Pregenerated sensors for LRRC43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063409Ensembl transcript IDs: ENSMUST00000094327.10, ENSMUST00000121444.2, ENSMUST00000196809.5
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGAATTCGCGCAGACACAACTTCCGCAGGTGCTCACACACAGCCGTaGTCAAGGTCCCCGGTACACCCTCGCCCTCGCCCTCGGTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: GIRADTTSAGAHTQP*SRSPVHPRPRPRSV Trigger: GACAGACCGAGGGCGAGGGCGAGGGTGTACCGGGGACCTTGAGCACGGCTGTGTGTGAGCACCTGCGGAAGTTGTGTCTGCGCGAATTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 90 bp | CTCCCGATGCCACACGGGAATTCGCGCAGACACAACTTCCGCAGGTaGTCACACACAGCCGTGCTCAAGGTCCCCGGTACACCCTCGCCC | + |
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Preference number: 5 (lower is better) Translates to: LPMPHGNSRRHNFRR*SHTAVLKVPGTPSP Trigger: GGGCGAGGGTGTACCGGGGACCTTGAGCACGGCTGTGTGTGAGCACCTGCGGAAGTTGTGTCTGCGCGAATTCCCGTGTGGCATCGGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | GCGGTACTGGTGCAGCTGGATCTGGACCTCCACCGACAGTGGCTCTaGCTGGTACCCGCTTTCCATGGTTGGAGGCACCGTTTTCGACCT | + |
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Preference number: 5 (lower is better) Translates to: AVLVQLDLDLHRQWL*LVPAFHGWRHRFRP Trigger: AGGTCGAAAACGGTGCCTCCAACCATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | CACCGAGCGGTACTGGTGCAGCTGGATCTGGACCTCCACCGACAGTaGCTCTGGCTGGTACCCGCTTTCCATGGTTGGAGGCACCGTTTT | + |
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Preference number: 5 (lower is better) Translates to: HRAVLVQLDLDLHRQ*LWLVPAFHGWRHRF Trigger: AAAACGGTGCCTCCAACCATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGCTCGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | CTAAGGAATGCTTCCTCCACCGAGCGGTACTGGTGCAGCTGGATCTaGACCTCCACCGACAGTGGCTCTGGCTGGTACCCGCTTTCCATG | + |
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Preference number: 5 (lower is better) Translates to: LRNASSTERYWCSWI*TSTDSGSGWYPLSM Trigger: CATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGCTCGGTGGAGGAAGCATTCCTTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | TGCAGGTCCGTCAAGTTGTTGAAGCCCAGGTCCAGGGAGACGAGTTaGGGCCAGTTGTGGGAGGTGACATACAGACTCTCCAAAGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: CRSVKLLKPRSRETS*GQLWEVTYRLSKGP Trigger: GGGCCCTTTGGAGAGTCTGTATGTCACCTCCCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGGACCTGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | TCCCTGGGGATGGACAGAGCTGGATGTCTATCTTTGGCCGCAGCTTaGCCAGCTCTTCAGAAGAGTCGATTGACTGTGGCAGGGGCGCAG | + |
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Preference number: 5 (lower is better) Translates to: SLGMDRAGCLSLAAA*PALQKSRLTVAGAQ Trigger: CTGCGCCCCTGCCACAGTCAATCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | TACTGGTGCAGCTGGATCTGGACCTCCACCGACAGTGGCTCTGGCTaGTACCCGCTTTCCATGGTTGGAGGCACCGTTTTCGACCTATCT | + |
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Preference number: 5 (lower is better) Translates to: YWCSWIWTSTDSGSG*YPLSMVGGTVFDLS Trigger: AGATAGGTCGAAAACGGTGCCTCCAACCATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 90 bp | AGGAGCCTCAGGTGCCTCAGGGTACTGAGTCCCAAGATCATGTTCTaGAGGTCCGTCAAGTTGTTGAAGCCCAGGTCCAGGGAGACGAGT | + |
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Preference number: 5 (lower is better) Translates to: RSLRCLRVLSPKIMF*RSVKLLKPRSRETS Trigger: ACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGGACCTGCAGAACATGATCTTGGGACTCAGTACCCTGAGGCACCTGAGGCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | GGGCCTCCACAGTCTCCTCCTCGGGAACCAGTGTCTCCTCCTCCTTaGGTACCAATTCCCTCCAGACTCGACATTTTTGAGGAAGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: GPPQSPPREPVSPPP*VPIPSRLDIFEEES Trigger: GCTTTCTTCCTCAAAAATGTCGAGTCTGGAGGGAATTGGTACCCAAGGAGGAGGAGACACTGGTTCCCGAGGAGGAGACTGTGGAGGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | TTGTGCACCGTGTTGAAGAGGACTGTCCCTGGGGATGGACAGAGCTaGATGTCTATCTTTGGCCGCAGCTTGGCCAGCTCTTCAGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: LCTVLKRTVPGDGQS*MSIFGRSLASSSEE Trigger: CTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGACAGTCCTCTTCAACACGGTGCACAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 90 bp | CAGATTCAACCGAGCCTTCTGCCATCTGACTCATCTCCTTCGCTATaGACTCAGACAGCTCCTTGGACATCTCCTCCGTCGAGCCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: QIQPSLLPSDSSPSL*TQTAPWTSPPSSLG Trigger: ACCCAGGCTCGACGGAGGAGATGTCCAAGGAGCTGTCTGAGTTCATAGCGAAGGAGATGAGTCAGATGGCAGAAGGCTCGGTTGAATCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 90 bp | CTCCTTGAGGGTGTGCTTCATCTCATAGGTGCAGGGAATAACATCTaGCCAGGGCTTGTGCACCGTGTTGAAGAGGACTGTCCCTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: LLEGVLHLIGAGNNI*PGLVHRVEEDCPWG Trigger: TCCCCAGGGACAGTCCTCTTCAACACGGTGCACAAGCCCTGGTCAGATGTTATTCCCTGCACCTATGAGATGAAGCACACCCTCAAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | CAGGGACCGGAAGTAGGAGTAGAAGAAAGTGTCTTTGATCATCAGTaGATTCTGGATGGCCAGCTCCCTCAGGAAACGGTCCTCCGCGCT | + |
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Preference number: 5 (lower is better) Translates to: QGPEVGVEESVFDHQ*ILDGQLPQETVLRA Trigger: AGCGCGGAGGACCGTTTCCTGAGGGAGCTGGCCATCCAGAATCCACTGATGATCAAAGACACTTTCTTCTACTCCTACTTCCGGTCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 90 bp | AAGTTGTTGAAGCCCAGGTCCAGGGAGACGAGTTGGGGCCAGTTGTaGGAGGTGACATACAGACTCTCCAAAGGGCCCAGCAATTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: KLLKPRSRETSWGQL*EVTYRLSKGPSNLL Trigger: CAACAAATTGCTGGGCCCTTTGGAGAGTCTGTATGTCACCTCCCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 90 bp | GTCTCCTCCTCCTTGGGTACCAATTCCCTCCAGACTCGACATTTTTaGGGAAGAAAGCGTGACTTATTCCAGCTCCCGATGCCACACGGG | + |
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Preference number: 5 (lower is better) Translates to: VSSSLGTNSLQTRHF*GRKRDLFQLPMPHG Trigger: CCCGTGTGGCATCGGGAGCTGGAATAAGTCACGCTTTCTTCCTCAAAAATGTCGAGTCTGGAGGGAATTGGTACCCAAGGAGGAGGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 90 bp | CTTCTCATTGGGAGACACGGTGATGTCGTCCAGCACACAAAGATGTaGCAGGCTGTCTATGGTAAAGCCACGGTAGTAAGGCACCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: LLIGRHGDVVQHTKM*QAVYGKATVVRHQR Trigger: TCTCTGGTGCCTTACTACCGTGGCTTTACCATAGACAGCCTGGCACATCTTTGTGTGCTGGACGACATCACCGTGTCTCCCAATGAGAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 90 bp | CAGTCGACCTCTGTTATCCCAGATTCAACCGAGCCTTCTGCCATCTaGCTCATCTCCTTCGCTATGAACTCAGACAGCTCCTTGGACATC | + |
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Preference number: 5 (lower is better) Translates to: QSTSVIPDSTEPSAI*LISFAMNSDSSLDI Trigger: GATGTCCAAGGAGCTGTCTGAGTTCATAGCGAAGGAGATGAGTCAGATGGCAGAAGGCTCGGTTGAATCTGGGATAACAGAGGTCGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 90 bp | TCGGTGCCAGAGAAATGCTTGTCGATCTCATCCAGAACGCTGTCATaGTGTGTTGCCTCTACTAGCCCACTAACATTTCTTTCCATGTCC | + |
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Preference number: 5 (lower is better) Translates to: SVPEKCLSISSRTLS*CVASTSPLTFLSMS Trigger: GGACATGGAAAGAAATGTTAGTGGGCTAGTAGAGGCAACACATCATGACAGCGTTCTGGATGAGATCGACAAGCATTTCTCTGGCACCGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 90 bp | CACCGTTTTCGACCTATCTTTCTTGAGAGATTTCTTTACCTTCTTTaGATCCCTGGCATGTGTGAGCCTGTCTGTCTCCAGGGTTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: HRFRPIFLERFLYLL*IPGMCEPVCLQGSD Trigger: GTCCGAACCCTGGAGACAGACAGGCTCACACATGCCAGGGATTCAAAGAAGGTAAAGAAATCTCTCAAGAAAGATAGGTCGAAAACGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 |
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| CDS CCA 72 bp | GCTTCCTCCACCGAGCGGTACTGGTGCAGCTGGATCTaGACCTCCACCGACAGTGGCTCTGGCTGGTACCCG | + |
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Preference number: 6 (lower is better) Translates to: ASSTERYWCSWI*TSTDSGSGWYP Trigger: CGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGCTCGGTGGAGGAAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | CTCAGACAGCTCCTTGGACATCTCCTCCGTCGAGCCTaGGTGAAACCTCTGACGGCCTCTGTGGCGGTGGCG | + |
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Preference number: 6 (lower is better) Translates to: LRQLLGHLLRRA*VKPLTASVAVA Trigger: CGCCACCGCCACAGAGGCCGTCAGAGGTTTCACCCAGGCTCGACGGAGGAGATGTCCAAGGAGCTGTCTGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | GTGCAGCTGGATCTGGACCTCCACCGACAGTGGCTCTaGCTGGTACCCGCTTTCCATGGTTGGAGGCACCGT | + |
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Preference number: 6 (lower is better) Translates to: VQLDLDLHRQWL*LVPAFHGWRHR Trigger: ACGGTGCCTCCAACCATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 72 bp | CCACACGGGAATTCGCGCAGACACAACTTCCGCAGGTaGTCACACACAGCCGTGCTCAAGGTCCCCGGTACA | + |
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Preference number: 6 (lower is better) Translates to: PHGNSRRHNFRR*SHTAVLKVPGT Trigger: TGTACCGGGGACCTTGAGCACGGCTGTGTGTGAGCACCTGCGGAAGTTGTGTCTGCGCGAATTCCCGTGTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 72 bp | GCAGCCTTGGGGGCGGGGCTGAGCACAGACACTCCATaGTGGCGATCAAATTGCCATAGAGCTCCAGCACCT | + |
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Preference number: 6 (lower is better) Translates to: AALGAGLSTDTP*WRSNCHRAPAP Trigger: AGGTGCTGGAGCTCTATGGCAATTTGATCGCCAGCATGGAGTGTCTGTGCTCAGCCCCGCCCCCAAGGCTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | ACATACAGACTCTCCAAAGGGCCCAGCAATTTGTTGTaGCCTAGCCCCAGGTGCTGCAGCCTTGGGGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: TYRLSKGPSNLL*PSPRCCSLGGG Trigger: CCCGCCCCCAAGGCTGCAGCACCTGGGGCTAGGCCACAACAAATTGCTGGGCCCTTTGGAGAGTCTGTATGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | TCTCCAGGGTTCGGACCACCCCGAAATTACACACAGTaGATACCACTGCCTCCCCGGCCAGCAAGGGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SPGFGPPRNYTQ*IPLPPRPARAP Trigger: TGGAGCCCTTGCTGGCCGGGGAGGCAGTGGTATCCACTGTGTGTAATTTCGGGGTGGTCCGAACCCTGGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | GTACTGGTGCAGCTGGATCTGGACCTCCACCGACAGTaGCTCTGGCTGGTACCCGCTTTCCATGGTTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: VLVQLDLDLHRQ*LWLVPAFHGWR Trigger: CCTCCAACCATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | GCCTTGGGGGCGGGGCTGAGCACAGACACTCCATGCTaGCGATCAAATTGCCATAGAGCTCCAGCACCTTCA | + |
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Preference number: 6 (lower is better) Translates to: ALGAGLSTDTPC*RSNCHRAPAPS Trigger: TGAAGGTGCTGGAGCTCTATGGCAATTTGATCGCCAGCATGGAGTGTCTGTGCTCAGCCCCGCCCCCAAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | AGCTGGATCTGGACCTCCACCGACAGTGGCTCTGGCTaGTACCCGCTTTCCATGGTTGGAGGCACCGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SWIWTSTDSGSG*YPLSMVGGTVF Trigger: GAAAACGGTGCCTCCAACCATGGAAAGCGGGTACCAGCCAGAGCCACTGTCGGTGGAGGTCCAGATCCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | GTGACATACAGACTCTCCAAAGGGCCCAGCAATTTGTaGTGGCCTAGCCCCAGGTGCTGCAGCCTTGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: VTYRLSKGPSNL*WPSPRCCSLGG Trigger: GCCCCCAAGGCTGCAGCACCTGGGGCTAGGCCACAACAAATTGCTGGGCCCTTTGGAGAGTCTGTATGTCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 90 bp | CTGCAGGTCCGTCAAGTTGTTGAAGCCCAGGTCCAGGGAGACGAGTaGGGGCCAGTTGTGGGAGGTGACATACAGACTCTCCAAAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: LQVRQVVEAQVQGDE*GPVVGGDIQTLQRA Trigger: GGCCCTTTGGAGAGTCTGTATGTCACCTCCCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGGACCTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 90 bp | GTCCCTGGGGATGGACAGAGCTGGATGTCTATCTTTGGCCGCAGCTaGGCCAGCTCTTCAGAAGAGTCGATTGACTGTGGCAGGGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: VPGDGQSWMSIFGRS*ASSSEESIDCGRGA Trigger: TGCGCCCCTGCCACAGTCAATCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | TGGCCGCAGCTTGGCCAGCTCTTCAGAAGAGTCGATTaGCTGTGGCAGGGGCGCAGAGTGGATGGAAATGCT | + |
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Preference number: 6 (lower is better) Translates to: WPQLGQLFRRVD*LWQGRRVDGNA Trigger: AGCATTTCCATCCACTCTGCGCCCCTGCCACAGTCAATCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 72 bp | AAGCTAAGGAATGCTTCCTCCACCGAGCGGTACTGGTaGAGCTGGATCTGGACCTCCACCGACAGTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: KLRNASSTERYW*SWIWTSTDSGS Trigger: AGAGCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGCTCGGTGGAGGAAGCATTCCTTAGCTT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | ATCAAGCTAAGGAATGCTTCCTCCACCGAGCGGTACTaGTGCAGCTGGATCTGGACCTCCACCGACAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: IKLRNASSTERY*CSWIWTSTDSG Trigger: GCCACTGTCGGTGGAGGTCCAGATCCAGCTGCACCAGTACCGCTCGGTGGAGGAAGCATTCCTTAGCTTGAT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 |
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| CDS CAA 72 bp | GAGGTGACATACAGACTCTCCAAAGGGCCCAGCAATTaGTTGTGGCCTAGCCCCAGGTGCTGCAGCCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: EVTYRLSKGPSN*LWPSPRCCSLG Trigger: CCCAAGGCTGCAGCACCTGGGGCTAGGCCACAACAAATTGCTGGGCCCTTTGGAGAGTCTGTATGTCACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | TTGGCCGCAGCTTGGCCAGCTCTTCAGAAGAGTCGATaGACTGTGGCAGGGGCGCAGAGTGGATGGAAATGC | + |
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Preference number: 6 (lower is better) Translates to: LAAAWPALQKSR*TVAGAQSGWKC Trigger: GCATTTCCATCCACTCTGCGCCCCTGCCACAGTCAATCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | ACGATGCTCACAGTAGTCCCAGCCAGCAGGAAGGCCTaGACCCGGATCAGCTCCTTGAGGGTGTGCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: TMLTVVPASRKA*TRISSLRVCFI Trigger: GATGAAGCACACCCTCAAGGAGCTGATCCGGGTCAAGGCCTTCCTGCTGGCTGGGACTACTGTGAGCATCGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094327.10 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | CAGGAGAGGATAGTAGTCCCAGCCAGCAGGAAGGCCTaGACCCGGATCAGCTCCTTGAGGGTGTGCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: QERIVVPASRKA*TRISSLRVCFI Trigger: GATGAAGCACACCCTCAAGGAGCTGATCCGGGTCAAGGCCTTCCTGCTGGCTGGGACTACTATCCTCTCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000121444.2 |
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| CDS CAA 90 bp | AGGGTACTGAGTCCCAAGATCATGTTCTGCAGGTCCGTCAAGTTGTaGAAGCCCAGGTCCAGGGAGACGAGTTGGGGCCAGTTGTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: RVLSPKIMFCRSVKL*KPRSRETSWGQLWE Trigger: CTCCCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGGACCTGCAGAACATGATCTTGGGACTCAGTACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 90 bp | CTCAGGGTACTGAGTCCCAAGATCATGTTCTGCAGGTCCGTCAAGTaGTTGAAGCCCAGGTCCAGGGAGACGAGTTGGGGCCAGTTGTGG | + |
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Preference number: 6 (lower is better) Translates to: LRVLSPKIMFCRSVK*LKPRSRETSWGQLW Trigger: CCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGGACCTGCAGAACATGATCTTGGGACTCAGTACCCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | GTCCCCGGAACTGGTGCTTCTCATTGGGAGACACGGTaGTGTCGTCCAGCACACAAAGATGTGCCAGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: VPGTGASHWETR*CRPAHKDVPGC Trigger: ACAGCCTGGCACATCTTTGTGTGCTGGACGACATCACCGTGTCTCCCAATGAGAAGCACCAGTTCCGGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 72 bp | GGGCTGAGCACAGACACTCCATGCTGGCGATCAAATTaGCATAGAGCTCCAGCACCTTCAATGTCGGGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GLSTDTPCWRSN*HRAPAPSMSGA Trigger: TGCCCCCGACATTGAAGGTGCTGGAGCTCTATGGCAATTTGATCGCCAGCATGGAGTGTCTGTGCTCAGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | GTGTTGAAGAGGACTGTCCCTGGGGATGGACAGAGCTaGATGTCTATCTTTGGCCGCAGCTTGGCCAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: VLKRTVPGDGQS*MSIFGRSLASS Trigger: AGAGCTGGCCAAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGACAGTCCTCTTCAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | TCCCCTTCTTGGCAGGCAAGGGACTCTCAACGGGAGTaGGTACCACAGGCCAGGAGAGGATTTTCTCCTCTA | + |
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Preference number: 6 (lower is better) Translates to: SPSWQARDSQRE*VPQARRGFSPL Trigger: TAGAGGAGAAAATCCTCTCCTGGCCTGTGGTACCCACTCCCGTTGAGAGTCCCTTGCCTGCCAAGAAGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000094327.10 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | CTGAGTCCCAAGATCATGTTCTGCAGGTCCGTCAAGTaGTTGAAGCCCAGGTCCAGGGAGACGAGTTGGGGC | + |
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Preference number: 6 (lower is better) Translates to: LSPKIMFCRSVK*LKPRSRETSWG Trigger: GCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGACGGACCTGCAGAACATGATCTTGGGACTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | CTGTCCCTGGGGATGGACAGAGCTGGATGTCTATCTTaGGCCGCAGCTTGGCCAGCTCTTCAGAAGAGTCGA | + |
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Preference number: 6 (lower is better) Translates to: LSLGMDRAGCLS*AAAWPALQKSR Trigger: TCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | CAGGGAATAACATCTGACCAGGGCTTGTGCACCGTGTaGAAGAGGACTGTCCCTGGGGATGGACAGAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: QGITSDQGLCTV*KRTVPGDGQSW Trigger: CCAGCTCTGTCCATCCCCAGGGACAGTCCTCTTCAACACGGTGCACAAGCCCTGGTCAGATGTTATTCCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 90 bp | GTCAAGTTGTTGAAGCCCAGGTCCAGGGAGACGAGTTGGGGCCAGTaGTGGGAGGTGACATACAGACTCTCCAAAGGGCCCAGCAATTTG | + |
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Preference number: 6 (lower is better) Translates to: VKLLKPRSRETSWGQ*WEVTYRLSKGPSNL Trigger: CAAATTGCTGGGCCCTTTGGAGAGTCTGTATGTCACCTCCCACAACTGGCCCCAACTCGTCTCCCTGGACCTGGGCTTCAACAACTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | ACTGGGCCTCACGTGCCAAAAGGTCACCGTGAATGTTaGGTCCCCGGAACTGGTGCTTCTCATTGGGAGACA | + |
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Preference number: 6 (lower is better) Translates to: TGPHVPKGHREC*VPGTGASHWET Trigger: TGTCTCCCAATGAGAAGCACCAGTTCCGGGGACTCAACATTCACGGTGACCTTTTGGCACGTGAGGCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS GCA 72 bp | AGGTGCCTCAGGGTACTGAGTCCCAAGATCATGTTCTaGAGGTCCGTCAAGTTGTTGAAGCCCAGGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RCLRVLSPKIMF*RSVKLLKPRSR Trigger: CCTGGACCTGGGCTTCAACAACTTGACGGACCTGCAGAACATGATCTTGGGACTCAGTACCCTGAGGCACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | TGTCCCTGGGGATGGACAGAGCTGGATGTCTATCTTTaGCCGCAGCTTGGCCAGCTCTTCAGAAGAGTCGAT | + |
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Preference number: 6 (lower is better) Translates to: CPWGWTELDVYL*PQLGQLFRRVD Trigger: ATCGACTCTTCTGAAGAGCTGGCCAAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | CTTGTGCACCGTGTTGAAGAGGACTGTCCCTGGGGATaGACAGAGCTGGATGTCTATCTTTGGCCGCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: LVHRVEEDCPWG*TELDVYLWPQL Trigger: AAGCTGCGGCCAAAGATAGACATCCAGCTCTGTCCATCCCCAGGGACAGTCCTCTTCAACACGGTGCACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | GTTTTCGACCTATCTTCTTTGAATCCCTGGCATGTGTaGGCCTGTCTGTCTCCAGGGTTCGGACCACCCCGA | + |
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Preference number: 6 (lower is better) Translates to: VFDLSSLNPWHV*ACLSPGFGPPR Trigger: TCGGGGTGGTCCGAACCCTGGAGACAGACAGGCTCACACATGCCAGGGATTCAAAGAAGATAGGTCGAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196809.5 |
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| CDS GCA 72 bp | GGGAGACACGGTGATGTCGTCCAGCACACAAAGATGTaGCAGGCTGTCTATGGTAAAGCCACGGTAGTAAGG | + |
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Preference number: 6 (lower is better) Translates to: GRHGDVVQHTKM*QAVYGKATVVR Trigger: CCTTACTACCGTGGCTTTACCATAGACAGCCTGGCACATCTTTGTGTGCTGGACGACATCACCGTGTCTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | CCATGGTTGGAGGCACCGTTTTCGACCTATCTTCTTTaGATCCCTGGCATGTGTGAGCCTGTCTGTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: PWLEAPFSTYLL*IPGMCEPVCLQ Trigger: CTGGAGACAGACAGGCTCACACATGCCAGGGATTCAAAGAAGATAGGTCGAAAACGGTGCCTCCAACCATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196809.5 |
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| CDS GCA 72 bp | GACATTTCCAATCGTCACCACAAACTGGGCCTCACGTaGCAAAAGGTCACCGTGAATGTTGAGTCCCCGGAA | + |
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Preference number: 6 (lower is better) Translates to: DISNRHHKLGLT*QKVTVNVESPE Trigger: TTCCGGGGACTCAACATTCACGGTGACCTTTTGGCACGTGAGGCCCAGTTTGTGGTGACGATTGGAAATGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CAA 72 bp | TCCTGCCGCAGCTCCCTGGGCGGCTCCTTTTTCTTCTaGTGGACCTTATCCTTAGCAGGCTCTTTCTTTTTA | + |
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Preference number: 6 (lower is better) Translates to: SCRSSLGGSFFF*WTLSLAGSFFL Trigger: TAAAAAGAAAGAGCCTGCTAAGGATAAGGTCCACAAGAAGAAAAAGGAGCCGCCCAGGGAGCTGCGGCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | TTCCCTCCAGACTCGACATTTTTGAGGAAGAAAGCGTaGCTTATTCCAGCTCCCGATGCCACACGGGAATTC | + |
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Preference number: 6 (lower is better) Translates to: FPPDSTFLRKKA*LIPAPDATREF Trigger: GAATTCCCGTGTGGCATCGGGAGCTGGAATAAGTCACGCTTTCTTCCTCAAAAATGTCGAGTCTGGAGGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | TCTGTTATCCCAGATTCAACCGAGCCTTCTGCCATCTaGCTCATCTCCTTCGCTATGAACTCAGACAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SVIPDSTEPSAI*LISFAMNSDSS Trigger: GGAGCTGTCTGAGTTCATAGCGAAGGAGATGAGTCAGATGGCAGAAGGCTCGGTTGAATCTGGGATAACAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | TGCCGCAGCTCCCTGGGCGGCTCCTTTTTCTTCTTGTaGACCTTATCCTTAGCAGGCTCTTTCTTTTTATTG | + |
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Preference number: 6 (lower is better) Translates to: CRSSLGGSFFFL*TLSLAGSFFLL Trigger: CAATAAAAAGAAAGAGCCTGCTAAGGATAAGGTCCACAAGAAGAAAAAGGAGCCGCCCAGGGAGCTGCGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | TCCTTGGGTACCAATTCCCTCCAGACTCGACATTTTTaGGGAAGAAAGCGTGACTTATTCCAGCTCCCGATG | + |
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Preference number: 6 (lower is better) Translates to: SLGTNSLQTRHF*GRKRDLFQLPM Trigger: CATCGGGAGCTGGAATAAGTCACGCTTTCTTCCTCAAAAATGTCGAGTCTGGAGGGAATTGGTACCCAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS CCA 72 bp | GAAGTAGGAGTAGAAGAAAGTGTCTTTGATCATCAGTaGATTCTGGATGGCCAGCTCCCTCAGGAAACGGTC | + |
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Preference number: 6 (lower is better) Translates to: EVGVEESVFDHQ*ILDGQLPQETV Trigger: GACCGTTTCCTGAGGGAGCTGGCCATCCAGAATCCACTGATGATCAAAGACACTTTCTTCTACTCCTACTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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| CDS TCA 72 bp | GAGAAATGCTTGTCGATCTCATCCAGAACGCTGTCATaGTGTGTTGCCTCTACTAGCCCACTAACATTTCTT | + |
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Preference number: 6 (lower is better) Translates to: EKCLSISSRTLS*CVASTSPLTFL Trigger: AAGAAATGTTAGTGGGCTAGTAGAGGCAACACATCATGACAGCGTTCTGGATGAGATCGACAAGCATTTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094327.10 ENSMUST00000121444.2 ENSMUST00000196809.5 |
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