Pregenerated sensors for LRRC6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022375Ensembl transcript IDs: ENSMUST00000023006.7
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTAGCAACATGAGTCTGTaGGTCAGGGTCAATGACAAC | + |
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Preference number: 2 (lower is better) Translates to: PAESLYSVTQQESKYRKSSNMSL*VRVNDN Trigger: GTTGTCATTGACCCTGACCCACAGACTCATGTTGCT...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| 3UTR-3UTR TCA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAATGTTTACTCCATGAATaGCACATAGCCACTGTCAAC | + |
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Preference number: 2 (lower is better) Translates to: CQGIFVRPESTVLTSEFECLLHE*HIATVN Trigger: GTTGACAGTGGCTATGTGTCATTCATGGAGTAAACA...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| 3UTR TCA 72 bp | GGTAAAAATGATAATGAACTATGTTTACTCCATGAATaGCACATAGCCACTGTCAACACCAAGCAACATGAG | + |
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Preference number: 3 (lower is better) Translates to: GKNDNELCLLHE*HIATVNTKQHE Trigger: CTCATGTTGCTTGGTGTTGACAGTGGCTATGTGTCATTCATGGAGTAAACATAGTTCATTATCATTTTTACC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR GCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATCTCCTACCTTGGGCATaGAGATCAGCAAATGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYLLPWA*RSANVL Trigger: CAGGACATTTGCTGATCTGCATGCCCAAGGTAGGAG...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATCTTTCTCCTGCTCTCTaGTTTGCTGCTCAACTGATG | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYLSPAL*FAAQLM Trigger: CATCAGTTGAGCAGCAAATCAGAGAGCAGGAGAAAG...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR GCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATATGTCTGTGTACCAATaGCCATCAAAGCCTGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYMSVYQ*PSKPVL Trigger: CAGCACAGGCTTTGATGGGCATTGGTACACAGACAT...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATAGTCTTGGTTTTCTGTaGCAGATGGGCAAGCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYSLGFL*QMGKQC Trigger: ACACTGCTTGCCCATCTGCCACAGAAAACCAAGACT...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATCTCTTCTTGAGTTTCTaGTACCTGGGGGTAGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYLFLSF*YLGVVL Trigger: CAAGACTACCCCCAGGTACCAGAAACTCAAGAAGAG...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATCAAGTTTGGCTTCGTTaGCATTCAGGACTTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYQVWLR*HSGLSH Trigger: ATGGGAAAGTCCTGAATGTCAACGAAGCCAAACTTG...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATGTAGAAAGGGCAAGTTaGAATGGCTTTCCTTTGACC | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYVERAS*NGFPLT Trigger: GGTCAAAGGAAAGCCATTTCAACTTGCCCTTTCTAC...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATAAATGTCCTGTTGTCTaGGACCTTTTAGCAGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYKCPVV*DLLAEL Trigger: CAGCTCTGCTAAAAGGTCCCAGACAACAGGACATTT...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATAGGTCCAGGATGATCTaGTTGTGTTTCTCATCATCT | + |
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Preference number: 4 (lower is better) Translates to: TPSNMSLWVRVNDNTASYRSRMI*LCFSSS Trigger: AGATGATGAGAAACACAATCAGATCATCCTGGACCT...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAATTGTGTTGCTCTTCTTaGGTTTCTGGTACCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: CQGIFVRPESTVLTSEFELCCSS*VSGTWG Trigger: CCCCCAGGTACCAGAAACTCAAGAAGAGCAACACAA...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR GCA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAACAGGGCAAGAATGCTTaGTGGGGTCAACTTCCAATC | + |
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Preference number: 4 (lower is better) Translates to: CQGIFVRPESTVLTSEFEQGKNA*WGQLPI Trigger: GATTGGAAGTTGACCCCAGCAAGCATTCTTGCCCTG...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAAGATGGGCAAGCAGTGTaGATGTCTGTGTACCAATGC | + |
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Preference number: 4 (lower is better) Translates to: CQGIFVRPESTVLTSEFEDGQAV*MSVYQC Trigger: GCATTGGTACACAGACATCCACACTGCTTGCCCATC...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAATGGTTTTCACAGACGTaGGTGTTCGTTGACCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: CQGIFVRPESTVLTSEFEWFSQT*VFVDLL Trigger: CAGGAGGTCAACGAACACCCACGTCTGTGAAAACCA...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAATCCTCGAGTTTCCTCTaGGCTTCCTCTTTCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: CQGIFVRPESTVLTSEFESSSFL*ASSFSL Trigger: CAAAGAGAAAGAGGAAGCTCAGAGGAAACTCGAGGA...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTGTTTTCTGTGGCAGATaGGCAAGCAGTGTGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSVFCGR*ASSVDV Trigger: GACATCCACACTGCTTGCCCATCTGCCACAGAAAAC...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTCACATGGGTTACCCATaGGGAACAACTCCTTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSHMGYP*GTTPSD Trigger: ATCTGAAGGAGTTGTTCCTCATGGGTAACCCATGTG...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTTTCCCTGCTACTAGTTaGGGTGGTTTTCACAGACGT | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSFPATS*GGFHRR Trigger: ACGTCTGTGAAAACCACCTCAACTAGTAGCAGGGAA...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTCTTTCTATTTCTTGCTaGTGCAAGGAGAGTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSLSISC*CKESSS Trigger: GGAGGAACTCTCCTTGCATCAGCAAGAAATAGAAAG...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTGGCAAGAATGCTTGCTaGGGTCAACTTCCAATCTTT | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSGKNAC*GQLPIF Trigger: AAAGATTGGAAGTTGACCCCAGCAAGCATTCTTGCC...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTTACTCGAACGTAAGTTaGCTGCACATCAACCTCAAT | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSYSNVS*LHINLN Trigger: ATTGAGGTTGATGTGCAGCCAACTTACGTTCGAGTA...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTAACAACTCCTTCAGATaGATATTGTGTGTCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSNNSFR*ILCVRV Trigger: AACCCTGACACACAATATTCATCTGAAGGAGTTGTT...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTAAGGGCAAGTTGAAATaGCTTTCCTTTGACCATTAC | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSKGKLK*LSFDHY Trigger: GTAATGGTCAAAGGAAAGCCATTTCAACTTGCCCTT...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR TCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTTGCTCAGTTCTCCAATaGAATTTACAGTCAAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSCSVLQ*NLQSSQ Trigger: TTGACTTGACTGTAAATTTCATTGGAGAACTGAGCA...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR GCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTATTACACAGTCATTGTaGTCAGCATTCCGTCTAATA | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSITQSL*SAFRLI Trigger: TATTAGACGGAATGCTGAGCACAATGACTGTGTAAT...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR GCA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTAACGCTCTATTTCTTTaGCATCCAACCACTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: PAESLYSVTQQESKYRKSNALFL*HPTTLT Trigger: AGTTAAAGTGGTTGGATGGCAAAGAAATAGAGCGTT...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 90 bp | GCTCTTCTTGAGTTTCTGGTACCTGGGGGTAGTCTTGGTTTTCTGTaGCAGATGGGCAAGCAGTGTGGATGTCTGTGTACCAATGCCCAT | + |
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Preference number: 5 (lower is better) Translates to: ALLEFLVPGGSLGFL*QMGKQCGCLCTNAH Trigger: ATGGGCATTGGTACACAGACATCCACACTGCTTGCCCATCTGCCACAGAAAACCAAGACTACCCCCAGGTACCAGAAACTCAAGAAGAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 90 bp | AGAGCTGCGGTCAGGCTGGACCTCTGTAGAAAGGGCAAGTTGAAATaGCTTTCCTTTGACCATTACTCGAACGTAAGTTGGCTGCACATC | + |
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Preference number: 5 (lower is better) Translates to: RAAVRLDLCRKGKLK*LSFDHYSNVSWLHI Trigger: GATGTGCAGCCAACTTACGTTCGAGTAATGGTCAAAGGAAAGCCATTTCAACTTGCCCTTTCTACAGAGGTCCAGCCTGACCGCAGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 90 bp | GTGGAGGCACTTCTGGGTTATCCTCAAAGTCTGGATCTTCCTCACTaGGTTCATCTCGGGGTTGAGATTCCATTCTTTTGGGTCTGTGTC | + |
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Preference number: 5 (lower is better) Translates to: VEALLGYPQSLDLPH*VHLGVEIPFFWVCV Trigger: GACACAGACCCAAAAGAATGGAATCTCAACCCCGAGATGAACCCAGTGAGGAAGATCCAGACTTTGAGGATAACCCAGAAGTGCCTCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CAA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATTTACTCGAACGTAAGTaGGCTGCACATCAACCTCAA | + |
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Preference number: 5 (lower is better) Translates to: TPSNMSLWVRVNDNTASYLLERK*AAHQPQ Trigger: TTGAGGTTGATGTGCAGCCAACTTACGTTCGAGTAA...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CAA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATATCATTTCTCCTACCTaGGGCATGCAGATCAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: TPSNMSLWVRVNDNTASYIISPT*GMQISK Trigger: TTTGCTGATCTGCATGCCCAAGGTAGGAGAAATGAT...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS TCA 90 bp | TCTAAGGCAGTAAGCTTTCTCCTGCTCTCTGATTTGCTGCTCAACTaGTGTGTAGTTCTGCAATGCCTGGATCCTTTCAGAACGCTCTAT | + |
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Preference number: 5 (lower is better) Translates to: SKAVSFLLLSDLLLN*CVVLQCLDPFRTLY Trigger: ATAGAGCGTTCTGAAAGGATCCAGGCATTGCAGAACTACACATCAGTTGAGCAGCAAATCAGAGAGCAGGAGAAAGCTTACTGCCTTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CAA 90 bp | ACACCAAGCAACATGAGTCTGTGGGTCAGGGTCAATGACAACACAGCCTCCTATTCTGTGTCTTTTCTCTaGTACTATGGTAGACACATC | + |
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Preference number: 5 (lower is better) Translates to: TPSNMSLWVRVNDNTASYSVSFL*YYGRHI Trigger: GATGTGTCTACCATAGTACAAGAGAAAAGACACAGA...ATAGGAGGCTGTGTTGTCATTGACCCTGACCCACAGACTCATGTTGCTTGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS GCA 90 bp | TGTAGTTCTGCAATGCCTGGATCCTTTCAGAACGCTCTATTTCTTTaGCATCCAACCACTTTAACTGTTGTAAGGTCACCACCACAAACT | + |
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Preference number: 5 (lower is better) Translates to: CSSAMPGSFQNALFL*HPTTLTVVRSPPQT Trigger: AGTTTGTGGTGGTGACCTTACAACAGTTAAAGTGGTTGGATGGCAAAGAAATAGAGCGTTCTGAAAGGATCCAGGCATTGCAGAACTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 90 bp | GGCAAGTTGAAATGGCTTTCCTTTGACCATTACTCGAACGTAAGTTaGCTGCACATCAACCTCAATCAAAGAGGTATCCATGTACCTATA | + |
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Preference number: 5 (lower is better) Translates to: GKLKWLSFDHYSNVS*LHINLNQRGIHVPI Trigger: TATAGGTACATGGATACCTCTTTGATTGAGGTTGATGTGCAGCCAACTTACGTTCGAGTAATGGTCAAAGGAAAGCCATTTCAACTTGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CAA 90 bp | CCAGCTGAAAGTCTTTATTCAGTGACTCAGCAGGAATCTAAATACAGGAAATCTAAGTCCCGGCACCATTaGTCAATATGTTCTAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: PAESLYSVTQQESKYRKSKSRHH*SICSSL Trigger: AAGGCTAGAACATATTGACAAATGGTGCCGGGACTT...AGATTTCCTGTATTTAGATTCCTGCTGAGTCACTGAATAAAGACTTTCAGCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS-3UTR CAA 90 bp | TGTCAGGGCATTTTCGTTCGACCTGAGAGTACAGTTTTAACTTCTGAGTTTGAAGAACGCTCTATTTCTTaGCCATCCAACCACTTTAAC | + |
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Preference number: 5 (lower is better) Translates to: CQGIFVRPESTVLTSEFEERSIS*PSNHFN Trigger: GTTAAAGTGGTTGGATGGCAAAGAAATAGAGCGTTC...TTCAAACTCAGAAGTTAAAACTGTACTCTCAGGTCGAACGAAAATGCCCTGACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS TCA 90 bp | CAATCAAAGAGGTATCCATGTACCTATAGACAGCCAGGTCCAGGATaGTCTGATTGTGTTTCTCATCATCTTTCAAAGAGAAATCAAGTT | + |
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Preference number: 5 (lower is better) Translates to: QSKRYPCTYRQPGPG*SDCVSHHLSKRNQV Trigger: AACTTGATTTCTCTTTGAAAGATGATGAGAAACACAATCAGATCATCCTGGACCTGGCTGTCTATAGGTACATGGATACCTCTTTGATTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 72 bp | ACCTTGGGCATGCAGATCAGCAAATGTCCTGTTGTCTaGGACCTTTTAGCAGAGCTGCGGTCAGGCTGGACC | + |
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Preference number: 6 (lower is better) Translates to: TLGMQISKCPVV*DLLAELRSGWT Trigger: GGTCCAGCCTGACCGCAGCTCTGCTAAAAGGTCCCAGACAACAGGACATTTGCTGATCTGCATGCCCAAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 72 bp | GAGTTTCTGGTACCTGGGGGTAGTCTTGGTTTTCTGTaGCAGATGGGCAAGCAGTGTGGATGTCTGTGTACC | + |
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Preference number: 6 (lower is better) Translates to: EFLVPGGSLGFL*QMGKQCGCLCT Trigger: GGTACACAGACATCCACACTGCTTGCCCATCTGCCACAGAAAACCAAGACTACCCCCAGGTACCAGAAACTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 72 bp | TTGCTCTTCTTGAGTTTCTGGTACCTGGGGGTAGTCTaGGTTTTCTGTGGCAGATGGGCAAGCAGTGTGGAT | + |
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Preference number: 6 (lower is better) Translates to: LLFLSFWYLGVV*VFCGRWASSVD Trigger: ATCCACACTGCTTGCCCATCTGCCACAGAAAACCAAGACTACCCCCAGGTACCAGAAACTCAAGAAGAGCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 90 bp | TGTGTTGTGTTGCTCTTCTTGAGTTTCTGGTACCTGGGGGTAGTCTaGGTTTTCTGTGGCAGATGGGCAAGCAGTGTGGATGTCTGTGTA | + |
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Preference number: 6 (lower is better) Translates to: CVVLLFLSFWYLGVV*VFCGRWASSVDVCV Trigger: TACACAGACATCCACACTGCTTGCCCATCTGCCACAGAAAACCAAGACTACCCCCAGGTACCAGAAACTCAAGAAGAGCAACACAACACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 72 bp | GTCAGGCTGGACCTCTGTAGAAAGGGCAAGTTGAAATaGCTTTCCTTTGACCATTACTCGAACGTAAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: VRLDLCRKGKLK*LSFDHYSNVSW Trigger: CCAACTTACGTTCGAGTAATGGTCAAAGGAAAGCCATTTCAACTTGCCCTTTCTACAGAGGTCCAGCCTGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 72 bp | CTTCTGGGTTATCCTCAAAGTCTGGATCTTCCTCACTaGGTTCATCTCGGGGTTGAGATTCCATTCTTTTGG | + |
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Preference number: 6 (lower is better) Translates to: LLGYPQSLDLPH*VHLGVEIPFFW Trigger: CCAAAAGAATGGAATCTCAACCCCGAGATGAACCCAGTGAGGAAGATCCAGACTTTGAGGATAACCCAGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS TCA 72 bp | GTAAGCTTTCTCCTGCTCTCTGATTTGCTGCTCAACTaGTGTGTAGTTCTGCAATGCCTGGATCCTTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: VSFLLLSDLLLN*CVVLQCLDPFR Trigger: TCTGAAAGGATCCAGGCATTGCAGAACTACACATCAGTTGAGCAGCAAATCAGAGAGCAGGAGAAAGCTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS GCA 72 bp | GCAATGCCTGGATCCTTTCAGAACGCTCTATTTCTTTaGCATCCAACCACTTTAACTGTTGTAAGGTCACCA | + |
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Preference number: 6 (lower is better) Translates to: AMPGSFQNALFL*HPTTLTVVRSP Trigger: TGGTGACCTTACAACAGTTAAAGTGGTTGGATGGCAAAGAAATAGAGCGTTCTGAAAGGATCCAGGCATTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 72 bp | TGCAATGCCTGGATCCTTTCAGAACGCTCTATTTCTTaGCCATCCAACCACTTTAACTGTTGTAAGGTCACC | + |
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Preference number: 6 (lower is better) Translates to: CNAWILSERSIS*PSNHFNCCKVT Trigger: GGTGACCTTACAACAGTTAAAGTGGTTGGATGGCAAAGAAATAGAGCGTTCTGAAAGGATCCAGGCATTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 90 bp | GTTTGTTCCAGAATGCCAGATCATCTTCAATGTCATCTGATTCCTTaGTGTTGTGTTGCTCTTCTTGAGTTTCTGGTACCTGGGGGTAGT | + |
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Preference number: 6 (lower is better) Translates to: VCSRMPDHLQCHLIP*CCVALLEFLVPGGS Trigger: ACTACCCCCAGGTACCAGAAACTCAAGAAGAGCAACACAACACAAAGGAATCAGATGACATTGAAGATGATCTGGCATTCTGGAACAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 90 bp | TGTCTGAGAGTTTCCAGTCTAGATTCAGGGGTGAACAAAGACGGTTaGTTCCAGAATGCCAGATCATCTTCAATGTCATCTGATTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: CLRVSSLDSGVNKDG*FQNARSSSMSSDSF Trigger: AAAGGAATCAGATGACATTGAAGATGATCTGGCATTCTGGAACAAACCGTCTTTGTTCACCCCTGAATCTAGACTGGAAACTCTCAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CCA 72 bp | AAATGGCTTTCCTTTGACCATTACTCGAACGTAAGTTaGCTGCACATCAACCTCAATCAAAGAGGTATCCAT | + |
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Preference number: 6 (lower is better) Translates to: KWLSFDHYSNVS*LHINLNQRGIH Trigger: ATGGATACCTCTTTGATTGAGGTTGATGTGCAGCCAACTTACGTTCGAGTAATGGTCAAAGGAAAGCCATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 90 bp | TTGTGTTTCTCATCATCTTTCAAAGAGAAATCAAGTTTGGCTTCGTaGACATTCAGGACTTTCCCATCTTCTGTAATCAAAGTGCGGGGT | + |
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Preference number: 6 (lower is better) Translates to: LCFSSSFKEKSSLAS*TFRTFPSSVIKVRG Trigger: ACCCCGCACTTTGATTACAGAAGATGGGAAAGTCCTGAATGTCAACGAAGCCAAACTTGATTTCTCTTTGAAAGATGATGAGAAACACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 72 bp | TTGTGTTTCTCATCATCTTTCAAAGAGAAATCAAGTTaGGCTTCGTTGACATTCAGGACTTTCCCATCTTCT | + |
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Preference number: 6 (lower is better) Translates to: LCFSSSFKEKSS*ASLTFRTFPSS Trigger: AGAAGATGGGAAAGTCCTGAATGTCAACGAAGCCAAACTTGATTTCTCTTTGAAAGATGATGAGAAACACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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| CDS CAA 72 bp | TCATCATCTTTCAAAGAGAAATCAAGTTTGGCTTCGTaGACATTCAGGACTTTCCCATCTTCTGTAATCAAA | + |
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Preference number: 6 (lower is better) Translates to: SSSFKEKSSLAS*TFRTFPSSVIK Trigger: TTTGATTACAGAAGATGGGAAAGTCCTGAATGTCAACGAAGCCAAACTTGATTTCTCTTTGAAAGATGATGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023006.7 |
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