCTTTCCCCGCTCATGAAAGATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp CCTCTCTGTGCTTTTGCTAATTGCGATAACACCTTTAGACGAATCTaGGCGGCAGTGGATTTGAGAAAAGACATTACCGAGACTCCTGTT +
Preference number: 5 (lower is better)
Translates to: PLCAFANCDNTFRRI*AAVDLRKDITETPV
Trigger: AACAGGAGTCTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGTGTTATCGCAATTAGCAAAAGCACAGAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACCAATGAGCTTCCGTTaGGTGGTCATCTCCAAGCAC +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIPMSFR*VVISKH
Trigger: GTGCTTGGAGATGACCACCAAACGGAAGCTCATTGG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGCACTTGCAATGCATaGTTATCCATCCACAGCTCC +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSTCNA*LSIHSS
Trigger: GGAGCTGTGGATGGATAACAATGCATTGCAAGTGCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGCAAGCTCTTTGAGTTaGGTGAAAGAGAATGGCAAA +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELASSLS*VKENGK
Trigger: TTTGCCATTCTCTTTCACCAAACTCAAAGAGCTTGC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGTTAGTACCCTTTGCTaGGTTTCTGGGTGGGCTTCT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRVSTLC*VSGWAS
Trigger: AGAAGCCCACCCAGAAACCAAGCAAAGGGTACTAAC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCCTCCGGGTAAGGAGTaGGATATCGTTTTAGGTTTA +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWPPGKE*DIVLGL
Trigger: TAAACCTAAAACGATATCCAACTCCTTACCCGGAGG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACACGCACTCCATGGCTaGGCTTACCCACCAGATTTT +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIHALHG*AYPPDF
Trigger: AAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGTG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGCTTTTCTTTCACAGTTaGCTCCGTGTTAGCTGTTGG +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWLFFHS*LRVSCW
Trigger: CCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAG...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGGGGCCACCGGCCACTaGTGTTCAAACTTTTCTTTC +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIGATGH*CSNFSF
Trigger: GAAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAAGAGAGGGTTATTGTaGGCATTTTCGCCTGCGGCT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRKRGLL*AFSPAA
Trigger: AGCCGCAGGCGAAAATGCCAACAATAACCCTCTCTT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAGGTACGCTTCTAGCCTaGGAACTTAAGAGAGGGTTA +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPGTLLA*ELKRGL
Trigger: TAACCCTCTCTTAAGTTCCAAGGCTAGAAGCGTACC...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCACAATTCTGCCAGGGATaGGAAGGAGGCACTTCTGTT +
Preference number: 5 (lower is better)
Translates to: TGATVYSQHNPRKQNIKAQFCQG*EGGTSV
Trigger: AACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTG...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATGGGCGGCAGTGGATTaGAGAAAAGACATTACCGAG +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRWAAVD*RKDITE
Trigger: CTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATACTTCCACCGCTCCTaGTGGGTTGAAGCTTTGGTC +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIYFHRS*WVEALV
Trigger: GACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATACCTGCCATTCCTCTaGAGGAATTGGGGATCAGTC +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRYLPFL*RNWGSV
Trigger: GACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCATTGTCTAAAATGTaGCTTTGCTGGGACGGGGTT +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPLSKM*LCWDGV
Trigger: AACCCCGTCCCAGCAAAGCAACATTTTAGACAATGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200196.5
CDS TCA 90 bp TTCAAACTTTTCTTTCACAGTTTGCTCCGTGTTAGCTGTTGGATTTaGGTTCTCAACACGCACTCCATGGCTTGGCTTACCCACCAGATT +
Preference number: 5 (lower is better)
Translates to: FKLFFHSLLRVSCWI*VLNTHSMAWLTHQI
Trigger: AATCTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGAGAACTCAAATCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAGTTTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp CAGAGGGATAAGGGCCTTGGACTGATTGTCAGAAAGCCACAATGCTaGAAGCTCTTTGAGTTTGGTGAAAGAGAATGGCAAATTCTTCAA +
Preference number: 5 (lower is better)
Translates to: QRDKGLGLIVRKPQC*KLFEFGEREWQILQ
Trigger: TTGAAGAATTTGCCATTCTCTTTCACCAAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTATCCCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp TTGCAGAGGGATAAGGGCCTTGGACTGATTGTCAGAAAGCCACAATaGTGCAAGCTCTTTGAGTTTGGTGAAAGAGAATGGCAAATTCTT +
Preference number: 5 (lower is better)
Translates to: LQRDKGLGLIVRKPQ*CKLFEFGEREWQIL
Trigger: AAGAATTTGCCATTCTCTTTCACCAAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTATCCCTCTGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp TTGTTTCTAATTTGGAAGGAAAAGCAGTCCTATCTTCAAATGGACTaGGAGTTCTGGTCCAATTCTGCCAGGGATTGGAAGGAGGCACTT +
Preference number: 5 (lower is better)
Translates to: LFLIWKEKQSYLQMD*EFWSNSARDWKEAL
Trigger: AAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATAGGACTGCTTTTCCTTCCAAATTAGAAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATGGAGGTTGGCAGACTaGAGAGGTCATTATCAGGAA +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRWRLAD*RGHYQE
Trigger: TTCCTGATAATGACCTCTCAAGTCTGCCAACCTCCA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGATACAGACTTGTGCATTGACTTaGGTAGAGTTTTCAAGTGAT +
Preference number: 5 (lower is better)
Translates to: RNKTAPMHSQRLPLELIQTCALT*VEFSSD
Trigger: ATCACTTGAAAACTCTACCAAAGTCAATGCACAAGT...CTGTATCAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCGCTGAATTCATTATaGCCTAGGTCAAGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSLNSL*PRSSLS
Trigger: GGAAAGACTTGACCTAGGCAATAATGAATTCAGCGA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGCACTTGCAATGCATaGTTATCCATCCACAGCTCC +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSTCNA*LSIHSS
Trigger: GGAGCTGTGGATGGATAACAATGCATTGCAAGTGCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGCTGTTGCAACATATaGGATGATAGTAAGAGGTCC +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWSCCNI*DDSKRS
Trigger: GGACCTCTTACTATCATCCAATATGTTGCAACAGCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGAGAAATTCTAGCTTATaGGAGCGTAGAGACATAACG +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELRNSSL*ERRDIT
Trigger: CGTTATGTCTCTACGCTCCAATAAGCTAGAATTTCT...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTTAGTACCCTTTGCTaGGTTTCTGGGTGGGCTTCT +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVSTLC*VSGWAS
Trigger: AGAAGCCCACCCAGAAACCAAGCAAAGGGTACTAAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACCTCCGGGTAAGGAGTaGGATATCGTTTTAGGTTTA +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPPPGKE*DIVLGL
Trigger: TAAACCTAAAACGATATCCAACTCCTTACCCGGAGG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGTCAGTTGATTCTTTTTaGTCCTTCCCTAGCAGAACA +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELSVDSF*SFPSRT
Trigger: TGTTCTGCTAGGGAAGGACAAAAAAGAATCAACTGA...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACTTAAGAGAGGGTTATaGTTGGCATTTTCGCCTGCG +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRLKRGL*LAFSPA
Trigger: CGCAGGCGAAAATGCCAACAATAACCCTCTCTTAAG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAGGTACGCTTCTAGCCTaGGAACTTAAGAGAGGGTTA +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRGTLLA*ELKRGL
Trigger: TAACCCTCTCTTAAGTTCCAAGGCTAGAAGCGTACC...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATGGGCGGCAGTGGATTaGAGAAAAGACATTACCGAG +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIWAAVD*RKDITE
Trigger: CTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGCCTCTCTGTGCTTTaGCTAATTGCGATAACACCT +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSLSVL*LIAITP
Trigger: AGGTGTTATCGCAATTAGCAAAAGCACAGAGAGGCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACATAGACGCTTTTTGTaGGGGTGGGCCTTTACTACT +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVHRRFL*GWAFTT
Trigger: AGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTTGTGGGTTGAAGCTTaGGTCAAACTGATAGACCTT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWLWVEA*VKLIDL
Trigger: AAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAA...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAATTGGGGATCAGTCATaGAAATGCTGCTCTGGCCTT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRIGDQS*KCCSGL
Trigger: AAGGCCAGAGCAGCATTTCAATGACTGATCCCCAAT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATACCTGCCATTCCTCTaGAGGAATTGGGGATCAGTC +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIYLPFL*RNWGSV
Trigger: GACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCATTTGAAAGGATTTCCTaGCCCACTAATTCCACCGCT +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPFERIS*PTNSTA
Trigger: AGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAA...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACCCTTGTCAGAAGGTTaGAAAGGATTTCCTTGCCCA +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVPLSEG*KGFPCP
Trigger: TGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGACCCTTGTCAGAAGGTTaGAAAGGATTTCCTTGCCCA +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRPLSEG*KGFPCP
Trigger: TGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGG...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACAGAAATAAAACTGCACCAATGCACAGCCAGAGGCTGCCGCTGGAACTGGTAACAAAGATACCCTaGTCAGAAGGTTTGAAAGGA +
Preference number: 5 (lower is better)
Translates to: KNRNKTAPMHSQRLPLELVTKIP*SEGLKG
Trigger: TCCTTTCAAACCTTCTGACAAGGGTATCTTTGTTAC...CAGTTCCAGCGGCAGCCTCTGGCTGTGCATTGGTGCAGTTTTATTTCTGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACCATTGTCTAAAATGTaGCTTTGCTGGGACGGGGTC +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIPLSKM*LCWDGV
Trigger: GACCCCGTCCCAGCAAAGCAACATTTTAGACAATGG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200137.5
CDS TCA 90 bp CTCTCCCTTCACAGGGGTGGGCCTTGTCTTTATATCACTGTTATCTaGTGTCTTGTCACCATAGTTACCCAAGTTATAGTCAGATGGTAT +
Preference number: 5 (lower is better)
Translates to: LSLHRGGPCLYITVI*CLVTIVTQVIVRWY
Trigger: ATACCATCTGACTATAACTTGGGTAACTATGGTGACAAGACATCAGATAACAGTGATATAAAGACAAGGCCCACCCCTGTGAAGGGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp CAATTTGACAAGTCTTCCAAAATTAGCTGGAAGAAATTCGAGGAATaGGTCATTCAGGTAGAGCTGGGTCAGGTTAAGAAGCTGCGTGAA +
Preference number: 5 (lower is better)
Translates to: QFDKSSKISWKKFEE*VIQVELGQVKKLRE
Trigger: TTCACGCAGCTTCTTAACCTGACCCAGCTCTACCTGAATGACGCATTCCTCGAATTTCTTCCAGCTAATTTTGGAAGACTTGTCAAATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 90 bp CTAGTAACAAAGATACCCTTGTCAGAAGGTTTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTGATACTAAATCCAAGCCCAGGATTC +
Preference number: 5 (lower is better)
Translates to: LVTKIPLSEGLKGFP*PLIPPLILNPSPGF
Trigger: GAATCCTGGGCTTGGATTTAGTATCAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGGTATCTTTGTTACTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp GTCAAACTGATAGACCTTCTTAGTCATAGACGCTTTTTGTTGGGGTaGGCCTTTACTACTTCCATACATGAGCATCTCGTCATCCAACAT +
Preference number: 5 (lower is better)
Translates to: VKLIDLLSHRRFLLG*AFTTSIHEHLVIQH
Trigger: ATGTTGGATGACGAGATGCTCATGTATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATGACTAAGAAGGTCTATCAGTTTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATCCAGCTGGGCTAACTaGTGCATTGACTTTGGTAGA +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISSWAN*CIDFGR
Trigger: TCTACCAAAGTCAATGCACAAGTTAGCCCAGCTGGA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCAAGCTGTTGCAACATATaGGATGATAGTAAGAGGTCC +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPSCCNI*DDSKRS
Trigger: GGACCTCTTACTATCATCCAATATGTTGCAACAGCT...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTTTCAGCAATCCTATaGAGTCAGGCAGCTGTTGCA +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRFSAIL*SQAAVA
Trigger: TGCAACAGCTGCCTGACTCAATAGGATTGCTGAAAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAGGGACTCCAGCTCGTaGCAGCTGCAGTCAAATTCT +
Preference number: 5 (lower is better)
Translates to: KNPQELRLMISVDHSSEKRDSSS*QLQSNS
Trigger: AGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCCT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAGAAATTCTAGCTTATaGGAGCGTAGAGACATAACG +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWRNSSL*ERRDIT
Trigger: CGTTATGTCTCTACGCTCCAATAAGCTAGAATTTCT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGGTGGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGAATGCTGCAAGCTCTTaGAGTTTGGTGAAAGAGAAT +
Preference number: 5 (lower is better)
Translates to: GWKANIHYYTPGTDVCHWNAASS*SLVKEN
Trigger: ATTCTCTTTCACCAAACTCAAAGAGCTTGCAGCATT...CCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCCACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACTTTTCTTTCACAGTTaGCTCCGTGTTAGCTGTTGG +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVLFFHS*LRVSCW
Trigger: CCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACTTAAGAGAGGGTTATaGTTGGCATTTTCGCCTGCG +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCILKRGL*LAFSPA
Trigger: CGCAGGCGAAAATGCCAACAATAACCCTCTCTTAAG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGCCTCTCTGTGCTTTaGCTAATTGCGATAACACCT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSLSVL*LIAITP
Trigger: AGGTGTTATCGCAATTAGCAAAAGCACAGAGAGGCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATACATAGACGCTTTTTGTaGGGGTGGGCCTTTACTACT +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIHRRFL*GWAFTT
Trigger: AGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATG...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAATTGGGGATCAGTCATaGAAATGCTGCTCTGGCCTT +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIIGDQS*KCCSGL
Trigger: AAGGCCAGAGCAGCATTTCAATGACTGATCCCCAAT...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATCACAGGGGTGGGCCTaGTCTTTATATCACTGTTAT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSQGWA*SLYHCY
Trigger: ATAACAGTGATATAAAGACAAGGCCCACCCCTGTGA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCACAGGGGTGGGCCTaGTCTTTATATCACTGTTAT +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVSQGWA*SLYHCY
Trigger: ATAACAGTGATATAAAGACAAGGCCCACCCCTGTGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGAAGGCTAACATACACTATTATACACCTGGCACTGATGTTTGCCATTGGTCCACAAAACTGTGTCCATTaGCCTGAAGGATTTTATCCC +
Preference number: 5 (lower is better)
Translates to: GRLTYTIIHLALMFAIGPQNCVH*PEGFYP
Trigger: GGGATAAAATCCTTCAGGCAAATGGACACAGTTTTG...TGGACCAATGGCAAACATCAGTGCCAGGTGTATAATAGTGTATGTTAGCCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 90 bp ACTTTTTCAGCAATCCTATTGAGTCAGGCAGCTGTTGCAACATATTaGATGATAGTAAGAGGTCCTCGAGGGCTTCACATCCAGAAATAT +
Preference number: 5 (lower is better)
Translates to: TFSAILLSQAAVATY*MIVRGPRGLHIQKY
Trigger: ATATTTCTGGATGTGAAGCCCTCGAGGACCTCTTACTATCATCCAATATGTTGCAACAGCTGCCTGACTCAATAGGATTGCTGAAAAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCGCTGAATTCATTATaGCCTAGGTCAAGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVSLNSL*PRSSLS
Trigger: GGAAAGACTTGACCTAGGCAATAATGAATTCAGCGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGCTGTTGCAACATATaGGATGATAGTAAGAGGTCC +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSCCNI*DDSKRS
Trigger: GGACCTCTTACTATCATCCAATATGTTGCAACAGCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATTTTCAGCAATCCTATaGAGTCAGGCAGCTGTTGCA +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIFSAIL*SQAAVA
Trigger: TGCAACAGCTGCCTGACTCAATAGGATTGCTGAAAA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAGCAAGCTCTTTGAGTTaGGTGAAAGAGAATGGCAAA +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVASSLS*VKENGK
Trigger: TTTGCCATTCTCTTTCACCAAACTCAAAGAGCTTGC...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAAAGAGAGGGTTATTGTaGGCATTTTCGCCTGCGGCT +
Preference number: 5 (lower is better)
Translates to: KNPQELRLMISVDHSSEKKRGLL*AFSPAA
Trigger: AGCCGCAGGCGAAAATGCCAACAATAACCCTCTCTT...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCATTGTGGGTTGAAGCTTaGGTCAAACTGATAGACCTT +
Preference number: 5 (lower is better)
Translates to: TGATVYSQHNPRKQNIKALWVEA*VKLIDL
Trigger: AAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAA...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATTGTGGGTTGAAGCTTaGGTCAAACTGATAGACCTT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRLWVEA*VKLIDL
Trigger: AAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATTGTGGGTTGAAGCTTaGGTCAAACTGATAGACCTT +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVLWVEA*VKLIDL
Trigger: AAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTACAAAACTGTGTCCATTaGCCTGAAGGATTTTATCCC +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVQNCVH*PEGFYP
Trigger: GGGATAAAATCCTTCAGGCAAATGGACACAGTTTTG...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAAGAAATTCTAGCTTATaGGAGCGTAGAGACATAACG +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRRNSSL*ERRDIT
Trigger: CGTTATGTCTCTACGCTCCAATAAGCTAGAATTTCT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp ACAGGGGCCACAGTTTATAGTCAACATAACCCGAGGAAACAGAACATTAAAGCAAATGCTGCAAGCTCTTaGAGTTTGGTGAAAGAGAAT +
Preference number: 5 (lower is better)
Translates to: TGATVYSQHNPRKQNIKANAASS*SLVKEN
Trigger: ATTCTCTTTCACCAAACTCAAAGAGCTTGCAGCATT...TGCTTTAATGTTCTGTTTCCTCGGGTTATGTTGACTATAAACTGTGGCCCCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATCAGTTGATTCTTTTTaGTCCTTCCCTAGCAGAACA +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVSVDSF*SFPSRT
Trigger: TGTTCTGCTAGGGAAGGACAAAAAAGAATCAACTGA...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGATCAGTTGATTCTTTTTaGTCCTTCCCTAGCAGAACA +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRSVDSF*SFPSRT
Trigger: TGTTCTGCTAGGGAAGGACAAAAAAGAATCAACTGA...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGGTACGCTTCTAGCCTaGGAACTTAAGAGAGGGTTA +
Preference number: 5 (lower is better)
Translates to: KNPQELRLMISVDHSSEKGTLLA*ELKRGL
Trigger: TAACCCTCTCTTAAGTTCCAAGGCTAGAAGCGTACC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS-3UTR CAA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAATTCTGCCTGCATGCATaGCTGAAATACCTCCATAGG +
Preference number: 5 (lower is better)
Translates to: KNPQELRLMISVDHSSEKFCLHA*LKYLHR
Trigger: CCTATGGAGGTATTTCAGCAATGCATGCAGGCAGAA...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000200196.5
CDS TCA 90 bp TCCAGCTGGGCTAACTTGTGCATTGACTTTGGTAGAGTTTTCAAGTaGTTTTCTCTTAACTCCAGTATTCGCAATTTGACAAGTCTTCCA +
Preference number: 5 (lower is better)
Translates to: SSWANLCIDFGRVFK*FSLNSSIRNLTSLP
Trigger: TGGAAGACTTGTCAAATTGCGAATACTGGAGTTAAGAGAAAATCACTTGAAAACTCTACCAAAGTCAATGCACAAGTTAGCCCAGCTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGTCTACTGTGTTCTGGAAGCTCTTCAGTAGTAAAACAGCCTTTTCATGTTCCAACTTGTGCATTGACTTaGGTAGAGTTTTCAAGTGAT +
Preference number: 5 (lower is better)
Translates to: GLLCSGSSSVVKQPFHVPTCALT*VEFSSD
Trigger: ATCACTTGAAAACTCTACCAAAGTCAATGCACAAGT...TGGAACATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS-3UTR CAA 90 bp AAAGAGCTTGTGTGTGCTTCCGTGCTCCGAAATTATAGGAAATCCACTTTGAGAACTTGTGCATTGACTTaGGTAGAGTTTTCAAGTGAT +
Preference number: 5 (lower is better)
Translates to: KELVCASVLRNYRKSTLRTCALT*VEFSSD
Trigger: ATCACTTGAAAACTCTACCAAAGTCAATGCACAAGT...TCTCAAAGTGGATTTCCTATAATTTCGGAGCACGGAAGCACACACAAGCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp CTGGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTAACTTGTGCATTGACTTaGGTAGAGTTTTCAAGTGAT +
Preference number: 5 (lower is better)
Translates to: LALMFAIGPATGKICFYVTCALT*VEFSSD
Trigger: ATCACTTGAAAACTCTACCAAAGTCAATGCACAAGT...TACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATATCAGTTGATTCTTTTTaGTCCTTCCCTAGCAGAACA +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCISVDSF*SFPSRT
Trigger: TGTTCTGCTAGGGAAGGACAAAAAAGAATCAACTGA...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp GGCACTGATGTTTGCCATTGGTCCAGCAACTGGCAAAATTTGTTTCTATGTATAGTAACAAAGATACCCTaGTCAGAAGGTTTGAAAGGA +
Preference number: 5 (lower is better)
Translates to: GTDVCHWSSNWQNLFLCIVTKIP*SEGLKG
Trigger: TCCTTTCAAACCTTCTGACAAGGGTATCTTTGTTAC...TATACATAGAAACAAATTTTGCCAGTTGCTGGACCAATGGCAAACATCAGTGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS-3UTR CAA 90 bp AAAAACCCCCAGGAATTAAGATTAATGATATCAGTAGACCACAGCTCTGAGAAAGTAACAAAGATACCCTaGTCAGAAGGTTTGAAAGGA +
Preference number: 5 (lower is better)
Translates to: KNPQELRLMISVDHSSEKVTKIP*SEGLKG
Trigger: TCCTTTCAAACCTTCTGACAAGGGTATCTTTGTTAC...TTTCTCAGAGCTGTGGTCTACTGATATCATTAATCTTAATTCCTGGGGGTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS GCA 90 bp AAATTCTTCAACCTATTATCACTTAGATTTAAGACACGCAGTCTCTaGATCTGCCCAATTTCTTCAGGAAGAAATTCTAGCTTATTGGAG +
Preference number: 5 (lower is better)
Translates to: KFFNLLSLRFKTRSL*ICPISSGRNSSLLE
Trigger: CTCCAATAAGCTAGAATTTCTTCCTGAAGAAATTGGGCAGATGCAGAGACTGCGTGTCTTAAATCTAAGTGATAATAGGTTGAAGAATTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp CCAGACAGCCTGGCAGGTTGGAGAGTAATCCCACGCTaGCCCCTGTCCCAGGGGGCTTGGCAGGAGAGAGCC +
Preference number: 6 (lower is better)
Translates to: PDSLAGWRVIPR*PLSQGAWQERA
Trigger: GGCTCTCTCCTGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp TGGCTGCTGCTCCCGGCTGCGGTGCTGAAGGCTCTGTaGCCCCATCAGGGTCTGAATGTGGCTGCCTGCCCT +
Preference number: 6 (lower is better)
Translates to: WLLLPAAVLKAL*PHQGLNVAACP
Trigger: AGGGCAGGCAGCCACATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000199890.5
ENSMUST00000238317.3
CDS CCA 72 bp TGGCCAGGGAGTCAGCCCTCCTTAGGAAGCCTGCCCTaGGCCCCTGGCTGGCGAACTGAGCATTCACCATGG +
Preference number: 6 (lower is better)
Translates to: WPGSQPSLGSLP*APGWRTEHSPW
Trigger: CCATGGTGAATGCTCAGTTCGCCAGCCAGGGGCCCAGGGCAGGCTTCCTAAGGAGGGCTGACTCCCTGGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp ACACCTGGCCCATGGTGTGCAGCAATCGCCAGACAGCCTGGCAGGTaGGAGAGTAATCCCACGCTGGCCCCTGTCCCAGGGGGCTTGGCA +
Preference number: 6 (lower is better)
Translates to: TPGPWCAAIARQPGR*ESNPTLAPVPGGLA
Trigger: TGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCTGGCGATTGCTGCACACCATGGGCCAGGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp TGGCTGCTGCTCCCGGCTGCGGTGCTGAAGGCTCTGTaGCCCCATCAGGGTCTGAATGTGGCTGCCTGCCTT +
Preference number: 6 (lower is better)
Translates to: WLLLPAAVLKAL*PHQGLNVAACL
Trigger: AAGGCAGGCAGCCACATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS TCA 72 bp CTCCTCCCACAGGGTGGGGTTGAAGCTGTCGCTGTCTaGCTGGAAATCTTCGTCACCACGGGGCTGCTGGGG +
Preference number: 6 (lower is better)
Translates to: LLPQGGVEAVAV*LEIFVTTGLLG
Trigger: CCCCAGCAGCCCCGTGGTGACGAAGATTTCCAGTCAGACAGCGACAGCTTCAACCCCACCCTGTGGGAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GTTGCTCGGCCATACCTGTCACCAGGGGGCAGCTCGTaGGGCTCACTGACCCTTCTGAACATGGCCATCTCG +
Preference number: 6 (lower is better)
Translates to: VARPYLSPGGSS*GSLTLLNMAIS
Trigger: CGAGATGGCCATGTTCAGAAGGGTCAGTGAGCCCCACGAGCTGCCCCCTGGTGACAGGTATGGCCGAGCAAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp CTCCACGGAAGCAGCGGCATGGCACCAGGCGGCCAATaGGCTTCCGTTTGGTGGTCATCTCCAAGCACTGCA +
Preference number: 6 (lower is better)
Translates to: LHGSSGMAPGGQ*ASVWWSSPSTA
Trigger: TGCAGTGCTTGGAGATGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGCCATGCCGCTGCTTCCGTGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000238317.3
CDS GCA 72 bp AAACTGGCCTGGTTTGGGAGGCCCCATAACTCTCTGTaGTGTAGCTCCTGGCAGACAGCGGCCTCCTCTGGG +
Preference number: 6 (lower is better)
Translates to: KLAWFGRPHNSL*CSSWQTAASSG
Trigger: CCCAGAGGAGGCCGCTGTCTGCCAGGAGCTACAGCACAGAGAGTTATGGGGCCTCCCAAACCAGGCCAGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GCCACTGGCAATGGAGCACACATGCTCCTCTCCTGCTaGAGGCCACTTATACAACCCCATGCCAGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: ATGNGAHMLLSC*RPLIQPHASWG
Trigger: CCCCCAGCTGGCATGGGGTTGTATAAGTGGCCTCCAGCAGGAGAGGAGCATGTGTGCTCCATTGCCAGTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GGGAAAGCATCACTCATTGGCAGCCTATCAGGACGCTaGGGGATGTTCCCTGGAGGGACAGCCTCCCGTTGG +
Preference number: 6 (lower is better)
Translates to: GKASLIGSLSGR*GMFPGGTASRW
Trigger: CCAACGGGAGGCTGTCCCTCCAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp CCACGGAAGCAGCGGCATGGCACCAGGCGGCCAATGAGCTTCCGTTaGGTGGTCATCTCCAAGCACTGCAACTCCTCTTCAGGCCTCTTC +
Preference number: 6 (lower is better)
Translates to: PRKQRHGTRRPMSFR*VVISKHCNSSSGLF
Trigger: GAAGAGGCCTGAAGAGGAGTTGCAGTGCTTGGAGATGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGCCATGCCGCTGCTTCCGTGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS TCA 72 bp GGGTCACTCTGGGGGACGGGCATATCTTGGATCTGCTaGTCACACCTGGCCCATGGTGTGCAGCAATCGCCA +
Preference number: 6 (lower is better)
Translates to: GSLWGTGISWIC*SHLAHGVQQSP
Trigger: TGGCGATTGCTGCACACCATGGGCCAGGTGTGATCAGCAGATCCAAGATATGCCCGTCCCCCAGAGTGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp AGAGTAATCCCACGCTGGCCCCTGTCCCAGGGGGCTTaGCAGGAGAGAGCCTTAACTTTCCCAGCACTTTCG +
Preference number: 6 (lower is better)
Translates to: RVIPRWPLSQGA*QERALTFPALS
Trigger: CGAAAGTGCTGGGAAAGTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp AGAGGGAAGAGTGGTGGACTGTGCTGCCACTGGCAATaGAGCACACATGCTCCTCTCCTGCTGGAGGCCACT +
Preference number: 6 (lower is better)
Translates to: RGKSGGLCCHWQ*STHAPLLLEAT
Trigger: AGTGGCCTCCAGCAGGAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp GAGAGTAATCCCACGCTGGCCCCTGTCCCAGGGGGCTaGGCAGGAGAGAGCCTTAACTTTCCCAGCACTTTC +
Preference number: 6 (lower is better)
Translates to: ESNPTLAPVPGG*AGESLNFPSTF
Trigger: GAAAGTGCTGGGAAAGTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp TGTCTAAGCAGCTGCTGTCTCCAGTCTGCCGGCATTTaGCCACAGCTCTCCTCTCCCTTCACAGGGGTGGGC +
Preference number: 6 (lower is better)
Translates to: CLSSCCLQSAGI*PQLSSPFTGVG
Trigger: GCCCACCCCTGTGAAGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp GGCAGGTTGGAGAGTAATCCCACGCTGGCCCCTGTCCCAGGGGGCTaGGCAGGAGAGAGCCTTAACTTTCCCAGCACTTTCGTCATCTTC +
Preference number: 6 (lower is better)
Translates to: GRLESNPTLAPVPGG*AGESLNFPSTFVIF
Trigger: GAAGATGACGAAAGTGCTGGGAAAGTTAAGGCTCTCTCCTGCCAAGCCCCCTGGGACAGGGGCCAGCGTGGGATTACTCTCCAACCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp GGGGGATGTTCCCTGGAGGGACAGCCTCCCGTTGGCTaGGTAATGGCTTTGCATCTAGAGGCTGTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: GGCSLEGQPPVG*VMALHLEAVGK
Trigger: CTTTCCCACAGCCTCTAGATGCAAAGCCATTACTCAGCCAACGGGAGGCTGTCCCTCCAGGGAACATCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp CCGCTAATGTTCGAAGGCTGTGCAGGTAACCAATGGTaGGAGGGAGGGACTCCAGCTCGTTGCAGCTGCAGT +
Preference number: 6 (lower is better)
Translates to: PLMFEGCAGNQW*EGGTPARCSCS
Trigger: ACTGCAGCTGCAACGAGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGCACAGCCTTCGAACATTAGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp CAACCGCTAATGTTCGAAGGCTGTGCAGGTAACCAATaGTGGGAGGGAGGGACTCCAGCTCGTTGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: QPLMFEGCAGNQ*WEGGTPARCSC
Trigger: GCAGCTGCAACGAGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGCACAGCCTTCGAACATTAGCGGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp CAGCGGCATGGCACCAGGCGGCCAATGAGCTTCCGTTaGGTGGTCATCTCCAAGCACTGCAACTCCTCTTCA +
Preference number: 6 (lower is better)
Translates to: QRHGTRRPMSFR*VVISKHCNSSS
Trigger: TGAAGAGGAGTTGCAGTGCTTGGAGATGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGCCATGCCGCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS CAA 90 bp CGTAATGGGAGCCATCAGTCCAGTTGTCAGGGAAAGCATCACTCATaGGCAGCCTATCAGGACGCTGGGGGATGTTCCCTGGAGGGACAG +
Preference number: 6 (lower is better)
Translates to: RNGSHQSSCQGKHHS*AAYQDAGGCSLEGQ
Trigger: CTGTCCCTCCAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCCTGACAACTGGACTGATGGCTCCCATTACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp TGCGCTGTTGTCTCTGCTCCTCCCACAGGGTGGGGTTaGAGCTGTCGCTGTCTGACTGGAAATCTTCGTCAC +
Preference number: 6 (lower is better)
Translates to: CAVVSAPPTGWG*SCRCLTGNLRH
Trigger: GTGACGAAGATTTCCAGTCAGACAGCGACAGCTTCAACCCCACCCTGTGGGAGGAGCAGAGACAACAGCGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp GGTACTGACTGGCTCCTGGACATACTGGACATGCCATaGTCTGGTCCCAAGAACTTGTCTGGCCGCTCATGG +
Preference number: 6 (lower is better)
Translates to: GTDWLLDILDMP*SGPKNLSGRSW
Trigger: CCATGAGCGGCCAGACAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GCCATCAGTCCAGTTGTCAGGGAAAGCATCACTCATTaGCAGCCTATCAGGACGCTGGGGGATGTTCCCTGG +
Preference number: 6 (lower is better)
Translates to: AISPVVRESITH*QPIRTLGDVPW
Trigger: CCAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCCTGACAACTGGACTGATGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp GTTGCAGGCTGCAGTGGGAGTAATCCAACACTGAGATaGTCTCTTCCTCTCCACGGAAGCAGCGGCATGGCA +
Preference number: 6 (lower is better)
Translates to: VAGCSGSNPTLR*SLPLHGSSGMA
Trigger: TGCCATGCCGCTGCTTCCGTGGAGAGGAAGAGATCATCTCAGTGTTGGATTACTCCCACTGCAGCCTGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp CACCTGTTGCAGGCTGCAGTGGGAGTAATCCAACACTaGGATGATCTCTTCCTCTCCACGGAAGCAGCGGCA +
Preference number: 6 (lower is better)
Translates to: HLLQAAVGVIQH*DDLFLSTEAAA
Trigger: TGCCGCTGCTTCCGTGGAGAGGAAGAGATCATCTCAGTGTTGGATTACTCCCACTGCAGCCTGCAACAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp ACATGGGTACTGACTGGCTCCTGGACATACTGGACATaGCATGCTCTGGTCCCAAGAACTTGTCTGGCCGCT +
Preference number: 6 (lower is better)
Translates to: TWVLTGSWTYWT*HALVPRTCLAA
Trigger: AGCGGCCAGACAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp CTGCTGAATGGTCACTTTGTTGATGTTCCCTTCATATaGCTGCTGCTCCCGGCTGCGGTGCTGAAGGCTCTG +
Preference number: 6 (lower is better)
Translates to: LLNGHFVDVPFI*LLLPAAVLKAL
Trigger: CAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGCCATATGAAGGGAACATCAACAAAGTGACCATTCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp AGCCATCAGTCCAGTTGTCAGGGAAAGCATCACTCATaGGCAGCCTATCAGGACGCTGGGGGATGTTCCCTG +
Preference number: 6 (lower is better)
Translates to: SHQSSCQGKHHS*AAYQDAGGCSL
Trigger: CAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCCTGACAACTGGACTGATGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp GCTTCTATATGTCTAAGCAGCTGCTGTCTCCAGTCTGCCGGCATTTaGCCACAGCTCTCCTCTCCCTTCACAGGGGTGGGCCTTGTCTTT +
Preference number: 6 (lower is better)
Translates to: ASICLSSCCLQSAGI*PQLSSPFTGVGLVF
Trigger: AAAGACAAGGCCCACCCCTGTGAAGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACATATAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp TCAAATTCAAAGGCAACAGTCATGCGCTGTTGTCTCTaGTCCTCCCACAGGGTGGGGTTGAAGCTGTCGCTG +
Preference number: 6 (lower is better)
Translates to: SNSKATVMRCCL*SSHRVGLKLSL
Trigger: CAGCGACAGCTTCAACCCCACCCTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTTGCCTTTGAATTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp TTTCAACCTGTCTGCCACTTAGAGAGGGAAGAGTGGTaGACTGTGCTGCCACTGGCAATGGAGCACACATGC +
Preference number: 6 (lower is better)
Translates to: FQPVCHLEREEW*TVLPLAMEHTC
Trigger: GCATGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAAGTGGCAGACAGGTTGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GCATCTCGTCATCCAACATGGGTACTGACTGGCTCCTaGACATACTGGACATGCCATGCTCTGGTCCCAAGA +
Preference number: 6 (lower is better)
Translates to: ASRHPTWVLTGS*TYWTCHALVPR
Trigger: TCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp AGATGGCTGGGAAAAGGAGAACATCTGTTCCATGGGTaGGTATCCTCTGTAGGCTCTGGGGCTGACCAGATC +
Preference number: 6 (lower is better)
Translates to: RWLGKGEHLFHG*VSSVGSGADQI
Trigger: GATCTGGTCAGCCCCAGAGCCTACAGAGGATACCCACCCATGGAACAGATGTTCTCCTTTTCCCAGCCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp AGTAATGGTGTCCGGAGGTACATCCCGCCTCCCAAGTaGGTAAGGATTCCATTGGCCACTAGGAGAGACATC +
Preference number: 6 (lower is better)
Translates to: SNGVRRYIPPPK*VRIPLATRRDI
Trigger: GATGTCTCTCCTAGTGGCCAATGGAATCCTTACCCACTTGGGAGGCGGGATGTACCTCCGGACACCATTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS TCA 72 bp CATCCAGATAGAGCTCTTCTAGTGTGCGTTCGAAGTTaGAGACCTCCTTGGGCACCTGTTGCAGGCTGCAGT +
Preference number: 6 (lower is better)
Translates to: HPDRALLVCVRS*RPPWAPVAGCS
Trigger: ACTGCAGCCTGCAACAGGTGCCCAAGGAGGTCTTCAACTTCGAACGCACACTAGAAGAGCTCTATCTGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp GCAATGGCGATTGGAACTGCTGAATGGTCACTTTGTTaGTGTTCCCTTCATATGGCTGCTGCTCCCGGCTGC +
Preference number: 6 (lower is better)
Translates to: AMAIGTAEWSLC*CSLHMAAAPGC
Trigger: GCAGCCGGGAGCAGCAGCCATATGAAGGGAACATCAACAAAGTGACCATTCAGCAGTTCCAATCGCCATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp CGAAGTGCTGCACGAGCCTCCTTACAAGGACTTCTCTaGTATTGTGGGGGATTCCTTCCCCGTATTAGGCTC +
Preference number: 6 (lower is better)
Translates to: RSAARASLQGLL*YCGGFLPRIRL
Trigger: GAGCCTAATACGGGGAAGGAATCCCCCACAATATCAGAGAAGTCCTTGTAAGGAGGCTCGTGCAGCACTTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS GCA 72 bp GGCACTTCTGTTTCTGGTGTGTGTCTGTGTGTGGACTaGTCCAGTTCCAGGGGAACACCGACAATCCTTTCT +
Preference number: 6 (lower is better)
Translates to: GTSVSGVCLCVD*SSSRGTPTILS
Trigger: AGAAAGGATTGTCGGTGTTCCCCTGGAACTGGAGCAGTCCACACACAGACACACACCAGAAACAGAAGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp GCACTGCAACTCCTCTTCAGGCCTCTTCCGAAGTGCTaGACGAGCCTCCTTACAAGGACTTCTCTGATATTG +
Preference number: 6 (lower is better)
Translates to: ALQLLFRPLPKC*TSLLTRTSLIL
Trigger: CAATATCAGAGAAGTCCTTGTAAGGAGGCTCGTGCAGCACTTCGGAAGAGGCCTGAAGAGGAGTTGCAGTGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS GCA 72 bp CAAGCACTGCAACTCCTCTTCAGGCCTCTTCCGAAGTaGTGCACGAGCCTCCTTACAAGGACTTCTCTGATA +
Preference number: 6 (lower is better)
Translates to: QALQLLFRPLPK*CTSLLTRTSLI
Trigger: TATCAGAGAAGTCCTTGTAAGGAGGCTCGTGCAGCACTTCGGAAGAGGCCTGAAGAGGAGTTGCAGTGCTTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238317.3
CDS CCA 72 bp ATTCTGCCAGGGATTGGAAGGAGGCACTTCTGTTTCTaGTGTGTGTCTGTGTGTGGACTGCTCCAGTTCCAG +
Preference number: 6 (lower is better)
Translates to: ILPGIGRRHFCF*CVSVCGLLQFQ
Trigger: CTGGAACTGGAGCAGTCCACACACAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GTGGTATTCCCATGGCACTCCCGGAGAAAAGGGACCTaGTGTCTCTGTAGGCTCCTTCATGTGGTCTTTTCT +
Preference number: 6 (lower is better)
Translates to: VVFPWHSRRKGT*CLCRLLHVVFS
Trigger: AGAAAAGACCACATGAAGGAGCCTACAGAGACACCAGGTCCCTTTTCTCCGGGAGTGCCATGGGAATACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp TCCATACATGAGCATCTCGTCATCCAACATGGGTACTaGCTGGCTCCTGGACATACTGGACATGCCATGCTC +
Preference number: 6 (lower is better)
Translates to: SIHEHLVIQHGY*LAPGHTGHAML
Trigger: GAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGATGCTCATGTATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp TTATTTCAACCTGTCTGCCACTTAGAGAGGGAAGAGTaGTGGACTGTGCTGCCACTGGCAATGGAGCACACA +
Preference number: 6 (lower is better)
Translates to: LFQPVCHLEREE*WTVLPLAMEHT
Trigger: TGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCTCTAAGTGGCAGACAGGTTGAAATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp AAAGGTGGTGCAATCCTGTTACCCCACAAAGAGTTATaGACGGCATCTTTAGCTGTTGCCTGCAAGGACCCC +
Preference number: 6 (lower is better)
Translates to: KGGAILLPHKEL*TASLAVACKDP
Trigger: GGGGTCCTTGCAGGCAACAGCTAAAGATGCCGTCCATAACTCTTTGTGGGGTAACAGGATTGCACCACCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp TACATGAGCATCTCGTCATCCAACATGGGTACTGACTaGCTCCTGGACATACTGGACATGCCATGCTCTGGT +
Preference number: 6 (lower is better)
Translates to: YMSISSSNMGTD*LLDILDMPCSG
Trigger: ACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGTCAGTACCCATGTTGGATGACGAGATGCTCATGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp AATGGACTGGGAGTTCTGGTCCAATTCTGCCAGGGATaGGAAGGAGGCACTTCTGTTTCTGGTGTGTGTCTG +
Preference number: 6 (lower is better)
Translates to: NGLGVLVQFCQG*EGGTSVSGVCL
Trigger: CAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp AGGTACATCCCGCCTCCCAAGTGGGTAAGGATTCCATaGGCCACTAGGAGAGACATCTTCTTGTCCATTGTC +
Preference number: 6 (lower is better)
Translates to: RYIPPPKWVRIP*ATRRDIFLSIV
Trigger: GACAATGGACAAGAAGATGTCTCTCCTAGTGGCCAATGGAATCCTTACCCACTTGGGAGGCGGGATGTACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
CDS CAA 90 bp CTATCTTCAAATGGACTGGGAGTTCTGGTCCAATTCTGCCAGGGATaGGAAGGAGGCACTTCTGTTTCTGGTGTGTGTCTGTGTGTGGAC +
Preference number: 6 (lower is better)
Translates to: LSSNGLGVLVQFCQG*EGGTSVSGVCLCVD
Trigger: GTCCACACACAGACACACACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp CACAAAGAGTTATGGACGGCATCTTTAGCTGTTGCCTaGAAGGACCCCACTTTCATCCGGGTGTTAGAGGAT +
Preference number: 6 (lower is better)
Translates to: HKELWTASLAVA*KDPTFIRVLED
Trigger: ATCCTCTAACACCCGGATGAAAGTGGGGTCCTTGCAGGCAACAGCTAAAGATGCCGTCCATAACTCTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp CTGTCTAACCTTCTAGCTTCTATATGTCTAAGCAGCTaGTGTCTCCAGTCTGCCGGCATTTTGCCACAGCTC +
Preference number: 6 (lower is better)
Translates to: LSNLLASICLSS*CLQSAGILPQL
Trigger: GAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACATATAGAAGCTAGAAGGTTAGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp TGCTCATCTTCGTACCTGCCATTCCTCTTGAGGAATTaGGGATCAGTCATTGAAATGCTGCTCTGGCCTTCC +
Preference number: 6 (lower is better)
Translates to: CSSSYLPFLLRN*GSVIEMLLWPS
Trigger: GGAAGGCCAGAGCAGCATTTCAATGACTGATCCCCAATTCCTCAAGAGGAATGGCAGGTACGAAGATGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp CCGGCATTTTGCCACAGCTCTCCTCTCCCTTCACAGGGGTGGGCCTaGTCTTTATATCACTGTTATCTGATGTCTTGTCACCATAGTTAC +
Preference number: 6 (lower is better)
Translates to: PAFCHSSPLPSQGWA*SLYHCYLMSCHHSY
Trigger: GTAACTATGGTGACAAGACATCAGATAACAGTGATATAAAGACAAGGCCCACCCCTGTGAAGGGAGAGGAGAGCTGTGGCAAAATGCCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp AGGAAAACTTCCCGCCTGCGCTTTCACTTCTTGATATaGAGGGTGCTCATCTTCGTACCTGCCATTCCTCTT +
Preference number: 6 (lower is better)
Translates to: RKTSRLRFHFLI*RVLIFVPAIPL
Trigger: AAGAGGAATGGCAGGTACGAAGATGAGCACCCTTCATATCAAGAAGTGAAAGCGCAGGCGGGAAGTTTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp CTATCTTCAAATGGACTGGGAGTTCTGGTCCAATTCTaGCAGGGATTGGAAGGAGGCACTTCTGTTTCTGGT +
Preference number: 6 (lower is better)
Translates to: LSSNGLGVLVQF*QGLEGGTSVSG
Trigger: ACCAGAAACAGAAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GAAAAGCAGTCCTATCTTCAAATGGACTGGGAGTTCTaGTCCAATTCTGCCAGGGATTGGAAGGAGGCACTT +
Preference number: 6 (lower is better)
Translates to: EKQSYLQMDWEF*SNSARDWKEAL
Trigger: AAGTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATAGGACTGCTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp TTGGACTTTATATCTTTCATGAGCGGGGAAAGCCTCTCTGTGCTTTaGCTAATTGCGATAACACCTTTAGACGAATCTGGGCGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: LDFISFMSGESLSVL*LIAITPLDESGRQW
Trigger: CCACTGCCGCCCAGATTCGTCTAAAGGTGTTATCGCAATTAGCAAAAGCACAGAGAGGCTTTCCCCGCTCATGAAAGATATAAAGTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp ATAACACCTTTAGACGAATCTGGGCGGCAGTGGATTTaGGAAAAGACATTACCGAGACTCCTGTTAGGGGTG +
Preference number: 6 (lower is better)
Translates to: ITPLDESGRQWI*EKTLPRLLLGV
Trigger: CACCCCTAACAGGAGTCTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGTGTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GCAATCCTATTGAGTCAGGCAGCTGTTGCAACATATTaGATGATAGTAAGAGGTCCTCGAGGGCTTCACATC +
Preference number: 6 (lower is better)
Translates to: AILLSQAAVATY*MIVRGPRGLHI
Trigger: GATGTGAAGCCCTCGAGGACCTCTTACTATCATCCAATATGTTGCAACAGCTGCCTGACTCAATAGGATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp GGCTTTTACTTCCACCGCTCCTTGTGGGTTGAAGCTTaGGTCAAACTGATAGACCTTCTTAGTCATAGACGC +
Preference number: 6 (lower is better)
Translates to: GFYFHRSLWVEA*VKLIDLLSHRR
Trigger: GCGTCTATGACTAAGAAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTAAAAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp TGGAATCCTCTTCTCGGCTTTTACTTCCACCGCTCCTaGTGGGTTGAAGCTTTGGTCAAACTGATAGACCTT +
Preference number: 6 (lower is better)
Translates to: WNPLLGFYFHRS*WVEALVKLIDL
Trigger: AAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTAAAAGCCGAGAAGAGGATTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp CCTCTTCTCGGCTTTTACTTCCACCGCTCCTTGTGGGTTGAAGCTTaGGTCAAACTGATAGACCTTCTTAGTCATAGACGCTTTTTGTTG +
Preference number: 6 (lower is better)
Translates to: PLLGFYFHRSLWVEA*VKLIDLLSHRRFLL
Trigger: CAACAAAAAGCGTCTATGACTAAGAAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTAAAAGCCGAGAAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp GCTGAACCCTTGTCAGAAGGTTTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTGATACTAAATCCAAGC +
Preference number: 6 (lower is better)
Translates to: AEPLSEGLKGFP*PLIPPLILNPS
Trigger: GCTTGGATTTAGTATCAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGGTTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199890.5
CDS CCA 72 bp AATCCTCTTCTCGGCTTTTACTTCCACCGCTCCTTGTaGGTTGAAGCTTTGGTCAAACTGATAGACCTTCTT +
Preference number: 6 (lower is better)
Translates to: NPLLGFYFHRSL*VEALVKLIDLL
Trigger: AAGAAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTAAAAGCCGAGAAGAGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp AGCAATCCTATTGAGTCAGGCAGCTGTTGCAACATATaGGATGATAGTAAGAGGTCCTCGAGGGCTTCACAT +
Preference number: 6 (lower is better)
Translates to: SNPIESGSCCNI*DDSKRSSRASH
Trigger: ATGTGAAGCCCTCGAGGACCTCTTACTATCATCCAATATGTTGCAACAGCTGCCTGACTCAATAGGATTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp GCTTTGGTCAAACTGATAGACCTTCTTAGTCATAGACGCTTTTTGTaGGGGTGGGCCTTTACTACTTCCATACATGAGCATCTCGTCATC +
Preference number: 6 (lower is better)
Translates to: ALVKLIDLLSHRRFL*GWAFTTSIHEHLVI
Trigger: GATGACGAGATGCTCATGTATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATGACTAAGAAGGTCTATCAGTTTGACCAAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp GAAGCTTTGGTCAAACTGATAGACCTTCTTAGTCATAGACGCTTTTaGTTGGGGTGGGCCTTTACTACTTCCATACATGAGCATCTCGTC +
Preference number: 6 (lower is better)
Translates to: EALVKLIDLLSHRRF*LGWAFTTSIHEHLV
Trigger: GACGAGATGCTCATGTATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATGACTAAGAAGGTCTATCAGTTTGACCAAAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp AACATCTTTAACTTCCCTATAGACCCAGGCAGCACTTaGAATGCATTGTTATCCATCCACAGCTCCCTCAAA +
Preference number: 6 (lower is better)
Translates to: NIFNFPIDPGST*NALLSIHSSLK
Trigger: TTTGAGGGAGCTGTGGATGGATAACAATGCATTGCAAGTGCTGCCTGGGTCTATAGGGAAGTTAAAGATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp TGGATGAACAAAAGAATCCTCCACTGTAATCTCCTTTaGGGCCACCGGCCACTTGTGTTCAAACTTTTCTTT +
Preference number: 6 (lower is better)
Translates to: WMNKRILHCNLL*GHRPLVFKLFF
Trigger: AAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCCAAAGGAGATTACAGTGGAGGATTCTTTTGTTCATCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp GCTTTTGCTAATTGCGATAACACCTTTAGACGAATCTaGGCGGCAGTGGATTTGAGAAAAGACATTACCGAG +
Preference number: 6 (lower is better)
Translates to: AFANCDNTFRRI*AAVDLRKDITE
Trigger: CTCGGTAATGTCTTTTCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGTGTTATCGCAATTAGCAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CCA 72 bp ATAGACCTTCTTAGTCATAGACGCTTTTTGTTGGGGTaGGCCTTTACTACTTCCATACATGAGCATCTCGTC +
Preference number: 6 (lower is better)
Translates to: IDLLSHRRFLLG*AFTTSIHEHLV
Trigger: GACGAGATGCTCATGTATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATGACTAAGAAGGTCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp ATATCTTTCATGAGCGGGGAAAGCCTCTCTGTGCTTTaGCTAATTGCGATAACACCTTTAGACGAATCTGGG +
Preference number: 6 (lower is better)
Translates to: ISFMSGESLSVL*LIAITPLDESG
Trigger: CCCAGATTCGTCTAAAGGTGTTATCGCAATTAGCAAAAGCACAGAGAGGCTTTCCCCGCTCATGAAAGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp GTACCGACGTCAATCTCATCAATACTCTGGGACTTTTTGAACTTGTaGGACTTTATATCTTTCATGAGCGGGGAAAGCCTCTCTGTGCTT +
Preference number: 6 (lower is better)
Translates to: VPTSISSILWDFLNL*DFISFMSGESLSVL
Trigger: AAGCACAGAGAGGCTTTCCCCGCTCATGAAAGATATAAAGTCCAACAAGTTCAAAAAGTCCCAGAGTATTGATGAGATTGACGTCGGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp CACAGGGGTGGGCCTTGTCTTTATATCACTGTTATCTaGTGTCTTGTCACCATAGTTACCCAAGTTATAGTC +
Preference number: 6 (lower is better)
Translates to: HRGGPCLYITVI*CLVTIVTQVIV
Trigger: GACTATAACTTGGGTAACTATGGTGACAAGACATCAGATAACAGTGATATAAAGACAAGGCCCACCCCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp ACCGGCCACTTGTGTTCAAACTTTTCTTTCACAGTTTaGTCCGTGTTAGCTGTTGGATTTGAGTTCTCAACA +
Preference number: 6 (lower is better)
Translates to: TGHLCSNFSFTV*SVLAVGFEFST
Trigger: TGTTGAGAACTCAAATCCAACAGCTAACACGGAGCAAACTGTGAAAGAAAAGTTTGAACACAAGTGGCCGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp AAGATACCCTTGTCAGAAGGTTTGAAAGGATTTCCTTaGCCACTAATTCCACCGCTGATACTAAATCCAAGC +
Preference number: 6 (lower is better)
Translates to: KIPLSEGLKGFP*PLIPPLILNPS
Trigger: GCTTGGATTTAGTATCAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGGTATCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp GTCAAACTGATAGACCTTCTTAGTCATAGACGCTTTTaGTTGGGGTGGGCCTTTACTACTTCCATACATGAG +
Preference number: 6 (lower is better)
Translates to: VKLIDLLSHRRF*LGWAFTTSIHE
Trigger: CTCATGTATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCGTCTATGACTAAGAAGGTCTATCAGTTTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 90 bp AACTTTTTCAGCAATCCTATTGAGTCAGGCAGCTGTTGCAACATATaGGATGATAGTAAGAGGTCCTCGAGGGCTTCACATCCAGAAATA +
Preference number: 6 (lower is better)
Translates to: NFFSNPIESGSCCNI*DDSKRSSRASHPEI
Trigger: TATTTCTGGATGTGAAGCCCTCGAGGACCTCTTACTATCATCCAATATGTTGCAACAGCTGCCTGACTCAATAGGATTGCTGAAAAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS TCA 72 bp AGGTCATTATCAGGAATGCTTAGTTTCCGTAGAGCTTaGCAGTTGAACAATTGCTTAGGTAGCTCCTCAATC +
Preference number: 6 (lower is better)
Translates to: RSLSGMLSFRRA*QLNNCLGSSSI
Trigger: GATTGAGGAGCTACCTAAGCAATTGTTCAACTGTCAAGCTCTACGGAAACTAAGCATTCCTGATAATGACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp AAAGATACCCTTGTCAGAAGGTTTGAAAGGATTTCCTaGCCCACTAATTCCACCGCTGATACTAAATCCAAG +
Preference number: 6 (lower is better)
Translates to: KDTLVRRFERIS*PTNSTADTKSK
Trigger: CTTGGATTTAGTATCAGCGGTGGAATTAGTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGGTATCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106044.6
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp ACGTCAATCTCATCAATACTCTGGGACTTTTTGAACTaGTTGGACTTTATATCTTTCATGAGCGGGGAAAGC +
Preference number: 6 (lower is better)
Translates to: TSISSILWDFLN*LDFISFMSGES
Trigger: GCTTTCCCCGCTCATGAAAGATATAAAGTCCAACAAGTTCAAAAAGTCCCAGAGTATTGATGAGATTGACGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS CAA 72 bp TTGTCAGAAAGCCACAATGCTGCAAGCTCTTTGAGTTaGGTGAAAGAGAATGGCAAATTCTTCAACCTATTA +
Preference number: 6 (lower is better)
Translates to: LSESHNAASSLS*VKENGKFFNLL
Trigger: TAATAGGTTGAAGAATTTGCCATTCTCTTTCACCAAACTCAAAGAGCTTGCAGCATTGTGGCTTTCTGACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3
CDS GCA 72 bp TTATCACTTAGATTTAAGACACGCAGTCTCTGCATCTaGCCAATTTCTTCAGGAAGAAATTCTAGCTTATTG +
Preference number: 6 (lower is better)
Translates to: LSLRFKTRSLCI*PISSGRNSSLL
Trigger: CAATAAGCTAGAATTTCTTCCTGAAGAAATTGGGCAGATGCAGAGACTGCGTGTCTTAAATCTAAGTGATAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106044.6
ENSMUST00000199890.5
ENSMUST00000200137.5
ENSMUST00000200196.5
ENSMUST00000238317.3