Pregenerated sensors for LRRC19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049799Ensembl transcript IDs: ENSMUST00000053419.9, ENSMUST00000107101.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTGAATATCTTTATTAAAGAGAAATTGGAATGTCAGAGCATTGTATaGTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCTG | + |
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Preference number: 1 (lower is better) Translates to: LNIFIKEKLECQSIV*SCIMYQGLLSHFYL Trigger: CAGGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAATAAAGATATTCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCGGAGAGAGAGAGAAATaGACCCAGGGACCTGAACAT | + |
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Preference number: 2 (lower is better) Translates to: CQSIVCSCIMYQGLLSHFGEREK*TQGPEH Trigger: ATGTTCAGGTCCCTGGGTTCATTTCTCTCTCTCTCC...GAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCGGAGAGAGAGAGAAATaGACCCAGGGACCTGAACAT | + |
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Preference number: 2 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLGEREK*TQGPEH Trigger: ATGTTCAGGTCCCTGGGTTCATTTCTCTCTCTCTCC...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | TGGAATACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGCATTGCTCTGTTTATTaGAACAGAGATAGATGTGTG | + |
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Preference number: 2 (lower is better) Translates to: WNTHTERERERERERGEEHCSVY*NRDRCV Trigger: CACACATCTATCTCTGTTTCAATAAACAGAGCAATG...CTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTTAGTACTGTACTCTTaGGTTATCAGAGAACACCTG | + |
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Preference number: 2 (lower is better) Translates to: CQSIVCSCIMYQGLLSHFLVLYS*VIREHL Trigger: CAGGTGTTCTCTGATAACTCAAGAGTACAGTACTAA...GAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCCATTGCTCTGTTTATTaGAACAGAGATAGATGTGTG | + |
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Preference number: 2 (lower is better) Translates to: RALYARVSCTKVCCHISTHCSVY*NRDRCV Trigger: CACACATCTATCTCTGTTTCAATAAACAGAGCAATG...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | ACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTTTCCTTTTAGTACTGTACTCTTaGGTTATCAGAGAACACCTG | + |
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Preference number: 2 (lower is better) Translates to: TKVCCHISTCVPSSTLFLLVLYS*VIREHL Trigger: CAGGTGTTCTCTGATAACTCAAGAGTACAGTACTAA...AAGGAAAAGAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR TCA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCATTCCTTCAGTAATTTaGCCAGTTGCCTTTTTCTTC | + |
|
Preference number: 2 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLIPSVI*PVAFFF Trigger: GAAGAAAAAGGCAACTGGTCAAATTACTGAAGGAAT...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR CAA 90 bp | TGGAATACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGCTTAGTACTGTACTCTaGAGTTATCAGAGAACACCT | + |
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Preference number: 3 (lower is better) Translates to: WNTHTERERERERERGEELSTVL*SYQRTP Trigger: AGGTGTTCTCTGATAACTCAAGAGTACAGTACTAAG...CTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATTCCA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR TCA 72 bp | GAGGAGAGGAGAGAGAGAGAAATGAACCCAGGGACCTaGACATGCTATATAGATGCCCTTCAAAAACTTAGT | + |
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Preference number: 3 (lower is better) Translates to: EERREREMNPGT*TCYIDALQKLS Trigger: ACTAAGTTTTTGAAGGGCATCTATATAGCATGTTCAGGTCCCTGGGTTCATTTCTCTCTCTCTCCTCTCCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR CAA 90 bp | ACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTTTCCTTGATTCCTTCAGTAATTaGACCAGTTGCCTTTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: TKVCCHISTCVPSSTLFLDSFSN*TSCLFL Trigger: AAGAAAAAGGCAACTGGTCAAATTACTGAAGGAATC...AAGGAAAAGAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR CAA 90 bp | TTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGCTTAGTACTGTACTCTaGAGTTATCAGAGAACACCT | + |
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Preference number: 3 (lower is better) Translates to: LKRNWNVRALYARVSCTKLSTVL*SYQRTP Trigger: AGGTGTTCTCTGATAACTCAAGAGTACAGTACTAAG...CTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR-3UTR CAA 90 bp | ATTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGATTCCTTCAGTAATTaGACCAGTTGCCTTTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: IKEKLECQSIVCSCIMYQDSFSN*TSCLFL Trigger: AAGAAAAAGGCAACTGGTCAAATTACTGAAGGAATC...TTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | TGGAATACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGCAGCACCCTGCTATCTaGAGCATTCAGAGTAATTCG | + |
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Preference number: 4 (lower is better) Translates to: WNTHTERERERERERGEEQHPAI*SIQSNS Trigger: CGAATTACTCTGAATGCTGCAGATAGCAGGGTGCTG...CTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | TGGAATACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGTTCCCAAGAGGCTCATaGTCTGAGGTCCATGTTAAG | + |
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Preference number: 4 (lower is better) Translates to: WNTHTERERERERERGEEFPRGS*SEVHVK Trigger: CTTAACATGGACCTCAGAGCATGAGCCTCTTGGGAA...CTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCACATCTGCAGCACCCTaGTATCTGCAGCATTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RALYARVSCTKVCCHISTTSAAP*YLQHSE Trigger: CTCTGAATGCTGCAGATAGCAGGGTGCTGCAGATGT...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | TGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCACATCTGCAGCACCCTaGTATCTGCAGCATTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: CQSIVCSCIMYQGLLSHFTSAAP*YLQHSE Trigger: CTCTGAATGCTGCAGATAGCAGGGTGCTGCAGATGT...GAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | GAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATCAGAAGCTTGGCTTTTaGCAGATGGTAGTAGCATGG | + |
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Preference number: 4 (lower is better) Translates to: ECQSIVCSCIMYQGLLSHQKLGF*QMVVAW Trigger: CCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTG...ATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | TGGAATACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGGGTACTGATACCCTCTaGAATCAAAGTGTAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: WNTHTERERERERERGEEGTDTL*NQSVIP Trigger: AGGAATTACACTTTGATTCCAGAGGGTATCAGTACC...CTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | ACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTTTCCTTCAGCACCCTGCTATCTaGAGCATTCAGAGTAATTCG | + |
|
Preference number: 4 (lower is better) Translates to: TKVCCHISTCVPSSTLFLQHPAI*SIQSNS Trigger: CGAATTACTCTGAATGCTGCAGATAGCAGGGTGCTG...AAGGAAAAGAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTCCCAAGAGGCTCATaGTCTGAGGTCCATGTTAAG | + |
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Preference number: 4 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLFPRGS*SEVHVK Trigger: CTTAACATGGACCTCAGAGCATGAGCCTCTTGGGAA...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | GAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATAAGTTAGCAGTACAGTaGCAACAACACCAACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ECQSIVCSCIMYQGLLSHKLAVQ*QQHQPG Trigger: TCCTGGTTGGTGTTGTTGCCACTGTACTGCTAACTT...ATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | TGGAATACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGTCTACCACAAATGCATaGAACTGTTCAAATATCACT | + |
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Preference number: 4 (lower is better) Translates to: WNTHTERERERERERGEESTTNA*NCSNIT Trigger: AGTGATATTTGAACAGTTGCATGCATTTGTGGTAGA...CTCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTATTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | ACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTTTCCTTAAGTTAGCAGTACAGTaGCAACAACACCAACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: TKVCCHISTCVPSSTLFLKLAVQ*QQHQPG Trigger: TCCTGGTTGGTGTTGTTGCCACTGTACTGCTAACTT...AAGGAAAAGAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCGAATTCCTAGTGGACTaGAAGTCTTCAGTTATAGTG | + |
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Preference number: 4 (lower is better) Translates to: RALYARVSCTKVCCHISTEFLVD*KSSVIV Trigger: CACTATAACTGAAGACTTTCAGTCCACTAGGAATTC...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | GAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATAGAGGCGTATCAAATTaGCTTGCAGATTCAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: ECQSIVCSCIMYQGLLSHRGVSN*LADSEL Trigger: AAGTTCTGAATCTGCAAGGCAATTTGATACGCCTCT...ATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCGGTACTGATACCCTCTaGAATCAAAGTGTAATTCCT | + |
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Preference number: 4 (lower is better) Translates to: RALYARVSCTKVCCHISTGTDTL*NQSVIP Trigger: AGGAATTACACTTTGATTCCAGAGGGTATCAGTACC...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | ACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTTTCCTTCTGGGTAGCTACACATaGTCATGTTCTCGTTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: TKVCCHISTCVPSSTLFLLGSYT*SCSRFL Trigger: TAGAAAACGAGAACATGACCATGTGTAGCTACCCAG...AAGGAAAAGAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | TGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCGAAATAAATGTAGAGTaGCATTCAGTTGTGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: CQSIVCSCIMYQGLLSHFEINVE*HSVVKG Trigger: GCCCTTCACAACTGAATGCCACTCTACATTTATTTC...GAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | ATTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAACAGAAGCTTGGCTTTTaGCAGATGGTAGTAGCATGG | + |
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Preference number: 4 (lower is better) Translates to: IKEKLECQSIVCSCIMYQQKLGF*QMVVAW Trigger: CCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTG...TTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTGTAATTCCTTCTGCTaGAATTACATGGGACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLCNSFC*NYMGLL Trigger: CAGAAGTCCCATGTAATTTCAGCAGAAGGAATTACA...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | TTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGTCAGGTAGAGCTCAGTaGGTAAAGAGTACATCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LKRNWNVRALYARVSCTKSGRAQ*VKSTSA Trigger: TGCAGATGTACTCTTTACTCACTGAGCTCTACCTGA...CTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | GAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATCGTATCTGTTATTTGTaGAAGAGAACTTGGGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: ECQSIVCSCIMYQGLLSHRICYL*KRTWVS Trigger: AGAAACCCAAGTTCTCTTTCACAAATAACAGATACG...ATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCCGTATCAAATTGCCTTaGAGATTCAGAACTTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: RALYARVSCTKVCCHISTRIKLP*RFRTFR Trigger: CCTAAAAGTTCTGAATCTGCAAGGCAATTTGATACG...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCAGAGGCGTATCAAATTaGCTTGCAGATTCAGAACTT | + |
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Preference number: 4 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLRGVSN*LADSEL Trigger: AAGTTCTGAATCTGCAAGGCAATTTGATACGCCTCT...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | ACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCTTTTCCTTTCTGTTTCAGAAGCTTaGCTTTTGACAGATGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: TKVCCHISTCVPSSTLFLSVSEA*LLTDGS Trigger: ACTACCATCTGTCAAAAGCCAAGCTTCTGAAACAGA...AAGGAAAAGAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCGAAATAAATGTAGAGTaGCATTCAGTTGTGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLEINVE*HSVVKG Trigger: GCCCTTCACAACTGAATGCCACTCTACATTTATTTC...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | GAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATGTTCAAATATCACTGTaGTGTCTTCAGAGTTCGTAT | + |
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Preference number: 4 (lower is better) Translates to: ECQSIVCSCIMYQGLLSHVQISL*CLQSSY Trigger: ATACGAACTCTGAAGACACCACAGTGATATTTGAAC...ATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR GCA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCTCTACCACAAATGCATaGAACTGTTCAAATATCACT | + |
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Preference number: 4 (lower is better) Translates to: RALYARVSCTKVCCHISTSTTNA*NCSNIT Trigger: AGTGATATTTGAACAGTTGCATGCATTTGTGGTAGA...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | TGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCAATATTGTACCATACTaGGCACTTGATAGCAATGAA | + |
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Preference number: 4 (lower is better) Translates to: CQSIVCSCIMYQGLLSHFNIVPY*ALDSNE Trigger: TTCATTGCTATCAAGTGCCCAGTATGGTACAATATT...GAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | TTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGAATTCCTAGTGGACTaGAAGTCTTCAGTTATAGTG | + |
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Preference number: 4 (lower is better) Translates to: LKRNWNVRALYARVSCTKEFLVD*KSSVIV Trigger: CACTATAACTGAAGACTTTCAGTCCACTAGGAATTC...CTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | TTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGTCTGTTTCAGAAGCTTaGCTTTTGACAGATGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LKRNWNVRALYARVSCTKSVSEA*LLTDGS Trigger: ACTACCATCTGTCAAAAGCCAAGCTTCTGAAACAGA...CTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | ATTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAATGTAATTCCTTCTGCTaGAATTACATGGGACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: IKEKLECQSIVCSCIMYQCNSFC*NYMGLL Trigger: CAGAAGTCCCATGTAATTTCAGCAGAAGGAATTACA...TTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | TTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGGTTCAAATATCACTGTaGTGTCTTCAGAGTTCGTAT | + |
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Preference number: 4 (lower is better) Translates to: LKRNWNVRALYARVSCTKVQISL*CLQSSY Trigger: ATACGAACTCTGAAGACACCACAGTGATATTTGAAC...CTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR TCA 90 bp | ATTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAACGTATCTGTTATTTGTaGAAGAGAACTTGGGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: IKEKLECQSIVCSCIMYQRICYL*KRTWVS Trigger: AGAAACCCAAGTTCTCTTTCACAAATAACAGATACG...TTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| 3UTR CAA 72 bp | ATATCTTTATTAAAGAGAAATTGGAATGTCAGAGCATaGTATGCTCGTGTATCATGTACCAAGGTCTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ISLLKRNWNVRA*YARVSCTKVCC Trigger: ACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAATAAAGATAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CCA 90 bp | ATTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAAATATTGTACCATACTaGGCACTTGATAGCAATGAA | + |
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Preference number: 4 (lower is better) Translates to: IKEKLECQSIVCSCIMYQNIVPY*ALDSNE Trigger: TTCATTGCTATCAAGTGCCCAGTATGGTACAATATT...TTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS TCA 90 bp | CAGGTACAGTTCCATGGATTTCCATCCAGAGTTAGTATCTCCAGATaGGGTAGCTGTGGTGCATCGAAGAGGCGTATCAAATTGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: QVQFHGFPSRVSISR*GSCGASKRRIKLPC Trigger: GCAAGGCAATTTGATACGCCTCTTCGATGCACCACAGCTACCTCATCTGGAGATACTAACTCTGGATGGAAATCCATGGAACTGTACCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS GCA 90 bp | TCTCCAGATGAGGTAGCTGTGGTGCATCGAAGAGGCGTATCAAATTaGCTTGCAGATTCAGAACTTTTAGGTTATTTAGAGGCACAAATG | + |
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Preference number: 5 (lower is better) Translates to: SPDEVAVVHRRGVSN*LADSELLGYLEAQM Trigger: CATTTGTGCCTCTAAATAACCTAAAAGTTCTGAATCTGCAAGGCAATTTGATACGCCTCTTCGATGCACCACAGCTACCTCATCTGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS GCA 90 bp | ATGTTCTCGTTTTCTAATGTCACATTAGACGTGTTCAGCCAGTTGTaGAACTCAAGTAGACCACAGGTACAGTTCCATGGATTTCCATCC | + |
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Preference number: 5 (lower is better) Translates to: MFSFSNVTLDVFSQL*NSSRPQVQFHGFPS Trigger: GGATGGAAATCCATGGAACTGTACCTGTGGTCTACTTGAGTTGCACAACTGGCTGAACACGTCTAATGTGACATTAGAAAACGAGAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CAA 90 bp | TATCATGTACCAAGGTCTGTTGTCACATTTCTACCTGTGTTCCATCTTCAACTCAAGAGGCGTATCAAATaGCCTTGCAGATTCAGAACT | + |
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Preference number: 5 (lower is better) Translates to: YHVPRSVVTFLPVFHLQLKRRIK*PCRFRT Trigger: AGTTCTGAATCTGCAAGGCAATTTGATACGCCTCTT...GAGTTGAAGATGGAACACAGGTAGAAATGTGACAACAGACCTTGGTACATGATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CAA 90 bp | AGAGCATTGTATGCTCGTGTATCATGTACCAAGGTCTGTTGTCACATTTCTACCTTGTGTGAAGAGCTATaGAAAGATGAATTCCTAGTG | + |
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Preference number: 5 (lower is better) Translates to: RALYARVSCTKVCCHISTLCEEL*KDEFLV Trigger: CACTAGGAATTCATCTTTCAATAGCTCTTCACACAA...GGTAGAAATGTGACAACAGACCTTGGTACATGATACACGAGCATACAATGCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS CCA 90 bp | CATCATCATCTACCACAAATGCATGCAACTGTTCAAATATCACTGTaGTGTCTTCAGAGTTCGTATCTGTTATTTGTGAAAGAGAACTTG | + |
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Preference number: 5 (lower is better) Translates to: HHHLPQMHATVQISL*CLQSSYLLFVKENL Trigger: CAAGTTCTCTTTCACAAATAACAGATACGAACTCTGAAGACACCACAGTGATATTTGAACAGTTGCATGCATTTGTGGTAGATGATGATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CAA 90 bp | ATTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAAAGAGGCGTATCAAATaGCCTTGCAGATTCAGAACT | + |
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Preference number: 5 (lower is better) Translates to: IKEKLECQSIVCSCIMYQKRRIK*PCRFRT Trigger: AGTTCTGAATCTGCAAGGCAATTTGATACGCCTCTT...TTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS-3UTR CAA 90 bp | TTAAAGAGAAATTGGAATGTCAGAGCATTGTATGCTCGTGTATCATGTACCAAGTTGTGTGAAGAGCTATaGAAAGATGAATTCCTAGTG | + |
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Preference number: 5 (lower is better) Translates to: LKRNWNVRALYARVSCTKLCEEL*KDEFLV Trigger: CACTAGGAATTCATCTTTCAATAGCTCTTCACACAA...CTTGGTACATGATACACGAGCATACAATGCTCTGACATTCCAATTTCTCTTTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS TCA 90 bp | GTTAAGTTGTGTGAAGAGCTATTGAAAGATGAATTCCTAGTGGACTaGAAGTCTTCAGTTATAGTGGAAATAAATGTAGAGTGGCATTCA | + |
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Preference number: 5 (lower is better) Translates to: VKLCEELLKDEFLVD*KSSVIVEINVEWHS Trigger: TGAATGCCACTCTACATTTATTTCCACTATAACTGAAGACTTTCAGTCCACTAGGAATTCATCTTTCAATAGCTCTTCACACAACTTAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS GCA 72 bp | CCAACCAGGAAAGCCCAGCTTTTCCCAAGAGGCTCATaGTCTGAGGTCCATGTTAAGTTGTGTGAAGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: PTRKAQLFPRGS*SEVHVKLCEEL Trigger: TAGCTCTTCACACAACTTAACATGGACCTCAGAGCATGAGCCTCTTGGGAAAAGCTGGGCTTTCCTGGTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS CCA 72 bp | CTGCTGAAATTACATGGGACTTCTGTTTCAGAAGCTTaGCTTTTGACAGATGGTAGTAGCATGGAGAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: LLKLHGTSVSEA*LLTDGSSMEKS Trigger: GCTCTTCTCCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTGAAACAGAAGTCCCATGTAATTTCAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS CAA 90 bp | CTTCTGCTGAAATTACATGGGACTTCTGTTTCAGAAGCTTGGCTTTaGACAGATGGTAGTAGCATGGAGAAGAGCCAAAACATGAAGCGT | + |
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Preference number: 6 (lower is better) Translates to: LLLKLHGTSVSEAWL*TDGSSMEKSQNMKR Trigger: ACGCTTCATGTTTTGGCTCTTCTCCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTGAAACAGAAGTCCCATGTAATTTCAGCAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS CAA 90 bp | GTCATGTTCTCGTTTTCTAATGTCACATTAGACGTGTTCAGCCAGTaGTGCAACTCAAGTAGACCACAGGTACAGTTCCATGGATTTCCA | + |
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Preference number: 6 (lower is better) Translates to: VMFSFSNVTLDVFSQ*CNSSRPQVQFHGFP Trigger: TGGAAATCCATGGAACTGTACCTGTGGTCTACTTGAGTTGCACAACTGGCTGAACACGTCTAATGTGACATTAGAAAACGAGAACATGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS GCA 72 bp | GAGGTAGCTGTGGTGCATCGAAGAGGCGTATCAAATTaGCTTGCAGATTCAGAACTTTTAGGTTATTTAGAG | + |
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Preference number: 6 (lower is better) Translates to: EVAVVHRRGVSN*LADSELLGYLE Trigger: CTCTAAATAACCTAAAAGTTCTGAATCTGCAAGGCAATTTGATACGCCTCTTCGATGCACCACAGCTACCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS GCA 72 bp | TTTTCTAATGTCACATTAGACGTGTTCAGCCAGTTGTaGAACTCAAGTAGACCACAGGTACAGTTCCATGGA | + |
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Preference number: 6 (lower is better) Translates to: FSNVTLDVFSQL*NSSRPQVQFHG Trigger: TCCATGGAACTGTACCTGTGGTCTACTTGAGTTGCACAACTGGCTGAACACGTCTAATGTGACATTAGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS CAA 72 bp | TCGTTTTCTAATGTCACATTAGACGTGTTCAGCCAGTaGTGCAACTCAAGTAGACCACAGGTACAGTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: SFSNVTLDVFSQ*CNSSRPQVQFH Trigger: ATGGAACTGTACCTGTGGTCTACTTGAGTTGCACAACTGGCTGAACACGTCTAATGTGACATTAGAAAACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS TCA 72 bp | AATTACATGGGACTTCTGTTTCAGAAGCTTGGCTTTTaGCAGATGGTAGTAGCATGGAGAAGAGCCAAAACA | + |
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Preference number: 6 (lower is better) Translates to: NYMGLLFQKLGF*QMVVAWRRAKT Trigger: TGTTTTGGCTCTTCTCCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTGAAACAGAAGTCCCATGTAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS CAA 72 bp | AAATTACATGGGACTTCTGTTTCAGAAGCTTGGCTTTaGACAGATGGTAGTAGCATGGAGAAGAGCCAAAAC | + |
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Preference number: 6 (lower is better) Translates to: KLHGTSVSEAWL*TDGSSMEKSQN Trigger: GTTTTGGCTCTTCTCCATGCTACTACCATCTGTCAAAAGCCAAGCTTCTGAAACAGAAGTCCCATGTAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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| CDS TCA 72 bp | TGTGAAGAGCTATTGAAAGATGAATTCCTAGTGGACTaGAAGTCTTCAGTTATAGTGGAAATAAATGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: CEELLKDEFLVD*KSSVIVEINVE Trigger: CTCTACATTTATTTCCACTATAACTGAAGACTTTCAGTCCACTAGGAATTCATCTTTCAATAGCTCTTCACA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053419.9 ENSMUST00000107101.2 |
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