Pregenerated sensors for LRRC46 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020878Ensembl transcript IDs: ENSMUST00000021251.7
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGGCAGGGGCAGGTCTGTaGGGACAGGCTGTGTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCAAGAGL*GQAVSP Trigger: TGGAGACACAGCCTGTCCTCACAGACCTGCCCCTGC...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCCTGGGGGTTGCAGCCTaGGAGGTCTTGGAGGTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGLGVAA*EVLEVV Trigger: CACAACCTCCAAGACCTCTCAGGCTGCAACCCCCAG...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGCCTGCTCCAAGTCCTTaGAGAATCCTCGCTCTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCAPAPSP*RILALR Trigger: GCGCAGAGCGAGGATTCTTCAAGGACTTGGAGCAGG...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGGTGCTGCCTGCTGCCTaGGTTCCTGATGCTGATGCA | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCAVLPAA*VPDADA Trigger: TGCATCAGCATCAGGAACGCAGGCAGCAGGCAGCAC...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCCAAGTGCTCTGTCAGTaGTGCCTGCTGCCTGCGTTC | + |
|
Preference number: 4 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGQVLCQ*CLLPAF Trigger: GAACGCAGGCAGCAGGCAGCACTGACAGAGCACTTG...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGGACTCCTTCCCAGGCTaGTCAGTGGCAGTAGAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCADSFPG*SVAVEL Trigger: CAGCTCTACTGCCACTGACCAGCCTGGGAAGGAGTC...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGAGAGGCAGTCTGAGTTaGGGAGGTAGCTTTAGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCARGSLS*GGSFRG Trigger: GCCCCTAAAGCTACCTCCTCAACTCAGACTGCCTCT...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCCTGTGTCTCCATCCTTaGCAAGTGCTCTGTCAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGLCLHP*QVLCQC Trigger: GCACTGACAGAGCACTTGTCAAGGATGGAGACACAG...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTTGTCATGCTGGGGGTTaGAGCCTGAGAGGTCTTGGA | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCCHAGG*SLRGLG Trigger: TCCAAGACCTCTCAGGCTGCAACCCCCAGCATGACA...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTCAGGTCCAAGAGCAGTaGCAGGGCTCCTATCACCAT | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCQVQEQ*QGSYHH Trigger: ATGGTGATAGGAGCCCTGCCACTGCTCTTGGACCTG...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTCAGGGAGGTGATGCATaGCAAGTTCTCAATGCGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCQGGDA*QVLNAL Trigger: CAGCGCATTGAGAACTTGGCATGCATCACCTCCCTG...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGCCTGATTTGGTTTCTTaGCAAAGACAGGAAGCGCAG | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCAPDLVS*QRQEAQ Trigger: CTGCGCTTCCTGTCTTTGGCAAGAAACCAAATCAGG...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGTTGTCATTTTTGTCATaGTGGGGGTTGCAGCCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: DTLLGQSLRRWRVHRGCALSFLS*WGLQPE Trigger: CTCAGGCTGCAACCCCCAGCATGACAAAAATGACAA...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CCA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCAGAAACTGGAGGTACTaGAGGTCAAGGAGGTTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGRNWRY*RSRRFS Trigger: GGAAAACCTCCTTGACCTCCAGTACCTCCAGTTTCT...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGACAGGTCCAGAAACTaGAGGTACTGGAGGTCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCDRSRN*RYWRSR Trigger: CCTTGACCTCCAGTACCTCCAGTTTCTGGACCTGTC...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCCTCATCATCATCATCTaGGGATTTATCCTCCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGLIIII*GFILLI Trigger: GATGAGGAGGATAAATCCTCAGATGATGATGATGAG...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGTAGTAGAGGCAGTCTaGGTTGAGGAGGTAGCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCVVEAV*VEEVAL Trigger: TAAAGCTACCTCCTCAACTCAGACTGCCTCTACTAC...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGGGGCCATTGAGCTCTaGAAACTCATCATCATCATC | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCGAIEL*KLIIII Trigger: GATGATGATGATGAGTTTCCAGAGCTCAATGGCCCC...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGTGAAACATCTTTTCTaGCAGGTCTTCATCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCVKHLF*QVFISR Trigger: CCTGGAGATGAAGACCTGTCAGAAAAGATGTTTCAC...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR TCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGGTTTTCCACATGCCTaGTTTGGTTTCTTGCCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCGFPHA*FGFLPK Trigger: CTTTGGCAAGAAACCAAATCAGGCATGTGGAAAACC...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CCA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGGACAGAACTTTTCTaGTTCTTGGAAACCTGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGWTELF*FLETCF Trigger: GAAACAGGTTTCCAAGAACCAGAAAAGTTCTGTCCA...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR GCA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTATGCCAAGTTCTCAATaGGCTGGATCTTATTCGATT | + |
|
Preference number: 4 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCMPSSQ*AGSYSI Trigger: AATCGAATAAGATCCAGCGCATTGAGAACTTGGCAT...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCGAGAGGTCTTGGAGGTaGTGGCTGCTAGAGCCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGERSWR*WLLEPP Trigger: AGGGGGCTCTAGCAGCCACAACCTCCAAGACCTCTC...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 90 bp | GGTCCACCGCTCCAGGATAGGCTGCTTGTCCAGGTCCAAGAGCAGTaGCAGGGCTCCTATCACCATCTTCCTGTAGCCTTCCTGGTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: GPPLQDRLLVQVQEQ*QGSYHHLPVAFLVG Trigger: ACCAACCAGGAAGGCTACAGGAAGATGGTGATAGGAGCCCTGCCACTGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAGCGGTGGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | GACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGTCCTGCTCCAAGTCCTaGAAGAATCCTCGCTCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: DTLLGQSLRRWRVHRGCASCSKS*KNPRSA Trigger: CGCAGAGCGAGGATTCTTCAAGGACTTGGAGCAGGA...CGCACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS GCA 90 bp | GAGGATTTATCCTCCTCATCTGAGGTCCACCGCTCCAGGATAGGCTaGTTGTCCAGGTCCAAGAGCAGTGGCAGGGCTCCTATCACCATC | + |
|
Preference number: 5 (lower is better) Translates to: EDLSSSSEVHRSRIG*LSRSKSSGRAPITI Trigger: GATGGTGATAGGAGCCCTGCCACTGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAGCGGTGGACCTCAGATGAGGAGGATAAATCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCGCTGTGTCTCCATCCTaGACAAGTGCTCTGTCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGAVSPS*TSALSV Trigger: CACTGACAGAGCACTTGTCAAGGATGGAGACACAGC...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTTTGTCATGCTGGGGGTaGCAGCCTGAGAGGTCTTGG | + |
|
Preference number: 5 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCLSCWG*QPERSW Trigger: CCAAGACCTCTCAGGCTGCAACCCCCAGCATGACAA...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTGCGCAGAAGGGGCCATaGAGCTCTGGAAACTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCAQKGP*SSGNSS Trigger: TGATGAGTTTCCAGAGCTCAATGGCCCCTTCTGCGC...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 90 bp | ATCCCTTCCCCGTCCAGGCGGACAGTCTCCAGTTCACCGAGAGTGTaGAACATCTTTTCTGACAGGTCTTCATCTCCAGGGAAGGTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: IPSPSRRTVSSSPRV*NIFSDRSSSPGKVR Trigger: CCTGACCTTCCCTGGAGATGAAGACCTGTCAGAAAAGATGTTTCACACTCTCGGTGAACTGGAGACTGTCCGCCTGGACGGGGAAGGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTAAGGTCAGGTTCCGCTaGGTGATAAGGGCTTCAGTA | + |
|
Preference number: 5 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCKVRFR*VIRASV Trigger: TACTGAAGCCCTTATCACCAAGCGGAACCTGACCTT...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 90 bp | CAGGCGGACAGTCTCCAGTTCACCGAGAGTGTGAAACATCTTTTCTaGCAGGTCTTCATCTCCAGGGAAGGTCAGGTTCCGCTTGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: QADSLQFTESVKHLF*QVFISREGQVPLGD Trigger: ATCACCAAGCGGAACCTGACCTTCCCTGGAGATGAAGACCTGTCAGAAAAGATGTTTCACACTCTCGGTGAACTGGAGACTGTCCGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 90 bp | CTTTTCTGGTTCTTGGAAACCTGTTTCTTGGTAGTAGAGGCAGTCTaGGTTGAGGAGGTAGCTTTAGGGGCTGACTCCTTCCCAGGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: LFWFLETCFLVVEAV*VEEVALGADSFPGW Trigger: CCAGCCTGGGAAGGAGTCAGCCCCTAAAGCTACCTCCTCAACTCAGACTGCCTCTACTACCAAGAAACAGGTTTCCAAGAACCAGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS GCA 90 bp | ATGCTGATGCAGTTCCTGCTCCAAGTCCTTGAAGAATCCTCGCTCTaGGCAGAAGGGGCCATTGAGCTCTGGAAACTCATCATCATCATC | + |
|
Preference number: 5 (lower is better) Translates to: MLMQFLLQVLEESSL*AEGAIELWKLIIII Trigger: GATGATGATGATGAGTTTCCAGAGCTCAATGGCCCCTTCTGCGCAGAGCGAGGATTCTTCAAGGACTTGGAGCAGGAACTGCATCAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | CCCAGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCGAACTTTTCTGGTTCTaGGAAACCTGTTTCTTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: PRDTLLGQSLRRWRVHRGELFWF*ETCFLV Trigger: TACCAAGAAACAGGTTTCCAAGAACCAGAAAAGTTC...GCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS-3UTR CAA 90 bp | AGAGACACTTTATTGGGGCAAAGCCTGAGGAGGTGGCGCGTGCATAGAGGCTGTTCTTGTTTGTCATTTTaGTCATGCTGGGGGTTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RDTLLGQSLRRWRVHRGCSCLSF*SCWGLQ Trigger: CTGCAACCCCCAGCATGACAAAAATGACAAACAAGA...ACAGCCTCTATGCACGCGCCACCTCCTCAGGCTTTGCCCCAATAAAGTGTCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 90 bp | AGCGTTTCTATCAGGTTCTCAGACAGGTCCAGAAACTGGAGGTACTaGAGGTCAAGGAGGTTTTCCACATGCCTGATTTGGTTTCTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: SVSIRFSDRSRNWRY*RSRRFSTCLIWFLA Trigger: GGCAAGAAACCAAATCAGGCATGTGGAAAACCTCCTTGACCTCCAGTACCTCCAGTTTCTGGACCTGTCTGAGAACCTGATAGAAACGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS GCA 72 bp | TCCTCCTCATCTGAGGTCCACCGCTCCAGGATAGGCTaGTTGTCCAGGTCCAAGAGCAGTGGCAGGGCTCCT | + |
|
Preference number: 6 (lower is better) Translates to: SSSSEVHRSRIG*LSRSKSSGRAP Trigger: AGGAGCCCTGCCACTGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAGCGGTGGACCTCAGATGAGGAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 72 bp | TGCTGGGGGTTGCAGCCTGAGAGGTCTTGGAGGTTGTaGCTGCTAGAGCCCCCTTCCTTGCCTGGACAGAAC | + |
|
Preference number: 6 (lower is better) Translates to: CWGLQPERSWRL*LLEPPSLPGQN Trigger: GTTCTGTCCAGGCAAGGAAGGGGGCTCTAGCAGCCACAACCTCCAAGACCTCTCAGGCTGCAACCCCCAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 72 bp | TCCTCATCTGAGGTCCACCGCTCCAGGATAGGCTGCTaGTCCAGGTCCAAGAGCAGTGGCAGGGCTCCTATC | + |
|
Preference number: 6 (lower is better) Translates to: SSSEVHRSRIGC*SRSKSSGRAPI Trigger: GATAGGAGCCCTGCCACTGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAGCGGTGGACCTCAGATGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 72 bp | CTCCAGGATAGGCTGCTTGTCCAGGTCCAAGAGCAGTaGCAGGGCTCCTATCACCATCTTCCTGTAGCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: LQDRLLVQVQEQ*QGSYHHLPVAF Trigger: GAAGGCTACAGGAAGATGGTGATAGGAGCCCTGCCACTGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 90 bp | GATTTATCCTCCTCATCTGAGGTCCACCGCTCCAGGATAGGCTGCTaGTCCAGGTCCAAGAGCAGTGGCAGGGCTCCTATCACCATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: DLSSSSEVHRSRIGC*SRSKSSGRAPITIF Trigger: GAAGATGGTGATAGGAGCCCTGCCACTGCTCTTGGACCTGGACAAGCAGCCTATCCTGGAGCGGTGGACCTCAGATGAGGAGGATAAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 72 bp | CCGTCCAGGCGGACAGTCTCCAGTTCACCGAGAGTGTaGAACATCTTTTCTGACAGGTCTTCATCTCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: PSRRTVSSSPRV*NIFSDRSSSPG Trigger: CCCTGGAGATGAAGACCTGTCAGAAAAGATGTTTCACACTCTCGGTGAACTGGAGACTGTCCGCCTGGACGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 90 bp | CAGCCTGAGAGGTCTTGGAGGTTGTGGCTGCTAGAGCCCCCTTCCTaGCCTGGACAGAACTTTTCTGGTTCTTGGAAACCTGTTTCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: QPERSWRLWLLEPPS*PGQNFSGSWKPVSW Trigger: CCAAGAAACAGGTTTCCAAGAACCAGAAAAGTTCTGTCCAGGCAAGGAAGGGGGCTCTAGCAGCCACAACCTCCAAGACCTCTCAGGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 72 bp | GGAGGTACTGGAGGTCAAGGAGGTTTTCCACATGCCTaGTTTGGTTTCTTGCCAAAGACAGGAAGCGCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: GGTGGQGGFPHA*FGFLPKTGSAG Trigger: CCCTGCGCTTCCTGTCTTTGGCAAGAAACCAAATCAGGCATGTGGAAAACCTCCTTGACCTCCAGTACCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 72 bp | GACAGGTCTTCATCTCCAGGGAAGGTCAGGTTCCGCTaGGTGATAAGGGCTTCAGTAATGTGGACACCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: DRSSSPGKVRFR*VIRASVMWTPS Trigger: GGAAGGTGTCCACATTACTGAAGCCCTTATCACCAAGCGGAACCTGACCTTCCCTGGAGATGAAGACCTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 90 bp | AAACTGGAGGTACTGGAGGTCAAGGAGGTTTTCCACATGCCTGATTaGGTTTCTTGCCAAAGACAGGAAGCGCAGGGAGGTGATGCATGC | + |
|
Preference number: 6 (lower is better) Translates to: KLEVLEVKEVFHMPD*VSCQRQEAQGGDAC Trigger: GCATGCATCACCTCCCTGCGCTTCCTGTCTTTGGCAAGAAACCAAATCAGGCATGTGGAAAACCTCCTTGACCTCCAGTACCTCCAGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 72 bp | GTCAGGTTCCGCTTGGTGATAAGGGCTTCAGTAATGTaGACACCTTCCTCGGTTCTCTGGGCAGCTTTCTTA | + |
|
Preference number: 6 (lower is better) Translates to: VRFRLVIRASVM*TPSSVLWAAFL Trigger: TAAGAAAGCTGCCCAGAGAACCGAGGAAGGTGTCCACATTACTGAAGCCCTTATCACCAAGCGGAACCTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 90 bp | ATCTTTTCTGACAGGTCTTCATCTCCAGGGAAGGTCAGGTTCCGCTaGGTGATAAGGGCTTCAGTAATGTGGACACCTTCCTCGGTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: IFSDRSSSPGKVRFR*VIRASVMWTPSSVL Trigger: GAGAACCGAGGAAGGTGTCCACATTACTGAAGCCCTTATCACCAAGCGGAACCTGACCTTCCCTGGAGATGAAGACCTGTCAGAAAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 72 bp | AGTCTCCAGTTCACCGAGAGTGTGAAACATCTTTTCTaGCAGGTCTTCATCTCCAGGGAAGGTCAGGTTCCG | + |
|
Preference number: 6 (lower is better) Translates to: SLQFTESVKHLF*QVFISREGQVP Trigger: CGGAACCTGACCTTCCCTGGAGATGAAGACCTGTCAGAAAAGATGTTTCACACTCTCGGTGAACTGGAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 72 bp | ATCAGGTTCTCAGACAGGTCCAGAAACTGGAGGTACTaGAGGTCAAGGAGGTTTTCCACATGCCTGATTTGG | + |
|
Preference number: 6 (lower is better) Translates to: IRFSDRSRNWRY*RSRRFSTCLIW Trigger: CCAAATCAGGCATGTGGAAAACCTCCTTGACCTCCAGTACCTCCAGTTTCTGGACCTGTCTGAGAACCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CCA 72 bp | GCTAGAGCCCCCTTCCTTGCCTGGACAGAACTTTTCTaGTTCTTGGAAACCTGTTTCTTGGTAGTAGAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: ARAPFLAWTELF*FLETCFLVVEA Trigger: TGCCTCTACTACCAAGAAACAGGTTTCCAAGAACCAGAAAAGTTCTGTCCAGGCAAGGAAGGGGGCTCTAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 72 bp | TCCTTGAAGAATCCTCGCTCTGCGCAGAAGGGGCCATaGAGCTCTGGAAACTCATCATCATCATCTGAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: SLKNPRSAQKGP*SSGNSSSSSED Trigger: ATCCTCAGATGATGATGATGAGTTTCCAGAGCTCAATGGCCCCTTCTGCGCAGAGCGAGGATTCTTCAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS TCA 72 bp | TTCTTGGAAACCTGTTTCTTGGTAGTAGAGGCAGTCTaGGTTGAGGAGGTAGCTTTAGGGGCTGACTCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: FLETCFLVVEAV*VEEVALGADSF Trigger: GAAGGAGTCAGCCCCTAAAGCTACCTCCTCAACTCAGACTGCCTCTACTACCAAGAAACAGGTTTCCAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||
| CDS CAA 72 bp | GCATGCCAAGTTCTCAATGCGCTGGATCTTATTCGATaGCAGGTAGAGGCTGTGAATATTCCGGAGTTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: ACQVLNALDLIR*QVEAVNIPEFL Trigger: GAGAAACTCCGGAATATTCACAGCCTCTACCTGCAATCGAATAAGATCCAGCGCATTGAGAACTTGGCATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021251.7 |
||