Pregenerated sensors for LRRC34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027702Ensembl transcript IDs: ENSMUST00000029252.8
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTaGGTTAAGATATCTGTAGTGACTTTACTTTTCTTTGGTTTTTGT | + |
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Preference number: 2 (lower is better) Translates to: IHCKLASCKANLPYH*VKISVVTLLFFGFC Trigger: ACAAAAACCAAAGAAAAGTAAAGTCACTACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR TCA 90 bp | AGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATCTGTAGTGACTTTACAGTTTCTCCAGGCTTaGGTTCATCTGCAGCATTGC | + |
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Preference number: 4 (lower is better) Translates to: SCKANLPYHLVKISVVTLQFLQA*VHLQHC Trigger: GCAATGCTGCAGATGAACTCAAGCCTGGAGAAACTG...TAAAGTCACTACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR TCA 90 bp | ACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATAAGTTAGAGTTTCACTaGGGTACTTTGCGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: TVNLPAAKQICHIIWLRYKLEFH*GTLRLQ Trigger: CTGCAGGCGCAAAGTACCTCAGTGAAACTCTAACTT...ATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR GCA 90 bp | AAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATCTGTAGTTCATCTGCAGCATTaGAGCAAAAAGCATGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: KLASCKANLPYHLVKISVVHLQH*SKKHAS Trigger: GGAGGCATGCTTTTTGCTGCAATGCTGCAGATGAAC...TACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR GCA 90 bp | AAAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAGGCTTGAGTTCATCTaGAGCATTGCAGCAAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: KIHCKLASCKANLPYHLVRLEFI*SIAAKS Trigger: GCTTTTTGCTGCAATGCTGCAGATGAACTCAAGCCT...AACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR GCA 90 bp | AGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATCTGTAGTGACTTTAAATGCGATCACACATTaGAGTCCCAGGTCACAGTCG | + |
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Preference number: 4 (lower is better) Translates to: SCKANLPYHLVKISVVTLNAITH*SPRSQS Trigger: CGACTGTGACCTGGGACTGCAATGTGTGATCGCATT...TAAAGTCACTACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CCA 90 bp | ACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATTTGGTTTTCATTGACTaGGAAAGTGCAACAAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: TVNLPAAKQICHIIWLRYLVFID*ESATSP Trigger: GGGGCTTGTTGCACTTTCCCAGTCAATGAAAACCAA...ATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR TCA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCGCCGTTGGAGACTTCTaGAAGGTAAATATGTTCGTC | + |
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Preference number: 4 (lower is better) Translates to: VACFRVDILVSMLRISFFAVGDF*KVNMFV Trigger: GACGAACATATTTACCTTTCAGAAGTCTCCAACGGC...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CCA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCAACATGTGGCCAATGTaGACAGTAGACTCTTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: VACFRVDILVSMLRISFFNMWPM*TVDSSC Trigger: ACAGGAAGAGTCTACTGTCCACATTGGCCACATGTT...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CCA 90 bp | AAAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTTTTTCTTTCAACATGTaGCCAATGTGGACAGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: KIHCKLASCKANLPYHLVFSFNM*PMWTVD Trigger: GTCTACTGTCCACATTGGCCACATGTTGAAAGAAAA...AACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTTT 39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR GCA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCTTGCAGCAAAAAGCATaGCTCCTGTGTTCTCAATCT | + |
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Preference number: 4 (lower is better) Translates to: VACFRVDILVSMLRISFFLQQKA*LLCSQS Trigger: AGATTGAGAACACAGGAGGCATGCTTTTTGCTGCAA...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR GCA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCGCTGACTACAGACAATaGTTTAAGACTCCTGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: VACFRVDILVSMLRISFFADYRQ*FKTPVV Trigger: CACAACAGGAGTCTTAAAGCATTGTCTGTAGTCAGC...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CCA 90 bp | AAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATCTGTACCCAAATGTAGATATTaGACAGTACGAGGTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: KLASCKANLPYHLVKISVPKCRY*TVRGWF Trigger: AAACCAACCTCGTACTGTCCAATATCTACATTTGGG...TACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR TCA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCAGCTCAACAAGGACATaGTTTTCTTTCAACATGTGG | + |
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Preference number: 4 (lower is better) Translates to: VACFRVDILVSMLRISFFSSTRT*FSFNMW Trigger: CCACATGTTGAAAGAAAATCATGTCCTTGTTGAGCT...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR GCA 90 bp | AAAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTTCAAATACAGTGCATTaGATAACTGCTGTAAACCAT | + |
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Preference number: 4 (lower is better) Translates to: KIHCKLASCKANLPYHLVSNTVH*ITAVNH Trigger: ATGGTTTACAGCAGTTATGCAATGCACTGTATTTGA...AACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR TCA 90 bp | AGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATCTGTAGTGACTTTAACTCTTTATCAAATCTaGATATGCCACACAGGTATC | + |
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Preference number: 4 (lower is better) Translates to: SCKANLPYHLVKISVVTLTLYQI*ICHTGI Trigger: GATACCTGTGTGGCATATTCAGATTTGATAAAGAGT...TAAAGTCACTACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | AAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGTTCATCTGCAGCATaGCAGCAAAAAGCATGCCTC | + |
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Preference number: 5 (lower is better) Translates to: KSTVNLPAAKQICHIIWLSSSAA*QQKACL Trigger: GAGGCATGCTTTTTGCTGCAATGCTGCAGATGAACT...TAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | AAAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTCCGGAGTCTAAGCGATaGTTACCAGCAATATTTACG | + |
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Preference number: 5 (lower is better) Translates to: KIHCKLASCKANLPYHLVPESKR*LPAIFT Trigger: CGTAAATATTGCTGGTAACAATCGCTTAGACTCCGG...AACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCCCAGTTTCTCCAGGCTaGAGTTCATCTGCAGCATTG | + |
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Preference number: 5 (lower is better) Translates to: VACFRVDILVSMLRISFFPVSPG*SSSAAL Trigger: CAATGCTGCAGATGAACTCAAGCCTGGAGAAACTGG...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | AAAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTCCCTCTCCTTCTATCTaGTTGCTGACTACAGACAAT | + |
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Preference number: 5 (lower is better) Translates to: KIHCKLASCKANLPYHLVPSPSI*LLTTDN Trigger: ATTGTCTGTAGTCAGCAACAAGATAGAAGGAGAGGG...AACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | AAAATCCACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTCGAGGTTGGTTTTCATaGACTGGGAAAGTGCAACAA | + |
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Preference number: 5 (lower is better) Translates to: KIHCKLASCKANLPYHLVRGWFS*TGKVQQ Trigger: TTGTTGCACTTTCCCAGTCAATGAAAACCAACCTCG...AACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGTGGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | AAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATCTGTATCTCCTTCTATCTTGTaGCTGACTACAGACAATGCT | + |
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Preference number: 5 (lower is better) Translates to: KLASCKANLPYHLVKISVSPSIL*LTTDNA Trigger: AGCATTGTCTGTAGTCAGCAACAAGATAGAAGGAGA...TACAGATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | GTGGCTTGTTTCAGGGTTGATATTTTAGTCTCTATGTTAAGAATCAGCTTTTTCTTGGACAGTACGAGGTaGGTTTTCATTGACTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: VACFRVDILVSMLRISFFLDSTR*VFIDWE Trigger: TTCCCAGTCAATGAAAACCAACCTCGTACTGTCCAA...GAAAAAGCTGATTCTTAACATAGAGACTAAAATATCAACCCTGAAACAAGCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | ACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATTGGTTCCTTAAAGTTTaGGAAAGAAGCCAAAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: TVNLPAAKQICHIIWLRYWFLKV*ERSQKS Trigger: AGACTTTTGGCTTCTTTCCAAAACTTTAAGGAACCA...ATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS-3UTR CAA 90 bp | ACTGTAAACTTGCCAGCTGCAAAGCAAATCTGCCATATCATTTGGTTAAGATATTTCAAATACAGTGCATaGCATAACTGCTGTAAACCA | + |
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Preference number: 5 (lower is better) Translates to: TVNLPAAKQICHIIWLRYFKYSA*HNCCKP Trigger: TGGTTTACAGCAGTTATGCAATGCACTGTATTTGAA...ATATCTTAACCAAATGATATGGCAGATTTGCTTTGCAGCTGGCAAGTTTACAGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS TCA 72 bp | TTCGCCCACAGGAACAAGAGCAAAGCCTGCGGAAGATaGCGGCATGTAAGTTTCTCCATAAGTCGGTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: FAHRNKSKACGR*RHVSFSISRCP Trigger: TGGGCACCGACTTATGGAGAAACTTACATGCCGTCATCTTCCGCAGGCTTTGCTCTTGTTCCTGTGGGCGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS CAA 72 bp | GATCCAGTTTCTCCAGGCTTGAGTTCATCTGCAGCATaGCAGCAAAAAGCATGCCTCCTGTGTTCTCAATCT | + |
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Preference number: 6 (lower is better) Translates to: DPVSPGLSSSAA*QQKACLLCSQS Trigger: AGATTGAGAACACAGGAGGCATGCTTTTTGCTGCAATGCTGCAGATGAACTCAAGCCTGGAGAAACTGGATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS CAA 90 bp | TACCTCACATCCACACCACTGATACATGGCTGGTTCCTTAAAGTTTaGGAAAGAAGCCAAAAGTCTTCCCCTGTTATTCTTTGTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: YLTSTPLIHGWFLKV*ERSQKSSPVILCPE Trigger: CTCCGGACAAAGAATAACAGGGGAAGACTTTTGGCTTCTTTCCAAAACTTTAAGGAACCAGCCATGTATCAGTGGTGTGGATGTGAGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS CAA 72 bp | AAATGTAGATATTGGACAGTACGAGGTTGGTTTTCATaGACTGGGAAAGTGCAACAAGCCCCTCTCCTTCTA | + |
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Preference number: 6 (lower is better) Translates to: KCRYWTVRGWFS*TGKVQQAPLLL Trigger: TAGAAGGAGAGGGGCTTGTTGCACTTTCCCAGTCAATGAAAACCAACCTCGTACTGTCCAATATCTACATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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| CDS CAA 72 bp | TCTTCCCCTGTTATTCTTTGTCCGGAGTCTAAGCGATaGTTACCAGCAATATTTACGGTAAATTTTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SSPVILCPESKR*LPAIFTVNFSL Trigger: CAAAGAAAAATTTACCGTAAATATTGCTGGTAACAATCGCTTAGACTCCGGACAAAGAATAACAGGGGAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029252.8 |
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