Pregenerated sensors for LRRC23 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030125Ensembl transcript IDs: ENSMUST00000032218.10, ENSMUST00000112475.9, ENSMUST00000128697.8
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTTaGGGCCAGTGTCCATGGCTTCCTTTACTGTCCCTGCAGGCTGGA | + |
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Preference number: 1 (lower is better) Translates to: GAMNVVVPHWSLISS*GQCPWLPLLSLQAG Trigger: TCCAGCCTGCAGGGACAGTAAAGGAAGCCATGGACACTGGCCCCAAGAACTGATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR CCA 90 bp | GGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGGAGCCTTaGGATGTGATGGATTTCCAGTCTGGGACAAAAAGGAGCATCTCC | + |
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Preference number: 1 (lower is better) Translates to: GPQNKPHRQMTAKEP*DVMDFQSGTKRSIS Trigger: GGAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR-3UTR TCA 90 bp | TTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGAAGCCACACAGACAGATaGCTGCCAAGGAGCCTTGGG | + |
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Preference number: 2 (lower is better) Translates to: FETSTGPSQLTSSAPLYRSHTDR*LPRSLG Trigger: CCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCT...TCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR CAA 90 bp | AGGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGGAGCCTaGGGATGTGATGGATTTCCAGTCTGGGACAAAAAGGAGCATCTC | + |
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Preference number: 2 (lower is better) Translates to: RPTEQATQTDDCQGA*GCDGFPVWDKKEHL Trigger: GAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR-3UTR TCA 90 bp | TTTTTATTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCAGCCACACAGACAGATaGCTGCCAAGGAGCCTTGGG | + |
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Preference number: 2 (lower is better) Translates to: FLFETSTGPSQLTSSAPLSHTDR*LPRSLG Trigger: CCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCT...GAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAATAAAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR-3UTR TCA 90 bp | TTTTTATTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCATCTCCCACTTCCTGTaGCGGGGCTATGAATGTGGT | + |
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Preference number: 2 (lower is better) Translates to: FLFETSTGPSQLTSSAPLISHFL*RGYECG Trigger: ACCACATTCATAGCCCCGTCACAGGAAGTGGGAGAT...GAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAATAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR-3UTR GCA 90 bp | TTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGAACACAGACAGATGACTaGCAAGGAGCCTTGGGATGT | + |
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Preference number: 2 (lower is better) Translates to: FETSTGPSQLTSSAPLYRTQTDD*QGALGC Trigger: ACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGT...TCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR CCA 72 bp | AATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTTaGGGCCAGTGTCCATGGCTTCCTTTACTGTCCCTG | + |
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Preference number: 3 (lower is better) Translates to: NVVVPHWSLISS*GQCPWLPLLSL Trigger: CAGGGACAGTAAAGGAAGCCATGGACACTGGCCCCAAGAACTGATAAGACTCCAGTGGGGGACCACCACATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR GCA 72 bp | TTCAGGCCCACAGAACAAGCCACACAGACAGATGACTaGCAAGGAGCCTTGGGATGTGATGGATTTCCAGTC | + |
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Preference number: 3 (lower is better) Translates to: FRPTEQATQTDD*QGALGCDGFPV Trigger: GACTGGAAATCCATCACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR CCA 72 bp | TGCCAAGGAGCCTTGGGATGTGATGGATTTCCAGTCTaGGACAAAAAGGAGCATCTCCCACTTCCTGTGACG | + |
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Preference number: 3 (lower is better) Translates to: CQGALGCDGFPV*DKKEHLPLPVT Trigger: CGTCACAGGAAGTGGGAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAAGGCTCCTTGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR CCA 72 bp | AACAAGCCACACAGACAGATGACTGCCAAGGAGCCTTaGGATGTGATGGATTTCCAGTCTGGGACAAAAAGG | + |
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Preference number: 3 (lower is better) Translates to: NKPHRQMTAKEP*DVMDFQSGTKR Trigger: CCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR GCA 90 bp | TCAGGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGGAGCCTTGGGATTCCAGGCGCTCAAGGTaGGCCATCTGCACCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: SGPQNKPHRQMTAKEPWDSRRSR*AICTRA Trigger: GGCCCTGGTGCAGATGGCGCACCTTGAGCGCCTGGA...ATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR GCA 90 bp | GTGCTTAGGAGTTCAGGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGTCAAGGTGCGCCATCTaGACCAGGGCCTCCTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: VLRSSGPQNKPHRQMTAKSRCAI*TRASWR Trigger: CCGCCAGGAGGCCCTGGTGCAGATGGCGCACCTTGA...CTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCTGAACTCCTAAGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR GCA 90 bp | TCCTGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTTCCAGGCGCTCAAGGTaGGCCATCTGCACCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: SCDGAMNVVVPHWSLISSSRRSR*AICTRA Trigger: GGCCCTGGTGCAGATGGCGCACCTTGAGCGCCTGGA...AGAACTGATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACAGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR TCA 90 bp | CAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACTCATCATGGCCTCCGTaGTGGGGGTGGGCAGCCATT | + |
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Preference number: 4 (lower is better) Translates to: QLAHHSSLPQRLSIDNTYSSWPP*WGWAAI Trigger: AATGGCTGCCCACCCCCATCACGGAGGCCATGATGA...GTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR TCA 90 bp | GGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACTAGCATCATCATGGCCTCCGTaGTGGGGGTGGGCAGCCATT | + |
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Preference number: 4 (lower is better) Translates to: GPSQLTSSAPLYRQHLLASSWPP*WGWAAI Trigger: AATGGCTGCCCACCCCCATCACGGAGGCCATGATGA...TGCTAGTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR GCA 90 bp | TTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGATCAAGGTGCGCCATCTaGACCAGGGCCTCCTGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: FETSTGPSQLTSSAPLYRSRCAI*TRASWR Trigger: CCGCCAGGAGGCCCTGGTGCAGATGGCGCACCTTGA...TCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | GTGCTTAGGAGTTCAGGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGGCAGGTCCCGCAGTTTaGCCAGCTCTGCCAGATCAC | + |
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Preference number: 4 (lower is better) Translates to: VLRSSGPQNKPHRQMTAKAGPAV*PALPDH Trigger: GTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGC...CTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCTGAACTCCTAAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | CAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACGCAGGTCCCGCAGTTTaGCCAGCTCTGCCAGATCAC | + |
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Preference number: 4 (lower is better) Translates to: QLAHHSSLPQRLSIDNTYAGPAV*PALPDH Trigger: GTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGC...GTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR TCA 90 bp | GGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACTAGCAGGATGCGGTTCCCTTTaGGATCCAGGCTTCCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: GPSQLTSSAPLYRQHLLAGCGSL*DPGFPD Trigger: GTCTGGGAAGCCTGGATCTCAAAGGGAACCGCATCC...TGCTAGTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR GCA 90 bp | CCCACTTCCTGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCCGTGAGCCAGTCCACTaGCAATCTTGCAGAGTAATG | + |
|
Preference number: 4 (lower is better) Translates to: PTSCDGAMNVVVPHWSLIREPVH*QSCRVM Trigger: CATTACTCTGCAAGATTGGCAGTGGACTGGCTCACG...GATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACAGGAAGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | GTGCTTAGGAGTTCAGGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGAGACCAGTCACCTGGTaGATGCGGTTCCCTTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: VLRSSGPQNKPHRQMTAKRPVTW*MRFPLR Trigger: TCTCAAAGGGAACCGCATCCACCAGGTGACTGGTCT...CTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCTGAACTCCTAAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | GGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACTAGCATTTGTGGATTCCAGCTaGTTCCCTCGAAGCTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GPSQLTSSAPLYRQHLLAFVDSS*FPRSSR Trigger: CCTGGAGCTTCGAGGGAACCAGCTGGAATCCACAAA...TGCTAGTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | CAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACCTCGCAGATGCAGGGTaGTCAAGTTGCTCAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QLAHHSSLPQRLSIDNTYLADAG*SSCSGS Trigger: AGAACCTGAGCAACTTGACCACCCTGCATCTGCGAG...GTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | CACAGACAGATGACTGCCAAGGAGCCTTGGGATGTGATGGATTTCCAGTCTGGGGGTTGTAGGAAAAGCTaGCGATCTGCAGGTAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: HRQMTAKEPWDVMDFQSGGCRKS*RSAGRE Trigger: TTCCCTACCTGCAGATCGCCAGCTTTTCCTACAACC...CCCAGACTGGAAATCCATCACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | TGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTTGGGGTTGTAGGAAAAGCTaGCGATCTGCAGGTAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: CDGAMNVVVPHWSLISSWGCRKS*RSAGRE Trigger: TTCCCTACCTGCAGATCGCCAGCTTTTCCTACAACC...CCAAGAACTGATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR TCA 90 bp | TCAGGCCCACAGAACAAGCCACACAGACAGATGACTGCCAAGGAGCCTTGGGATTGCCTTCAGTGTCTATaGTCTGGTTGTAGGAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SGPQNKPHRQMTAKEPWDCLQCL*SGCRKS Trigger: GCTTTTCCTACAACCAGATCATAGACACTGAAGGCA...ATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTTCTGTGGGCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | TTGGGATGTGATGGATTTCCAGTCTGGGACAAAAAGGAGCATCTCCCACTTCCTAGACCAGTCACCTGGTaGATGCGGTTCCCTTTGAGA | + |
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Preference number: 4 (lower is better) Translates to: LGCDGFPVWDKKEHLPLPRPVTW*MRFPLR Trigger: TCTCAAAGGGAACCGCATCCACCAGGTGACTGGTCT...AGGAAGTGGGAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | TTGGGATGTGATGGATTTCCAGTCTGGGACAAAAAGGAGCATCTCCCACTTCCTCTCGCAGATGCAGGGTaGTCAAGTTGCTCAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LGCDGFPVWDKKEHLPLPLADAG*SSCSGS Trigger: AGAACCTGAGCAACTTGACCACCCTGCATCTGCGAG...AGGAAGTGGGAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| 3UTR CAA 72 bp | GAACAAGCCACACAGACAGATGACTGCCAAGGAGCCTaGGGATGTGATGGATTTCCAGTCTGGGACAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: EQATQTDDCQGA*GCDGFPVWDKK Trigger: CTTTTTGTCCCAGACTGGAAATCCATCACATCCCAAGGCTCCTTGGCAGTCATCTGTCTGTGTGGCTTGTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | CAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACAGCGACTTCATTTCCTaGGAGAAGCCATTCAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: QLAHHSSLPQRLSIDNTYSDFIS*EKPFKV Trigger: AACTTTGAATGGCTTCTCCCAGGAAATGAAGTCGCT...GTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR TCA 90 bp | TTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGATGCCTTCAGTGTCTATaGTCTGGTTGTAGGAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: FETSTGPSQLTSSAPLYRCLQCL*SGCRKS Trigger: GCTTTTCCTACAACCAGATCATAGACACTGAAGGCA...TCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CCA 90 bp | TTTTTATTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCAGCGACTTCATTTCCTaGGAGAAGCCATTCAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: FLFETSTGPSQLTSSAPLSDFIS*EKPFKV Trigger: AACTTTGAATGGCTTCTCCCAGGAAATGAAGTCGCT...GAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAATAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 90 bp | CATCTGCACCAGGGCCTCCTGGCGGTAGTCGGTCTCATCCGCACATaGGTTGTCCAGCAGCACCAGGGCTCGAAGTTTGGGCAGGTCCCG | + |
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Preference number: 5 (lower is better) Translates to: HLHQGLLAVVGLIRT*VVQQHQGSKFGQVP Trigger: CGGGACCTGCCCAAACTTCGAGCCCTGGTGCTGCTGGACAACCCATGTGCGGATGAGACCGACTACCGCCAGGAGGCCCTGGTGCAGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 90 bp | AGGGTGTGCAGGCTCGACAGTCTCTCGGGGTCCAGACCAGTCACCTaGTGGATGCGGTTCCCTTTGAGATCCAGGCTTCCCAGACGGGGG | + |
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Preference number: 5 (lower is better) Translates to: RVCRLDSLSGSRPVT*WMRFPLRSRLPRRG Trigger: CCCCCGTCTGGGAAGCCTGGATCTCAAAGGGAACCGCATCCACCAGGTGACTGGTCTGGACCCCGAGAGACTGTCGAGCCTGCACACCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | GCATCTCCCACTTCCTGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTACCAGGGCTCGAAGTTaGGGCAGGTCCCGCAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: ASPTSCDGAMNVVVPHWSTRARS*GRSRSL Trigger: CAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGT...ACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACAGGAAGTGGGAGATGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | TCCTGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTACCAGGGCTCGAAGTTaGGGCAGGTCCCGCAGTTTG | + |
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Preference number: 5 (lower is better) Translates to: SCDGAMNVVVPHWSLISSTRARS*GRSRSL Trigger: CAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGT...AGAACTGATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 90 bp | CACCAGGGCTCGAAGTTTGGGCAGGTCCCGCAGTTTGGCCAGCTCTaGCAGATCACTAATCATATTGCTCCTCAAGTTGAGGTACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: HQGSKFGQVPQFGQL*QITNHIAPQVEVLQ Trigger: CTGCAGTACCTCAACTTGAGGAGCAATATGATTAGTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 90 bp | TTGATCCTGTTCCTCCTTCAGCCTCTGACGGATCTCCTCGGCCTCTaGCCGGTCATCATCCTCATAGAATTCTTTGTCCAGGCGCTCAAG | + |
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Preference number: 5 (lower is better) Translates to: LILFLLQPLTDLLGL*PVIILIEFFVQALK Trigger: CTTGAGCGCCTGGACAAAGAATTCTATGAGGATGATGACCGGGCAGAGGCCGAGGAGATCCGTCAGAGGCTGAAGGAGGAACAGGATCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS TCA 90 bp | CAATCTTGCAGAGTAATGAGAGCCCTTCCTTCATCATGGCCTCCGTaGTGGGGGTGGGCAGCCATTCCTCAGAGGCTTCTTCTGTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: QSCRVMRALPSSWPP*WGWAAIPQRLLLSL Trigger: AAGAGACAGAAGAAGCCTCTGAGGAATGGCTGCCCACCCCCATCACGGAGGCCATGATGAAGGAAGGGCTCTCATTACTCTGCAAGATTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 ENSMUST00000128697.8 |
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| CDS TCA 90 bp | GATCCAGGCTTCCCAGACGGGGGTGAAAGATGCCTTCAGTGTCTATaGTCTGGTTGTAGGAAAAGCTGGCGATCTGCAGGTAGGGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: DPGFPDGGERCLQCL*SGCRKSWRSAGREV Trigger: AACTTCCCTACCTGCAGATCGCCAGCTTTTCCTACAACCAGATCATAGACACTGAAGGCATCTTTCACCCCCGTCTGGGAAGCCTGGATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 90 bp | TCCTGGGAGAAGCCATTCAAAGTTTCAATCTGGTTGTCTCGCAGATaGAGGGTGGTCAAGTTGCTCAGGTTCTCCAGGCCCTCTACCTTC | + |
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Preference number: 5 (lower is better) Translates to: SWEKPFKVSIWLSRR*RVVKLLRFSRPSTF Trigger: GAAGGTAGAGGGCCTGGAGAACCTGAGCAACTTGACCACCCTGCATCTGCGAGACAACCAGATTGAAACTTTGAATGGCTTCTCCCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | GGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACTAGCAAGTCCACTGCCAATCTaGCAGAGTAATGAGAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: GPSQLTSSAPLYRQHLLASPLPI*QSNESP Trigger: AGGGCTCTCATTACTCTGCAAGATTGGCAGTGGACT...TGCTAGTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | TGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTTGGGAAGGTAGATTCCCTTaGTGGATTCCAGCTGGTTCC | + |
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Preference number: 5 (lower is better) Translates to: CDGAMNVVVPHWSLISSWEGRFP*WIPAGS Trigger: GGAACCAGCTGGAATCCACAAAGGGAATCTACCTTC...CCAAGAACTGATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 90 bp | TCAAAGTTTCAATCTGGTTGTCTCGCAGATGCAGGGTGGTCAAGTTaGTCAGGTTCTCCAGGCCCTCTACCTTCTTCAGCAGGTTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: SKFQSGCLADAGWSS*SGSPGPLPSSAGFE Trigger: CTCAAAACCTGCTGAAGAAGGTAGAGGGCCTGGAGAACCTGAGCAACTTGACCACCCTGCATCTGCGAGACAACCAGATTGAAACTTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 90 bp | AGAAGCCATTCAAAGTTTCAATCTGGTTGTCTCGCAGATGCAGGGTaGTCAAGTTGCTCAGGTTCTCCAGGCCCTCTACCTTCTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: RSHSKFQSGCLADAG*SSCSGSPGPLPSSA Trigger: TGCTGAAGAAGGTAGAGGGCCTGGAGAACCTGAGCAACTTGACCACCCTGCATCTGCGAGACAACCAGATTGAAACTTTGAATGGCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | GGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACAACACCTACTAGCACATTCCTCTATCTCCTaGTCACTTTCCACTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: GPSQLTSSAPLYRQHLLAHSSIS*SLSTSS Trigger: GGATGAAGTGGAAAGTGACAAGGAGATAGAGGAATG...TGCTAGTAGGTGTTGTCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | TGTGACGGGGCTATGAATGTGGTGGTCCCCCACTGGAGTCTTATCAGTTCTTGGCTTCTTCAGCAGGTTTaGAGCCAGGTAGAGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: CDGAMNVVVPHWSLISSWLLQQV*SQVEIL Trigger: AAGAATCTCTACCTGGCTCAAAACCTGCTGAAGAAG...CCAAGAACTGATAAGACTCCAGTGGGGGACCACCACATTCATAGCCCCGTCACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | TTGGGATGTGATGGATTTCCAGTCTGGGACAAAAAGGAGCATCTCCCACTTCCTAGTCCACTGCCAATCTaGCAGAGTAATGAGAGCCCT | + |
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Preference number: 5 (lower is better) Translates to: LGCDGFPVWDKKEHLPLPSPLPI*QSNESP Trigger: AGGGCTCTCATTACTCTGCAAGATTGGCAGTGGACT...AGGAAGTGGGAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | TTTGAAACCTCAACTGGCCCATCACAGCTCACTTCCTCAGCGCCTCTCTATAGACATTCCTCTATCTCCTaGTCACTTTCCACTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: FETSTGPSQLTSSAPLYRHSSIS*SLSTSS Trigger: GGATGAAGTGGAAAGTGACAAGGAGATAGAGGAATG...TCTATAGAGAGGCGCTGAGGAAGTGAGCTGTGATGGGCCAGTTGAGGTTTCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS-3UTR CAA 90 bp | GCCTTGGGATGTGATGGATTTCCAGTCTGGGACAAAAAGGAGCATCTCCCACTTCTTCTTCAGCAGGTTTaGAGCCAGGTAGAGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: ALGCDGFPVWDKKEHLPLLLQQV*SQVEIL Trigger: AAGAATCTCTACCTGGCTCAAAACCTGCTGAAGAAG...AAGTGGGAGATGCTCCTTTTTGTCCCAGACTGGAAATCCATCACATCCCAAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 90 bp | AGCTCTGCCAGATCACTAATCATATTGCTCCTCAAGTTGAGGTACTaGAGCGACTTCATTTCCTGGGAGAAGCCATTCAAAGTTTCAATC | + |
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Preference number: 5 (lower is better) Translates to: SSARSLIILLLKLRY*SDFISWEKPFKVSI Trigger: GATTGAAACTTTGAATGGCTTCTCCCAGGAAATGAAGTCGCTGCAGTACCTCAACTTGAGGAGCAATATGATTAGTGATCTGGCAGAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 72 bp | CAGGGCCTCCTGGCGGTAGTCGGTCTCATCCGCACATaGGTTGTCCAGCAGCACCAGGGCTCGAAGTTTGGG | + |
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Preference number: 6 (lower is better) Translates to: QGLLAVVGLIRT*VVQQHQGSKFG Trigger: CCCAAACTTCGAGCCCTGGTGCTGCTGGACAACCCATGTGCGGATGAGACCGACTACCGCCAGGAGGCCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 72 bp | GCACATGGGTTGTCCAGCAGCACCAGGGCTCGAAGTTaGGGCAGGTCCCGCAGTTTGGCCAGCTCTGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: AHGLSSSTRARS*GRSRSLASSAR Trigger: TCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGTGCTGCTGGACAACCCATGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 72 bp | AGGCTCGACAGTCTCTCGGGGTCCAGACCAGTCACCTaGTGGATGCGGTTCCCTTTGAGATCCAGGCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: RLDSLSGSRPVT*WMRFPLRSRLP Trigger: GGGAAGCCTGGATCTCAAAGGGAACCGCATCCACCAGGTGACTGGTCTGGACCCCGAGAGACTGTCGAGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 72 bp | CACATGGGTTGTCCAGCAGCACCAGGGCTCGAAGTTTaGGCAGGTCCCGCAGTTTGGCCAGCTCTGCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: HMGCPAAPGLEV*AGPAVWPALPD Trigger: ATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGTGCTGCTGGACAACCCATGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS TCA 72 bp | GGTCCAGACCAGTCACCTGGTGGATGCGGTTCCCTTTaGGATCCAGGCTTCCCAGACGGGGGTGAAAGATGC | + |
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Preference number: 6 (lower is better) Translates to: GPDQSPGGCGSL*DPGFPDGGERC Trigger: GCATCTTTCACCCCCGTCTGGGAAGCCTGGATCTCAAAGGGAACCGCATCCACCAGGTGACTGGTCTGGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CCA 72 bp | CTCGACAGTCTCTCGGGGTCCAGACCAGTCACCTGGTaGATGCGGTTCCCTTTGAGATCCAGGCTTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: LDSLSGSRPVTW*MRFPLRSRLPR Trigger: TCTGGGAAGCCTGGATCTCAAAGGGAACCGCATCCACCAGGTGACTGGTCTGGACCCCGAGAGACTGTCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 90 bp | GTCTCATCCGCACATGGGTTGTCCAGCAGCACCAGGGCTCGAAGTTaGGGCAGGTCCCGCAGTTTGGCCAGCTCTGCCAGATCACTAATC | + |
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Preference number: 6 (lower is better) Translates to: VSSAHGLSSSTRARS*GRSRSLASSARSLI Trigger: GATTAGTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGTGCTGCTGGACAACCCATGTGCGGATGAGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 90 bp | AACTGGTGGCAAGTACGGTTCCATGTCCTGGTCCGGATCGAGATCTaGATCCTGTTCCTCCTTCAGCCTCTGACGGATCTCCTCGGCCTC | + |
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Preference number: 6 (lower is better) Translates to: NWWQVRFHVLVRIEI*ILFLLQPLTDLLGL Trigger: GAGGCCGAGGAGATCCGTCAGAGGCTGAAGGAGGAACAGGATCAAGATCTCGATCCGGACCAGGACATGGAACCGTACTTGCCACCAGTT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS TCA 72 bp | AGAGTAATGAGAGCCCTTCCTTCATCATGGCCTCCGTaGTGGGGGTGGGCAGCCATTCCTCAGAGGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RVMRALPSSWPP*WGWAAIPQRLL Trigger: AAGAAGCCTCTGAGGAATGGCTGCCCACCCCCATCACGGAGGCCATGATGAAGGAAGGGCTCTCATTACTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 ENSMUST00000128697.8 |
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| CDS CAA 72 bp | AGCACCAGGGCTCGAAGTTTGGGCAGGTCCCGCAGTTaGGCCAGCTCTGCCAGATCACTAATCATATTGCTC | + |
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Preference number: 6 (lower is better) Translates to: STRARSLGRSRS*ASSARSLIILL Trigger: GAGCAATATGATTAGTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 90 bp | TTGTCCAGCAGCACCAGGGCTCGAAGTTTGGGCAGGTCCCGCAGTTaGGCCAGCTCTGCCAGATCACTAATCATATTGCTCCTCAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: LSSSTRARSLGRSRS*ASSARSLIILLLKL Trigger: CAACTTGAGGAGCAATATGATTAGTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGAGCCCTGGTGCTGCTGGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 72 bp | CAATCTGGTTGTCTCGCAGATGCAGGGTGGTCAAGTTaGTCAGGTTCTCCAGGCCCTCTACCTTCTTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: QSGCLADAGWSS*SGSPGPLPSSA Trigger: TGCTGAAGAAGGTAGAGGGCCTGGAGAACCTGAGCAACTTGACCACCCTGCATCTGCGAGACAACCAGATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 72 bp | TTCCTCCTTCAGCCTCTGACGGATCTCCTCGGCCTCTaGCCGGTCATCATCCTCATAGAATTCTTTGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: FLLQPLTDLLGL*PVIILIEFFVQ Trigger: CTGGACAAAGAATTCTATGAGGATGATGACCGGGCAGAGGCCGAGGAGATCCGTCAGAGGCTGAAGGAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 72 bp | TCAATCTGGTTGTCTCGCAGATGCAGGGTGGTCAAGTaGCTCAGGTTCTCCAGGCCCTCTACCTTCTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: SIWLSRRCRVVK*LRFSRPSTFFS Trigger: GCTGAAGAAGGTAGAGGGCCTGGAGAACCTGAGCAACTTGACCACCCTGCATCTGCGAGACAACCAGATTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 90 bp | GGCAGGTCCCGCAGTTTGGCCAGCTCTGCCAGATCACTAATCATATaGCTCCTCAAGTTGAGGTACTGCAGCGACTTCATTTCCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: GRSRSLASSARSLII*LLKLRYCSDFISWE Trigger: CTCCCAGGAAATGAAGTCGCTGCAGTACCTCAACTTGAGGAGCAATATGATTAGTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS TCA 72 bp | TTCCCAGACGGGGGTGAAAGATGCCTTCAGTGTCTATaGTCTGGTTGTAGGAAAAGCTGGCGATCTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: FPDGGERCLQCL*SGCRKSWRSAG Trigger: ACCTGCAGATCGCCAGCTTTTCCTACAACCAGATCATAGACACTGAAGGCATCTTTCACCCCCGTCTGGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 72 bp | TCGAAGTTTGGGCAGGTCCCGCAGTTTGGCCAGCTCTaGCAGATCACTAATCATATTGCTCCTCAAGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: SKFGQVPQFGQL*QITNHIAPQVE Trigger: CTCAACTTGAGGAGCAATATGATTAGTGATCTGGCAGAGCTGGCCAAACTGCGGGACCTGCCCAAACTTCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS CAA 72 bp | CGCAGTTTGGCCAGCTCTGCCAGATCACTAATCATATaGCTCCTCAAGTTGAGGTACTGCAGCGACTTCATT | + |
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Preference number: 6 (lower is better) Translates to: RSLASSARSLII*LLKLRYCSDFI Trigger: AATGAAGTCGCTGCAGTACCTCAACTTGAGGAGCAATATGATTAGTGATCTGGCAGAGCTGGCCAAACTGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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| CDS GCA 72 bp | AGATCACTAATCATATTGCTCCTCAAGTTGAGGTACTaGAGCGACTTCATTTCCTGGGAGAAGCCATTCAAA | + |
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Preference number: 6 (lower is better) Translates to: RSLIILLLKLRY*SDFISWEKPFK Trigger: TTTGAATGGCTTCTCCCAGGAAATGAAGTCGCTGCAGTACCTCAACTTGAGGAGCAATATGATTAGTGATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032218.10 ENSMUST00000112475.9 |
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