RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRRC32 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090958

Ensembl transcript IDs: ENSMUST00000165205.2, ENSMUST00000205937.2, ENSMUST00000205956.2

Found 275 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTaGCCACGCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAG +
Preference number: 1 (lower is better)
Translates to: FELHSWPTDAAWEGT*PRGSVQDTKSLVTE
Trigger: CTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 90 bp TGGATCCTGGTTAGGGCAGGGCCACTTCCTGTCCACTTGACAGCCTaGAGGTACCGCACTGGCAAAGCTTTGGCCCCAGAGATGGGAGGA +
Preference number: 1 (lower is better)
Translates to: WILVRAGPLPVHLTA*RYRTGKALAPEMGG
Trigger: TCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGCGGTACCTGCAGGCTGTCAAGTGGACAGGAAGTGGCCCTGCCCTAACCAGGATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 90 bp GATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTCCTCCCTaGAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: DAAGSVTGSRTPLPP*SPQAWRMSGDSVCV
Trigger: CACACACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR TCA 90 bp AGTGTGCTTGGATCCTGGTTAGGGCAGGGCCACTTCCTGTCCACTTaGCAGCCTGCAGGTACCGCACTGGCAAAGCTTTGGCCCCAGAGA +
Preference number: 1 (lower is better)
Translates to: SVLGSWLGQGHFLST*QPAGTALAKLWPQR
Trigger: TCTCTGGGGCCAAAGCTTTGCCAGTGCGGTACCTGCAGGCTGTCAAGTGGACAGGAAGTGGCCCTGCCCTAACCAGGATCCAAGCACACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 90 bp TGGGGAACAGGCAGCACCAGGGTCAGTGTGTGTGTGATACAAGAGTaGACTGGAGAGAAGGCCTGTCCAAAGCAGGACACAGGACGGCCC +
Preference number: 1 (lower is better)
Translates to: WGTGSTRVSVCVIQE*TGEKACPKQDTGRP
Trigger: GGGCCGTCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACACACACTGACCCTGGTGCTGCCTGTTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 90 bp AACAGGCAGCACCAGGGTCAGTGTGTGTGTGATACAAGAGTGCACTaGAGAGAAGGCCTGTCCAAAGCAGGACACAGGACGGCCCAGGCC +
Preference number: 1 (lower is better)
Translates to: NRQHQGQCVCDTRVH*REGLSKAGHRTAQA
Trigger: GGCCTGGGCCGTCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACACACACTGACCCTGGTGCTGCCTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR TCA 90 bp GGTCCAGGACTCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATaGGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: GPGLPFLPAAHKPGE*VETVCVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGAGTCCTGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 90 bp GGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTaGTCTAAGTCAGGGTGGGTTCTCCATGTCCAGCCTACTGCTTCC +
Preference number: 1 (lower is better)
Translates to: GVERTQTNPLTGWLS*SKSGWVLHVQPTAS
Trigger: GGAAGCAGTAGGCTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 90 bp AGACGGGTGTGGCCTGAAACAGATACTCAGCGTCGAGCTGTCGGTTaGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCACAGC +
Preference number: 1 (lower is better)
Translates to: RRVWPETDTQRRAVG*HPLCSKLPHFELHS
Trigger: GCTGTGCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGACAGCTCGACGCTGAGTATCTGTTTCAGGCCACACCCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 90 bp ACAGAGCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTaGCTCTCCTGCTCTAAGTCAGGGTGGGTTCTCCATGTCCAGCCT +
Preference number: 1 (lower is better)
Translates to: TELGVERTQTNPLTG*LSCSKSGWVLHVQP
Trigger: AGGCTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGCTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 90 bp GTGACTGGGTCCAGGACTCCCCTTCCTCCCTGCAGCCCACAAGCCTaGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: VTGSRTPLPPCSPQA*RMSGDSVCVCVCVC
Trigger: ACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGAGTCCTGGACCCAGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 90 bp CAGGACTCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTaGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC +
Preference number: 1 (lower is better)
Translates to: QDSPSSLQPTSLENE*RQCVCVCVCVCVCV
Trigger: GACACACACACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGAGTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 90 bp TCTTTCACCGGTTTTAAGATGAGGAGTGGATACAGAGAAAGGCAGTaGGCACATGGCCGCAGACAGGTGGGAAAGAGCCGCAGCCGCTGT +
Preference number: 1 (lower is better)
Translates to: SFTGFKMRSGYRERQ*AHGRRQVGKSRSRC
Trigger: ACAGCGGCTGCGGCTCTTTCCCACCTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCCACTCCTCATCTTAAAACCGGTGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR CCA 90 bp AGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGGTaGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTGCT +
Preference number: 1 (lower is better)
Translates to: REAESHYQQMRQSSG*KGLRQILSRAGSPA
Trigger: AGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATaGCTGGTGAGGACTGGCATGGTAGCTGGCCTTGTCTCGTGCTGT +
Preference number: 1 (lower is better)
Translates to: CVCVCVCVCVPIIFP*LVRTGMVAGLVSCC
Trigger: ACAGCACGAGACAAGGCCAGCTACCATGCCAGTCCTCACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 90 bp ACAAGTTCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATaGGACAGAGCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCAC +
Preference number: 1 (lower is better)
Translates to: TSSSFPERLKVIISR*DRARGGKDSDKSSH
Trigger: GTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGAACTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 90 bp GTCCCAGGGCCCGGTAGAGGCCAGTCCTGGGAGGTGAGAGCAGCATaGATTAGTGTTTTCAGAGTTCAGGCCCAGGGGCCACCACGCCTT +
Preference number: 2 (lower is better)
Translates to: VPGPGRGQSWEVRAA*ISVFRVQAQGPPRL
Trigger: AAGGCGTGGTGGCCCCTGGGCCTGAACTCTGAAAACACTAATCAATGCTGCTCTCACCTCCCAGGACTGGCCTCTACCGGGCCCTGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp GCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTGCTCTTCGAGCTGCACAGCTaGCCCACAGATGCAGCCTGG +
Preference number: 2 (lower is better)
Translates to: ARGGKDSDKSSHGLALLLFELHS*PTDAAW
Trigger: CCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAA...GAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp TCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGCACGGGTACAGCCGCTaGCATCCAGCTCAGGGCCTT +
Preference number: 2 (lower is better)
Translates to: SPSSLQPTSLENEWRQCVHGYSR*HPAQGL
Trigger: AAGGCCCTGAGCTGGATGCCAGCGGCTGTACCCGTG...CACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp GTGATACAAGAGTGCACTGGAGAGAAGGCCTGTCCAAAGCAGGACACAGGACGGCCCACAGATGCAGCCTaGGAAGGAACCTGCCCACGC +
Preference number: 2 (lower is better)
Translates to: VIQECTGEKACPKQDTGRPTDAA*EGTCPR
Trigger: GCGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGG...CCGTCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTGCTCAAAAGTCAGGGTaGGGCTGGGATAGAAGGAGG +
Preference number: 2 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLAQKSG*GWDRRR
Trigger: CCTCCTTCTATCCCAGCCCCACCCTGACTTTTGAGC...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAGGACCCCAACTTCTCTaGCCCTCTGGCTTCCCGAGC +
Preference number: 2 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLGPQLL*PSGFPS
Trigger: GCTCGGGAAGCCAGAGGGGCAGAGAAGTTGGGGTCC...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp GCGTTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCAGGACCCCAACTTCTCTaGCCCTCTGGCTTCCCGAGC +
Preference number: 2 (lower is better)
Translates to: AFSSSCTLRKLWLTVGRAGPQLL*PSGFPS
Trigger: GCTCGGGAAGCCAGAGGGGCAGAGAAGTTGGGGTCC...TGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAACGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp TTTAAGATGAGGAGTGGATACAGAGAAAGGCAGTGGGCACATGGCCGCAGACAGGCCCACGCGGCAGTGTaGAGGACACCAAGTCCCTGG +
Preference number: 2 (lower is better)
Translates to: FKMRSGYRERQWAHGRRQAHAAV*RTPSPW
Trigger: CCAGGGACTTGGTGTCCTGCACACTGCCGCGTGGGC...CTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCCACTCCTCATCTTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTGTCATTATCAGCAGATaGGACAGAGCTCGGGGTGGA +
Preference number: 2 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLVIISR*DRARGG
Trigger: TCCACCCCGAGCTCTGTCGCATCTGCTGATAATGAC...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp GCGTTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCACCCACAGATGCAGCCTaGGAAGGAACCTGCCCACGC +
Preference number: 2 (lower is better)
Translates to: AFSSSCTLRKLWLTVGRAPTDAA*EGTCPR
Trigger: GCGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGG...TGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAACGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTAATCCTCTCACGGGCTaGCTCTCCTGCTCTAAGTCA +
Preference number: 2 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLNPLTG*LSCSKS
Trigger: TGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGGATT...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp TCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGCAGCTCTCTGAGCCATaGGGCTCTCAAAGGAGAATG +
Preference number: 2 (lower is better)
Translates to: SPSSLQPTSLENEWRQCVQLSEP*GSQRRM
Trigger: CATTCTCCTTTGAGAGCCTCATGGCTCAGAGAGCTG...CACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CCTCTCACGGGCTGGCTCTCCTGCTCTAAGTCAGGGTGGGTTCTCCATGTCCAGTATGTGGTCACTGTGTaGTTCAGTGACGGCCTCTCT +
Preference number: 2 (lower is better)
Translates to: PLTGWLSCSKSGWVLHVQYVVTV*FSDGLS
Trigger: AGAGAGGCCGTCACTGAACCACACAGTGACCACATA...CTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp AGAGGCCAGTCCTGGGAGGTGAGAGCAGCATTGATTAGTGTTTTCAGAGTTCAGTACGGAAGCTCTGGCTaGCTGTGGGCCGAGCACAGG +
Preference number: 2 (lower is better)
Translates to: RGQSWEVRAALISVFRVQYGSSG*LWAEHR
Trigger: CCTGTGCTCGGCCCACAGTCAGCCAGAGCTTCCGTA...CTGAACTCTGAAAACACTAATCAATGCTGCTCTCACCTCCCAGGACTGGCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp ATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGCCTCTGCAGCTGCTAAGCGCCCACGCGGCAGTGTaGAGGACACCAAGTCCCTGG +
Preference number: 2 (lower is better)
Translates to: ITQKPLRVGLTLPLQLLSAHAAV*RTPSPW
Trigger: CCAGGGACTTGGTGTCCTGCACACTGCCGCGTGGGC...GCTTAGCAGCTGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp TCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGCACCTCAAGCCTATGTaGTCACTGTGTGGTTCAGTG +
Preference number: 2 (lower is better)
Translates to: SPSSLQPTSLENEWRQCVHLKPM*SLCGSV
Trigger: CACTGAACCACACAGTGACCACATAGGCTTGAGGTG...CACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp GCGTTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCAGCACTGGCAAAGCTTTaGCCCCAGAGATGGGAGGAC +
Preference number: 2 (lower is better)
Translates to: AFSSSCTLRKLWLTVGRAALAKL*PQRWED
Trigger: GTCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGC...TGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAACGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 90 bp ACCGCACTGGCAAAGCTTTGGCCCCAGAGATGGGAGGACATGGACTaGATTCATTTTGGCTTCGTCAGCTCTCTGAGCCATGAGGCTCTC +
Preference number: 2 (lower is better)
Translates to: TALAKLWPQRWEDMD*IHFGFVSSLSHEAL
Trigger: GAGAGCCTCATGGCTCAGAGAGCTGACGAAGCCAAAATGAATCAAGTCCATGTCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp GTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACCTTCTCTGGGCCTCAGTCGCGTGGAAGCCTAGGTaGTCACACTTTAAGCTGGTG +
Preference number: 2 (lower is better)
Translates to: VWICLLVLGAFNLLWASVAWKPR*SHFKLV
Trigger: CACCAGCTTAAAGTGTGATCACCTAGGCTTCCACGC...GACTGAGGCCCAGAGAAGGTTAAAGGCTCCGAGGACCAATAGGCAGATCCAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp GTGAGAGCAGCATTGATTAGTGTTTTCAGAGTTCAGGCCCAGGGGCCACCACGCGGGTCAGTGTGTGTGTaGTACAAGAGTGCACTGGAG +
Preference number: 2 (lower is better)
Translates to: VRAALISVFRVQAQGPPRGSVCV*YKSALE
Trigger: CTCCAGTGCACTCTTGTATCACACACACACTGACCC...GCGTGGTGGCCCCTGGGCCTGAACTCTGAAAACACTAATCAATGCTGCTCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp ACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGCTGGCCCACAGATaGAGCCTGGGAAGGAACCTG +
Preference number: 2 (lower is better)
Translates to: TSLENEWRQCVCVCVCVCQLAHR*SLGRNL
Trigger: CAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTG...ACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp GTGAGAGCAGCATTGATTAGTGTTTTCAGAGTTCAGGCCCAGGGGCCACCACGCGTCATTATCAGCAGATaGGACAGAGCTCGGGGTGGA +
Preference number: 2 (lower is better)
Translates to: VRAALISVFRVQAQGPPRVIISR*DRARGG
Trigger: TCCACCCCGAGCTCTGTCGCATCTGCTGATAATGAC...GCGTGGTGGCCCCTGGGCCTGAACTCTGAAAACACTAATCAATGCTGCTCTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTTTTCTTCCATTGACTTaGGTGATTCTGAGCAAGGCC +
Preference number: 2 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLFLPLT*VILSKA
Trigger: GGCCTTGCTCAGAATCACGCAAGTCAATGGAAGAAA...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp GGATACAGAGAAAGGCAGTGGGCACATGGCCGCAGACAGGTGGGAAAGAGCCGCCCTATTATTTTTCCATaGCTGGTGAGGACTGGCATG +
Preference number: 2 (lower is better)
Translates to: GYRERQWAHGRRQVGKSRPIIFP*LVRTGM
Trigger: CATGCCAGTCCTCACCAGGCATGGAAAAATAATAGG...GCGGCTCTTTCCCACCTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp TCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGGATACAAGAGTGCACTaGAGAGAAGGCCTGTCCAAA +
Preference number: 2 (lower is better)
Translates to: SPSSLQPTSLENEWRQCVDTRVH*REGLSK
Trigger: TTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATC...CACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp AGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACCTTCAAGTCAGGGTGGGGCTaGGATAGAAGGAGGCCTGAG +
Preference number: 2 (lower is better)
Translates to: REGSRSGSAYWSSEPLTFKSGWG*DRRRPE
Trigger: CTCAGGCCTCCTTCTATCCCAGCCCCACCCTGACTT...GAAGGTTAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 90 bp CTTCCTGTCCACTTGACAGCCTGCAGGTACCGCACTGGCAAAGCTTaGGCCCCAGAGATGGGAGGACATGGACTTGATTCATTTTGGCTT +
Preference number: 2 (lower is better)
Translates to: LPVHLTACRYRTGKA*APEMGGHGLDSFWL
Trigger: AAGCCAAAATGAATCAAGTCCATGTCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGCGGTACCTGCAGGCTGTCAAGTGGACAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACTGGCAAAGCTTTaGCCCCAGAGATGGGAGGAC +
Preference number: 2 (lower is better)
Translates to: LENEWRQCVCVCVCVCVCALAKL*PQRWED
Trigger: GTCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGC...ACACACACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp TGTGTGATACAAGAGTGCACTGGAGAGAAGGCCTGTCCAAAGCAGGACACAGGAGCGTGGAAGCCTAGGTaGTCACACTTTAAGCTGGTG +
Preference number: 2 (lower is better)
Translates to: CVIQECTGEKACPKQDTGAWKPR*SHFKLV
Trigger: CACCAGCTTAAAGTGTGATCACCTAGGCTTCCACGC...TCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAAGGACACCAAGTCCCTaGTCACTGAGTAACCTGAGT +
Preference number: 2 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLRTPSP*SLSNLS
Trigger: ACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCT...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTAGGGCACCTCAAGCCTATGTaGTCACTGTGTGGTTCAGTG +
Preference number: 2 (lower is better)
Translates to: LSEREGVYVASVLGSWLGHLKPM*SLCGSV
Trigger: CACTGAACCACACAGTGACCACATAGGCTTGAGGTG...CCCTAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp TTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGGTGGAAATCCTCTCACGGGCTaGCTCTCCTGCTCTAAGTCA +
Preference number: 2 (lower is better)
Translates to: FPERLKVIISRCDRARGGNPLTG*LSCSKS
Trigger: TGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGGATT...TCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTAGGGCTTTGGCCCCAGAGATaGGAGGACATGGACTTGATT +
Preference number: 2 (lower is better)
Translates to: LSEREGVYVASVLGSWLGLWPQR*EDMDLI
Trigger: AATCAAGTCCATGTCCTCCCATCTCTGGGGCCAAAG...CCCTAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp AGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACCTTCTATGTGGTCACTGTGTaGTTCAGTGACGGCCTCTCT +
Preference number: 2 (lower is better)
Translates to: REGSRSGSAYWSSEPLTFYVVTV*FSDGLS
Trigger: AGAGAGGCCGTCACTGAACCACACAGTGACCACATA...GAAGGTTAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATGCCTGGTAAGTCAGGGTGGGGCTaGGATAGAAGGAGGCCTGAG +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVCPYYFSMPGKSGWG*DRRRPE
Trigger: CTCAGGCCTCCTTCTATCCCAGCCCCACCCTGACTT...ACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp AGAGGCCAGTCCTGGGAGGTGAGAGCAGCATTGATTAGTGTTTTCAGAGTTCAGTGCAGCCCACAAGCCTaGAGAATGAGTGGAGACAGT +
Preference number: 2 (lower is better)
Translates to: RGQSWEVRAALISVFRVQCSPQA*RMSGDS
Trigger: ACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCA...CTGAACTCTGAAAACACTAATCAATGCTGCTCTCACCTCCCAGGACTGGCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 90 bp GCGCAACCGCCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTaGCGTGATTCTGAGCAAGGCCTGCACCTAACTTTCCCTATCTGT +
Preference number: 2 (lower is better)
Translates to: AQPPSYFCSQFSSID*RDSEQGLHLTFPIC
Trigger: ACAGATAGGGAAAGTTAGGTGCAGGCCTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGGCGGTTGCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp GTGATACAAGAGTGCACTGGAGAGAAGGCCTGTCCAAAGCAGGACACAGGACGGCATTTCCAGAGAGGCTaGAAGTCATTATCAGCAGAT +
Preference number: 2 (lower is better)
Translates to: VIQECTGEKACPKQDTGRHFQRG*KSLSAD
Trigger: ATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATG...CCGTCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp ATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGCCTCTGCAGCTGCTAAGCCGACAGAGCTCGGGGTaGAAAGGACTCAGACAAATC +
Preference number: 2 (lower is better)
Translates to: ITQKPLRVGLTLPLQLLSRQSSG*KGLRQI
Trigger: GATTTGTCTGAGTCCTTTCCACCCCGAGCTCTGTCG...GCTTAGCAGCTGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp ATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGCCTCTGCAGCTGCTAAGCTCTGGGGAGAGGTTCTaGCTCTCTCTTCAGGTCACA +
Preference number: 2 (lower is better)
Translates to: ITQKPLRVGLTLPLQLLSSGERF*LSLQVT
Trigger: TGTGACCTGAAGAGAGAGCCAGAACCTCTCCCCAGA...GCTTAGCAGCTGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp TTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCACAGGATACAAGAGTGCACTaGAGAGAAGGCCTGTCCAAA +
Preference number: 2 (lower is better)
Translates to: FSSSCTLRKLWLTVGRAQDTRVH*REGLSK
Trigger: TTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATC...CTGTGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATGCCTGGTCGACAGAGCTCGGGGTaGAAAGGACTCAGACAAATC +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVCPYYFSMPGRQSSG*KGLRQI
Trigger: GATTTGTCTGAGTCCTTTCCACCCCGAGCTCTGTCG...ACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp TTTAAGATGAGGAGTGGATACAGAGAAAGGCAGTGGGCACATGGCCGCAGACAGGAATTCATACTCTTCTaGAAAGAAGGGACACTGAGG +
Preference number: 2 (lower is better)
Translates to: FKMRSGYRERQWAHGRRQEFILF*KEGTLR
Trigger: CCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTC...CTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCCACTCCTCATCTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp TTCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGAGGACACCAAGTCCCTaGTCACTGAGTAACCTGAGT +
Preference number: 2 (lower is better)
Translates to: FFISREAESHYQQMRQSSRTPSP*SLSNLS
Trigger: ACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCT...CGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp ACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTCATACTCTTCTaGAAAGAAGGGACACTGAGG +
Preference number: 2 (lower is better)
Translates to: TSLENEWRQCVCVCVCVCEFILF*KEGTLR
Trigger: CCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTC...ACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGAGAAACCTCTGAGAGTTaGCTTGACTTTGCCTCTGCA +
Preference number: 2 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRETSES*LDFASA
Trigger: TGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTC...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CCA 90 bp CCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATTCTGAGCAAGGAAACCTCTGAGAGTTaGCTTGACTTTGCCTCTGCA +
Preference number: 2 (lower is better)
Translates to: PATFVPSFLPLTCVILSKETSES*LDFASA
Trigger: TGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTC...CTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp ACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTCTCAAAGGAGAATaGATAAGGAAATTTGTTTTC +
Preference number: 2 (lower is better)
Translates to: TSLENEWRQCVCVCVCVCALKGE*IRKFVF
Trigger: GAAAACAAATTTCCTTATGCATTCTCCTTTGAGAGC...ACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR GCA 90 bp AGAGGCCAGTCCTGGGAGGTGAGAGCAGCATTGATTAGTGTTTTCAGAGTTCAGGCTCTCAAAGGAGAATaGATAAGGAAATTTGTTTTC +
Preference number: 2 (lower is better)
Translates to: RGQSWEVRAALISVFRVQALKGE*IRKFVF
Trigger: GAAAACAAATTTCCTTATGCATTCTCCTTTGAGAGC...CTGAACTCTGAAAACACTAATCAATGCTGCTCTCACCTCCCAGGACTGGCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR TCA 90 bp TTCTTGTGTATAACCCAGATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGCATTTCCAGAGAGGCTaGAAGTCATTATCAGCAGAT +
Preference number: 2 (lower is better)
Translates to: FLCITQITQKPLRVGLTLHFQRG*KSLSAD
Trigger: ATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATG...CAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTATCTGGGTTATACACAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR TCA 72 bp TGGGCCGAGCACAGGGATCTGATGCAGCAGGCTCTGTaGCTGGGTCCAGGACTCCCCTTCCTCCCTGCAGCC +
Preference number: 3 (lower is better)
Translates to: WAEHRDLMQQAL*LGPGLPFLPAA
Trigger: GGCTGCAGGGAGGAAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCGGCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 72 bp CACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTaGCCACGCGGCAGTGTGCAGGACACCAAGTCCCTG +
Preference number: 3 (lower is better)
Translates to: HSWPTDAAWEGT*PRGSVQDTKSL
Trigger: CAGGGACTTGGTGTCCTGCACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 72 bp ACTGCCCCACTTCGAGCTGCACAGCTGGCCCACAGATaGAGCCTGGGAAGGAACCTGCCCACGCGGCAGTGT +
Preference number: 3 (lower is better)
Translates to: TAPLRAAQLAHR*SLGRNLPTRQC
Trigger: ACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGGGCAGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR TCA 72 bp GAAGCTCTGGCTGACTGTGGGCCGAGCACAGGGATCTaGTGCAGCAGGCTCTGTGACTGGGTCCAGGACTCC +
Preference number: 3 (lower is better)
Translates to: EALADCGPSTGI*CSRLCDWVQDS
Trigger: GGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCGGCCCACAGTCAGCCAGAGCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CAA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTCGCACTGGCAAAGCTTaGGCCCCAGAGATGGGAGGA +
Preference number: 3 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLRTGKA*APEMGG
Trigger: TCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGCG...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CAA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTCCACTTCCTGTCCACTaGACAGCCTGCAGGTACCGC +
Preference number: 3 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLPLPVH*TACRYR
Trigger: GCGGTACCTGCAGGCTGTCAAGTGGACAGGAAGTGG...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 72 bp GTTAGGGCAGGGCCACTTCCTGTCCACTTGACAGCCTaGAGGTACCGCACTGGCAAAGCTTTGGCCCCAGAG +
Preference number: 3 (lower is better)
Translates to: VRAGPLPVHLTA*RYRTGKALAPE
Trigger: CTCTGGGGCCAAAGCTTTGCCAGTGCGGTACCTGCAGGCTGTCAAGTGGACAGGAAGTGGCCCTGCCCTAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 72 bp GGCTCTGTGACTGGGTCCAGGACTCCCCTTCCTCCCTaGAGCCCACAAGCCTGGAGAATGAGTGGAGACAGT +
Preference number: 3 (lower is better)
Translates to: GSVTGSRTPLPP*SPQAWRMSGDS
Trigger: ACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGAGTCCTGGACCCAGTCACAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp CCTCTCACGGGCTGGCTCTCCTGCTCTAAGTCAGGGTaGGTTCTCCATGTCCAGCCTACTGCTTCCCCACCT +
Preference number: 3 (lower is better)
Translates to: PLTGWLSCSKSG*VLHVQPTASPP
Trigger: AGGTGGGGAAGCAGTAGGCTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp GATGAGGAGTGGATACAGAGAAAGGCAGTGGGCACATaGCCGCAGACAGGTGGGAAAGAGCCGCAGCCGCTG +
Preference number: 3 (lower is better)
Translates to: DEEWIQRKAVGT*PQTGGKEPQPL
Trigger: CAGCGGCTGCGGCTCTTTCCCACCTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCCACTCCTCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR GCA 72 bp GGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTaGACAGCTGGCCCACAGATGCAGCCTGGGAAGGAA +
Preference number: 3 (lower is better)
Translates to: GILCAVNCPTSS*TAGPQMQPGKE
Trigger: TTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp CCTGCCCACGCGGCAGTGTGCAGGACACCAAGTCCCTaGTCACTGAGTAACCTGAGTTGGACCCCAACTTCT +
Preference number: 3 (lower is better)
Translates to: PAHAAVCRTPSP*SLSNLSWTPTS
Trigger: AGAAGTTGGGGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGCGTGGGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CAA 90 bp GTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACCTTCTCTGGGCCTCAGTCCCACTTCCTGTCCACTaGACAGCCTGCAGGTACCGC +
Preference number: 3 (lower is better)
Translates to: VWICLLVLGAFNLLWASVPLPVH*TACRYR
Trigger: GCGGTACCTGCAGGCTGTCAAGTGGACAGGAAGTGG...GACTGAGGCCCAGAGAAGGTTAAAGGCTCCGAGGACCAATAGGCAGATCCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp ACTTCCTGTCCACTTGACAGCCTGCAGGTACCGCACTaGCAAAGCTTTGGCCCCAGAGATGGGAGGACATGG +
Preference number: 3 (lower is better)
Translates to: TSCPLDSLQVPH*QSFGPRDGRTW
Trigger: CCATGTCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGCGGTACCTGCAGGCTGTCAAGTGGACAGGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp ACTGCTTCCCCACCTCAAGCCTATGTGGTCACTGTGTaGTTCAGTGACGGCCTCTCTTGCCTGAGGATAGGC +
Preference number: 3 (lower is better)
Translates to: TASPPQAYVVTV*FSDGLSCLRIG
Trigger: GCCTATCCTCAGGCAAGAGAGGCCGTCACTGAACCACACAGTGACCACATAGGCTTGAGGTGGGGAAGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp GGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTaGCTCTCCTGCTCTAAGTCAGGGTGGGTTCTCCAT +
Preference number: 3 (lower is better)
Translates to: GVERTQTNPLTG*LSCSKSGWVLH
Trigger: ATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp AAAGAGCGGGTCCCAGGGCCCGGTAGAGGCCAGTCCTaGGAGGTGAGAGCAGCATTGATTAGTGTTTTCAGA +
Preference number: 3 (lower is better)
Translates to: KERVPGPGRGQS*EVRAALISVFR
Trigger: TCTGAAAACACTAATCAATGCTGCTCTCACCTCCCAGGACTGGCCTCTACCGGGCCCTGGGACCCGCTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR TCA 72 bp GTTGGGGAACAGGCAGCACCAGGGTCAGTGTGTGTGTaGTACAAGAGTGCACTGGAGAGAAGGCCTGTCCAA +
Preference number: 3 (lower is better)
Translates to: VGEQAAPGSVCV*YKSALERRPVQ
Trigger: TTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACACACACTGACCCTGGTGCTGCCTGTTCCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR TCA 72 bp GCCCCTGAGGAGGGAAACAGGGTCAGGATTCCAGTATaGGGTTATGGGATACCCGAAGTAAGCAGGCTGGCA +
Preference number: 3 (lower is better)
Translates to: APEEGNRVRIPV*GYGIPEVSRLA
Trigger: TGCCAGCCTGCTTACTTCGGGTATCCCATAACCTCATACTGGAATCCTGACCCTGTTTCCCTCCTCAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR GCA 72 bp GGCAGCACCAGGGTCAGTGTGTGTGTGATACAAGAGTaGACTGGAGAGAAGGCCTGTCCAAAGCAGGACACA +
Preference number: 3 (lower is better)
Translates to: GSTRVSVCVIQE*TGEKACPKQDT
Trigger: TGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACACACACTGACCCTGGTGCTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp TGGCCTGAAACAGATACTCAGCGTCGAGCTGTCGGTTaGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAG +
Preference number: 3 (lower is better)
Translates to: WPETDTQRRAVG*HPLCSKLPHFE
Trigger: CTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGACAGCTCGACGCTGAGTATCTGTTTCAGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp CACCAGGGTCAGTGTGTGTGTGATACAAGAGTGCACTaGAGAGAAGGCCTGTCCAAAGCAGGACACAGGACG +
Preference number: 3 (lower is better)
Translates to: HQGQCVCDTRVH*REGLSKAGHRT
Trigger: CGTCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACACACACTGACCCTGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp CCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTaGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: PSSLQPTSLENE*RQCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp GGAGGGAAACAGGGTCAGGATTCCAGTATGAGGTTATaGGATACCCGAAGTAAGCAGGCTGGCAGGCCACAG +
Preference number: 3 (lower is better)
Translates to: GGKQGQDSSMRL*DTRSKQAGRPQ
Trigger: CTGTGGCCTGCCAGCCTGCTTACTTCGGGTATCCCATAACCTCATACTGGAATCCTGACCCTGTTTCCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
3UTR TCA 72 bp AGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTaGGGCAGAGAGGCAGAGGGTCTGTGGGCGCCTGTC +
Preference number: 3 (lower is better)
Translates to: RKNSYSSAKKGH*GREAEGLWAPV
Trigger: GACAGGCGCCCACAGACCCTCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp GAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGGTaGAAAGGACTCAGACAAATCCTCTCACGGGCTGGC +
Preference number: 3 (lower is better)
Translates to: ESHYQQMRQSSG*KGLRQILSRAG
Trigger: GCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp ATGGCGTTTTCGTCTTCTTGTACATTACGGAAGCTCTaGCTGACTGTGGGCCGAGCACAGGGATCTGATGCA +
Preference number: 3 (lower is better)
Translates to: MAFSSSCTLRKL*LTVGRAQGSDA
Trigger: TGCATCAGATCCCTGTGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAACGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CAA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGACCTCTGAGAGTTGGCTaGACTTTGCCTCTGCAGCTG +
Preference number: 3 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRPLRVG*TLPLQL
Trigger: CAGCTGCAGAGGCAAAGTCAAGCCAACTCTCAGAGG...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CAA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACACTCAATGAGATTTaGGGGAGCAGAAAGAGAAAG +
Preference number: 3 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLTLNEI*GSRKRK
Trigger: CTTTCTCTTTCTGCTCCCCAAAATCTCATTGAGTGT...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR GCA 72 bp TCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATaGGACAGAGCTCGGGGTGGAAAGGACTCAGACAAA +
Preference number: 3 (lower is better)
Translates to: SFPERLKVIISR*DRARGGKDSDK
Trigger: TTTGTCTGAGTCCTTTCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR-3UTR CAA 90 bp CCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATTCTGAGCAAGAGAGTTGGCTTGACTTaGCCTCTGCAGCTGCTAAGC +
Preference number: 3 (lower is better)
Translates to: PATFVPSFLPLTCVILSKRVGLT*PLQLLS
Trigger: GCTTAGCAGCTGCAGAGGCAAAGTCAAGCCAACTCT...CTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CCA 72 bp GTGTATAACCCAGATAACACAGAAACCTCTGAGAGTTaGCTTGACTTTGCCTCTGCAGCTGCTAAGCTGAAC +
Preference number: 3 (lower is better)
Translates to: VYNPDNTETSES*LDFASAAAKLN
Trigger: GTTCAGCTTAGCAGCTGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTATCTGGGTTATACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCCACTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCGGCGTGCCAGGCGAGTaGGGCTGTTCTCCGCCAGTG +
Preference number: 4 (lower is better)
Translates to: PTSSCTAGPQMQPGKEPAGVPGE*GCSPPV
Trigger: CACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCC...GGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GGCCCAGGCCTGCGTGGAAGCCTAGGTGATCACACTTTAAGCTGGTGCAGCCCCTCCACTCTGCCCTGGTaGAGCTGGGCCGCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: GPGLRGSLGDHTLSWCSPSTLPW*SWAASQ
Trigger: CTGGCTGGCGGCCCAGCTGCACCAGGGCAGAGTGGA...GGGGCTGCACCAGCTTAAAGTGTGATCACCTAGGCTTCCACGCAGGCCTGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp AGCGTAGGGAAACACGGGTACAGCCGCTGGCATCCAGCTCAGGGCCTTGAGCACGCTGTTCTCCGCCAGTaGGAGCGTACGCAGCCTCGG +
Preference number: 4 (lower is better)
Translates to: SVGKHGYSRWHPAQGLEHAVLRQ*ERTQPR
Trigger: CCGAGGCTGCGTACGCTCTCACTGGCGGAGAACAGC...GTGCTCAAGGCCCTGAGCTGGATGCCAGCGGCTGTACCCGTGTTTCCCTACGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCCACTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCCTGGAGAGATTGAGGTaGGTCAGGTGGGGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: PTSSCTAGPQMQPGKEPALERLR*VRWGRA
Trigger: GGCCCTGCCCCACCTGACTCACCTCAATCTCTCCAG...GGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CCCACTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCAGAGAGGGTGGGTGCTaGCATTCCGGCTGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: PTSSCTAGPQMQPGKEPAREGGC*HSGWGW
Trigger: CCAACCCCAGCCGGAATGCCAGCACCCACCCTCTCT...GGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCCACTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCACTTGCTCTCGACGCTaGGAGATAGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: PTSSCTAGPQMQPGKEPATCSRR*EIARPR
Trigger: CCTGGGCCTGGCTATCTCTCAGCGTCGAGAGCAAGT...GGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCCACTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCAGCTTGGATGTCCAGTaGGAGCACCGAGGGGACCTG +
Preference number: 4 (lower is better)
Translates to: PTSSCTAGPQMQPGKEPASLDVQ*EHRGDL
Trigger: CAGGTCCCCTCGGTGCTCTCACTGGACATCCAAGCT...GGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CAGATGCAGCCTGGGAAGGAACCTGCCCACGCGGCAGTGTGCAGGACACCAAGTGGACAGTGGAGAGGCTaGCCAGCCTTCAGAGGGTGC +
Preference number: 4 (lower is better)
Translates to: QMQPGKEPAHAAVCRTPSGQWRG*PAFRGC
Trigger: GCACCCTCTGAAGGCTGGTCAGCCTCTCCACTGTCC...ACTTGGTGTCCTGCACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp TCGGTTGGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCACAGCTGGCTCCACTCTGCCCTGGTaGAGCTGGGCCGCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: SVGILCAVNCPTSSCTAGSTLPW*SWAASQ
Trigger: CTGGCTGGCGGCCCAGCTGCACCAGGGCAGAGTGGA...GCCAGCTGTGCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGAGCACCGAGGGGACCTaGAGCAGGCCAAGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: SPSSLQPTSLENEWRQCVSTEGT*SRPRPW
Trigger: CCACGGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCT...CACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp AGCGTAGGGAAACACGGGTACAGCCGCTGGCATCCAGCTCAGGGCCTTGAGCACTCTGTAAGTGGGGTGTaGAGGAAGCTGCCCGCCCTG +
Preference number: 4 (lower is better)
Translates to: SVGKHGYSRWHPAQGLEHSVSGV*RKLPAL
Trigger: CAGGGCGGGCAGCTTCCTTCACACCCCACTTACAGA...GTGCTCAAGGCCCTGAGCTGGATGCCAGCGGCTGTACCCGTGTTTCCCTACGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCGGGAGAGAGGGTGGGTaGTGGCATTCCGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTGREGG*WHSGWG
Trigger: ACCCCAGCCGGAATGCCAGCACCCACCCTCTCTCCC...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTGCTCCATCCACATCCACTCTaGCCTGGTGCAGCTGGGCCG +
Preference number: 4 (lower is better)
Translates to: ARGGKDSDKSSHGLALLLHPHPL*PGAAGP
Trigger: CGGCCCAGCTGCACCAGGGCAGAGTGGATGTGGATG...GAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCCAGGCCAACTGGAACTaGGCCTGTGGTTCCGGGGCC +
Preference number: 4 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTQANWN*ACGSGA
Trigger: GGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTG...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCCACGCTTTGTATTGTTGGCTaGGCTTCTGCCGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: LRAAQLAHRCSLGRNLPTLCIVG*ASAGGG
Trigger: TCCTCCGCCGGCAGAAGCTCAGCCAACAATACAAAG...CGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTGGCCCAGGGTCAGCATaGCCAGGAGTAGCAGGATCT +
Preference number: 4 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLGPGSA*PGVAGS
Trigger: AGATCCTGCTACTCCTGGCCATGCTGACCCTGGGCC...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTTCCAGGTTCAGGAGCTaGGAGAGAGGGTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLSRFRS*ERGWVL
Trigger: CAGCACCCACCCTCTCTCCCAGCTCCTGAACCTGGA...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CAGATGCAGCCTGGGAAGGAACCTGCCCACGCGGCAGTGTGCAGGACACCAAGTGCAGGCTGGCCAGGCTaGCAAAGGTATAGGGTGGAA +
Preference number: 4 (lower is better)
Translates to: QMQPGKEPAHAAVCRTPSAGWPG*QRYRVE
Trigger: TTCCACCCTATACCTTTGCCAGCCTGGCCAGCCTGC...ACTTGGTGTCCTGCACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCCACGTTAGCCTCTGCAGGCTaGCCAGGCTGGCAAAGGTAT +
Preference number: 4 (lower is better)
Translates to: LRAAQLAHRCSLGRNLPTLASAG*PGWQRY
Trigger: ATACCTTTGCCAGCCTGGCCAGCCTGCAGAGGCTAA...CGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TCCCCTTCCTCCCTGCAGCCCACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGCCACCAGGGCTCCCGTaGCCACATCCAGACCAGGAT +
Preference number: 4 (lower is better)
Translates to: SPSSLQPTSLENEWRQCVPPGLP*PHPDQD
Trigger: ATCCTGGTCTGGATGTGGCCACGGGAGCCCTGGTGG...CACACACTGTCTCCACTCATTCTCCAGGCTTGTGGGCTGCAGGGAGGAAGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TCGGTTGGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCACAGCTGGCCCACCAGGGCTCCCGTaGCCACATCCAGACCAGGAT +
Preference number: 4 (lower is better)
Translates to: SVGILCAVNCPTSSCTAGPPGLP*PHPDQD
Trigger: ATCCTGGTCTGGATGTGGCCACGGGAGCCCTGGTGG...GCCAGCTGTGCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GTCGAGCTGTCGGTTGGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCACTTGCTCTCGACGCTaGGAGATAGCCAGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: VELSVGILCAVNCPTSSCTCSRR*EIARPR
Trigger: CCTGGGCCTGGCTATCTCTCAGCGTCGAGAGCAAGT...GCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGACAGCTCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTAGGGGGCGTGCCAGGCGAGTaGGGCTGTTCTCCGCCAGTG +
Preference number: 4 (lower is better)
Translates to: LSEREGVYVASVLGSWLGGVPGE*GCSPPV
Trigger: CACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCC...CCCTAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GGATACAGAGAAAGGCAGTGGGCACATGGCCGCAGACAGGTGGGAAAGAGCCGCTGCCTGGCAGGAGGCTaGAGCTGTTGTTCCGCAGAT +
Preference number: 4 (lower is better)
Translates to: GYRERQWAHGRRQVGKSRCLAGG*SCCSAD
Trigger: ATCTGCGGAACAACAGCTTCAGCCTCCTGCCAGGCA...GCGGCTCTTTCCCACCTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CAGATGCAGCCTGGGAAGGAACCTGCCCACGCGGCAGTGTGCAGGACACCAAGTTTAGCCTCTGCAGGCTaGCCAGGCTGGCAAAGGTAT +
Preference number: 4 (lower is better)
Translates to: QMQPGKEPAHAAVCRTPSLASAG*PGWQRY
Trigger: ATACCTTTGCCAGCCTGGCCAGCCTGCAGAGGCTAA...ACTTGGTGTCCTGCACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp AGCGTAGGGAAACACGGGTACAGCCGCTGGCATCCAGCTCAGGGCCTTGAGCACAGGGACAACTCCTCCTaGGAGCCAAAGCGGCAGATT +
Preference number: 4 (lower is better)
Translates to: SVGKHGYSRWHPAQGLEHRDNSS*EPKRQI
Trigger: AATCTGCCGCTTTGGCTCCCAGGAGGAGTTGTCCCT...GTGCTCAAGGCCCTGAGCTGGATGCCAGCGGCTGTACCCGTGTTTCCCTACGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 72 bp AACACGGGTACAGCCGCTGGCATCCAGCTCAGGGCCTaGAGCACACAAAGCAAACCCTCTGCCTTGGCGCAA +
Preference number: 4 (lower is better)
Translates to: NTGTAAGIQLRA*STQSKPSALAQ
Trigger: TTGCGCCAAGGCAGAGGGTTTGCTTTGTGTGCTCAAGGCCCTGAGCTGGATGCCAGCGGCTGTACCCGTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACCTTCTCTGGGCCTCAGTCTGGTGGCCAGCGTGGTaGGGACGATGGCAGAGACCA +
Preference number: 4 (lower is better)
Translates to: VWICLLVLGAFNLLWASVWWPAW*GRWQRP
Trigger: TGGTCTCTGCCATCGTCCTCACCACGCTGGCCACCA...GACTGAGGCCCAGAGAAGGTTAAAGGCTCCGAGGACCAATAGGCAGATCCAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCTCTCACGGGCTGGCTCTCCTGCTCTAAGTCAGGGTGGGTTCTCCATGTCCAGCTTTGTATTGTTGGCTaGGCTTCTGCCGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: PLTGWLSCSKSGWVLHVQLCIVG*ASAGGG
Trigger: TCCTCCGCCGGCAGAAGCTCAGCCAACAATACAAAG...CTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CAGAGGGTCTGTGGGCGCCTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGTGTAGGTTTAGCCTCTaGAGGCTGGCCAGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: QRVCGRLSEREGVYVASVCRFSL*RLARLA
Trigger: TGCCAGCCTGGCCAGCCTGCAGAGGCTAAACCTACA...CACACTTGCTACATATACCCCCTCCCTCTCAGACAGGCGCCCACAGACCCTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CCTCTCACGGGCTGGCTCTCCTGCTCTAAGTCAGGGTGGGTTCTCCATGTCCAGCATCCAGACCAGGATTaGTGGAGAGGTCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: PLTGWLSCSKSGWVLHVQHPDQD*WRGPAL
Trigger: CAGAGCTGGACCTCTCCACCAATCCTGGTCTGGATG...CTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp GCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTGCTCACCCATGGCATTGCCTaGCAGGAGGCTGAAGCTGTT +
Preference number: 4 (lower is better)
Translates to: ARGGKDSDKSSHGLALLLTHGIA*QEAEAV
Trigger: AACAGCTTCAGCCTCCTGCCAGGCAATGCCATGGGT...GAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCTCTCACGGGCTGGCTCTCCTGCTCTAAGTCAGGGTGGGTTCTCCATGTCCAGACACATTCAGGTAGATaGGTCTCGGGAACACGGCCA +
Preference number: 4 (lower is better)
Translates to: PLTGWLSCSKSGWVLHVQTHSGR*VSGTRP
Trigger: TGGCCGTGTTCCCGAGACTCATCTACCTGAATGTGT...CTGGACATGGAGAACCCACCCTGACTTAGAGCAGGAGAGCCAGCCCGTGAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CGCCTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTACCAGCCTTCAGAGGGTaGGTGGAGGTCCTCACTGCC +
Preference number: 4 (lower is better)
Translates to: RLSEREGVYVASVLGSWLPAFRG*VEVLTA
Trigger: GGCAGTGAGGACCTCCACGCACCCTCTGAAGGCTGG...TAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTAGGGCATCCACATCCACTCTaGCCTGGTGCAGCTGGGCCG +
Preference number: 4 (lower is better)
Translates to: LSEREGVYVASVLGSWLGHPHPL*PGAAGP
Trigger: CGGCCCAGCTGCACCAGGGCAGAGTGGATGTGGATG...CCCTAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGGTGGAACAGCCGCCGGAGACTaGTCTCCAGGCCACCCATGG +
Preference number: 4 (lower is better)
Translates to: FPERLKVIISRCDRARGGTAAGD*SPGHPW
Trigger: CCATGGGTGGCCTGGAGACCAGTCTCCGGCGGCTGT...TCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TCGGTTGGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCACAGCTGGCCAGGCTTTGTATTGTTaGCTGAGCTTCTGCCGGCGG +
Preference number: 4 (lower is better)
Translates to: SVGILCAVNCPTSSCTAGQALYC*LSFCRR
Trigger: CCGCCGGCAGAAGCTCAGCCAACAATACAAAGCCTG...GCCAGCTGTGCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAAGCTTGGATGTCCAGTaGGAGCACCGAGGGGACCTG +
Preference number: 4 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLSLDVQ*EHRGDL
Trigger: CAGGTCCCCTCGGTGCTCTCACTGGACATCCAAGCT...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp TTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCACAGCTGGAGAGATTGAGGTaGGTCAGGTGGGGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: FSSSCTLRKLWLTVGRAQLERLR*VRWGRA
Trigger: GGCCCTGCCCCACCTGACTCACCTCAATCTCTCCAG...CTGTGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCAGTTTCTGGAGAGATTaGGGTGAGTCAGGTGGGGCA +
Preference number: 4 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTSFWRD*GESGGA
Trigger: TGCCCCACCTGACTCACCTCAATCTCTCCAGAAACT...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTGCTCAGTCTGAGATGCAGGTaGGGGAGTTTCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: ARGGKDSDKSSHGLALLLSLRCR*GSFWRD
Trigger: ATCTCTCCAGAAACTCCCTCACCTGCATCTCAGACT...GAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCGCCATGTTAAGAACATaGAGGGTGGGGATCCCAGAG +
Preference number: 4 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTAMLRT*RVGIPE
Trigger: CTCTGGGATCCCCACCCTTCATGTTCTTAACATGGC...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp TTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCACAGCCAGCCTTCAGAGGGTaGGTGGAGGTCCTCACTGCC +
Preference number: 4 (lower is better)
Translates to: FSSSCTLRKLWLTVGRAQPAFRG*VEVLTA
Trigger: GGCAGTGAGGACCTCCACGCACCCTCTGAAGGCTGG...CTGTGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCGCAACCGCCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATGGGAGAGAGGGTGGGTaGTGGCATTCCGGCTGGGGT +
Preference number: 4 (lower is better)
Translates to: AQPPSYFCSQFSSIDLRDGREGG*WHSGWG
Trigger: ACCCCAGCCGGAATGCCAGCACCCACCCTCTCTCCC...ATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGGCGGTTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCTGCAAGGCATTGTCCTaGAGAAGCAACGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTCKALS*RSNVCR
Trigger: CCTGCAGACGTTGCTTCTGCAGGACAATGCCTTGCA...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp GGCCCAGGCCTGCGTGGAAGCCTAGGTGATCACACTTTAAGCTGGTGCAGCCCCATGAGGACATTGCTGTaGAGGTCTAATTGCTCCACC +
Preference number: 4 (lower is better)
Translates to: GPGLRGSLGDHTLSWCSPMRTLL*RSNCST
Trigger: GGTGGAGCAATTAGACCTCCACAGCAATGTCCTCAT...GGGGCTGCACCAGCTTAAAGTGTGATCACCTAGGCTTCCACGCAGGCCTGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp GACATGGACTTGATTCATTTTGGCTTCGTCAGCTCTCTGAGCCATGAGGCTCTCACAGCCGCCGGAGACTaGTCTCCAGGCCACCCATGG +
Preference number: 4 (lower is better)
Translates to: DMDLIHFGFVSSLSHEALTAAGD*SPGHPW
Trigger: CCATGGGTGGCCTGGAGACCAGTCTCCGGCGGCTGT...GAGAGCCTCATGGCTCAGAGAGCTGACGAAGCCAAAATGAATCAAGTCCATGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGCTGCCCTGGTGCAGCTaGGCCGCCAGCCAGCCATTG +
Preference number: 4 (lower is better)
Translates to: SSFPERLKVIISRCDRARLPWCS*AASQPL
Trigger: CAATGGCTGGCTGGCGGCCCAGCTGCACCAGGGCAG...CCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GCGCAACCGCCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATGGAAGCTGCCCGCCCTaGGCATTCCCATCGAGTTCC +
Preference number: 4 (lower is better)
Translates to: AQPPSYFCSQFSSIDLRDGSCPP*AFPSSS
Trigger: GGAACTCGATGGGAATGCTCAGGGCGGGCAGCTTCC...ATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGGCGGTTGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTATGTAGGTTTAGCCTCTaGAGGCTGGCCAGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLCRFSL*RLARLA
Trigger: TGCCAGCCTGGCCAGCCTGCAGAGGCTAAACCTACA...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp AGAAAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGCACCGAGGGGACCTaGAGCAGGCCAAGGCCGTGG +
Preference number: 4 (lower is better)
Translates to: RKEEFILFCKEGTLRQRGSTEGT*SRPRPW
Trigger: CCACGGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCT...GCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CGCCTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTAGCAGGCTGGCCAGGCTaGCAAAGGTATAGGGTGGAA +
Preference number: 4 (lower is better)
Translates to: RLSEREGVYVASVLGSWLAGWPG*QRYRVE
Trigger: TTCCACCCTATACCTTTGCCAGCCTGGCCAGCCTGC...TAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAGGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CAGAGGGTCTGTGGGCGCCTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGGGCAGGTGGCTTAACTaGTTCTCAGCAAGGTTAAGG +
Preference number: 4 (lower is better)
Translates to: QRVCGRLSEREGVYVASVGRWLN*FSARLR
Trigger: CCTTAACCTTGCTGAGAACCAGTTAAGCCACCTGCC...CACACTTGCTACATATACCCCCTCCCTCTCAGACAGGCGCCCACAGACCCTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGACTGCCCTGGTGCAGCTaGGCCGCCAGCCAGCCATTG +
Preference number: 4 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRLPWCS*AASQPL
Trigger: CAATGGCTGGCTGGCGGCCCAGCTGCACCAGGGCAG...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 72 bp CACTTGACAGCCTGCAGGTACCGCACTGGCAAAGCTTaGGCCCCAGAGATGGGAGGACATGGACTTGATTCA +
Preference number: 4 (lower is better)
Translates to: HLTACRYRTGKA*APEMGGHGLDS
Trigger: TGAATCAAGTCCATGTCCTCCCATCTCTGGGGCCAAAGCTTTGCCAGTGCGGTACCTGCAGGCTGTCAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp TGTGTGATACAAGAGTGCACTGGAGAGAAGGCCTGTCCAAAGCAGGACACAGGACCAGACCACCACTGTTaGGAGCCATGCCTGTGGCAA +
Preference number: 4 (lower is better)
Translates to: CVIQECTGEKACPKQDTGPDHHC*EPCLWQ
Trigger: TTGCCACAGGCATGGCTCTCAACAGTGGTGGTCTGG...TCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGAGCTGTTCTCCGCCAGTaGGAGCGTACGCAGCCTCGG +
Preference number: 4 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRAVLRQ*ERTQPR
Trigger: CCGAGGCTGCGTACGCTCTCACTGGCGGAGAACAGC...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCTCTGGAAGGCCTCAATaGTGTTGCAGCTCAAGTCTA +
Preference number: 4 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTSGRPQ*CCSSSL
Trigger: TAGACTTGAGCTGCAACAGCATTGAGGCCTTCCAGA...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCTCGGGGTGGAAAGGACTCAGACAAATCCTCTCACGGGCTGGCTCTCCTGCTCTCCCATCGAGTTCCCTaGCATGTTAAGAACATGAAG +
Preference number: 4 (lower is better)
Translates to: ARGGKDSDKSSHGLALLLSHRVP*HVKNMK
Trigger: CTTCATGTTCTTAACATGGCAGGGAACTCGATGGGA...GAGCAGGAGAGCCAGCCCGTGAGAGGATTTGTCTGAGTCCTTTCCACCCCGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp TTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCACAGTGTTGGCTGAGCTTCTaGCGGCGGAGGAAGCAGATG +
Preference number: 4 (lower is better)
Translates to: FSSSCTLRKLWLTVGRAQCWLSF*RRRKQM
Trigger: CATCTGCTTCCTCCGCCGGCAGAAGCTCAGCCAACA...CTGTGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTACAGGCTTTGTATTGTTaGCTGAGCTTCTGCCGGCGG +
Preference number: 4 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLQALYC*LSFCRR
Trigger: CCGCCGGCAGAAGCTCAGCCAACAATACAAAGCCTG...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GCGTTTTCGTCTTCTTGTACATTACGGAAGCTCTGGCTGACTGTGGGCCGAGCAAGTTTCTGGAGAGATTaGGGTGAGTCAGGTGGGGCA +
Preference number: 4 (lower is better)
Translates to: AFSSSCTLRKLWLTVGRASFWRD*GESGGA
Trigger: TGCCCCACCTGACTCACCTCAATCTCTCCAGAAACT...TGCTCGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAACGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp TTCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGACAGTGGAGAGGCTaGCCAGCCTTCAGAGGGTGC +
Preference number: 4 (lower is better)
Translates to: FFISREAESHYQQMRQSSGQWRG*PAFRGC
Trigger: GCACCCTCTGAAGGCTGGTCAGCCTCTCCACTGTCC...CGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATGCCTGGTGGAAGCTGCCCGCCCTaGGCATTCCCATCGAGTTCC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCPYYFSMPGGSCPP*AFPSSS
Trigger: GGAACTCGATGGGAATGCTCAGGGCGGGCAGCTTCC...ACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTGTCGCTCCACCAGATTaGCATGCAGGCTGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCVAPPD*HAGCSQ
Trigger: CTGGGAACAGCCTGCATGGCAATCTGGTGGAGCGAC...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp TTTAAGATGAGGAGTGGATACAGAGAAAGGCAGTGGGCACATGGCCGCAGACAGCTGAGTGGATTTCCCTaGAAGTACAGCCGCCGGAGA +
Preference number: 4 (lower is better)
Translates to: FKMRSGYRERQWAHGRRQLSGFP*KYSRRR
Trigger: TCTCCGGCGGCTGTACTTGCAGGGAAATCCACTCAG...CTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCCACTCCTCATCTTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAAGTACCTGCAGCTGCTaGAGGCTGAAGTCTGAGATG +
Preference number: 4 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLSTCSC*RLKSEM
Trigger: CATCTCAGACTTCAGCCTCCAGCAGCTGCAGGTACT...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp AGAAAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGAGAGGGTGGGTGCTaGCATTCCGGCTGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: RKEEFILFCKEGTLRQRGREGGC*HSGWGW
Trigger: CCAACCCCAGCCGGAATGCCAGCACCCACCCTCTCT...GCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TGTGTGATACAAGAGTGCACTGGAGAGAAGGCCTGTCCAAAGCAGGACACAGGAAGGGACAACTCCTCCTaGGAGCCAAAGCGGCAGATT +
Preference number: 4 (lower is better)
Translates to: CVIQECTGEKACPKQDTGRDNSS*EPKRQI
Trigger: AATCTGCCGCTTTGGCTCCCAGGAGGAGTTGTCCCT...TCCTGTGTCCTGCTTTGGACAGGCCTTCTCTCCAGTGCACTCTTGTATCACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 72 bp GTAGAGTGGGGTAGAGAGAATGGCGTTTTCGTCTTCTaGTACATTACGGAAGCTCTGGCTGACTGTGGGCCG +
Preference number: 4 (lower is better)
Translates to: VEWGRENGVFVF*YITEALADCGP
Trigger: CGGCCCACAGTCAGCCAGAGCTTCCGTAATGTACAAGAAGACGAAAACGCCATTCTCTCTACCCCACTCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp TTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGGTGGAACACATTCAGGTAGATaGGTCTCGGGAACACGGCCA +
Preference number: 4 (lower is better)
Translates to: FPERLKVIISRCDRARGGTHSGR*VSGTRP
Trigger: TGGCCGTGTTCCCGAGACTCATCTACCTGAATGTGT...TCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp AGAAAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCTCTGTAAGTGGGGTGTaGAGGAAGCTGCCCGCCCTG +
Preference number: 4 (lower is better)
Translates to: RKEEFILFCKEGTLRQRGSVSGV*RKLPAL
Trigger: CAGGGCGGGCAGCTTCCTTCACACCCCACTTACAGA...GCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATGCCTGGTTCCAGGTTCAGGAGCTaGGAGAGAGGGTGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCPYYFSMPGSRFRS*ERGWVL
Trigger: CAGCACCCACCCTCTCTCCCAGCTCCTGAACCTGGA...ACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTCATCCAGACCAGGATTaGTGGAGAGGTCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCHPDQD*WRGPAL
Trigger: CAGAGCTGGACCTCTCCACCAATCCTGGTCTGGATG...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTACCCATGGCATTGCCTaGCAGGAGGCTGAAGCTGTT +
Preference number: 4 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCTHGIA*QEAEAV
Trigger: AACAGCTTCAGCCTCCTGCCAGGCAATGCCATGGGT...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTGCCATGTTAAGAACATaGAGGGTGGGGATCCCAGAG +
Preference number: 4 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCAMLRT*RVGIPE
Trigger: CTCTGGGATCCCCACCCTTCATGTTCTTAACATGGC...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGAGTCGCTCCACCAGATTaGCATGCAGGCTGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRVAPPD*HAGCSQ
Trigger: CTGGGAACAGCCTGCATGGCAATCTGGTGGAGCGAC...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp GCGCAACCGCCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATTCTAGTACCTGCAGCTaGTGGAGGCTGAAGTCTGAG +
Preference number: 4 (lower is better)
Translates to: AQPPSYFCSQFSSIDLRDSSTCS*WRLKSE
Trigger: CTCAGACTTCAGCCTCCAGCAGCTGCAGGTACTAGA...ATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGGCGGTTGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTTGCAAGGCATTGTCCTaGAGAAGCAACGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCCKALS*RSNVCR
Trigger: CCTGCAGACGTTGCTTCTGCAGGACAATGCCTTGCA...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp AAAGCTTTGGCCCCAGAGATGGGAGGACATGGACTTGATTCATTTTGGCTTCGTCTGAGTGGATTTCCCTaGAAGTACAGCCGCCGGAGA +
Preference number: 4 (lower is better)
Translates to: KALAPEMGGHGLDSFWLRLSGFP*KYSRRR
Trigger: TCTCCGGCGGCTGTACTTGCAGGGAAATCCACTCAG...ACGAAGCCAAAATGAATCAAGTCCATGTCCTCCCATCTCTGGGGCCAAAGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATTCTGAGCAAGGGCCCAGGGTCAGCATaGCCAGGAGTAGCAGGATCT +
Preference number: 4 (lower is better)
Translates to: PATFVPSFLPLTCVILSKGPGSA*PGVAGS
Trigger: AGATCCTGCTACTCCTGGCCATGCTGACCCTGGGCC...CTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTATAGAAGCCCAGTaGGGAGACCAGGATGCTCTG +
Preference number: 4 (lower is better)
Translates to: LENEWRQCVCVCVCVCVCCIEAQ*GDQDAL
Trigger: CAGAGCATCCTGGTCTCCCCACTGGGCTTCTATACA...ACACACACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CCAGTGAGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAATGAGGACATTGCTGTaGAGGTCTAATTGCTCCACC +
Preference number: 4 (lower is better)
Translates to: PVREGSRSGSAYWSSEPLMRTLL*RSNCST
Trigger: GGTGGAGCAATTAGACCTCCACAGCAATGTCCTCAT...TAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCTCACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp ACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTACCTGCAGCTGCTaGAGGCTGAAGTCTGAGATG +
Preference number: 4 (lower is better)
Translates to: TSLENEWRQCVCVCVCVCSTCSC*RLKSEM
Trigger: CATCTCAGACTTCAGCCTCCAGCAGCTGCAGGTACT...ACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp AAAGCTTTGGCCCCAGAGATGGGAGGACATGGACTTGATTCATTTTGGCTTCGTCGTCCTCGATATCCATaGGGACATTGCTGTGGAGGT +
Preference number: 4 (lower is better)
Translates to: KALAPEMGGHGLDSFWLRRPRYP*GHCCGG
Trigger: ACCTCCACAGCAATGTCCTCATGGATATCGAGGACG...ACGAAGCCAAAATGAATCAAGTCCATGTCCTCCCATCTCTGGGGCCAAAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GCGCAACCGCCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATAGTCTGAGATGCAGGTaGGGGAGTTTCTGGAGAGAT +
Preference number: 4 (lower is better)
Translates to: AQPPSYFCSQFSSIDLRDSLRCR*GSFWRD
Trigger: ATCTCTCCAGAAACTCCCTCACCTGCATCTCAGACT...ATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGGCGGTTGCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp CCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATTCTGAGCAAGTGCCTGGCAGGAGGCTaGAGCTGTTGTTCCGCAGAT +
Preference number: 4 (lower is better)
Translates to: PATFVPSFLPLTCVILSKCLAGG*SCCSAD
Trigger: ATCTGCGGAACAACAGCTTCAGCCTCCTGCCAGGCA...CTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp TTCTTGTGTATAACCCAGATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGTGGTGGCCAGCGTGGTaGGGACGATGGCAGAGACCA +
Preference number: 4 (lower is better)
Translates to: FLCITQITQKPLRVGLTLWWPAW*GRWQRP
Trigger: TGGTCTCTGCCATCGTCCTCACCACGCTGGCCACCA...CAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTATCTGGGTTATACACAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp CCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATTCTGAGCAAGTGTTGGCTGAGCTTCTaGCGGCGGAGGAAGCAGATG +
Preference number: 4 (lower is better)
Translates to: PATFVPSFLPLTCVILSKCWLSF*RRRKQM
Trigger: CATCTGCTTCCTCCGCCGGCAGAAGCTCAGCCAACA...CTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTGGCAGGTGGCTTAACTaGTTCTCAGCAAGGTTAAGG +
Preference number: 4 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCGRWLN*FSARLR
Trigger: CCTTAACCTTGCTGAGAACCAGTTAAGCCACCTGCC...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp TTCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGCGTCCTCGATATCCATaGGGACATTGCTGTGGAGGT +
Preference number: 4 (lower is better)
Translates to: FFISREAESHYQQMRQSSRPRYP*GHCCGG
Trigger: ACCTCCACAGCAATGTCCTCATGGATATCGAGGACG...CGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGACGGCAGATTAGGTCCTaGGTAGCATCCACATCCACT +
Preference number: 4 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRRQIRS*VASTST
Trigger: AGTGGATGTGGATGCTACTCAGGACCTAATCTGCCG...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATGCCTGGTCGGCAGATTAGGTCCTaGGTAGCATCCACATCCACT +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVCPYYFSMPGRQIRS*VASTST
Trigger: AGTGGATGTGGATGCTACTCAGGACCTAATCTGCCG...ACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TTCTTGTGTATAACCCAGATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGGCCAGGTCAGGGAAGTaGAGCAGCTTGTTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: FLCITQITQKPLRVGLTLARSGK*SSLFSR
Trigger: CCGGGAGAACAAGCTGCTCCACTTCCCTGACCTGGC...CAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTATCTGGGTTATACACAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp TTTAAGATGAGGAGTGGATACAGAGAAAGGCAGTGGGCACATGGCCGCAGACAGTGGAGGAAGCTAATCTaGTTGTCACTTAAATCCAGG +
Preference number: 4 (lower is better)
Translates to: FKMRSGYRERQWAHGRRQWRKLI*LSLKSR
Trigger: CCTGGATTTAAGTGACAACCAGATTAGCTTCCTCCA...CTGTCTGCGGCCATGTGCCCACTGCCTTTCTCTGTATCCACTCCTCATCTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205956.2
CDS-3UTR CCA 90 bp CTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGAGGAAGCTAATCTaGTTGTCACTTAAATCCAGG +
Preference number: 4 (lower is better)
Translates to: LENEWRQCVCVCVCVCVCWRKLI*LSLKSR
Trigger: CCTGGATTTAAGTGACAACCAGATTAGCTTCCTCCA...ACACACACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
3UTR CAA 72 bp CCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTaGCGTGATTCTGAGCAAGGCCTGCACCTAACTTTC +
Preference number: 4 (lower is better)
Translates to: PSYFCSQFSSID*RDSEQGLHLTF
Trigger: GAAAGTTAGGTGCAGGCCTTGCTCAGAATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR GCA 90 bp TTCTTGTGTATAACCCAGATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGTCTAGTACCTGCAGCTaGTGGAGGCTGAAGTCTGAG +
Preference number: 4 (lower is better)
Translates to: FLCITQITQKPLRVGLTLSSTCS*WRLKSE
Trigger: CTCAGACTTCAGCCTCCAGCAGCTGCAGGTACTAGA...CAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTATCTGGGTTATACACAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp GCTCCACCGCTGGCATACCCCAGAAGGTGTGGCGTGCCAGGCGAGTaGGGCTGTTCTCCGCCAGTGAGAGCGTACGCAGCCTCGGGGTCT +
Preference number: 5 (lower is better)
Translates to: APPLAYPRRCGVPGE*GCSPPVRAYAASGS
Trigger: AGACCCCGAGGCTGCGTACGCTCTCACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCCACACCTTCTGGGGTATGCCAGCGGTGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp CCAGAAGGTGTGGCGTGCCAGGCGAGTGAGGCTGTTCTCCGCCAGTaGGAGCGTACGCAGCCTCGGGGTCTCACCCAACAGTCGCTCCAC +
Preference number: 5 (lower is better)
Translates to: PEGVACQASEAVLRQ*ERTQPRGLTQQSLH
Trigger: GTGGAGCGACTGTTGGGTGAGACCCCGAGGCTGCGTACGCTCTCACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCCACACCTTCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp CCCACTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCGCCGCCAGCCAGCCATaGCCACAGCAGCTGAGTGGA +
Preference number: 5 (lower is better)
Translates to: PTSSCTAGPQMQPGKEPAAASQP*PQQLSG
Trigger: TCCACTCAGCTGCTGTGGCAATGGCTGGCTGGCGGC...GGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAGTGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 90 bp TGGGCCGCCAGCCAGCCATTGCCACAGCAGCTGAGTGGATTTCCCTaGAAGTACAGCCGCCGGAGACTGGTCTCCAGGCCACCCATGGCA +
Preference number: 5 (lower is better)
Translates to: WAASQPLPQQLSGFP*KYSRRRLVSRPPMA
Trigger: TGCCATGGGTGGCCTGGAGACCAGTCTCCGGCGGCTGTACTTGCAGGGAAATCCACTCAGCTGCTGTGGCAATGGCTGGCTGGCGGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp GGGAAGTGGAGCAGCTTGTTCTCCCGGAGGTCGAGCCAGGCCAACTaGAACTGGGCCTGTGGTTCCGGGGCCGTCTGGAAGGCCTCAATG +
Preference number: 5 (lower is better)
Translates to: GKWSSLFSRRSSQAN*NWACGSGAVWKASM
Trigger: CATTGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTGGCTCGACCTCCGGGAGAACAAGCTGCTCCACTTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp TGGAGCAGCTTGTTCTCCCGGAGGTCGAGCCAGGCCAACTGGAACTaGGCCTGTGGTTCCGGGGCCGTCTGGAAGGCCTCAATGCTGTTG +
Preference number: 5 (lower is better)
Translates to: WSSLFSRRSSQANWN*ACGSGAVWKASMLL
Trigger: CAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTGGCTCGACCTCCGGGAGAACAAGCTGCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp GGAGACTGGTCTCCAGGCCACCCATGGCATTGCCTGGCAGGAGGCTaGAGCTGTTGTTCCGCAGATCTAGCACCTCCAGGGACACAGCCC +
Preference number: 5 (lower is better)
Translates to: GDWSPGHPWHCLAGG*SCCSADLAPPGTQP
Trigger: GGGCTGTGTCCCTGGAGGTGCTAGATCTGCGGAACAACAGCTTCAGCCTCCTGCCAGGCAATGCCATGGGTGGCCTGGAGACCAGTCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp CTCAGGGACAACTCCTCCTGGGAGCCAAAGCGGCAGATTAGGTCCTaGGTAGCATCCACATCCACTCTGCCCTGGTGCAGCTGGGCCGCC +
Preference number: 5 (lower is better)
Translates to: LRDNSSWEPKRQIRS*VASTSTLPWCSWAA
Trigger: GGCGGCCCAGCTGCACCAGGGCAGAGTGGATGTGGATGCTACTCAGGACCTAATCTGCCGCTTTGGCTCCCAGGAGGAGTTGTCCCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp ATGTCCAGTGAGAGCACCGAGGGGACCTGGAGCAGGCCAAGGCCGTaGCACAAGGCCTCCTTGTTCACCGTCCTACAGGGCACTTGCTCT +
Preference number: 5 (lower is better)
Translates to: MSSESTEGTWSRPRP*HKASLFTVLQGTCS
Trigger: AGAGCAAGTGCCCTGTAGGACGGTGAACAAGGAGGCCTTGTGCCACGGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCTCTCACTGGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS CCA 90 bp CTTGTTCTCCCGGAGGTCGAGCCAGGCCAACTGGAACTGGGCCTGTaGTTCCGGGGCCGTCTGGAAGGCCTCAATGCTGTTGCAGCTCAA +
Preference number: 5 (lower is better)
Translates to: LVLPEVEPGQLELGL*FRGRLEGLNAVAAQ
Trigger: TTGAGCTGCAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTGGCTCGACCTCCGGGAGAACAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp GCTCTGCAGTTGGTTCCCGGACAAGTAGAGAGCTTGGATGTCCAGTaGGAGCACCGAGGGGACCTGGAGCAGGCCAAGGCCGTGGCACAA +
Preference number: 5 (lower is better)
Translates to: ALQLVPGQVESLDVQ*EHRGDLEQAKAVAQ
Trigger: TTGTGCCACGGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCTCTCACTGGACATCCAAGCTCTCTACTTGTCCGGGAACCAACTGCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS CCA 90 bp CTGTGGAGGTCTAATTGCTCCACCGCTGGCATACCCCAGAAGGTGTaGCGTGCCAGGCGAGTGAGGCTGTTCTCCGCCAGTGAGAGCGTA +
Preference number: 5 (lower is better)
Translates to: LWRSNCSTAGIPQKV*RARRVRLFSASESV
Trigger: TACGCTCTCACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCCACACCTTCTGGGGTATGCCAGCGGTGGAGCAATTAGACCTCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp TCGAGCCAGGCCAACTGGAACTGGGCCTGTGGTTCCGGGGCCGTCTaGAAGGCCTCAATGCTGTTGCAGCTCAAGTCTAGTACCTGCAGC +
Preference number: 5 (lower is better)
Translates to: SSQANWNWACGSGAV*KASMLLQLKSSTCS
Trigger: GCTGCAGGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTGGCTCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp GCGGCAGTGTGCAGGACACCAAGTCCCTGGTCACTGAGTAACCTGAGTTGGACCAGGCCACCCATGGCATaGCCTGGCAGGAGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: AAVCRTPSPWSLSNLSWTRPPMA*PGRRLK
Trigger: CTTCAGCCTCCTGCCAGGCAATGCCATGGGTGGCCT...GGTCCAACTCAGGTTACTCAGTGACCAGGGACTTGGTGTCCTGCACACTGCCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp CTTCGAGCTGCACAGCTGGCCCACAGATGCAGCCTGGGAAGGAACCTGCCCACGAGGAGGAGGATGAGGTaGACATTCTTCAGCCCTCCC +
Preference number: 5 (lower is better)
Translates to: LRAAQLAHRCSLGRNLPTRRRMR*TFFSPP
Trigger: GGGAGGGCTGAAGAATGTCAACCTCATCCTCCTCCT...CGTGGGCAGGTTCCTTCCCAGGCTGCATCTGTGGGCCAGCTGTGCAGCTCGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp CCCGCCCTGAGCATTCCCATCGAGTTCCCTGCCATGTTAAGAACATaGAGGGTGGGGATCCCAGAGAAGTCCACACAGCCCGGGGGACCT +
Preference number: 5 (lower is better)
Translates to: PALSIPIEFPAMLRT*RVGIPEKSTQPGGP
Trigger: AGGTCCCCCGGGCTGTGTGGACTTCTCTGGGATCCCCACCCTTCATGTTCTTAACATGGCAGGGAACTCGATGGGAATGCTCAGGGCGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp TCCAGACCAGGATTGGTGGAGAGGTCCAGCTCTGTAAGTGGGGTGTaGAGGAAGCTGCCCGCCCTGAGCATTCCCATCGAGTTCCCTGCC +
Preference number: 5 (lower is better)
Translates to: SRPGLVERSSSVSGV*RKLPALSIPIEFPA
Trigger: GGCAGGGAACTCGATGGGAATGCTCAGGGCGGGCAGCTTCCTTCACACCCCACTTACAGAGCTGGACCTCTCCACCAATCCTGGTCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp CGAGCACAGGGATCTGATGCAGCAGGCTCTGTGACTGGGTCCAGGACTCCCCTTCAGTTTCTGCTGAGGTaGAGGAAGCGCAGGGAGGTC +
Preference number: 5 (lower is better)
Translates to: RAQGSDAAGSVTGSRTPLQFLLR*RKRREV
Trigger: GACCTCCCTGCGCTTCCTCAACCTCAGCAGAAACTG...AAGGGGAGTCCTGGACCCAGTCACAGAGCCTGCTGCATCAGATCCCTGTGCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp CAGATGCAGCCTGGGAAGGAACCTGCCCACGCGGCAGTGTGCAGGACACCAAGTAGGAGGCTGAAGCTGTaGTTCCGCAGATCTAGCACC +
Preference number: 5 (lower is better)
Translates to: QMQPGKEPAHAAVCRTPSRRLKL*FRRSST
Trigger: GGTGCTAGATCTGCGGAACAACAGCTTCAGCCTCCT...ACTTGGTGTCCTGCACACTGCCGCGTGGGCAGGTTCCTTCCCAGGCTGCATCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp GGCCCAGGCCTGCGTGGAAGCCTAGGTGATCACACTTTAAGCTGGTGCAGCCCCTCAGGCTTTGTATTGTaGGCTGAGCTTCTGCCGGCG +
Preference number: 5 (lower is better)
Translates to: GPGLRGSLGDHTLSWCSPSGFVL*AELLPA
Trigger: CGCCGGCAGAAGCTCAGCCAACAATACAAAGCCTGA...GGGGCTGCACCAGCTTAAAGTGTGATCACCTAGGCTTCCACGCAGGCCTGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp GGCCACATCCAGACCAGGATTGGTGGAGAGGTCCAGCTCTGTAAGTaGGGTGTGAAGGAAGCTGCCCGCCCTGAGCATTCCCATCGAGTT +
Preference number: 5 (lower is better)
Translates to: GHIQTRIGGEVQLCK*GVKEAARPEHSHRV
Trigger: AACTCGATGGGAATGCTCAGGGCGGGCAGCTTCCTTCACACCCCACTTACAGAGCTGGACCTCTCCACCAATCCTGGTCTGGATGTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp AGATCTAGCACCTCCAGGGACACAGCCCGCGTCCAAGCGGGCAGGTaGCTTAACTGGTTCTCAGCAAGGTTAAGGCGCTTGAGACGGAGA +
Preference number: 5 (lower is better)
Translates to: RSSTSRDTARVQAGR*LNWFSARLRRLRRR
Trigger: TCTCCGTCTCAAGCGCCTTAACCTTGCTGAGAACCAGTTAAGCCACCTGCCCGCTTGGACGCGGGCTGTGTCCCTGGAGGTGCTAGATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 90 bp GAGTCAGGTGGGGCAGGGCCTCAAAGGCACCGTCCTCGATATCCATaGGGACATTGCTGTGGAGGTCTAATTGCTCCACCGCTGGCATAC +
Preference number: 5 (lower is better)
Translates to: ESGGAGPQRHRPRYP*GHCCGGLIAPPLAY
Trigger: GTATGCCAGCGGTGGAGCAATTAGACCTCCACAGCAATGTCCTCATGGATATCGAGGACGGTGCCTTTGAGGCCCTGCCCCACCTGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 90 bp GACGGAGAAAGCAGGGCAAGTCCACTCTCAAGACAGTCAGCCCGTTaGCTTGAAGCTCCAGTACCTCTAAGGATGCCTCCAGGCCCACCA +
Preference number: 5 (lower is better)
Translates to: DGESRASPLSRQSAR*LEAPVPLRMPPGPP
Trigger: TGGTGGGCCTGGAGGCATCCTTAGAGGTACTGGAGCTTCAAGGCAACGGGCTGACTGTCTTGAGAGTGGACTTGCCCTGCTTTCTCCGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp GTCGAGCTGTCGGTTGGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCAGGAGGCTGAAGCTGTaGTTCCGCAGATCTAGCACC +
Preference number: 5 (lower is better)
Translates to: VELSVGILCAVNCPTSSCRRLKL*FRRSST
Trigger: GGTGCTAGATCTGCGGAACAACAGCTTCAGCCTCCT...GCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGACAGCTCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp CTGTCTGAGAGGGAGGGGGTATATGTAGCAAGTGTGCTTGGATCCTGGTTAGGGAGGCCACCCATGGCATaGCCTGGCAGGAGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: LSEREGVYVASVLGSWLGRPPMA*PGRRLK
Trigger: CTTCAGCCTCCTGCCAGGCAATGCCATGGGTGGCCT...CCCTAACCAGGATCCAAGCACACTTGCTACATATACCCCCTCCCTCTCAGACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 90 bp GGTGTGAAGGAAGCTGCCCGCCCTGAGCATTCCCATCGAGTTCCCTaGCATGTTAAGAACATGAAGGGTGGGGATCCCAGAGAAGTCCAC +
Preference number: 5 (lower is better)
Translates to: GVKEAARPEHSHRVP*HVKNMKGGDPREVH
Trigger: GTGGACTTCTCTGGGATCCCCACCCTTCATGTTCTTAACATGGCAGGGAACTCGATGGGAATGCTCAGGGCGGGCAGCTTCCTTCACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp AGGGAAGGTTCTAGGTCTGGATCTGCCTATTGGTCCTCGGAGCCTTTAACCTTCGCATTCCGGCTGGGGTaGGACAGTGGAGAGGCTGAC +
Preference number: 5 (lower is better)
Translates to: REGSRSGSAYWSSEPLTFAFRLG*DSGEAD
Trigger: GTCAGCCTCTCCACTGTCCAACCCCAGCCGGAATGC...GAAGGTTAAAGGCTCCGAGGACCAATAGGCAGATCCAGACCTAGAACCTTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp ACAAGCCTGGAGAATGAGTGGAGACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCGCCAGCCAGCCATaGCCACAGCAGCTGAGTGGA +
Preference number: 5 (lower is better)
Translates to: TSLENEWRQCVCVCVCVCAASQP*PQQLSG
Trigger: TCCACTCAGCTGCTGTGGCAATGGCTGGCTGGCGGC...ACACACACACACACACACACACACACACTGTCTCCACTCATTCTCCAGGCTTGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp TCGGTTGGCATCCTCTGTGCAGTAAACTGCCCCACTTCGAGCTGCACAGCTGGCAAGGCCTCAATGCTGTaGCAGCTCAAGTCTAGTACC +
Preference number: 5 (lower is better)
Translates to: SVGILCAVNCPTSSCTAGKASML*QLKSST
Trigger: GGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTT...GCCAGCTGTGCAGCTCGAAGTGGGGCAGTTTACTGCACAGAGGATGCCAACCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp GCGCAACCGCCCAGCTACTTTTGTTCCCAGTTTTCTTCCATTGACTTGCGTGATGCATTCCGGCTGGGGTaGGACAGTGGAGAGGCTGAC +
Preference number: 5 (lower is better)
Translates to: AQPPSYFCSQFSSIDLRDAFRLG*DSGEAD
Trigger: GTCAGCCTCTCCACTGTCCAACCCCAGCCGGAATGC...ATCACGCAAGTCAATGGAAGAAAACTGGGAACAAAAGTAGCTGGGCGGTTGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 90 bp GACCCTAGGACTTTGGTACCCAGTTCTAATGCTTCCAGCACATTGTaGCTCAAGTCCAAAAGCACCAGGCAGGGCAGGGAGTCCACTTGT +
Preference number: 5 (lower is better)
Translates to: DPRTLVPSSNASSTL*LKSKSTRQGRESTC
Trigger: ACAAGTGGACTCCCTGCCCTGCCTGGTGCTTTTGGACTTGAGCCACAATGTGCTGGAAGCATTAGAACTGGGTACCAAAGTCCTAGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp TTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGGGTGGACAGGATGCTCTGCAGTaGGTTCCCGGACAAGTAGAG +
Preference number: 5 (lower is better)
Translates to: FPERLKVIISRCDRARGGQDALQ*VPGQVE
Trigger: CTCTACTTGTCCGGGAACCAACTGCAGAGCATCCTG...TCCACCCCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCTATTATTTTTCCATGCCTGGTGGGAAGTGGAGCAGCTaGTTCTCCCGGAGGTCGAGC +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVCPYYFSMPGGKWSS*FSRRSS
Trigger: GCTCGACCTCCGGGAGAACAAGCTGCTCCACTTCCC...ACCAGGCATGGAAAAATAATAGGGACACACACACACACACACACACACACACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp TCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGGCAGTTTCTGCTGAGGTaGAGGAAGCGCAGGGAGGTC +
Preference number: 5 (lower is better)
Translates to: SSFPERLKVIISRCDRARQFLLR*RKRREV
Trigger: GACCTCCCTGCGCTTCCTCAACCTCAGCAGAAACTG...CCGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp CTCTTGCCTGAGGATAGGCATGTGTTTCATTTACTAGTACCCGGAGACGGGTGTAGGAGGAGGATGAGGTaGACATTCTTCAGCCCTCCC +
Preference number: 5 (lower is better)
Translates to: LLPEDRHVFHLLVPGDGCRRRMR*TFFSPP
Trigger: GGGAGGGCTGAAGAATGTCAACCTCATCCTCCTCCT...ACACCCGTCTCCGGGTACTAGTAAATGAAACACATGCCTATCCTCAGGCAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp TTCTTCATTTCCAGAGAGGCTGAAAGTCATTATCAGCAGATGCGACAGAGCTCGCAGGATGCTCTGCAGTaGGTTCCCGGACAAGTAGAG +
Preference number: 5 (lower is better)
Translates to: FFISREAESHYQQMRQSSQDALQ*VPGQVE
Trigger: CTCTACTTGTCCGGGAACCAACTGCAGAGCATCCTG...CGAGCTCTGTCGCATCTGCTGATAATGACTTTCAGCCTCTCTGGAAATGAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp AAGGAAGAATTCATACTCTTCTGCAAAGAAGGGACACTGAGGCAGAGAGGCAGATCAGGCTTTGTATTGTaGGCTGAGCTTCTGCCGGCG +
Preference number: 5 (lower is better)
Translates to: KEEFILFCKEGTLRQRGRSGFVL*AELLPA
Trigger: CGCCGGCAGAAGCTCAGCCAACAATACAAAGCCTGA...TCTGCCTCTCTGCCTCAGTGTCCCTTCTTTGCAGAAGAGTATGAATTCTTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS-3UTR CAA 90 bp ATAACACAGAAACCTCTGAGAGTTGGCTTGACTTTGCCTCTGCAGCTGCTAAGCAAGGCCTCAATGCTGTaGCAGCTCAAGTCTAGTACC +
Preference number: 5 (lower is better)
Translates to: ITQKPLRVGLTLPLQLLSKASML*QLKSST
Trigger: GGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTT...GCTTAGCAGCTGCAGAGGCAAAGTCAAGCCAACTCTCAGAGGTTTCTGTGTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp GAGAGCACCGAGGGGACCTGGAGCAGGCCAAGGCCGTaGCACAAGGCCTCCTTGTTCACCGTCCTACAGGGC +
Preference number: 6 (lower is better)
Translates to: ESTEGTWSRPRP*HKASLFTVLQG
Trigger: GCCCTGTAGGACGGTGAACAAGGAGGCCTTGTGCCACGGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCTCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS TCA 72 bp CTGGCATACCCCAGAAGGTGTGGCGTGCCAGGCGAGTaGGGCTGTTCTCCGCCAGTGAGAGCGTACGCAGCC +
Preference number: 6 (lower is better)
Translates to: LAYPRRCGVPGE*GCSPPVRAYAA
Trigger: GGCTGCGTACGCTCTCACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCCACACCTTCTGGGGTATGCCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp TTGTTCTCCCGGAGGTCGAGCCAGGCCAACTGGAACTaGGCCTGTGGTTCCGGGGCCGTCTGGAAGGCCTCA +
Preference number: 6 (lower is better)
Translates to: LFSRRSSQANWN*ACGSGAVWKAS
Trigger: TGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTGGCTCGACCTCCGGGAGAACAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp AGCAGCTTGTTCTCCCGGAGGTCGAGCCAGGCCAACTaGAACTGGGCCTGTGGTTCCGGGGCCGTCTGGAAG +
Preference number: 6 (lower is better)
Translates to: SSLFSRRSSQAN*NWACGSGAVWK
Trigger: CTTCCAGACGGCCCCGGAACCACAGGCCCAGTTCCAGTTGGCCTGGCTCGACCTCCGGGAGAACAAGCTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp AGAGCTTGGATGTCCAGTGAGAGCACCGAGGGGACCTaGAGCAGGCCAAGGCCGTGGCACAAGGCCTCCTTG +
Preference number: 6 (lower is better)
Translates to: RAWMSSESTEGT*SRPRPWHKASL
Trigger: CAAGGAGGCCTTGTGCCACGGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCTCTCACTGGACATCCAAGCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS CAA 72 bp ACCTGGAGCAGGCCAAGGCCGTGGCACAAGGCCTCCTaGTTCACCGTCCTACAGGGCACTTGCTCTCGACGC +
Preference number: 6 (lower is better)
Translates to: TWSRPRPWHKAS*FTVLQGTCSRR
Trigger: GCGTCGAGAGCAAGTGCCCTGTAGGACGGTGAACAAGGAGGCCTTGTGCCACGGCCTTGGCCTGCTCCAGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS CAA 72 bp CTCGGGAACACGGCCAGGTCAGGGAAGTGGAGCAGCTaGTTCTCCCGGAGGTCGAGCCAGGCCAACTGGAAC +
Preference number: 6 (lower is better)
Translates to: LGNTARSGKWSS*FSRRSSQANWN
Trigger: GTTCCAGTTGGCCTGGCTCGACCTCCGGGAGAACAAGCTGCTCCACTTCCCTGACCTGGCCGTGTTCCCGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp AGCCGCCGGAGACTGGTCTCCAGGCCACCCATGGCATaGCCTGGCAGGAGGCTGAAGCTGTTGTTCCGCAGA +
Preference number: 6 (lower is better)
Translates to: SRRRLVSRPPMA*PGRRLKLLFRR
Trigger: TCTGCGGAACAACAGCTTCAGCCTCCTGCCAGGCAATGCCATGGGTGGCCTGGAGACCAGTCTCCGGCGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp AAGGCCGTGGCACAAGGCCTCCTTGTTCACCGTCCTACAGGGCACTaGCTCTCGACGCTGAGAGATAGCCAGGCCCAGGGTCAGCATGGC +
Preference number: 6 (lower is better)
Translates to: KAVAQGLLVHRPTGH*LSTLRDSQAQGQHG
Trigger: GCCATGCTGACCCTGGGCCTGGCTATCTCTCAGCGTCGAGAGCAAGTGCCCTGTAGGACGGTGAACAAGGAGGCCTTGTGCCACGGCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS CAA 90 bp AGGTCCAGGGAGACCAAAAGGGGCAGGCGGCCCAGACCACCACTGTaGAGAGCCATGCCTGTGGCAAGCCGATTGTGGGCCAGGTTAAGG +
Preference number: 6 (lower is better)
Translates to: RSRETKRGRRPRPPL*RAMPVASRLWARLR
Trigger: CCTTAACCTGGCCCACAATCGGCTTGCCACAGGCATGGCTCTCAACAGTGGTGGTCTGGGCCGCCTGCCCCTTTTGGTCTCCCTGGACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp GTCTCCAGGCCACCCATGGCATTGCCTGGCAGGAGGCTGAAGCTGTaGTTCCGCAGATCTAGCACCTCCAGGGACACAGCCCGCGTCCAA +
Preference number: 6 (lower is better)
Translates to: VSRPPMALPGRRLKL*FRRSSTSRDTARVQ
Trigger: TTGGACGCGGGCTGTGTCCCTGGAGGTGCTAGATCTGCGGAACAACAGCTTCAGCCTCCTGCCAGGCAATGCCATGGGTGGCCTGGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp AGCCTCGGGGTCTCACCCAACAGTCGCTCCACCAGATaGCCATGCAGGCTGTTCCCAGACAGGTCCAGGGAG +
Preference number: 6 (lower is better)
Translates to: SLGVSPNSRSTR*PCRLFPDRSRE
Trigger: CTCCCTGGACCTGTCTGGGAACAGCCTGCATGGCAATCTGGTGGAGCGACTGTTGGGTGAGACCCCGAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp AGCGTACGCAGCCTCGGGGTCTCACCCAACAGTCGCTCCACCAGATaGCCATGCAGGCTGTTCCCAGACAGGTCCAGGGAGACCAAAAGG +
Preference number: 6 (lower is better)
Translates to: SVRSLGVSPNSRSTR*PCRLFPDRSRETKR
Trigger: CCTTTTGGTCTCCCTGGACCTGTCTGGGAACAGCCTGCATGGCAATCTGGTGGAGCGACTGTTGGGTGAGACCCCGAGGCTGCGTACGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp TGCAAGTACAGCCGCCGGAGACTGGTCTCCAGGCCACCCATGGCATaGCCTGGCAGGAGGCTGAAGCTGTTGTTCCGCAGATCTAGCACC +
Preference number: 6 (lower is better)
Translates to: CKYSRRRLVSRPPMA*PGRRLKLLFRRSST
Trigger: GGTGCTAGATCTGCGGAACAACAGCTTCAGCCTCCTGCCAGGCAATGCCATGGGTGGCCTGGAGACCAGTCTCCGGCGGCTGTACTTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 72 bp TTGGTTCCCGGACAAGTAGAGAGCTTGGATGTCCAGTaGGAGCACCGAGGGGACCTGGAGCAGGCCAAGGCC +
Preference number: 6 (lower is better)
Translates to: LVPGQVESLDVQ*EHRGDLEQAKA
Trigger: GGCCTTGGCCTGCTCCAGGTCCCCTCGGTGCTCTCACTGGACATCCAAGCTCTCTACTTGTCCGGGAACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS GCA 72 bp GTGGTTCCGGGGCCGTCTGGAAGGCCTCAATGCTGTTaGAGCTCAAGTCTAGTACCTGCAGCTGCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: VVPGPSGRPQCC*SSSLVPAAAGG
Trigger: GCCTCCAGCAGCTGCAGGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 72 bp GGGCCTGTGGTTCCGGGGCCGTCTGGAAGGCCTCAATaGTGTTGCAGCTCAAGTCTAGTACCTGCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: GPVVPGPSGRPQ*CCSSSLVPAAA
Trigger: AGCAGCTGCAGGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 72 bp AGCCAGCCATTGCCACAGCAGCTGAGTGGATTTCCCTaGAAGTACAGCCGCCGGAGACTGGTCTCCAGGCCA +
Preference number: 6 (lower is better)
Translates to: SQPLPQQLSGFP*KYSRRRLVSRP
Trigger: TGGCCTGGAGACCAGTCTCCGGCGGCTGTACTTGCAGGGAAATCCACTCAGCTGCTGTGGCAATGGCTGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp TCTAATTGCTCCACCGCTGGCATACCCCAGAAGGTGTaGCGTGCCAGGCGAGTGAGGCTGTTCTCCGCCAGT +
Preference number: 6 (lower is better)
Translates to: SNCSTAGIPQKV*RARRVRLFSAS
Trigger: ACTGGCGGAGAACAGCCTCACTCGCCTGGCACGCCACACCTTCTGGGGTATGCCAGCGGTGGAGCAATTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp GCACAAGGCCTCCTTGTTCACCGTCCTACAGGGCACTaGCTCTCGACGCTGAGAGATAGCCAGGCCCAGGGT +
Preference number: 6 (lower is better)
Translates to: AQGLLVHRPTGH*LSTLRDSQAQG
Trigger: ACCCTGGGCCTGGCTATCTCTCAGCGTCGAGAGCAAGTGCCCTGTAGGACGGTGAACAAGGAGGCCTTGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000165205.2
ENSMUST00000205937.2
ENSMUST00000205956.2
CDS TCA 72 bp GGATTGGTGGAGAGGTCCAGCTCTGTAAGTGGGGTGTaGAGGAAGCTGCCCGCCCTGAGCATTCCCATCGAG +
Preference number: 6 (lower is better)
Translates to: GLVERSSSVSGV*RKLPALSIPIE
Trigger: CTCGATGGGAATGCTCAGGGCGGGCAGCTTCCTTCACACCCCACTTACAGAGCTGGACCTCTCCACCAATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 72 bp GGGGTCTCACCCAACAGTCGCTCCACCAGATTGCCATaGAGGCTGTTCCCAGACAGGTCCAGGGAGACCAAA +
Preference number: 6 (lower is better)
Translates to: GVSPNSRSTRLP*RLFPDRSRETK
Trigger: TTTGGTCTCCCTGGACCTGTCTGGGAACAGCCTGCATGGCAATCTGGTGGAGCGACTGTTGGGTGAGACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp CAGACCAGGATTGGTGGAGAGGTCCAGCTCTGTAAGTaGGGTGTGAAGGAAGCTGCCCGCCCTGAGCATTCC +
Preference number: 6 (lower is better)
Translates to: QTRIGGEVQLCK*GVKEAARPEHS
Trigger: GGAATGCTCAGGGCGGGCAGCTTCCTTCACACCCCACTTACAGAGCTGGACCTCTCCACCAATCCTGGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp TGTGGTTCCGGGGCCGTCTGGAAGGCCTCAATGCTGTaGCAGCTCAAGTCTAGTACCTGCAGCTGCTGGAGG +
Preference number: 6 (lower is better)
Translates to: CGSGAVWKASML*QLKSSTCSCWR
Trigger: CCTCCAGCAGCTGCAGGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp AACTGGGCCTGTGGTTCCGGGGCCGTCTGGAAGGCCTCAATGCTGTaGCAGCTCAAGTCTAGTACCTGCAGCTGCTGGAGGCTGAAGTCT +
Preference number: 6 (lower is better)
Translates to: NWACGSGAVWKASML*QLKSSTCSCWRLKS
Trigger: AGACTTCAGCCTCCAGCAGCTGCAGGTACTAGACTTGAGCTGCAACAGCATTGAGGCCTTCCAGACGGCCCCGGAACCACAGGCCCAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 72 bp GGGGCAGGGCCTCAAAGGCACCGTCCTCGATATCCATaGGGACATTGCTGTGGAGGTCTAATTGCTCCACCG +
Preference number: 6 (lower is better)
Translates to: GAGPQRHRPRYP*GHCCGGLIAPP
Trigger: CGGTGGAGCAATTAGACCTCCACAGCAATGTCCTCATGGATATCGAGGACGGTGCCTTTGAGGCCCTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 72 bp GGCAAGTCCACTCTCAAGACAGTCAGCCCGTTGCCTTaGAGCTCCAGTACCTCTAAGGATGCCTCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: GKSTLKTVSPLP*SSSTSKDASRP
Trigger: GGGCCTGGAGGCATCCTTAGAGGTACTGGAGCTTCAAGGCAACGGGCTGACTGTCTTGAGAGTGGACTTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 72 bp AACTCCTCCTGGGAGCCAAAGCGGCAGATTAGGTCCTaGGTAGCATCCACATCCACTCTGCCCTGGTGCAGC +
Preference number: 6 (lower is better)
Translates to: NSSWEPKRQIRS*VASTSTLPWCS
Trigger: GCTGCACCAGGGCAGAGTGGATGTGGATGCTACTCAGGACCTAATCTGCCGCTTTGGCTCCCAGGAGGAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp CAAGTCCAAAAGCACCAGGCAGGGCAGGGAGTCCACTaGTCGAGCCTCAAAGGATCGCAGGCAGTTTCTGCT +
Preference number: 6 (lower is better)
Translates to: QVQKHQAGQGVH*SSLKGSQAVSA
Trigger: AGCAGAAACTGCCTGCGATCCTTTGAGGCTCGACAAGTGGACTCCCTGCCCTGCCTGGTGCTTTTGGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp TCCACTTGTCGAGCCTCAAAGGATCGCAGGCAGTTTCTGCTGAGGTaGAGGAAGCGCAGGGAGGTCAGGTGTTCAAGAAAGCTAGCAGGG +
Preference number: 6 (lower is better)
Translates to: STCRASKDRRQFLLR*RKRREVRCSRKLAG
Trigger: CCCTGCTAGCTTTCTTGAACACCTGACCTCCCTGCGCTTCCTCAACCTCAGCAGAAACTGCCTGCGATCCTTTGAGGCTCGACAAGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp CCTCTGCAGGCTGGCCAGGCTGGCAAAGGTATAGGGTaGAAGTTCTTGCAAGGCATTGTCCTGCAGAAGCAA +
Preference number: 6 (lower is better)
Translates to: PLQAGQAGKGIG*KFLQGIVLQKQ
Trigger: TTGCTTCTGCAGGACAATGCCTTGCAAGAACTTCCACCCTATACCTTTGCCAGCCTGGCCAGCCTGCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp TCCCCTGTAGGTTTAGCCTCTGCAGGCTGGCCAGGCTaGCAAAGGTATAGGGTGGAAGTTCTTGCAAGGCAT +
Preference number: 6 (lower is better)
Translates to: SPVGLASAGWPG*QRYRVEVLARH
Trigger: ATGCCTTGCAAGAACTTCCACCCTATACCTTTGCCAGCCTGGCCAGCCTGCAGAGGCTAAACCTACAGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp GCTGGCCAGGCTGGCAAAGGTATAGGGTGGAAGTTCTaGCAAGGCATTGTCCTGCAGAAGCAACGTCTGCAG +
Preference number: 6 (lower is better)
Translates to: AGQAGKGIGWKF*QGIVLQKQRLQ
Trigger: CTGCAGACGTTGCTTCTGCAGGACAATGCCTTGCAAGAACTTCCACCCTATACCTTTGCCAGCCTGGCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 90 bp AGGGACCCTAGGACTTTGGTACCCAGTTCTAATGCTTCCAGCACATaGTGGCTCAAGTCCAAAAGCACCAGGCAGGGCAGGGAGTCCACT +
Preference number: 6 (lower is better)
Translates to: RDPRTLVPSSNASST*WLKSKSTRQGREST
Trigger: AGTGGACTCCCTGCCCTGCCTGGTGCTTTTGGACTTGAGCCACAATGTGCTGGAAGCATTAGAACTGGGTACCAAAGTCCTAGGGTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS TCA 72 bp AGCATTCCCATCGAGTTCCCTGCCATGTTAAGAACATaGAGGGTGGGGATCCCAGAGAAGTCCACACAGCCC +
Preference number: 6 (lower is better)
Translates to: SIPIEFPAMLRT*RVGIPEKSTQP
Trigger: GGGCTGTGTGGACTTCTCTGGGATCCCCACCCTTCATGTTCTTAACATGGCAGGGAACTCGATGGGAATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS GCA 72 bp TCAATGCTGTTGCAGCTCAAGTCTAGTACCTGCAGCTaGTGGAGGCTGAAGTCTGAGATGCAGGTGAGGGAG +
Preference number: 6 (lower is better)
Translates to: SMLLQLKSSTCS*WRLKSEMQVRE
Trigger: CTCCCTCACCTGCATCTCAGACTTCAGCCTCCAGCAGCTGCAGGTACTAGACTTGAGCTGCAACAGCATTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp CCTGCAGAAGCAACGTCTGCAGGGACCCTAGGACTTTaGTACCCAGTTCTAATGCTTCCAGCACATTGTGGC +
Preference number: 6 (lower is better)
Translates to: PAEATSAGTLGL*YPVLMLPAHCG
Trigger: GCCACAATGTGCTGGAAGCATTAGAACTGGGTACCAAAGTCCTAGGGTCCCTGCAGACGTTGCTTCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp GCCTCAAAGGCACCGTCCTCGATATCCATGAGGACATaGCTGTGGAGGTCTAATTGCTCCACCGCTGGCATA +
Preference number: 6 (lower is better)
Translates to: ASKAPSSISMRT*LWRSNCSTAGI
Trigger: TATGCCAGCGGTGGAGCAATTAGACCTCCACAGCAATGTCCTCATGGATATCGAGGACGGTGCCTTTGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CCA 72 bp ACTTTGGTACCCAGTTCTAATGCTTCCAGCACATTGTaGCTCAAGTCCAAAAGCACCAGGCAGGGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: TLVPSSNASSTL*LKSKSTRQGRE
Trigger: CTCCCTGCCCTGCCTGGTGCTTTTGGACTTGAGCCACAATGTGCTGGAAGCATTAGAACTGGGTACCAAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2
CDS CAA 72 bp AGGTGGCTTAACTGGTTCTCAGCAAGGTTAAGGCGCTaGAGACGGAGAAAGCAGGGCAAGTCCACTCTCAAG +
Preference number: 6 (lower is better)
Translates to: RWLNWFSARLRR*RRRKQGKSTLK
Trigger: CTTGAGAGTGGACTTGCCCTGCTTTCTCCGTCTCAAGCGCCTTAACCTTGCTGAGAACCAGTTAAGCCACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000165205.2
ENSMUST00000205956.2