Pregenerated sensors for LRRC63 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021997Ensembl transcript IDs: ENSMUST00000022574.5
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTTCGTGAGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATaGGTCCCTCCTTGCAGAACCCGTGCTCTAAGAGGTGAATTACTT | + |
|
Preference number: 1 (lower is better) Translates to: FREEEDQRELSREEP*VPPCRTRALRGELL Trigger: AAGTAATTCACCTCTTAGAGCACGGGTTCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCTCACGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR CCA 90 bp | AGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTAGTACCTaGACACATAACTTTGTGGCCTCGTGCAACATAGTTCCCCATAAT | + |
|
Preference number: 1 (lower is better) Translates to: SRLALRRVHELTFST*THNFVASCNIVPHN Trigger: ATTATGGGGAACTATGTTGCACGAGGCCACAAAGTTATGTGTCCAGGTACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR GCA 90 bp | GAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTaGAGAACCCGTGCTCTAAGAGGTGAATTACTTATACAGAAATAT | + |
|
Preference number: 1 (lower is better) Translates to: EDQRELSREEPWVPP*RTRALRGELLIQKY Trigger: ATATTTCTGTATAAGTAATTCACCTCTTAGAGCACGGGTTCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR-3UTR TCA 90 bp | TTCTCCAGGAACTTCTCAAGGTCCCTACTGAACTCCAAAGGCCTTTCCTACTCCCCGTGCTCTAAGAGGTaGATTACTTATACAGAAATA | + |
|
Preference number: 2 (lower is better) Translates to: FSRNFSRSLLNSKGLSYSPCSKR*ITYTEI Trigger: TATTTCTGTATAAGTAATTCACCTCTTAGAGCACGG...GGAGTAGGAAAGGCCTTTGGAGTTCAGTAGGGACCTTGAGAAGTTCCTGGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR CAA 90 bp | TTGCAATTAATCTTTTATTCTCAGAAGAAAACCAGCCGGTTGGCATaGAGGAGGGTGCACGAGCTAACATTTAGTACCTGGACACATAAC | + |
|
Preference number: 2 (lower is better) Translates to: LQLIFYSQKKTSRLA*RRVHELTFSTWTHN Trigger: GTTATGTGTCCAGGTACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGAATAAAAGATTAATTGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR-3UTR CAA 90 bp | TTCTCCAGGAACTTCTCAAGGTCCCTACTGAACTCCAAAGGCCTTTCCTACTCCACCATGGGTCCCTCCTaGCAGAACCCGTGCTCTAAG | + |
|
Preference number: 3 (lower is better) Translates to: FSRNFSRSLLNSKGLSYSTMGPS*QNPCSK Trigger: CTTAGAGCACGGGTTCTGCAAGGAGGGACCCATGGT...GGAGTAGGAAAGGCCTTTGGAGTTCAGTAGGGACCTTGAGAAGTTCCTGGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR TCA 72 bp | AGAGCTCAGCACCGATTTCTAACAATCAGGCTTTCGTaGGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGA | + |
|
Preference number: 3 (lower is better) Translates to: RAQHRFLTIRLS*GGGSERTQQRR Trigger: TCTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCTCACGAAAGCCTGATTGTTAGAAATCGGTGCTGAGCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR GCA 72 bp | AGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTaGAGAACCCGTGCTCTAAGAGGTGAATTACTTATA | + |
|
Preference number: 3 (lower is better) Translates to: RELSREEPWVPP*RTRALRGELLI Trigger: TATAAGTAATTCACCTCTTAGAGCACGGGTTCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| 3UTR CCA 72 bp | GCATTGAGGAGGGTGCACGAGCTAACATTTAGTACCTaGACACATAACTTTGTGGCCTCGTGCAACATAGTT | + |
|
Preference number: 3 (lower is better) Translates to: ALRRVHELTFST*THNFVASCNIV Trigger: AACTATGTTGCACGAGGCCACAAAGTTATGTGTCCAGGTACTAAATGTTAGCTCGTGCACCCTCCTCAATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | GGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGAACCCGGTTCTGGTGGTTCTCTaGACAGTTTCAGGCGGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: GSERTQQRRTMGPSLQNPVLVVL*TVSGGL Trigger: CAAACCGCCTGAAACTGTTCAGAGAACCACCAGAAC...CGGGTTCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | GAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGATTTGGCAATTTATTATaGCCAGGGTGGTCAGCGCCA | + |
|
Preference number: 4 (lower is better) Translates to: EEDQRELSREEPWVPPCRFGNLL*PGWSAP Trigger: TGGCGCTGACCACCCTGGCCATAATAAATTGCCAAA...TCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | GGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGAACCCGCCAAACTTGGGACCATaGCACCAATCACATTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: GSERTQQRRTMGPSLQNPPNLGP*HQSHSD Trigger: ATCTGAATGTGATTGGTGCCATGGTCCCAAGTTTGG...CGGGTTCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | AGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGGCCTATTGTTCTGGTaGTTCTCTGAACAGTTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: RRRIRENSAEKNHGSLLAGLLFW*FSEQFQ Trigger: CTGAAACTGTTCAGAGAACCACCAGAACAATAGGCC...TGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | GAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGAAGAGTAAGAAGTGGGTaGAGGTTTGGAAAACTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: EEDQRELSREEPWVPPCRRVRSG*RFGKLL Trigger: AAGGAGTTTTCCAAACCTTCACCCACTTCTTACTCT...TCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | TCTAACAATCAGGCTTTCGTGAGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGCCCTCTTTACATCTCTaGGAAGAGGGAGCTCTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: SNNQAFVRRRIRENSAEKPSLHL*EEGALD Trigger: GTCAAGAGCTCCCTCTTCTCAGAGATGTAAAGAGGG...CTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCTCACGAAAGCCTGATTGTTAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | TTTTATTCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTATATCGCAGGATCGGATaGTGCGGAAACCTTCACCAA | + |
|
Preference number: 4 (lower is better) Translates to: FYSQKKTSRLALRRVHELYRRIG*CGNLHQ Trigger: TTGGTGAAGGTTTCCGCATCATCCGATCCTGCGATA...TAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGAATAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR GCA 90 bp | TTCTCCAGGAACTTCTCAAGGTCCCTACTGAACTCCAAAGGCCTTTCCTACTCCAGAAGTAGTGGATGCTaGTGGGTTTTGAGTGAGCGA | + |
|
Preference number: 4 (lower is better) Translates to: FSRNFSRSLLNSKGLSYSRSSGC*WVLSER Trigger: TCGCTCACTCAAAACCCAGCAGCATCCACTACTTCT...GGAGTAGGAAAGGCCTTTGGAGTTCAGTAGGGACCTTGAGAAGTTCCTGGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR GCA 90 bp | TTCTCCAGGAACTTCTCAAGGTCCCTACTGAACTCCAAAGGCCTTTCCTACTCCTGTTTCAGAGCGTGTTaGTGCAACAGCCTTAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: FSRNFSRSLLNSKGLSYSCFRAC*CNSLKA Trigger: GGCTTTAAGGCTGTTGCAGCAACACGCTCTGAAACA...GGAGTAGGAAAGGCCTTTGGAGTTCAGTAGGGACCTTGAGAAGTTCCTGGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | TTTTATTCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTACGGCGAACACGGTGTTaGTGTGGAAAAATGTTAACC | + |
|
Preference number: 4 (lower is better) Translates to: FYSQKKTSRLALRRVHELRRTRC*CGKMLT Trigger: GGTTAACATTTTTCCACATCAACACCGTGTTCGCCG...TAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGAATAAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | TTGGCATTGAGGAGGGTGCACGAGCTAACATTTAGTACCTGGACACATAACTTTTTTGGGACCTTCCAGTaGAAACGGCGAACACGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: LALRRVHELTFSTWTHNFFGTFQ*KRRTRC Trigger: ACACCGTGTTCGCCGTTTTCACTGGAAGGTCCCAAA...AAAGTTATGTGTCCAGGTACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAA 48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | TCTAACAATCAGGCTTTCGTGAGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGGTTTCAGGCGGTTTGTaGGCTTCTGTTTTTCCACTC | + |
|
Preference number: 4 (lower is better) Translates to: SNNQAFVRRRIRENSAEKVSGGL*ASVFPL Trigger: GAGTGGAAAAACAGAAGCCCACAAACCGCCTGAAAC...CTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCTCACGAAAGCCTGATTGTTAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | TCTAACAATCAGGCTTTCGTGAGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCTTCACCAAACTTaGGACCATGGCACCAATCAC | + |
|
Preference number: 4 (lower is better) Translates to: SNNQAFVRRRIRENSAEKNLHQT*DHGTNH Trigger: GTGATTGGTGCCATGGTCCCAAGTTTGGTGAAGGTT...CTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCTCACGAAAGCCTGATTGTTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | TTTTATTCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTATCAAGACAGATGGTTTaGGTGCTGGTAGGTCTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: FYSQKKTSRLALRRVHELSRQMV*VLVGLC Trigger: ACAAAGACCTACCAGCACTCAAACCATCTGTCTTGA...TAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGAATAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | GAAGAACCATGGGTCCCTCCTTGCAGAACCCGTGCTCTAAGAGGTGAATTACTTAACAAGGAGCAAATTTaGGTAAGTTGTTGGGGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EEPWVPPCRTRALRGELLNKEQI*VSCWGS Trigger: TGACCCCCAACAACTTACTCAAATTTGCTCCTTGTT...AAGTAATTCACCTCTTAGAGCACGGGTTCTGCAAGGAGGGACCCATGGTTCTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | TCTAACAATCAGGCTTTCGTGAGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGGATACCCATCTTCTTTaGCTTCCTTTTTCGAGGACT | + |
|
Preference number: 4 (lower is better) Translates to: SNNQAFVRRRIRENSAEKDTHLL*LPFSRT Trigger: AGTCCTCGAAAAAGGAAGTCAAAGAAGATGGGTATC...CTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCTCACGAAAGCCTGATTGTTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | CGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTAGTACCTGGACACATAACAAGTGGGTGAAGGTTTaGAAAACTCCTTGGAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: RLALRRVHELTFSTWTHNKWVKV*KTPWKE Trigger: TTCTTTCCAAGGAGTTTTCCAAACCTTCACCCACTT...GTTATGTGTCCAGGTACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR TCA 90 bp | CGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTAGTACCTGGACACATAACTTAAGGTATACCAATTaGAAAGCCACAGGTGTTAAG | + |
|
Preference number: 4 (lower is better) Translates to: RLALRRVHELTFSTWTHNLRYTN*KATGVK Trigger: CTTAACACCTGTGGCTTTTCAATTGGTATACCTTAA...GTTATGTGTCCAGGTACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CCA 90 bp | TCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTAACACGGTGTTGATGTaGAAAAATGTTAACCACTCT | + |
|
Preference number: 4 (lower is better) Translates to: SQKKTSRLALRRVHELTFNTVLM*KNVNHS Trigger: AGAGTGGTTAACATTTTTCCACATCAACACCGTGTT...AAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | AGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGTCTTAGAGGTTTTCTaGGCAAAACAGGCGTTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: RRRIRENSAEKNHGSLLAVLEVF*AKQALA Trigger: TGCCAACGCCTGTTTTGCCAAGAAAACCTCTAAGAC...TGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | TCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTGGGCATCTGGGCCTATaGTTCTGGTGGTTCTCTGAA | + |
|
Preference number: 5 (lower is better) Translates to: SQKKTSRLALRRVHELTFGHLGL*FWWFSE Trigger: TTCAGAGAACCACCAGAACAATAGGCCCAGATGCCC...AAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | GAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGAAAACCTTCACCAAACTaGGGACCATGGCACCAATCA | + |
|
Preference number: 5 (lower is better) Translates to: EEDQRELSREEPWVPPCRKPSPN*GPWHQS Trigger: TGATTGGTGCCATGGTCCCAAGTTTGGTGAAGGTTT...TCTGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | TTTTATTCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAAACCAGCGGTGCTCTTaGGGACCTTCCAGTGAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: FYSQKKTSRLALRRVHELNQRCS*GPSSEN Trigger: GTTTTCACTGGAAGGTCCCAAAGAGCACCGCTGGTT...TAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGAATAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | AGGAGGAGGATCAGAGAGAACTCAGCAGAGAAGAACCATGGGTCCCTCCTTGCAGAACAAGGAGCAAATTaGAGTAAGTTGTTGGGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: RRRIRENSAEKNHGSLLAEQGAN*SKLLGV Trigger: GACCCCCAACAACTTACTCAAATTTGCTCCTTGTTC...TGCAAGGAGGGACCCATGGTTCTTCTCTGCTGAGTTCTCTCTGATCCTCCTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS TCA 90 bp | CCGATAGCAAGTAGAGGAGCAGACATGGAACATAATGGGGACATGTaGTACTCCAAAGATATCGCAGGATCGGATGATGCGGAAACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PIASRGADMEHNGDM*YSKDIAGSDDAETF Trigger: GAAGGTTTCCGCATCATCCGATCCTGCGATATCTTTGGAGTATCACATGTCCCCATTATGTTCCATGTCTGCTCCTCTACTTGCTATCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 90 bp | TCGCAGGATCGGATGATGCGGAAACCTTCACCAAACTTGGGACCATaGCACCAATCACATTCAGATGTGCTTTTAAGAGACTTCCGAACT | + |
|
Preference number: 5 (lower is better) Translates to: SQDRMMRKPSPNLGP*HQSHSDVLLRDFRT Trigger: AGTTCGGAAGTCTCTTAAAAGCACATCTGAATGTGATTGGTGCCATGGTCCCAAGTTTGGTGAAGGTTTCCGCATCATCCGATCCTGCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | CAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTAGTACGGCGAACACGGTGTaGATGTGGAAAAATGTTAAC | + |
|
Preference number: 5 (lower is better) Translates to: QKKTSRLALRRVHELTFSTANTV*MWKNVN Trigger: GTTAACATTTTTCCACATCAACACCGTGTTCGCCGT...ACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | CAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAACATTTAGTGCAAATTTGAGTAAGTaGTTGGGGGTCATTCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: QKKTSRLALRRVHELTFSANLSK*LGVIPG Trigger: TCCTGGAATGACCCCCAACAACTTACTCAAATTTGC...ACTAAATGTTAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | TTTTATTCTCAGAAGAAAACCAGCCGGTTGGCATTGAGGAGGGTGCACGAGCTAGAGACATTGCTGACTTaGCTCTCTTTTACCCAGTCC | + |
|
Preference number: 5 (lower is better) Translates to: FYSQKKTSRLALRRVHELETLLT*LSFTQS Trigger: GGACTGGGTAAAAGAGAGCAAAGTCAGCAATGTCTC...TAGCTCGTGCACCCTCCTCAATGCCAACCGGCTGGTTTTCTTCTGAGAATAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 90 bp | GCTCTTTGGGACCTTCCAGTGAAAACGGCGAACACGGTGTTGATGTaGAAAAATGTTAACCACTCTTTCGAGTGCCTTATGGTCATAGTC | + |
|
Preference number: 5 (lower is better) Translates to: ALWDLPVKTANTVLM*KNVNHSFECLMVIV Trigger: GACTATGACCATAAGGCACTCGAAAGAGTGGTTAACATTTTTCCACATCAACACCGTGTTCGCCGTTTTCACTGGAAGGTCCCAAAGAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | TTCTCCAGGAACTTCTCAAGGTCCCTACTGAACTCCAAAGGCCTTTCCTACTCCAGATACCCATCTTCTTaGACTTCCTTTTTCGAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: FSRNFSRSLLNSKGLSYSRYPSS*TSFFED Trigger: GTCCTCGAAAAAGGAAGTCAAAGAAGATGGGTATCT...GGAGTAGGAAAGGCCTTTGGAGTTCAGTAGGGACCTTGAGAAGTTCCTGGAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS-3UTR CAA 90 bp | GAAGAACCATGGGTCCCTCCTTGCAGAACCCGTGCTCTAAGAGGTGAATTACTTGGTTTGGAAAACTCCTaGGAAAGAACTAAAGTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: EEPWVPPCRTRALRGELLGLENS*ERTKVL Trigger: TAACACTTTAGTTCTTTCCAAGGAGTTTTCCAAACC...AAGTAATTCACCTCTTAGAGCACGGGTTCTGCAAGGAGGGACCCATGGTTCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 90 bp | GCTAGAAAGAATCCCTTAAGATTAAGTGCATTTCTTCCATATATTTaGCAATTTATTATGGCCAGGGTGGTCAGCGCCAGTACTGTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: ARKNPLRLSAFLPYI*QFIMARVVSASTVS Trigger: TGAAACAGTACTGGCGCTGACCACCCTGGCCATAATAAATTGCCAAATATATGGAAGAAATGCACTTAATCTTAAGGGATTCTTTCTAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 90 bp | CCAATCACATTCAGATGTGCTTTTAAGAGACTTCCGAACTGCATCTaGGATGTAATCCAACAGTTTATTTTTAACAAGGAACAAGGAGCA | + |
|
Preference number: 5 (lower is better) Translates to: PITFRCAFKRLPNCI*DVIQQFIFNKEQGA Trigger: TGCTCCTTGTTCCTTGTTAAAAATAAACTGTTGGATTACATCCCAGATGCAGTTCGGAAGTCTCTTAAAAGCACATCTGAATGTGATTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS TCA 72 bp | CAAAACAGGCGTTGGCAGAGAACGGGCTGGCGGGAGTaGGCCAGTGTTCAGTACCACTTTACTTGGGGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: QNRRWQRTGWRE*ASVQYHFTWGC Trigger: GCAGCCCCAAGTAAAGTGGTACTGAACACTGGCTCACTCCCGCCAGCCCGTTCTCTGCCAACGCCTGTTTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CAA 72 bp | AGCCTTCCCCTCGTAAGACATGGGCATCTGGGCCTATaGTTCTGGTGGTTCTCTGAACAGTTTCAGGCGGTT | + |
|
Preference number: 6 (lower is better) Translates to: SLPLVRHGHLGL*FWWFSEQFQAV Trigger: AACCGCCTGAAACTGTTCAGAGAACCACCAGAACAATAGGCCCAGATGCCCATGTCTTACGAGGGGAAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 72 bp | CTCGTAAGACATGGGCATCTGGGCCTATTGTTCTGGTaGTTCTCTGAACAGTTTCAGGCGGTTTGTGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: LVRHGHLGLLFW*FSEQFQAVCGL Trigger: AAGCCCACAAACCGCCTGAAACTGTTCAGAGAACCACCAGAACAATAGGCCCAGATGCCCATGTCTTACGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS TCA 72 bp | GGACATGTGATACTCCAAAGATATCGCAGGATCGGATaGTGCGGAAACCTTCACCAAACTTGGGACCATGGC | + |
|
Preference number: 6 (lower is better) Translates to: GHVILQRYRRIG*CGNLHQTWDHG Trigger: GCCATGGTCCCAAGTTTGGTGAAGGTTTCCGCATCATCCGATCCTGCGATATCTTTGGAGTATCACATGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CAA 72 bp | TCGCAGGATCGGATGATGCGGAAACCTTCACCAAACTaGGGACCATGGCACCAATCACATTCAGATGTGCTT | + |
|
Preference number: 6 (lower is better) Translates to: SQDRMMRKPSPN*GPWHQSHSDVL Trigger: AAGCACATCTGAATGTGATTGGTGCCATGGTCCCAAGTTTGGTGAAGGTTTCCGCATCATCCGATCCTGCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CAA 90 bp | CCAAAGATATCGCAGGATCGGATGATGCGGAAACCTTCACCAAACTaGGGACCATGGCACCAATCACATTCAGATGTGCTTTTAAGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: PKISQDRMMRKPSPN*GPWHQSHSDVLLRD Trigger: GTCTCTTAAAAGCACATCTGAATGTGATTGGTGCCATGGTCCCAAGTTTGGTGAAGGTTTCCGCATCATCCGATCCTGCGATATCTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS TCA 72 bp | AGTAGAGGAGCAGACATGGAACATAATGGGGACATGTaGTACTCCAAAGATATCGCAGGATCGGATGATGCG | + |
|
Preference number: 6 (lower is better) Translates to: SRGADMEHNGDM*YSKDIAGSDDA Trigger: CGCATCATCCGATCCTGCGATATCTTTGGAGTATCACATGTCCCCATTATGTTCCATGTCTGCTCCTCTACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 72 bp | CGGATGATGCGGAAACCTTCACCAAACTTGGGACCATaGCACCAATCACATTCAGATGTGCTTTTAAGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: RMMRKPSPNLGP*HQSHSDVLLRD Trigger: GTCTCTTAAAAGCACATCTGAATGTGATTGGTGCCATGGTCCCAAGTTTGGTGAAGGTTTCCGCATCATCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CAA 72 bp | CTTTGGGACCTTCCAGTGAAAACGGCGAACACGGTGTaGATGTGGAAAAATGTTAACCACTCTTTCGAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: LWDLPVKTANTV*MWKNVNHSFEC Trigger: GCACTCGAAAGAGTGGTTAACATTTTTCCACATCAACACCGTGTTCGCCGTTTTCACTGGAAGGTCCCAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CCA 72 bp | TTCTTCCATATATTTGGCAATTTATTATGGCCAGGGTaGTCAGCGCCAGTACTGTTTCAGAGCGTGTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: FFHIFGNLLWPG*SAPVLFQSVLL Trigger: CAGCAACACGCTCTGAAACAGTACTGGCGCTGACCACCCTGGCCATAATAAATTGCCAAATATATGGAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CAA 72 bp | GAATCCCTTAAGATTAAGTGCATTTCTTCCATATATTaGGCAATTTATTATGGCCAGGGTGGTCAGCGCCAG | + |
|
Preference number: 6 (lower is better) Translates to: ESLKIKCISSIY*AIYYGQGGQRQ Trigger: CTGGCGCTGACCACCCTGGCCATAATAAATTGCCAAATATATGGAAGAAATGCACTTAATCTTAAGGGATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||
| CDS CAA 72 bp | GTGTTAAATGTCTTTTTAGTGAGATACCCATCTTCTTaGACTTCCTTTTTCGAGGACTTCTTGGCTCTTTTT | + |
|
Preference number: 6 (lower is better) Translates to: VLNVFLVRYPSS*TSFFEDFLALF Trigger: AAAAAGAGCCAAGAAGTCCTCGAAAAAGGAAGTCAAAGAAGATGGGTATCTCACTAAAAAGACATTTAACAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022574.5 |
||