Pregenerated sensors for LRRC42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028617Ensembl transcript IDs: ENSMUST00000030360.11, ENSMUST00000144176.2, ENSMUST00000156771.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TCACCAGCAGTCTCCCCTCCTCGTACTGAGGTGGGGGAGGTCGACTGTATGTGTCATCCAGAGCCAGGTTaGCCATGTGTAGCTGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SPAVSPPRTEVGEVDCMCHPEPG*PCVAAH Trigger: ATGGGCAGCTACACATGGTCAACCTGGCTCTGGATG...ACACATACAGTCGACCTCCCCCACCTCAGTACGAGGAGGGGAGACTGCTGGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | TCACCAGCAGTCTCCCCTCCTCGTACTGAGGTGGGGGAGGTCGACTGTATGTGTATCCAGGTGGGCTTCTaGGTTGAGGTAGTAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SPAVSPPRTEVGEVDCMCIQVGF*VEVVSH Trigger: ATGGCTTACTACCTCAACTCAGAAGCCCACCTGGAT...ACACATACAGTCGACCTCCCCCACCTCAGTACGAGGAGGGGAGACTGCTGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | TCACCAGCAGTCTCCCCTCCTCGTACTGAGGTGGGGGAGGTCGACTGTATGTGTGAGTCTGAATGGTCGTaGCTTCTGCAGGCTGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: SPAVSPPRTEVGEVDCMCESEWS*LLQAVF Trigger: AAAAACAGCCTGCAGAAGCCACGACCATTCAGACTC...ACACATACAGTCGACCTCCCCCACCTCAGTACGAGGAGGGGAGACTGCTGGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | TCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACCAGACTTCTGTAACGCCCTaGGCCCTGCCCCTGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: SACYANAIGKSKPKENHQTSVTP*ALPLAL Trigger: CAGAGCCAGGGGCAGGGCTCAGGGCGTTACAGAAGT...CTGGTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | CGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCGACTGGGGCGAGCTCTaGTCCTGCTCTGACTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: RTTKVEISACYANAIGKSDWGEL*SCSDSL Trigger: CAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTC...GGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | CGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCACACACACTTCTGCTTaGCCGACTGGGGCGAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: RTTKVEISACYANAIGKSTHTSA*PTGASS Trigger: AGAGCTCGCCCCAGTCGGCCAAGCAGAAGTGTGTGT...GGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAAGGCGAGCTCTGCTCCTaGTCTGACTCCTTGAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: SRTTKVEISACYANAIGKGELCS*SDSLKA Trigger: AGCTTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCC...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ACATTAGAAATTATTACATACGTCCATAGCCTTCCCTCCCGCACCACAAAAGTAGCTCTGCTCCTGCTCTaGCTCCTTGAAAGCTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: TLEIITYVHSLPSRTTKVALLLL*LLESSL Trigger: AAGAGAGCTTTCAAGGAGTCAGAGCAGGAGCAGAGC...TACTTTTGTGGTGCGGGAGGGAAGGCTATGGACGTATGTAATAATTTCTAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAAAGCTTCTCAGCGATCTaGTCAGGAAAGCCGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: SRTTKVEISACYANAIGKSFSAI*SGKPMR Trigger: CCTCATCGGCTTTCCTGAGCAGATCGCTGAGAAGCT...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | TCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACCAGCCTGAGCCCTGCCCCTaGCTCTGTGAATTTCTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SACYANAIGKSKPKENHQPEPCP*LCEFLS Trigger: AGACAGAAATTCACAGAGCCAGGGGCAGGGCTCAGG...CTGGTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAAGTTCATGTGGGTCTCTaGGAGGGGACATTTCCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SRTTKVEISACYANAIGKVHVGL*EGTFPC Trigger: ACAAGGAAATGTCCCCTCGCAGAGACCCACATGAAC...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ACATTAGAAATTATTACATACGTCCATAGCCTTCCCTCCCGCACCACAAAAGTAGCTCAGGAAAGCCGATaGGGGAATCAATGTGATCAA | + |
|
Preference number: 4 (lower is better) Translates to: TLEIITYVHSLPSRTTKVAQESR*GNQCDQ Trigger: TTGATCACATTGATTCCCTCATCGGCTTTCCTGAGC...TACTTTTGTGGTGCGGGAGGGAAGGCTATGGACGTATGTAATAATTTCTAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ACATTAGAAATTATTACATACGTCCATAGCCTTCCCTCCCGCACCACAAAAGTAGCTCCCGGAAAGACTTaGTCTCTTCAAGCTTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TLEIITYVHSLPSRTTKVAPGKT*SLQAFL Trigger: CAGAAAAGCTTGAAGAGATCAAGTCTTTCCGGGAGC...TACTTTTGTGGTGCGGGAGGGAAGGCTATGGACGTATGTAATAATTTCTAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAAAAAGGCACTTTGGAGTaGACAAGGCCTATGTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: SRTTKVEISACYANAIGKKGTLE*TRPMFA Trigger: GGCAAACATAGGCCTTGTTCACTCCAAAGTGCCTTT...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACTTCTTGGCTCAACAGTaGCTCATGGCAGTCCGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHFLAQQ*LMAVRS Trigger: GCTCCGGACTGCCATGAGCCACTGTTGAGCCAAGAA...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | CGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCCTTCTTGCTCTTCTTTaGTTCTTGGCTCAACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: RTTKVEISACYANAIGKSLLALL*FLAQQW Trigger: CCACTGTTGAGCCAAGAATCAAAGAAGAGCAAGAAG...GGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | GTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAACGTCTTCCCTGTTCATaGACAGCTCCACGGAAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: VEISACYANAIGKSKPKERLPCS*TAPRKS Trigger: GCTTTTCCGTGGAGCTGTGCATGAACAGGGAAGACG...TTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | GTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAGGGAAAGAGTCTGAATaGTCGTGGCTTCTGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: VEISACYANAIGKSKPKEGKESE*SWLLQA Trigger: AGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCC...TTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | ACATTAGAAATTATTACATACGTCCATAGCCTTCCCTCCCGCACCACAAAAGTATTTCATCACCCGCACTaGTGCTGTCATTTTCCGAAT | + |
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Preference number: 4 (lower is better) Translates to: TLEIITYVHSLPSRTTKVFHHPH*CCHFPN Trigger: ATTCGGAAAATGACAGCACCAGTGCGGGTGATGAAA...TACTTTTGTGGTGCGGGAGGGAAGGCTATGGACGTATGTAATAATTTCTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | ACATTAGAAATTATTACATACGTCCATAGCCTTCCCTCCCGCACCACAAAAGTACCTTCAAAGGCACTTTaGAGTGAACAAGGCCTATGT | + |
|
Preference number: 4 (lower is better) Translates to: TLEIITYVHSLPSRTTKVPSKAL*SEQGLC Trigger: ACATAGGCCTTGTTCACTCCAAAGTGCCTTTGAAGG...TACTTTTGTGGTGCGGGAGGGAAGGCTATGGACGTATGTAATAATTTCTAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | GTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAACCAGAAGAGTTCATGTaGGTCTCTGCGAGGGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: VEISACYANAIGKSKPKEPEEFM*VSARGH Trigger: ATGTCCCCTCGCAGAGACCCACATGAACTCTTCTGG...TTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CCA 90 bp | CGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCCTCTTCTTTGATTCTTaGCTCAACAGTGGCTCATGG | + |
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Preference number: 4 (lower is better) Translates to: RTTKVEISACYANAIGKSLFFDS*LNSGSW Trigger: CCATGAGCCACTGTTGAGCCAAGAATCAAAGAAGAG...GGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACCTTTGGGAAAGAGTCTaGATGGTCGTGGCTTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHLWERV*MVVASA Trigger: TGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAG...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | GTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAATCAAGTGGAGCTGAGTaGCACTGGACAGAGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: VEISACYANAIGKSKPKESSGAE*HWTELH Trigger: ATGAAGCTCTGTCCAGTGTCACTCAGCTCCACTTGA...TTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | TCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACCAGAATGGTCGTGGCTTCTaGAGGCTGTTTTTAACACCA | + |
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Preference number: 4 (lower is better) Translates to: SACYANAIGKSKPKENHQNGRGF*RLFLTP Trigger: TGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATT...CTGGTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | TCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACCAGTGTTCTAGAAGCTCATaGTCATCTCCAAGCCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: SACYANAIGKSKPKENHQCSRSS*SSPSQQ Trigger: TTGCTGGCTTGGAGATGAGCATGAGCTTCTAGAACA...CTGGTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACGGTCTTCTCTTTCTGTaGAGTGTCGTCTTCCCTGTT | + |
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Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHGLLFL*SVVFPV Trigger: AACAGGGAAGACGACACTGCACAGAAAGAGAAGACC...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAACTCTTCAAGCTTTTCTaGAACCACCAAATACCTGTT | + |
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Preference number: 4 (lower is better) Translates to: SRTTKVEISACYANAIGKLFKLF*NHQIPV Trigger: AACAGGTATTTGGTGGTTGCAGAAAAGCTTGAAGAG...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACACAGAGCTTCATTGGTaGGGTGTTCTAGAAGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHTELHW*GVLEAH Trigger: ATGAGCTTCTAGAACACCTCACCAATGAAGCTCTGT...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACATGAGGGAATCAATGTaGTCAACATTGTCGGAGATG | + |
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Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHMRESM*STLSEM Trigger: CATCTCCGACAATGTTGATCACATTGATTCCCTCAT...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACTACGTGAAGATAAAGTaGTCGGTCTTCTCTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHYVKIK*SVFSFC Trigger: ACAGAAAGAGAAGACCGATCACTTTATCTTCACGTA...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | GTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAACTGTCATTTTCCGAATaGCTGCATCAGATAAGCAAT | + |
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Preference number: 4 (lower is better) Translates to: VEISACYANAIGKSKPKELSFSE*LHQISN Trigger: ATTGCTTATCTGATGCAGGCATTCGGAAAATGACAG...TTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR GCA 90 bp | GTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAACCCAGCCCTCTGTTTTaGAGTTACTATGATCAAATT | + |
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Preference number: 4 (lower is better) Translates to: VEISACYANAIGKSKPKEPSPLF*SYYDQI Trigger: AATTTGATCATAGTAACTGCAAAACAGAGGGCTGGG...TTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR TCA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACGTTTTGCAGTTACTATaGTCAAATTCCTTCAAAGGC | + |
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Preference number: 4 (lower is better) Translates to: ISACYANAIGKSKPKENHVLQLL*SNSFKG Trigger: GCCTTTGAAGGAATTTGATCATAGTAACTGCAAAAC...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 90 bp | GAATTGAGCAAATCCCAATCTTCCACAGCCAGACACACACACTTCTaGTTGGCCGACTGGGGCGAGCTCTGCTCCTGCTCTGACTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: ELSKSQSSTARHTHF*LADWGELCSCSDSL Trigger: CAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGCCAAGCAGAAGTGTGTGTGTCTGGCTGTGGAAGATTGGGATTTGCTCAATTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 90 bp | GTGACACTGGACAGAGCTTCATTGGTGAGGTGTTCTAGAAGCTCATaGTCATCTCCAAGCCAGCAACAGGAGAGGTCTAGACGGGTCAGC | + |
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Preference number: 5 (lower is better) Translates to: VTLDRASLVRCSRSS*SSPSQQQERSRRVS Trigger: GCTGACCCGTCTAGACCTCTCCTGTTGCTGGCTTGGAGATGAGCATGAGCTTCTAGAACACCTCACCAATGAAGCTCTGTCCAGTGTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CAA 90 bp | TCACCAGCAGTCTCCCCTCCTCGTACTGAGGTGGGGGAGGTCGACTGTATGTGTAGCTCCCGGAAAGACTaGATCTCTTCAAGCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SPAVSPPRTEVGEVDCMCSSRKD*ISSSFS Trigger: AGAAAAGCTTGAAGAGATCAAGTCTTTCCGGGAGCT...ACACATACAGTCGACCTCCCCCACCTCAGTACGAGGAGGGGAGACTGCTGGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 90 bp | AGACACACACACTTCTGCTTGGCCGACTGGGGCGAGCTCTGCTCCTaGTCTGACTCCTTGAAAGCTCTCTTCTTGCTCTTCTTTGATTCT | + |
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Preference number: 5 (lower is better) Translates to: RHTHFCLADWGELCS*SDSLKALFLLFFDS Trigger: AGAATCAAAGAAGAGCAAGAAGAGAGCTTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGCCAAGCAGAAGTGTGTGTGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CCA 90 bp | GCACAGCTCCACGGAAAAGCCTTTGGGAAAGAGTCTGAATGGTCGTaGCTTCTGCAGGCTGTTTTTAACACCATCCAGAGCCAGGTTGAC | + |
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Preference number: 5 (lower is better) Translates to: AQLHGKAFGKESEWS*LLQAVFNTIQSQVD Trigger: GTCAACCTGGCTCTGGATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGAGCTGTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS TCA 90 bp | AGCTTCTCAGCGATCTGCTCAGGAAAGCCGATGAGGGAATCAATGTaGTCAACATTGTCGGAGATGAAGCCCAGCACCAGACTGAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: SFSAICSGKPMRESM*STLSEMKPSTRLKR Trigger: CCTCTTCAGTCTGGTGCTGGGCTTCATCTCCGACAATGTTGATCACATTGATTCCCTCATCGGCTTTCCTGAGCAGATCGCTGAGAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS GCA 90 bp | CTCTCGGGTGTACGTGAAGATAAAGTGATCGGTCTTCTCTTTCTGTaGAGTGTCGTCTTCCCTGTTCATGCACAGCTCCACGGAAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: LSGVREDKVIGLLFL*SVVFPVHAQLHGKA Trigger: GGCTTTTCCGTGGAGCTGTGCATGAACAGGGAAGACGACACTGCACAGAAAGAGAAGACCGATCACTTTATCTTCACGTACACCCGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS CCA 90 bp | GTTCATGCACAGCTCCACGGAAAAGCCTTTGGGAAAGAGTCTGAATaGTCGTGGCTTCTGCAGGCTGTTTTTAACACCATCCAGAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VHAQLHGKAFGKESE*SWLLQAVFNTIQSQ Trigger: CTGGCTCTGGATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGAGCTGTGCATGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS TCA 90 bp | GCAGAGTATCGCAGATTCCCCTCTCGGGTGTACGTGAAGATAAAGTaGTCGGTCTTCTCTTTCTGTGCAGTGTCGTCTTCCCTGTTCATG | + |
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Preference number: 5 (lower is better) Translates to: AEYRRFPSRVYVKIK*SVFSFCAVSSSLFM Trigger: CATGAACAGGGAAGACGACACTGCACAGAAAGAGAAGACCGATCACTTTATCTTCACGTACACCCGAGAGGGGAATCTGCGATACTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS GCA 90 bp | TCCACGGAAAAGCCTTTGGGAAAGAGTCTGAATGGTCGTGGCTTCTaGAGGCTGTTTTTAACACCATCCAGAGCCAGGTTGACCATGTGT | + |
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Preference number: 5 (lower is better) Translates to: STEKPLGKSLNGRGF*RLFLTPSRARLTMC Trigger: ACACATGGTCAACCTGGCTCTGGATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS-3UTR CAA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAACCATCCAGAGCCAGGTaGACCATGTGTAGCTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: SRTTKVEISACYANAIGKPSRAR*TMCSCP Trigger: TGGGCAGCTACACATGGTCAACCTGGCTCTGGATGG...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CAA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAACTGGACAGAGCTTCATaGGTGAGGTGTTCTAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: SRTTKVEISACYANAIGKLDRAS*VRCSRS Trigger: GCTTCTAGAACACCTCACCAATGAAGCTCTGTCCAG...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CAA 90 bp | CGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCTCCTGCTCTGACTCCTaGAAAGCTCTCTTCTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: RTTKVEISACYANAIGKSSCSDS*KALFLL Trigger: GAGCAAGAAGAGAGCTTTCAAGGAGTCAGAGCAGGA...GGATTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CAA 90 bp | TCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACCAGATTCTGGTAGAAGTATaGAGCTGCCTTTCGAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: SACYANAIGKSKPKENHQILVEV*SCLSRL Trigger: GAGCCTCGAAAGGCAGCTCAATACTTCTACCAGAAT...CTGGTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CAA 90 bp | TCCCGCACCACAAAAGTAGAAATATCTGCTTGCTATGCTAATGCCATAGGTAAATCTTCTTGCTCTTCTTaGATTCTTGGCTCAACAGTG | + |
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Preference number: 5 (lower is better) Translates to: SRTTKVEISACYANAIGKSSCSS*ILGSTV Trigger: CACTGTTGAGCCAAGAATCAAAGAAGAGCAAGAAGA...TTTACCTATGGCATTAGCATAGCAAGCAGATATTTCTACTTTTGTGGTGCGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS-3UTR CAA 90 bp | ATATCTGCTTGCTATGCTAATGCCATAGGTAAATCCAAACCAAAAGAAAATCACTCCACGGAAAAGCCTTaGGGAAAGAGTCTGAATGGT | + |
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Preference number: 5 (lower is better) Translates to: ISACYANAIGKSKPKENHSTEKP*GKSLNG Trigger: ACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGA...GTGATTTTCTTTTGGTTTGGATTTACCTATGGCATTAGCATAGCAAGCAGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CCA 72 bp | TCCACAGCCAGACACACACACTTCTGCTTGGCCGACTaGGGCGAGCTCTGCTCCTGCTCTGACTCCTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: STARHTHFCLAD*GELCSCSDSLK Trigger: TTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGCCAAGCAGAAGTGTGTGTGTCTGGCTGTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 72 bp | CACTTCTGCTTGGCCGACTGGGGCGAGCTCTGCTCCTaGTCTGACTCCTTGAAAGCTCTCTTCTTGCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: HFCLADWGELCS*SDSLKALFLLF Trigger: GAAGAGCAAGAAGAGAGCTTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGCCAAGCAGAAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 72 bp | CACACACACTTCTGCTTGGCCGACTGGGGCGAGCTCTaGTCCTGCTCTGACTCCTTGAAAGCTCTCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: HTHFCLADWGEL*SCSDSLKALFL Trigger: CAAGAAGAGAGCTTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGCCAAGCAGAAGTGTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CAA 90 bp | TTGAGCAAATCCCAATCTTCCACAGCCAGACACACACACTTCTGCTaGGCCGACTGGGGCGAGCTCTGCTCCTGCTCTGACTCCTTGAAA | + |
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Preference number: 6 (lower is better) Translates to: LSKSQSSTARHTHFC*ADWGELCSCSDSLK Trigger: TTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGCCAAGCAGAAGTGTGTGTGTCTGGCTGTGGAAGATTGGGATTTGCTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CAA 72 bp | GCCGACTGGGGCGAGCTCTGCTCCTGCTCTGACTCCTaGAAAGCTCTCTTCTTGCTCTTCTTTGATTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: ADWGELCSCSDS*KALFLLFFDSW Trigger: CCAAGAATCAAAGAAGAGCAAGAAGAGAGCTTTCAAGGAGTCAGAGCAGGAGCAGAGCTCGCCCCAGTCGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CAA 72 bp | TCTTCCCTGTTCATGCACAGCTCCACGGAAAAGCCTTaGGGAAAGAGTCTGAATGGTCGTGGCTTCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SSLFMHSSTEKP*GKSLNGRGFCR Trigger: CCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGAGCTGTGCATGAACAGGGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS CAA 90 bp | GCAGTGTCGTCTTCCCTGTTCATGCACAGCTCCACGGAAAAGCCTTaGGGAAAGAGTCTGAATGGTCGTGGCTTCTGCAGGCTGTTTTTA | + |
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Preference number: 6 (lower is better) Translates to: AVSSSLFMHSSTEKP*GKSLNGRGFCRLFL Trigger: TAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGAGCTGTGCATGAACAGGGAAGACGACACTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS CAA 90 bp | AGCCAGCAACAGGAGAGGTCTAGACGGGTCAGCTCCCGGAAAGACTaGATCTCTTCAAGCTTTTCTGCAACCACCAAATACCTGTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: SQQQERSRRVSSRKD*ISSSFSATTKYLFR Trigger: GCGAAACAGGTATTTGGTGGTTGCAGAAAAGCTTGAAGAGATCAAGTCTTTCCGGGAGCTGACCCGTCTAGACCTCTCCTGTTGCTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS TCA 72 bp | CGCAGATTCCCCTCTCGGGTGTACGTGAAGATAAAGTaGTCGGTCTTCTCTTTCTGTGCAGTGTCGTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: RRFPSRVYVKIK*SVFSFCAVSSS Trigger: GGAAGACGACACTGCACAGAAAGAGAAGACCGATCACTTTATCTTCACGTACACCCGAGAGGGGAATCTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS TCA 72 bp | GCGATCTGCTCAGGAAAGCCGATGAGGGAATCAATGTaGTCAACATTGTCGGAGATGAAGCCCAGCACCAGA | + |
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Preference number: 6 (lower is better) Translates to: AICSGKPMRESM*STLSEMKPSTR Trigger: TCTGGTGCTGGGCTTCATCTCCGACAATGTTGATCACATTGATTCCCTCATCGGCTTTCCTGAGCAGATCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS GCA 72 bp | AAGCCTTTGGGAAAGAGTCTGAATGGTCGTGGCTTCTaGAGGCTGTTTTTAACACCATCCAGAGCCAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: KPLGKSLNGRGF*RLFLTPSRARL Trigger: CAACCTGGCTCTGGATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS GCA 72 bp | TCTTCTCTTTCTGTGCAGTGTCGTCTTCCCTGTTCATaGACAGCTCCACGGAAAAGCCTTTGGGAAAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: SSLSVQCRLPCS*TAPRKSLWERV Trigger: GACTCTTTCCCAAAGGCTTTTCCGTGGAGCTGTGCATGAACAGGGAAGACGACACTGCACAGAAAGAGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS GCA 72 bp | GACAGAGCTTCATTGGTGAGGTGTTCTAGAAGCTCATaGTCATCTCCAAGCCAGCAACAGGAGAGGTCTAGA | + |
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Preference number: 6 (lower is better) Translates to: DRASLVRCSRSS*SSPSQQQERSR Trigger: TCTAGACCTCTCCTGTTGCTGGCTTGGAGATGAGCATGAGCTTCTAGAACACCTCACCAATGAAGCTCTGTC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 72 bp | GAACTGGAGTTTTCCAGAAGAGTTCATGTGGGTCTCTaGGAGGGGACATTTCCTTGTAACTTCTGTGCGAGC | + |
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Preference number: 6 (lower is better) Translates to: ELEFSRRVHVGL*EGTFPCNFCAS Trigger: GCTCGCACAGAAGTTACAAGGAAATGTCCCCTCGCAGAGACCCACATGAACTCTTCTGGAAAACTCCAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CCA 72 bp | CACGGAAAAGCCTTTGGGAAAGAGTCTGAATGGTCGTaGCTTCTGCAGGCTGTTTTTAACACCATCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: HGKAFGKESEWS*LLQAVFNTIQS Trigger: GCTCTGGATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS CCA 72 bp | CAGCTCCACGGAAAAGCCTTTGGGAAAGAGTCTGAATaGTCGTGGCTTCTGCAGGCTGTTTTTAACACCATC | + |
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Preference number: 6 (lower is better) Translates to: QLHGKAFGKESE*SWLLQAVFNTI Trigger: GATGGTGTTAAAAACAGCCTGCAGAAGCCACGACCATTCAGACTCTTTCCCAAAGGCTTTTCCGTGGAGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS CAA 72 bp | CAGGAGAGGTCTAGACGGGTCAGCTCCCGGAAAGACTaGATCTCTTCAAGCTTTTCTGCAACCACCAAATAC | + |
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Preference number: 6 (lower is better) Translates to: QERSRRVSSRKD*ISSSFSATTKY Trigger: GTATTTGGTGGTTGCAGAAAAGCTTGAAGAGATCAAGTCTTTCCGGGAGCTGACCCGTCTAGACCTCTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 72 bp | GTACGTGAAGATAAAGTGATCGGTCTTCTCTTTCTGTaGAGTGTCGTCTTCCCTGTTCATGCACAGCTCCAC | + |
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Preference number: 6 (lower is better) Translates to: VREDKVIGLLFL*SVVFPVHAQLH Trigger: GTGGAGCTGTGCATGAACAGGGAAGACGACACTGCACAGAAAGAGAAGACCGATCACTTTATCTTCACGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000156771.2 |
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| CDS GCA 72 bp | CAGCTCCCGGAAAGACTTGATCTCTTCAAGCTTTTCTaGAACCACCAAATACCTGTTTCGCAAGCACAGCGA | + |
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Preference number: 6 (lower is better) Translates to: QLPERLDLFKLF*NHQIPVSQAQR Trigger: TCGCTGTGCTTGCGAAACAGGTATTTGGTGGTTGCAGAAAAGCTTGAAGAGATCAAGTCTTTCCGGGAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS GCA 72 bp | CTTCAAAGGCACTTTGGAGTGAACAAGGCCTATGTTTaGCCGGAGCTTGTCCTTAACGGCTTTGATGTCCTT | + |
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Preference number: 6 (lower is better) Translates to: LQRHFGVNKAYV*PELVLNGFDVL Trigger: AAGGACATCAAAGCCGTTAAGGACAAGCTCCGGGCAAACATAGGCCTTGTTCACTCCAAAGTGCCTTTGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000144176.2 |
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| CDS GCA 72 bp | TTTTCATCACCCGCACTGGTGCTGTCATTTTCCGAATaGCTGCATCAGATAAGCAATTATCCTTCAAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: FSSPALVLSFSE*LHQISNYPSSG Trigger: TCCACTTGAAGGATAATTGCTTATCTGATGCAGGCATTCGGAAAATGACAGCACCAGTGCGGGTGATGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030360.11 |
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| CDS CCA 72 bp | TGCAGTTACTATGATCAAATTCCTTCAAAGGCACTTTaGAGTGAACAAGGCCTATGTTTGCCCGGAGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: CSYYDQIPSKAL*SEQGLCLPGAC Trigger: ACAAGCTCCGGGCAAACATAGGCCTTGTTCACTCCAAAGTGCCTTTGAAGGAATTTGATCATAGTAACTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030360.11 ENSMUST00000144176.2 |
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| CDS CAA 90 bp | GCGAGGGGACATTTCCTTGTAACTTCTGTGCGAGCTCGATTCTGGTaGGGTTCAGTGAGTCTAACAATAACCAATTTTCTTAATTTCCTA | + |
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Preference number: 6 (lower is better) Translates to: ARGHFLVTSVRARFW*GSVSLTITNFLNFL Trigger: TAGGAAATTAAGAAAATTGGTTATTGTTAGACTCACTGAACCCAACCAGAATCGAGCTCGCACAGAAGTTACAAGGAAATGTCCCCTCGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000144176.2 |
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