Pregenerated sensors for LRRC38 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028584Ensembl transcript IDs: ENSMUST00000052458.3
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGGGAGGCTGGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCTaGGTCTCTACTCTGCTGATTCTATACGCTGGGATCGGCTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: PGRLALLKSESLHPS*VSTLLILYAGIGCP Trigger: GGGACAGCCGATCCCAGCGTATAGAATCAGCAGAGTAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR GCA 90 bp | TTGATTATCTTCACACACGAGTCCCCCAGCCTGGGAGGCTGGCTCTaGTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCTCTACTCTGC | + |
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Preference number: 1 (lower is better) Translates to: LIIFTHESPSLGGWL*LRVNLSILPASLLC Trigger: GCAGAGTAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAAGATAATCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR CCA 90 bp | CCTGAATTGATTATCTTCACACACGAGTCCCCCAGCCTGGGAGGCTaGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCTCTA | + |
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Preference number: 1 (lower is better) Translates to: PELIIFTHESPSLGG*LCLRVNLSILPASL Trigger: TAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAAGATAATCAATTCAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR TCA 90 bp | AAGGCTCCTGGGATCTTCTATAGAAGAAAACGATTCCTGCTCCTGTaGAGAAGGAGCTCGACACGAATCTACACTGAGAACACTACTGTC | + |
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Preference number: 1 (lower is better) Translates to: KAPGIFYRRKRFLLL*RRSSTRIYTENTTV Trigger: GACAGTAGTGTTCTCAGTGTAGATTCGTGTCGAGCTCCTTCTTCACAGGAGCAGGAATCGTTTTCTTCTATAGAAGATCCCAGGAGCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR GCA 90 bp | AACATCTCAAGGCTCCTGGGATCTTCTATAGAAGAAAACGATTCCTaGTCCTGTGAAGAAGGAGCTCGACACGAATCTACACTGAGAACA | + |
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Preference number: 1 (lower is better) Translates to: NISRLLGSSIEENDS*SCEEGARHESTLRT Trigger: TGTTCTCAGTGTAGATTCGTGTCGAGCTCCTTCTTCACAGGAGCAGGAATCGTTTTCTTCTATAGAAGATCCCAGGAGCCTTGAGATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR-3UTR GCA 90 bp | CTGTCCCCAGCGGGTGCATCTAGGCAAGCTCCATCCCGTTTACTGCCTGGAGTGTCTCCCTTGGAGAGGTaGCACTGGCTGAGTGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: LSPAGASRQAPSRLLPGVSPLER*HWLSVG Trigger: TCCCACACTCAGCCAGTGGCACCTCTCCAAGGGAGA...CACTCCAGGCAGTAAACGGGATGGAGCTTGCCTAGATGCACCCGCTGGGGACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR-3UTR TCA 90 bp | GTTCCTGTGAGAGACCCCTTCCTGGTTCATAGACCCTCTCACTGGGTCCTCACTGCGTCTCTACTCTGCTaGTTCTATACGCTGGGATCG | + |
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Preference number: 2 (lower is better) Translates to: VPVRDPFLVHRPSHWVLTASLLC*FYTLGS Trigger: CGATCCCAGCGTATAGAATCAGCAGAGTAGAGACGC...AGTGAGGACCCAGTGAGAGGGTCTATGAACCAGGAAGGGGTCTCTCACAGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR-3UTR TCA 90 bp | CACTACTGTCTTTCATGGGGAAGAGGGCTCATGGTCCATTGTGCAACTTGTAATAGAGGTGCCACTGGCTaGGTGTGGGAAAGCAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: HYCLSWGRGLMVHCATCNRGATG*VWESKE Trigger: CTCTTTGCTTTCCCACACTCAGCCAGTGGCACCTCT...ATTACAAGTTGCACAATGGACCATGAGCCCTCTTCCCCATGAAAGACAGTAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR-3UTR TCA 90 bp | AGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAGTTTACTGCCTGGAGTaGTGTGATGCTCCTGTCTTC | + |
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Preference number: 2 (lower is better) Translates to: RQTLSMANRCVCSWSNISVYCLE*CDAPVF Trigger: GAAGACAGGAGCATCACATCACTCCAGGCAGTAAAC...TGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR-3UTR CAA 90 bp | CTTCACACACGAGTCCCCCAGCCTGGGAGGCTGGCTCTGCTTAAGAGTGAATCTCAGCATCAGTCTCCCTaGGAGAGGTGCCACTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: LHTRVPQPGRLALLKSESQHQSP*ERCHWL Trigger: CAGCCAGTGGCACCTCTCCAAGGGAGACTGATGCTG...AGATTCACTCTTAAGCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR GCA 72 bp | TGCTCCTGTCTTCAGCATCAGTCTCCCTTGGAGAGGTaGCACTGGCTGAGTGTGGGAAAGCAAAGAGCGGGA | + |
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Preference number: 3 (lower is better) Translates to: CSCLQHQSPLER*HWLSVGKQRAG Trigger: TCCCGCTCTTTGCTTTCCCACACTCAGCCAGTGGCACCTCTCCAAGGGAGACTGATGCTGAAGACAGGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR GCA 72 bp | TTCACACACGAGTCCCCCAGCCTGGGAGGCTGGCTCTaGTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCT | + |
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Preference number: 3 (lower is better) Translates to: FTHESPSLGGWL*LRVNLSILPAS Trigger: AGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR TCA 72 bp | CATCTAGGCAAGCTCCATCCCGTTTACTGCCTGGAGTaGTGTGATGCTCCTGTCTTCAGCATCAGTCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: HLGKLHPVYCLE*CDAPVFSISLP Trigger: AGGGAGACTGATGCTGAAGACAGGAGCATCACATCACTCCAGGCAGTAAACGGGATGGAGCTTGCCTAGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR CCA 72 bp | ATTATCTTCACACACGAGTCCCCCAGCCTGGGAGGCTaGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCT | + |
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Preference number: 3 (lower is better) Translates to: IIFTHESPSLGG*LCLRVNLSILP Trigger: AGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAAGATAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR TCA 72 bp | GCTCCTGTGAAGAAGGAGCTCGACACGAATCTACACTaGGAACACTACTGTCTTTCATGGGGAAGAGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: APVKKELDTNLH*EHYCLSWGRGL Trigger: GAGCCCTCTTCCCCATGAAAGACAGTAGTGTTCTCAGTGTAGATTCGTGTCGAGCTCCTTCTTCACAGGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR TCA 72 bp | TCACTGGATAGAAGGGACAGGGAGGCCCCCAAAGTCTaGTTTATAAGGGCAGTAAATGCACTCGGTCTCAAG | + |
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Preference number: 3 (lower is better) Translates to: SLDRRDREAPKV*FIRAVNALGLK Trigger: CTTGAGACCGAGTGCATTTACTGCCCTTATAAATCAGACTTTGGGGGCCTCCCTGTCCCTTCTATCCAGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR GCA 72 bp | AGGCTCCTGGGATCTTCTATAGAAGAAAACGATTCCTaGTCCTGTGAAGAAGGAGCTCGACACGAATCTACA | + |
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Preference number: 3 (lower is better) Translates to: RLLGSSIEENDS*SCEEGARHEST Trigger: TGTAGATTCGTGTCGAGCTCCTTCTTCACAGGAGCAGGAATCGTTTTCTTCTATAGAAGATCCCAGGAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR CCA 72 bp | GAGAACACTACTGTCTTTCATGGGGAAGAGGGCTCATaGTCCATTGTGCAACTTGTAATAAGAACGGCCCAA | + |
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Preference number: 3 (lower is better) Translates to: ENTTVFHGEEGS*SIVQLVIRTAQ Trigger: TTGGGCCGTTCTTATTACAAGTTGCACAATGGACCATGAGCCCTCTTCCCCATGAAAGACAGTAGTGTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR-3UTR CAA 90 bp | GCAGCAACACAGGGGAGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTGCCATGAAGCCTGAATaGATTATCTTCACACACGAG | + |
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Preference number: 3 (lower is better) Translates to: AATQGRQTLSMANRCVCSAMKPE*IIFTHE Trigger: CTCGTGTGTGAAGATAATCAATTCAGGCTTCATGGC...AGAACAAACACATCTATTTGCCATAGACAATGTCTGTCTCCCCTGTGTTGCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | GCATCAGTCTCCCTTGGAGAGGTGCCACTGGCTGAGTGTGGGAAAGCAAAGAGCGCTTGCCCGAGCCGCTaGACGTGCCCTCCTCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: ASVSLGEVPLAECGKAKSACPSR*TCPPPA Trigger: CGCTGGAGGAGGGCACGTTCAGCGGCTCGGGCAAGC...GCTCTTTGCTTTCCCACACTCAGCCAGTGGCACCTCTCCAAGGGAGACTGATGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | ATAGACCCTCTCACTGGGTCCTCACTGGATAGAAGGGACAGGGAGGCCCCCAAATGGCCAGGCTCAGCTTaGCCAGCCTCCCCGCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: IDPLTGSSLDRRDREAPKWPGSA*PASPPS Trigger: GCTCGGCGGGGAGGCTGGTCAAGCTGAGCCTGGCCA...TTTGGGGGCCTCCCTGTCCCTTCTATCCAGTGAGGACCCAGTGAGAGGGTCTAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | TCTATACGCTGGGATCGGCTGTCCCCAGCGGGTGCATCTAGGCAAGCTCCATCCAAGTCCTCGGGGATCTaGTGGATGCGGTTGCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: SIRWDRLSPAGASRQAPSKSSGI*WMRLPA Trigger: GGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTT...GGATGGAGCTTGCCTAGATGCACCCGCTGGGGACAGCCGATCCCAGCGTATAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | GCATCAGTCTCCCTTGGAGAGGTGCCACTGGCTGAGTGTGGGAAAGCAAAGAGCCGGGGATCTGCTGGATaGGGTTGCCGGCCACTAGCA | + |
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Preference number: 4 (lower is better) Translates to: ASVSLGEVPLAECGKAKSRGSAG*GCRPLA Trigger: TGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCG...GCTCTTTGCTTTCCCACACTCAGCCAGTGGCACCTCTCCAAGGGAGACTGATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | CTGTCCCCAGCGGGTGCATCTAGGCAAGCTCCATCCCGTTTACTGCCTGGAGTGTGTACACCGGCCAGATaGTTGTTGGCCAGGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LSPAGASRQAPSRLLPGVCTPAR*LLARLS Trigger: GCTGAGCCTGGCCAACAACCATCTGGCCGGTGTACA...CACTCCAGGCAGTAAACGGGATGGAGCTTGCCTAGATGCACCCGCTGGGGACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | TCGACACGAATCTACACTGAGAACACTACTGTCTTTCATGGGGAAGAGGGCTCAAGGGATCGGGCACGCTaGGCAGCCCGCGATCGCGAC | + |
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Preference number: 4 (lower is better) Translates to: STRIYTENTTVFHGEEGSRDRAR*AARDRD Trigger: GTCGCGATCGCGGGCTGCCCAGCGTGCCCGATCCCT...TGAGCCCTCTTCCCCATGAAAGACAGTAGTGTTCTCAGTGTAGATTCGTGTCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | GGAGGCTGGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCTCTACTCTCCTCGGGGATCTGCTaGATGCGGTTGCCGGCCACT | + |
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Preference number: 4 (lower is better) Translates to: GGWLCLRVNLSILPASLLSSGIC*MRLPAT Trigger: AGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGA...GAGTAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | CCTGAATTGATTATCTTCACACACGAGTCCCCCAGCCTGGGAGGCTGGCTCTGCGCAGGTTGTTGTCGTTaGGTTCCAGCACCTGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: PELIIFTHESPSLGGWLCAGCCR*VPAPAR Trigger: CCTTGCAGGTGCTGGAACTCAACGACAACAACCTGC...GCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAAGATAATCAATTCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | GGAGGCTGGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCTCTACTCTCTGCTGGATGCGGTTaGCGGCCACTAGCAGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: GGWLCLRVNLSILPASLLSAGCG*RPLAAC Trigger: GCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGA...GAGTAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | GCAGCAACACAGGGGAGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTCGGTATGGGGGTCGGTaGAAGCACAGCCCGCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: AATQGRQTLSMANRCVCSRYGGR*KHSPRG Trigger: GCCCCGCGGGCTGTGCTTGCACCGACCCCCATACCG...AGAACAAACACATCTATTTGCCATAGACAATGTCTGTCTCCCCTGTGTTGCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| 3UTR CAA 72 bp | GCTCAGGTCATCGCGCATCAACCCACGTTCATCACGTaGGGTGTGAGATATCATTGCAGCAACACAGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: AQVIAHQPTFIT*GVRYHCSNTGE Trigger: CTCCCCTGTGTTGCTGCAATGATATCTCACACCCAACGTGATGAACGTGGGTTGATGCGCGATGACCTGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | CACTACTGTCTTTCATGGGGAAGAGGGCTCATGGTCCATTGTGCAACTTGTAATCGGCCCCCAGCTGGGTaGGGTTGTTGTAGCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HYCLSWGRGLMVHCATCNRPPAG*GCCSSG Trigger: ACCTGAGCTACAACAACCTCACCCAGCTGGGGGCCG...ATTACAAGTTGCACAATGGACCATGAGCCCTCTTCCCCATGAAAGACAGTAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | TCGACACGAATCTACACTGAGAACACTACTGTCTTTCATGGGGAAGAGGGCTCAGTCCTCCATGGGCAGTaGACACTGGATGGCATCGAG | + |
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Preference number: 4 (lower is better) Translates to: STRIYTENTTVFHGEEGSVLHGQ*TLDGIE Trigger: CTCGATGCCATCCAGTGTTCACTGCCCATGGAGGAC...TGAGCCCTCTTCCCCATGAAAGACAGTAGTGTTCTCAGTGTAGATTCGTGTCGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | CACAGGGGAGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTACGGCCACTAGCAGCTTaGGCACGTCCAGGGGGAAGG | + |
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Preference number: 4 (lower is better) Translates to: HRGDRHCLWQIDVFVLGLRPLAA*ARPGGR Trigger: CCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCG...TAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTCTCCCCTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | CACTACTGTCTTTCATGGGGAAGAGGGCTCATGGTCCATTGTGCAACTTGTAATCGACAGTCCACGGTATaGGGGTCGGTGCAAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: HYCLSWGRGLMVHCATCNRQSTV*GSVQAQ Trigger: CTGTGCTTGCACCGACCCCCATACCGTGGACTGTCG...ATTACAAGTTGCACAATGGACCATGAGCCCTCTTCCCCATGAAAGACAGTAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | AACACTACTGTCTTTCATGGGGAAGAGGGCTCATGGTCCATTGTGCAACTTGTACCCTCCGGTCCTCCATaGGCAGTGAACACTGGATGG | + |
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Preference number: 4 (lower is better) Translates to: NTTVFHGEEGSWSIVQLVPSGPP*AVNTGW Trigger: CCATCCAGTGTTCACTGCCCATGGAGGACCGGAGGG...TACAAGTTGCACAATGGACCATGAGCCCTCTTCCCCATGAAAGACAGTAGTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | TCGACACGAATCTACACTGAGAACACTACTGTCTTTCATGGGGAAGAGGGCTCAAACACTGCACCACAGTaGCCAGGAAGAAGCTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: STRIYTENTTVFHGEEGSNTAPQ*PGRSWR Trigger: TCTCCAGCTTCTTCCTGGCCACTGTGGTGCAGTGTT...TGAGCCCTCTTCCCCATGAAAGACAGTAGTGTTCTCAGTGTAGATTCGTGTCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | TCGACACGAATCTACACTGAGAACACTACTGTCTTTCATGGGGAAGAGGGCTCAGATCTCCATGGAAGATaGAGAAGTCCTCGGGGATCT | + |
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Preference number: 4 (lower is better) Translates to: STRIYTENTTVFHGEEGSDLHGR*RSPRGS Trigger: AGATCCCCGAGGACTTCTTCATCTTCCATGGAGATC...TGAGCCCTCTTCCCCATGAAAGACAGTAGTGTTCTCAGTGTAGATTCGTGTCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | GCAGCAACACAGGGGAGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTTAGGGGCGCACCTCTaGAAACACTGCACCACAGTG | + |
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Preference number: 4 (lower is better) Translates to: AATQGRQTLSMANRCVCSLGAHL*KHCTTV Trigger: CACTGTGGTGCAGTGTTTCCAGAGGTGCGCCCCTAA...AGAACAAACACATCTATTTGCCATAGACAATGTCTGTCTCCCCTGTGTTGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | GACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAACCAAAGCCGCCACGTTaGGGCTGCGCAGGTTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: DRHCLWQIDVFVLGLTSQPKPPR*GCAGCC Trigger: ACAACAACCTGCGCAGCCTCAACGTGGCGGCTTTGG...TTGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | GCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAAGGCTCCTGGGATCTTCTGGAAGAAGCTGGAGATaGTGGCAGCAATGGACACAG | + |
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Preference number: 4 (lower is better) Translates to: ANRCVCSWSNISRLLGSSGRSWR*WQQWTQ Trigger: CTGTGTCCATTGCTGCCATCATCTCCAGCTTCTTCC...AGAAGATCCCAGGAGCCTTGAGATGTTAGACCAAGAACAAACACATCTATTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | AGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCATTGAGTTCCAGCACCTaGAAGGACTCCAGGCTCTCG | + |
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Preference number: 4 (lower is better) Translates to: RQTLSMANRCVCSWSNISLSSST*KDSRLS Trigger: CGAGAGCCTGGAGTCCTTGCAGGTGCTGGAACTCAA...TGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR GCA 90 bp | GACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAACACCTCTGGAAACACTaGACCACAGTGGCCAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: DRHCLWQIDVFVLGLTSQHLWKH*TTVARK Trigger: CTTCCTGGCCACTGTGGTGCAGTGTTTCCAGAGGTG...TTGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CCA 90 bp | TGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAAGGCTCCTGGTACACCAGATCTCCATaGAAGATGAAGAAGTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: CLWQIDVFVLGLTSQGSWYTRSP*KMKKSS Trigger: CGAGGACTTCTTCATCTTCCATGGAGATCTGGTGTA...CCAGGAGCCTTGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR TCA 90 bp | AGACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAGCAGCGAGTTGTTCCTaGAATCCAGATACACCAGAT | + |
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Preference number: 4 (lower is better) Translates to: RQTLSMANRCVCSWSNISAASCS*NPDTPD Trigger: ATCTGGTGTATCTGGATTTCAGGAACAACTCGCTGC...TGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 90 bp | CGCTGGGCAGCCCGCGATCGCGACAGTCCACGGTATGGGGGTCGGTaGAAGCACAGCCCGCGGGGCACGCGCGTCCCGGCCCGAGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RWAARDRDSPRYGGR*KHSPRGTRVPARAA Trigger: TGCTGCTCGGGCCGGGACGCGCGTGCCCCGCGGGCTGTGCTTGCACCGACCCCCATACCGTGGACTGTCGCGATCGCGGGCTGCCCAGCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 90 bp | GGATCGGGCACGCTGGGCAGCCCGCGATCGCGACAGTCCACGGTATaGGGGTCGGTGCAAGCACAGCCCGCGGGGCACGCGCGTCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: GSGTLGSPRSRQSTV*GSVQAQPAGHARPG Trigger: GCCGGGACGCGCGTGCCCCGCGGGCTGTGCTTGCACCGACCCCCATACCGTGGACTGTCGCGATCGCGGGCTGCCCAGCGTGCCCGATCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS TCA 90 bp | CAGCCTCATGTACACCGGCCAGATGGTTGTTGGCCAGGCTCAGCTTaGCCAGCCTCCCCGCCGAGCGGAAGGCGCCGGCCCCCAGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: QPHVHRPDGCWPGSA*PASPPSGRRRPPAG Trigger: CCCAGCTGGGGGCCGGCGCCTTCCGCTCGGCGGGGAGGCTGGTCAAGCTGAGCCTGGCCAACAACCATCTGGCCGGTGTACATGAGGCTG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 90 bp | AGTCCTCGGGGATCTGCTGGATGCGGTTGCCGGCCACTAGCAGCTTaGGCACGTCCAGGGGGAAGGGATCGGGCACGCTGGGCAGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: SPRGSAGCGCRPLAA*ARPGGRDRARWAAR Trigger: GCGGGCTGCCCAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 90 bp | CCACTAGCAGCTTGCGCACGTCCAGGGGGAAGGGATCGGGCACGCTaGGCAGCCCGCGATCGCGACAGTCCACGGTATGGGGGTCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: PLAACARPGGRDRAR*AARDRDSPRYGGRC Trigger: GCACCGACCCCCATACCGTGGACTGTCGCGATCGCGGGCTGCCCAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 90 bp | ACAGTCACACAGCCAGGGGTTCCCGTCCAGGCGCACAGTGCGCAGTaGCGGCAGCGCATCCAAAGCCGCCACGTTGAGGCTGCGCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: TVTQPGVPVQAHSAQ*RQRIQSRHVEAAQV Trigger: AACCTGCGCAGCCTCAACGTGGCGGCTTTGGATGCGCTGCCGGCACTGCGCACTGTGCGCCTGGACGGGAACCCCTGGCTGTGTGACTGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 90 bp | GCCACGTTGAGGCTGCGCAGGTTGTTGTCGTTGAGTTCCAGCACCTaGAAGGACTCCAGGCTCTCGAAGGCAGCCTCATGTACACCGGCC | + |
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Preference number: 5 (lower is better) Translates to: ATLRLRRLLSLSSST*KDSRLSKAASCTPA Trigger: GGCCGGTGTACATGAGGCTGCCTTCGAGAGCCTGGAGTCCTTGCAGGTGCTGGAACTCAACGACAACAACCTGCGCAGCCTCAACGTGGC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | TCTATACGCTGGGATCGGCTGTCCCCAGCGGGTGCATCTAGGCAAGCTCCATCCTCCAAAGCCGCCACGTaGAGGCTGCGCAGGTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: SIRWDRLSPAGASRQAPSSKAAT*RLRRLL Trigger: CAACAACCTGCGCAGCCTCAACGTGGCGGCTTTGGA...GGATGGAGCTTGCCTAGATGCACCCGCTGGGGACAGCCGATCCCAGCGTATAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 90 bp | TACACCAGATCTCCATGGAAGATGAAGAAGTCCTCGGGGATCTGCTaGATGCGGTTGCCGGCCACTAGCAGCTTGCGCACGTCCAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: YTRSPWKMKKSSGIC*MRLPATSSLRTSRG Trigger: CCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGATCTGGTGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | GGAGGCTGGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCTCTACTCCCGGCCACTAGCAGCTaGCGCACGTCCAGGGGGAAG | + |
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Preference number: 5 (lower is better) Translates to: GGWLCLRVNLSILPASLLPATSS*RTSRGK Trigger: CTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGG...GAGTAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 90 bp | CCCTCAGGGCCACCCTCCGGTCCTCCATGGGCAGTGAACACTGGATaGCATCGAGGCCTTTGGGCAATTTGGATGTGTTCTCCTGAATCC | + |
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Preference number: 5 (lower is better) Translates to: PSGPPSGPPWAVNTG*HRGLWAIWMCSPES Trigger: GGATTCAGGAGAACACATCCAAATTGCCCAAAGGCCTCGATGCCATCCAGTGTTCACTGCCCATGGAGGACCGGAGGGTGGCCCTGAGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | ATAGACCCTCTCACTGGGTCCTCACTGGATAGAAGGGACAGGGAGGCCCCCAAAATCTGCTGGATGCGGTaGCCGGCCACTAGCAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: IDPLTGSSLDRRDREAPKICWMR*PATSSL Trigger: CAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGAT...TTTGGGGGCCTCCCTGTCCCTTCTATCCAGTGAGGACCCAGTGAGAGGGTCTAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 90 bp | AGATACACCAGATCTCCATGGAAGATGAAGAAGTCCTCGGGGATCTaGTGGATGCGGTTGCCGGCCACTAGCAGCTTGCGCACGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: RYTRSPWKMKKSSGI*WMRLPATSSLRTSR Trigger: CCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGATCTGGTGTATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | CCTGAATTGATTATCTTCACACACGAGTCCCCCAGCCTGGGAGGCTGGCTCTGCAGCGAGCGCAGCGAGTaGTTCCTGAAATCCAGATAC | + |
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Preference number: 5 (lower is better) Translates to: PELIIFTHESPSLGGWLCSERSE*FLKSRY Trigger: GTATCTGGATTTCAGGAACAACTCGCTGCGCTCGCT...GCAGAGCCAGCCTCCCAGGCTGGGGGACTCGTGTGTGAAGATAATCAATTCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | GGAGGCTGGCTCTGCTTAAGAGTGAATCTCTCCATCCTTCCTGCGTCTCTACTCAGGCTGCGCAGGTTGTaGTCGTTGAGTTCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: GGWLCLRVNLSILPASLLRLRRL*SLSSST Trigger: GGTGCTGGAACTCAACGACAACAACCTGCGCAGCCT...GAGTAGAGACGCAGGAAGGATGGAGAGATTCACTCTTAAGCAGAGCCAGCCTCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 90 bp | GAGCGCAGCGAGTTGTTCCTGAAATCCAGATACACCAGATCTCCATaGAAGATGAAGAAGTCCTCGGGGATCTGCTGGATGCGGTTGCCG | + |
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Preference number: 5 (lower is better) Translates to: ERSELFLKSRYTRSP*KMKKSSGICWMRLP Trigger: CGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGATCTGGTGTATCTGGATTTCAGGAACAACTCGCTGCGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 90 bp | TCATCATCATCCTCATCTTCCGTGTCCTTGTTAGGGGCGCACCTCTaGAAACACTGCACCACAGTGGCCAGGAAGAAGCTGGAGATGATG | + |
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Preference number: 5 (lower is better) Translates to: SSSSSSSVSLLGAHL*KHCTTVARKKLEMM Trigger: CATCATCTCCAGCTTCTTCCTGGCCACTGTGGTGCAGTGTTTCCAGAGGTGCGCCCCTAACAAGGACACGGAAGATGAGGATGATGATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | GCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAAGGCTCCTGGGATCTTCTTCCAGAAAGGCCAGCTaGCCCGAGCCGCTGAACGTG | + |
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Preference number: 5 (lower is better) Translates to: ANRCVCSWSNISRLLGSSSRKAS*PEPLNV Trigger: CACGTTCAGCGGCTCGGGCAAGCTGGCCTTTCTGGA...AGAAGATCCCAGGAGCCTTGAGATGTTAGACCAAGAACAAACACATCTATTTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | TTGGGTGTGAGATATCATTGCAGCAACACAGGGGAGACAGACATTGTCTATGGCCGCAGGTTGTTGTCGTaGAGTTCCAGCACCTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: LGVRYHCSNTGETDIVYGRRLLS*SSSTCK Trigger: CTTGCAGGTGCTGGAACTCAACGACAACAACCTGCG...GCCATAGACAATGTCTGTCTCCCCTGTGTTGCTGCAATGATATCTCACACCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS-3UTR CAA 90 bp | GACAGACATTGTCTATGGCAAATAGATGTGTTTGTTCTTGGTCTAACATCTCAATTGAGGCTGCGCAGGTaGTTGTCGTTGAGTTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: DRHCLWQIDVFVLGLTSQLRLRR*LSLSSS Trigger: GCTGGAACTCAACGACAACAACCTGCGCAGCCTCAA...TTGAGATGTTAGACCAAGAACAAACACATCTATTTGCCATAGACAATGTCTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 72 bp | GCCCGCGATCGCGACAGTCCACGGTATGGGGGTCGGTaGAAGCACAGCCCGCGGGGCACGCGCGTCCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: ARDRDSPRYGGR*KHSPRGTRVPA Trigger: GGCCGGGACGCGCGTGCCCCGCGGGCTGTGCTTGCACCGACCCCCATACCGTGGACTGTCGCGATCGCGGGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 72 bp | ACGCTGGGCAGCCCGCGATCGCGACAGTCCACGGTATaGGGGTCGGTGCAAGCACAGCCCGCGGGGCACGCG | + |
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Preference number: 6 (lower is better) Translates to: TLGSPRSRQSTV*GSVQAQPAGHA Trigger: CGCGTGCCCCGCGGGCTGTGCTTGCACCGACCCCCATACCGTGGACTGTCGCGATCGCGGGCTGCCCAGCGT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 72 bp | GCTTGCGCACGTCCAGGGGGAAGGGATCGGGCACGCTaGGCAGCCCGCGATCGCGACAGTCCACGGTATGGG | + |
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Preference number: 6 (lower is better) Translates to: ACARPGGRDRAR*AARDRDSPRYG Trigger: CCCATACCGTGGACTGTCGCGATCGCGGGCTGCCCAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 90 bp | AAGTCCTCGGGGATCTGCTGGATGCGGTTGCCGGCCACTAGCAGCTaGCGCACGTCCAGGGGGAAGGGATCGGGCACGCTGGGCAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: KSSGICWMRLPATSS*RTSRGKGSGTLGSP Trigger: CGGGCTGCCCAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 72 bp | CAGCCAGGGGTTCCCGTCCAGGCGCACAGTGCGCAGTaGCGGCAGCGCATCCAAAGCCGCCACGTTGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: QPGVPVQAHSAQ*RQRIQSRHVEA Trigger: AGCCTCAACGTGGCGGCTTTGGATGCGCTGCCGGCACTGCGCACTGTGCGCCTGGACGGGAACCCCTGGCTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS TCA 72 bp | TCCCCGCCGAGCGGAAGGCGCCGGCCCCCAGCTGGGTaGGGTTGTTGTAGCTCAGGTCCAGAAAGGCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SPPSGRRRPPAG*GCCSSGPERPA Trigger: AGCTGGCCTTTCTGGACCTGAGCTACAACAACCTCACCCAGCTGGGGGCCGGCGCCTTCCGCTCGGCGGGGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 72 bp | GGATCTGCTGGATGCGGTTGCCGGCCACTAGCAGCTTaGGCACGTCCAGGGGGAAGGGATCGGGCACGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GSAGCGCRPLAA*ARPGGRDRARW Trigger: CCAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 72 bp | AGTCACACAGCCAGGGGTTCCCGTCCAGGCGCACAGTaGGCAGTGCCGGCAGCGCATCCAAAGCCGCCACGT | + |
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Preference number: 6 (lower is better) Translates to: SHTARGSRPGAQ*AVPAAHPKPPR Trigger: ACGTGGCGGCTTTGGATGCGCTGCCGGCACTGCGCACTGTGCGCCTGGACGGGAACCCCTGGCTGTGTGACT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 72 bp | GGGATCTGCTGGATGCGGTTGCCGGCCACTAGCAGCTaGCGCACGTCCAGGGGGAAGGGATCGGGCACGCTG | + |
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Preference number: 6 (lower is better) Translates to: GICWMRLPATSS*RTSRGKGSGTL Trigger: CAGCGTGCCCGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS TCA 72 bp | AGCTCAGGTCCAGAAAGGCCAGCTTGCCCGAGCCGCTaGACGTGCCCTCCTCCAGCGAGCGCAGCGAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: SSGPERPACPSR*TCPPPASAASC Trigger: ACAACTCGCTGCGCTCGCTGGAGGAGGGCACGTTCAGCGGCTCGGGCAAGCTGGCCTTTCTGGACCTGAGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 72 bp | GTGCGCAGTGCCGGCAGCGCATCCAAAGCCGCCACGTaGAGGCTGCGCAGGTTGTTGTCGTTGAGTTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: VRSAGSASKAAT*RLRRLLSLSSS Trigger: GCTGGAACTCAACGACAACAACCTGCGCAGCCTCAACGTGGCGGCTTTGGATGCGCTGCCGGCACTGCGCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 90 bp | AGGCGCACAGTGCGCAGTGCCGGCAGCGCATCCAAAGCCGCCACGTaGAGGCTGCGCAGGTTGTTGTCGTTGAGTTCCAGCACCTGCAAG | + |
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Preference number: 6 (lower is better) Translates to: RRTVRSAGSASKAAT*RLRRLLSLSSSTCK Trigger: CTTGCAGGTGCTGGAACTCAACGACAACAACCTGCGCAGCCTCAACGTGGCGGCTTTGGATGCGCTGCCGGCACTGCGCACTGTGCGCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 90 bp | GCCGGCAGCGCATCCAAAGCCGCCACGTTGAGGCTGCGCAGGTTGTaGTCGTTGAGTTCCAGCACCTGCAAGGACTCCAGGCTCTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: AGSASKAATLRLRRL*SLSSSTCKDSRLSK Trigger: CTTCGAGAGCCTGGAGTCCTTGCAGGTGCTGGAACTCAACGACAACAACCTGCGCAGCCTCAACGTGGCGGCTTTGGATGCGCTGCCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 72 bp | AAGATGAAGAAGTCCTCGGGGATCTGCTGGATGCGGTaGCCGGCCACTAGCAGCTTGCGCACGTCCAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: KMKKSSGICWMR*PATSSLRTSRG Trigger: CCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 90 bp | TCTCCATGGAAGATGAAGAAGTCCTCGGGGATCTGCTGGATGCGGTaGCCGGCCACTAGCAGCTTGCGCACGTCCAGGGGGAAGGGATCG | + |
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Preference number: 6 (lower is better) Translates to: SPWKMKKSSGICWMR*PATSSLRTSRGKGS Trigger: CGATCCCTTCCCCCTGGACGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS TCA 72 bp | CTCCCTCAGGGCCACCCTCCGGTCCTCCATGGGCAGTaGACACTGGATGGCATCGAGGCCTTTGGGCAATTT | + |
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Preference number: 6 (lower is better) Translates to: LPQGHPPVLHGQ*TLDGIEAFGQF Trigger: AAATTGCCCAAAGGCCTCGATGCCATCCAGTGTTCACTGCCCATGGAGGACCGGAGGGTGGCCCTGAGGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 72 bp | TCTCCATGGAAGATGAAGAAGTCCTCGGGGATCTGCTaGATGCGGTTGCCGGCCACTAGCAGCTTGCGCACG | + |
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Preference number: 6 (lower is better) Translates to: SPWKMKKSSGIC*MRLPATSSLRT Trigger: CGTGCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 72 bp | AGATCTCCATGGAAGATGAAGAAGTCCTCGGGGATCTaGTGGATGCGGTTGCCGGCCACTAGCAGCTTGCGC | + |
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Preference number: 6 (lower is better) Translates to: RSPWKMKKSSGI*WMRLPATSSLR Trigger: GCGCAAGCTGCTAGTGGCCGGCAACCGCATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS GCA 72 bp | AGGCTGCGCAGGTTGTTGTCGTTGAGTTCCAGCACCTaGAAGGACTCCAGGCTCTCGAAGGCAGCCTCATGT | + |
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Preference number: 6 (lower is better) Translates to: RLRRLLSLSSST*KDSRLSKAASC Trigger: ACATGAGGCTGCCTTCGAGAGCCTGGAGTCCTTGCAGGTGCTGGAACTCAACGACAACAACCTGCGCAGCCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 72 bp | CCGCTGAACGTGCCCTCCTCCAGCGAGCGCAGCGAGTaGTTCCTGAAATCCAGATACACCAGATCTCCATGG | + |
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Preference number: 6 (lower is better) Translates to: PLNVPSSSERSE*FLKSRYTRSPW Trigger: CCATGGAGATCTGGTGTATCTGGATTTCAGGAACAACTCGCTGCGCTCGCTGGAGGAGGGCACGTTCAGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CAA 90 bp | TTGCCCGAGCCGCTGAACGTGCCCTCCTCCAGCGAGCGCAGCGAGTaGTTCCTGAAATCCAGATACACCAGATCTCCATGGAAGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: LPEPLNVPSSSERSE*FLKSRYTRSPWKMK Trigger: CTTCATCTTCCATGGAGATCTGGTGTATCTGGATTTCAGGAACAACTCGCTGCGCTCGCTGGAGGAGGGCACGTTCAGCGGCTCGGGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 72 bp | CCACCCTCCGGTCCTCCATGGGCAGTGAACACTGGATaGCATCGAGGCCTTTGGGCAATTTGGATGTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: PPSGPPWAVNTG*HRGLWAIWMCS Trigger: AGAACACATCCAAATTGCCCAAAGGCCTCGATGCCATCCAGTGTTCACTGCCCATGGAGGACCGGAGGGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 72 bp | TCCTCATCTTCCGTGTCCTTGTTAGGGGCGCACCTCTaGAAACACTGCACCACAGTGGCCAGGAAGAAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SSSSVSLLGAHL*KHCTTVARKKL Trigger: CAGCTTCTTCCTGGCCACTGTGGTGCAGTGTTTCCAGAGGTGCGCCCCTAACAAGGACACGGAAGATGAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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| CDS CCA 72 bp | GAGTTGTTCCTGAAATCCAGATACACCAGATCTCCATaGAAGATGAAGAAGTCCTCGGGGATCTGCTGGATG | + |
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Preference number: 6 (lower is better) Translates to: ELFLKSRYTRSP*KMKKSSGICWM Trigger: CATCCAGCAGATCCCCGAGGACTTCTTCATCTTCCATGGAGATCTGGTGTATCTGGATTTCAGGAACAACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052458.3 |
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