Pregenerated sensors for LRRC69 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023151Ensembl transcript IDs: ENSMUST00000023917.8, ENSMUST00000108276.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCCTGAATGTCCAGCGAGCACCTACAGACATCACAAGATTTTCTaGATGTCTTCTCCTTCAGATATGGACCAACAGGACAGCTCTTCT | + |
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Preference number: 1 (lower is better) Translates to: FPECPASTYRHHKIF*MSSPSDMDQQDSSS Trigger: AGAAGAGCTGTCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTGTAGGTGCTCGCTGGACATTCAGGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| 3UTR-3UTR CCA 90 bp | CTATATACCACCCATATGGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTACCTTCTCCTTCAGATATaGACCAACAGGACAGCTCTT | + |
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Preference number: 2 (lower is better) Translates to: LYTTHMGHLFPECPASTYLLLQI*TNRTAL Trigger: AAGAGCTGTCCTGTTGGTCCATATCTGAAGGAGAAG...GTAGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCATATGGGTGGTATATAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| 3UTR CCA 72 bp | GTGGGGCATGCGCTGACCTGGGGCACAGCAGACACCTaGCCCAATGAGGTTCTGAAGGACTATCTCACCTGC | + |
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Preference number: 3 (lower is better) Translates to: VGHALTWGTADT*PNEVLKDYLTC Trigger: GCAGGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGTCAGCGCATGCCCCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| 3UTR TCA 72 bp | CAAGTCAGAGAAAGGCATCATCAGTGGGGCATGCGCTaGCCTGGGGCACAGCAGACACCTGGCCCAATGAGG | + |
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Preference number: 3 (lower is better) Translates to: QVRERHHQWGMR*PGAQQTPGPMR Trigger: CCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGTCAGCGCATGCCCCACTGATGATGCCTTTCTCTGACTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| 3UTR CCA 72 bp | CAGAGAAAGGCATCATCAGTGGGGCATGCGCTGACCTaGGGCACAGCAGACACCTGGCCCAATGAGGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: QRKASSVGHALT*GTADTWPNEVL Trigger: CAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGTCAGCGCATGCCCCACTGATGATGCCTTTCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| 3UTR TCA 72 bp | TGTCCAGCGAGCACCTACAGACATCACAAGATTTTCTaGATGTCTTCTCCTTCAGATATGGACCAACAGGAC | + |
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Preference number: 3 (lower is better) Translates to: CPASTYRHHKIF*MSSPSDMDQQD Trigger: GTCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTGTAGGTGCTCGCTGGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| 3UTR CCA 72 bp | AGGTACTTTGATGTTCAATACTATATACCACCCATATaGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCT | + |
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Preference number: 3 (lower is better) Translates to: RYFDVQYYIPPI*AISSLNVQRAP Trigger: AGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCATATGGGTGGTATATAGTATTGAACATCAAAGTACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR TCA 90 bp | ACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCGTCAGCCTCAGATTCTaGAAGCCTGCCGGAAATATC | + |
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Preference number: 4 (lower is better) Translates to: TWGTADTWPNEVLKDYLTVSLRF*KPAGNI Trigger: GATATTTCCGGCAGGCTTTCAGAATCTGAGGCTGAC...GGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR TCA 90 bp | TGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCTGCGGTTCTTCAGGAACTTaGTCTCCTCAGGGATGTACA | + |
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Preference number: 4 (lower is better) Translates to: WGTADTWPNEVLKDYLTCGSSGT*SPQGCT Trigger: TGTACATCCCTGAGGAGATCAAGTTCCTGAAGAACC...GCAGGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR TCA 90 bp | TGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCTGCTGGAGAGTTTGTCCTTaGCCTCTGGGTAACTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: WGTADTWPNEVLKDYLTCWRVCP*PLGNSL Trigger: TAGAGAGTTACCCAGAGGTCAAGGACAAACTCTCCA...GCAGGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CCA 90 bp | ACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCCTTCCAGTTCTTCGATaGAGCCACAAAGTAAACGCA | + |
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Preference number: 4 (lower is better) Translates to: TWGTADTWPNEVLKDYLTLPVLR*SHKVNA Trigger: TGCGTTTACTTTGTGGCTCCATCGAAGAACTGGAAG...GGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR GCA 90 bp | CTGACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCTGCAGTTCAGAAAGATaGTCAAGGGAACAAAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LTWGTADTWPNEVLKDYLCSSER*SREQSS Trigger: AGAGCTTTGTTCCCTTGAGCATCTTTCTGAACTGCA...GAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR TCA 90 bp | CATATGGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTACAGACATCACAAGTGGAGAGTTTGTCCTTaGCCTCTGGGTAACTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: HMGHLFPECPASTYRHHKWRVCP*PLGNSL Trigger: TAGAGAGTTACCCAGAGGTCAAGGACAAACTCTCCA...CTTGTGATGTCTGTAGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCATATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR GCA 90 bp | CTGACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCTCAGCTTTAGGTTTCTaGTTATCTTCCAGTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: LTWGTADTWPNEVLKDYLSALGF*LSSSSS Trigger: CGAAGAACTGGAAGATAAGCAGAAACCTAAAGCTGA...GAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR TCA 90 bp | TGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCTGCGAGATGGAATTATTTTaGAGGTCTAGAGTCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: WGTADTWPNEVLKDYLTCEMELF*RSRVFR Trigger: TCTGAAGACTCTAGACCTTCAAAATAATTCCATCTC...GCAGGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CCA 90 bp | ACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCGCTCTGGGCATACTTTaGAGATGGAATTATTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: TWGTADTWPNEVLKDYLTALGIL*RWNYFE Trigger: TTCAAAATAATTCCATCTCCAAAGTATGCCCAGAGC...GGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR TCA 90 bp | GGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTACAGACATCACAAGATTTTCCTTCAATGTTGTTCCTaGCCAGAAAGAGCTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: GHLFPECPASTYRHHKIFLQCCS*PERAAE Trigger: TTCAGCAGCTCTTTCTGGTCAGGAACAACATTGAAG...GAAAATCTTGTGATGTCTGTAGGTGCTCGCTGGACATTCAGGGAAGAGATGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | ACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCGGCATACTTTGGAGATaGAATTATTTTGAAGGTCTA | + |
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Preference number: 4 (lower is better) Translates to: TWGTADTWPNEVLKDYLTGILWR*NYFEGL Trigger: TAGACCTTCAAAATAATTCCATCTCCAAAGTATGCC...GGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR TCA 90 bp | CTGAATGTCCAGCGAGCACCTACAGACATCACAAGATTTTCTGAATGTCTTCTCGGTTCTTCAGGAACTTaGTCTCCTCAGGGATGTACA | + |
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Preference number: 4 (lower is better) Translates to: LNVQRAPTDITRFSECLLGSSGT*SPQGCT Trigger: TGTACATCCCTGAGGAGATCAAGTTCCTGAAGAACC...GAGAAGACATTCAGAAAATCTTGTGATGTCTGTAGGTGCTCGCTGGACATTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR TCA 90 bp | GAAGGTACTTTGATGTTCAATACTATATACCACCCATATGGGCCATCTCTTCCCGTCAGCCTCAGATTCTaGAAGCCTGCCGGAAATATC | + |
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Preference number: 4 (lower is better) Translates to: EGTLMFNTIYHPYGPSLPVSLRF*KPAGNI Trigger: GATATTTCCGGCAGGCTTTCAGAATCTGAGGCTGAC...GGGAAGAGATGGCCCATATGGGTGGTATATAGTATTGAACATCAAAGTACCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | TACTATATACCACCCATATGGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTGCTCTGGGCATACTTTaGAGATGGAATTATTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: YYIPPIWAISSLNVQRAPALGIL*RWNYFE Trigger: TTCAAAATAATTCCATCTCCAAAGTATGCCCAGAGC...AGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCATATGGGTGGTATATAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | TGGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTACAGACATCACAAGATTTGGAACTTCTTGTAAATaGTTGTTTCCCAGGTTTAGT | + |
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Preference number: 4 (lower is better) Translates to: WAISSLNVQRAPTDITRFGTSCK*LFPRFS Trigger: ACTAAACCTGGGAAACAACCATTTACAAGAAGTTCC...AAATCTTGTGATGTCTGTAGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | GAAGGTACTTTGATGTTCAATACTATATACCACCCATATGGGCCATCTCTTCCCCTTCCAGTTCTTCGATaGAGCCACAAAGTAAACGCA | + |
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Preference number: 4 (lower is better) Translates to: EGTLMFNTIYHPYGPSLPLPVLR*SHKVNA Trigger: TGCGTTTACTTTGTGGCTCCATCGAAGAACTGGAAG...GGGAAGAGATGGCCCATATGGGTGGTATATAGTATTGAACATCAAAGTACCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | CACCTACAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAGAACAGACTGATGTCTaGACAGGAATCAGCTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: HLQTSQDFLNVFSFRYGPEQTDV*TGISFR Trigger: CCTAAAGCTGATTCCTGTCCAGACATCAGTCTGTTC...TGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTGTAGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR GCA 90 bp | CAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAACAGGATGCAGTTCAGAAAGATaGTCAAGGGAACAAAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QTSQDFLNVFSFRYGPTGCSSER*SREQSS Trigger: AGAGCTTTGTTCCCTTGAGCATCTTTCTGAACTGCA...TCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR GCA 90 bp | CAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAACAGGACAGCTCTTCTCAGCTTTAGGTTTCTaGTTATCTTCCAGTTCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QDFLNVFSFRYGPTGQLFSALGF*LSSSSS Trigger: CGAAGAACTGGAAGATAAGCAGAAACCTAAAGCTGA...GAAGAGCTGTCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | TTGCTTAATAAATTGAAAGTGACAAGTCAGAGAAAGGCATCATCAGTGGGGCATGAACAGACTGATGTCTaGACAGGAATCAGCTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: LLNKLKVTSQRKASSVGHEQTDV*TGISFR Trigger: CCTAAAGCTGATTCCTGTCCAGACATCAGTCTGTTC...ATGCCCCACTGATGATGCCTTTCTCTGACTTGTCACTTTCAATTTATTAAGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CCA 90 bp | CTACAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAACATTTAGTAACGTCAACTaGGTCAAGGTCCTTAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LQTSQDFLNVFSFRYGPTFSNVN*VKVLSS Trigger: AGAGCTAAGGACCTTGACCCAGTTGACGTTACTAAA...TGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR TCA 90 bp | CACCTACAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAGAGATGGAATTATTTTaGAGGTCTAGAGTCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: HLQTSQDFLNVFSFRYGPEMELF*RSRVFR Trigger: TCTGAAGACTCTAGACCTTCAAAATAATTCCATCTC...TGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTGTAGGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | CAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAACAGGAGGCATACTTTGGAGATaGAATTATTTTGAAGGTCTA | + |
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Preference number: 4 (lower is better) Translates to: QTSQDFLNVFSFRYGPTGGILWR*NYFEGL Trigger: TAGACCTTCAAAATAATTCCATCTCCAAAGTATGCC...TCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CCA 90 bp | TTGCTTAATAAATTGAAAGTGACAAGTCAGAGAAAGGCATCATCAGTGGGGCATGGAACTTCTTGTAAATaGTTGTTTCCCAGGTTTAGT | + |
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Preference number: 4 (lower is better) Translates to: LLNKLKVTSQRKASSVGHGTSCK*LFPRFS Trigger: ACTAAACCTGGGAAACAACCATTTACAAGAAGTTCC...ATGCCCCACTGATGATGCCTTTCTCTGACTTGTCACTTTCAATTTATTAAGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| 3UTR CAA 72 bp | AACATTTATTTGAAAGTTTCAGTGACTGAAGGTACTTaGATGTTCAATACTATATACCACCCATATGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: NIYLKVSVTEGT*MFNTIYHPYGP Trigger: TGGCCCATATGGGTGGTATATAGTATTGAACATCAAAGTACCTTCAGTCACTGAAACTTTCAAATAAATGTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CAA 90 bp | TGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCTGCAGGATCTTAGTGTTCTaGCCACCCTTCAGTGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: WGTADTWPNEVLKDYLTCRILVF*PPFSAV Trigger: AACAGCACTGAAGGGTGGCAAGAACACTAAGATCCT...GCAGGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CAA 90 bp | TGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACTATCTCACCTGCAGGTTCTTCAGGAACTaGATCTCCTCAGGGATGTAC | + |
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Preference number: 5 (lower is better) Translates to: WGTADTWPNEVLKDYLTCRFFRN*ISSGMY Trigger: GTACATCCCTGAGGAGATCAAGTTCCTGAAGAACCT...GCAGGTGAGATAGTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CAA 90 bp | CATGCGCTGACCTGGGGCACAGCAGACACCTGGCCCAATGAGGTTCTGAAGGACAGACTCGTAAGTCTGTaGTCATTCAGATTAAGCATG | + |
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Preference number: 5 (lower is better) Translates to: HALTWGTADTWPNEVLKDRLVSL*SFRLSM Trigger: CATGCTTAATCTGAATGACAACAGACTTACGAGTCT...GTCCTTCAGAACCTCATTGGGCCAGGTGTCTGCTGTGCCCCAGGTCAGCGCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CAA 90 bp | CCACCCATATGGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTACAGACATCAGGGAACAAAGCTCTTaGGGAATCACGGTGAGATTG | + |
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Preference number: 5 (lower is better) Translates to: PPIWAISSLNVQRAPTDIREQSS*GITVRL Trigger: CAATCTCACCGTGATTCCCAAAGAGCTTTGTTCCCT...GATGTCTGTAGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCATATGGGTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CAA 90 bp | ACCACCCATATGGGCCATCTCTTCCCTGAATGTCCAGCGAGCACCTACAGACATAGGTTCTTCAGGAACTaGATCTCCTCAGGGATGTAC | + |
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Preference number: 5 (lower is better) Translates to: TTHMGHLFPECPASTYRHRFFRN*ISSGMY Trigger: GTACATCCCTGAGGAGATCAAGTTCCTGAAGAACCT...ATGTCTGTAGGTGCTCGCTGGACATTCAGGGAAGAGATGGCCCATATGGGTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS GCA 90 bp | GATAGGAACAGACTGATGTCTGGACAGGAATCAGCTTTAGGTTTCTaGTTATCTTCCAGTTCTTCGATGGAGCCACAAAGTAAACGCACT | + |
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Preference number: 5 (lower is better) Translates to: DRNRLMSGQESALGF*LSSSSSMEPQSKRT Trigger: AGTGCGTTTACTTTGTGGCTCCATCGAAGAACTGGAAGATAAGCAGAAACCTAAAGCTGATTCCTGTCCAGACATCAGTCTGTTCCTATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS CCA 90 bp | GGAACTTCTTGTAAATGGTTGTTTCCCAGGTTTAGTAACGTCAACTaGGTCAAGGTCCTTAGCTCTGGGCATACTTTGGAGATGGAATTA | + |
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Preference number: 5 (lower is better) Translates to: GTSCKWLFPRFSNVN*VKVLSSGHTLEMEL Trigger: TAATTCCATCTCCAAAGTATGCCCAGAGCTAAGGACCTTGACCCAGTTGACGTTACTAAACCTGGGAAACAACCATTTACAAGAAGTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS-3UTR CAA 90 bp | CACCTACAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAAGGATCTTAGTGTTCTaGCCACCCTTCAGTGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: HLQTSQDFLNVFSFRYGPRILVF*PPFSAV Trigger: AACAGCACTGAAGGGTGGCAAGAACACTAAGATCCT...TGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTGTAGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS-3UTR CAA 90 bp | CAGACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAACAGGAGGCAACTCTTCAATGTaGTTCCTGACCAGAAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: QTSQDFLNVFSFRYGPTGGNSSM*FLTRKS Trigger: GCTCTTTCTGGTCAGGAACAACATTGAAGAGTTGCC...TCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS TCA 90 bp | GTCAAGGTCCTTAGCTCTGGGCATACTTTGGAGATGGAATTATTTTaGAGGTCTAGAGTCTTCAGATTAGGTAGTTTTTCCAGTGTCGAG | + |
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Preference number: 5 (lower is better) Translates to: VKVLSSGHTLEMELF*RSRVFRLGSFSSVE Trigger: CTCGACACTGGAAAAACTACCTAATCTGAAGACTCTAGACCTTCAAAATAATTCCATCTCCAAAGTATGCCCAGAGCTAAGGACCTTGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS-3UTR CAA 90 bp | TTGCTTAATAAATTGAAAGTGACAAGTCAGAGAAAGGCATCATCAGTGGGGCATGGCAACTCTTCAATGTaGTTCCTGACCAGAAAGAGC | + |
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Preference number: 5 (lower is better) Translates to: LLNKLKVTSQRKASSVGHGNSSM*FLTRKS Trigger: GCTCTTTCTGGTCAGGAACAACATTGAAGAGTTGCC...ATGCCCCACTGATGATGCCTTTCTCTGACTTGTCACTTTCAATTTATTAAGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108276.2 |
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| CDS-3UTR CAA 90 bp | ACATCACAAGATTTTCTGAATGTCTTCTCCTTCAGATATGGACCAACAGGACAGAGACTCGTAAGTCTGTaGTCATTCAGATTAAGCATG | + |
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Preference number: 5 (lower is better) Translates to: TSQDFLNVFSFRYGPTGQRLVSL*SFRLSM Trigger: CATGCTTAATCTGAATGACAACAGACTTACGAGTCT...CTGTCCTGTTGGTCCATATCTGAAGGAGAAGACATTCAGAAAATCTTGTGATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023917.8 |
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| CDS CCA 72 bp | TGTAAATGGTTGTTTCCCAGGTTTAGTAACGTCAACTaGGTCAAGGTCCTTAGCTCTGGGCATACTTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: CKWLFPRFSNVN*VKVLSSGHTLE Trigger: CTCCAAAGTATGCCCAGAGCTAAGGACCTTGACCCAGTTGACGTTACTAAACCTGGGAAACAACCATTTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS CAA 90 bp | AGATTAGGTAGTTTTTCCAGTGTCGAGGGCATCTTGGTAATCCTCTaGCCATTCAAAGTCAGGATCTTAGTGTTCTTGCCACCCTTCAGT | + |
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Preference number: 6 (lower is better) Translates to: RLGSFSSVEGILVIL*PFKVRILVFLPPFS Trigger: ACTGAAGGGTGGCAAGAACACTAAGATCCTGACTTTGAATGGCAAGAGGATTACCAAGATGCCCTCGACACTGGAAAAACTACCTAATCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS GCA 72 bp | AGACTGATGTCTGGACAGGAATCAGCTTTAGGTTTCTaGTTATCTTCCAGTTCTTCGATGGAGCCACAAAGT | + |
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Preference number: 6 (lower is better) Translates to: RLMSGQESALGF*LSSSSSMEPQS Trigger: ACTTTGTGGCTCCATCGAAGAACTGGAAGATAAGCAGAAACCTAAAGCTGATTCCTGTCCAGACATCAGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS CAA 72 bp | AGTTTTTCCAGTGTCGAGGGCATCTTGGTAATCCTCTaGCCATTCAAAGTCAGGATCTTAGTGTTCTTGCCA | + |
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Preference number: 6 (lower is better) Translates to: SFSSVEGILVIL*PFKVRILVFLP Trigger: TGGCAAGAACACTAAGATCCTGACTTTGAATGGCAAGAGGATTACCAAGATGCCCTCGACACTGGAAAAACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS CAA 90 bp | TCTAGAGTCTTCAGATTAGGTAGTTTTTCCAGTGTCGAGGGCATCTaGGTAATCCTCTTGCCATTCAAAGTCAGGATCTTAGTGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SRVFRLGSFSSVEGI*VILLPFKVRILVFL Trigger: CAAGAACACTAAGATCCTGACTTTGAATGGCAAGAGGATTACCAAGATGCCCTCGACACTGGAAAAACTACCTAATCTGAAGACTCTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS CAA 72 bp | TTCAGATTAGGTAGTTTTTCCAGTGTCGAGGGCATCTaGGTAATCCTCTTGCCATTCAAAGTCAGGATCTTA | + |
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Preference number: 6 (lower is better) Translates to: FRLGSFSSVEGI*VILLPFKVRIL Trigger: TAAGATCCTGACTTTGAATGGCAAGAGGATTACCAAGATGCCCTCGACACTGGAAAAACTACCTAATCTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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| CDS CAA 90 bp | AGGGAGGTAAGATATTTTATCTCTTCAGGAACTTCTTGTAAATGGTaGTTTCCCAGGTTTAGTAACGTCAACTGGGTCAAGGTCCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: REVRYFISSGTSCKW*FPRFSNVNWVKVLS Trigger: GCTAAGGACCTTGACCCAGTTGACGTTACTAAACCTGGGAAACAACCATTTACAAGAAGTTCCTGAAGAGATAAAATATCTTACCTCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023917.8 ENSMUST00000108276.2 |
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