RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRRC14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033728

Ensembl transcript IDs: ENSMUST00000036423.15, ENSMUST00000127208.8, ENSMUST00000136840.8, ENSMUST00000137649.8, ENSMUST00000142610.8, ENSMUST00000155735.2

Found 294 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATAGCGCTGCTGGCGCTCACCGCGCTGTTGTTGGCAGCTATGATCTaGCGACGCCGACGCCGGCGGAAAAAGGTGCCTGCGCCGTCGGGA +
Preference number: 1 (lower is better)
Translates to: IALLALTALLLAAMI*RRRRRRKKVPAPSG
Trigger: TCCCGACGGCGCAGGCACCTTTTTCCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 90 bp CGCCAGGCTTGGGCGGGCACGGCACCCGAGATACTGGCAGCGGCATaGTCTTCCTCACCAACATCACACTGGCTCACGCAGGCAAGTACG +
Preference number: 1 (lower is better)
Translates to: RQAWAGTAPEILAAA*SSSPTSHWLTQAST
Trigger: CGTACTTGCCTGCGTGAGCCAGTGTGATGTTGGTGAGGAAGAGCATGCCGCTGCCAGTATCTCGGGTGCCGTGCCCGCCCAAGCCTGGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp CAGGTCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCTaGAGAAAGGTGCCCCAGCCTCGCGATGGTAAGCCTCAAGCCCAG +
Preference number: 1 (lower is better)
Translates to: QVACQASGYPQPLVV*RKVPQPRDGKPQAQ
Trigger: CTGGGCTTGAGGCTTACCATCGCGAGGCTGGGGCACCTTTCTCCAGACCACCAGGGGCTGTGGGTAGCCTGATGCCTGACAGGCGACCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp ACCTGCAGGTCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTaGTCTGGAGAAAGGTGCCCCAGCCTCGCGATGGTAAGCCTCAAG +
Preference number: 1 (lower is better)
Translates to: TCRSPVRHQATHSPW*SGERCPSLAMVSLK
Trigger: CTTGAGGCTTACCATCGCGAGGCTGGGGCACCTTTCTCCAGACCACCAGGGGCTGTGGGTAGCCTGATGCCTGACAGGCGACCTGCAGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp CGAGTGAGGGTGGGCAGGGTAGCCAACAGCTGGGCATCAGCAAGCTaGCACTCAGTCAGCTCAAGATGCAGCAGTGTGGTGGCTACTGCC +
Preference number: 1 (lower is better)
Translates to: RVRVGRVANSWASAS*HSVSSRCSSVVATA
Trigger: GGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCAGCTGTTGGCTACCCTGCCCACCCTCACTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR GCA 90 bp GGCAGCTATGATCTGCCGACGCCGACGCCGGCGGAAAAAGGTGCCTaGGCCGTCGGGAGAAGGCACCCTATTTGTCAACGATTATTCGGA +
Preference number: 1 (lower is better)
Translates to: GSYDLPTPTPAEKGA*AVGRRHPICQRLFG
Trigger: TCCGAATAATCGTTGACAAATAGGGTGCCTTCTCCCGACGGCGCAGGCACCTTTTTCCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp CGGAGACTGGCACATCGAGTGAGGGTGGGCAGGGTAGCCAACAGCTaGGCATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGT +
Preference number: 1 (lower is better)
Translates to: RRLAHRVRVGRVANS*ASASWHSVSSRCSS
Trigger: ACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCAGCTGTTGGCTACCCTGCCCACCCTCACTCGATGTGCCAGTCTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CCA 90 bp GGGCATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTaGTGGCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTGGT +
Preference number: 1 (lower is better)
Translates to: GHQQAGTQSAQDAAV*WLLPAADPGRVSTG
Trigger: ACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR TCA 90 bp AACTTGTCATCAGGGGGAGCCAGGCAAAACTGGACAGAGCTCATGTaGCGACAGGGTTTCAGTGCCGGGCTGAGGGATGCAGAGGCTTGC +
Preference number: 1 (lower is better)
Translates to: NLSSGGARQNWTELM*RQGFSAGLRDAEAC
Trigger: GCAAGCCTCTGCATCCCTCAGCCCGGCACTGAAACCCTGTCGTCACATGAGCTCTGTCCAGTTTTGCCTGGCTCCCCCTGATGACAAGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 90 bp GCAAGTACGAATGCGAGGCCGCCAATGCAGGTGGCAAAGCTCGAGTaGCCTTTCATCTACTGGTCAACGCATCTCGGCAGCAGTCACAGC +
Preference number: 1 (lower is better)
Translates to: ASTNARPPMQVAKLE*PFIYWSTHLGSSHS
Trigger: GCTGTGACTGCTGCCGAGATGCGTTGACCAGTAGATGAAAGGGCACTCGAGCTTTGCCACCTGCATTGGCGGCCTCGCATTCGTACTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 90 bp CATCACACTGGCTCACGCAGGCAAGTACGAATGCGAGGCCGCCAATaGAGGTGGCAAAGCTCGAGTGCCCTTTCATCTACTGGTCAACGC +
Preference number: 1 (lower is better)
Translates to: HHTGSRRQVRMRGRQ*RWQSSSALSSTGQR
Trigger: GCGTTGACCAGTAGATGAAAGGGCACTCGAGCTTTGCCACCTGCATTGGCGGCCTCGCATTCGTACTTGCCTGCGTGAGCCAGTGTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp ACTGGCTCACGCAGGCAAGTACGAATGCGAGGCCGCCAATGCAGGTaGCAAAGCTCGAGTGCCCTTTCATCTACTGGTCAACGCATCTCG +
Preference number: 1 (lower is better)
Translates to: TGSRRQVRMRGRQCR*QSSSALSSTGQRIS
Trigger: CGAGATGCGTTGACCAGTAGATGAAAGGGCACTCGAGCTTTGCCACCTGCATTGGCGGCCTCGCATTCGTACTTGCCTGCGTGAGCCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp CATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTGGTaGCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTGGTTGC +
Preference number: 1 (lower is better)
Translates to: HQQAGTQSAQDAAVW*LLPAADPGRVSTGC
Trigger: GCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR TCA 90 bp TTCCAGGGGCCTCTGCAGGGTGCTGAGCAGTTGATCCAGCCTGCCTaGAAGGAGAGAAGACCCCATGCTGAGCTCCCGAAGACACATAAA +
Preference number: 1 (lower is better)
Translates to: FQGPLQGAEQLIQPA*KERRPHAELPKTHK
Trigger: TTTATGTGTCTTCGGGAGCTCAGCATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAACTGCTCAGCACCCTGCAGAGGCCCCTGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR GCA 90 bp TTGCGCGTACTAATGACGCAGGCACTGGGGATTGGCAGGTGTCGGTaGAGCTCCGCGCATGCTCAAAGTAAAGTTGAAGCCAGGCTTCTC +
Preference number: 1 (lower is better)
Translates to: LRVLMTQALGIGRCR*SSAHAQSKVEARLL
Trigger: GAGAAGCCTGGCTTCAACTTTACTTTGAGCATGCGCGGAGCTGCACCGACACCTGCCAATCCCCAGTGCCTGCGTCATTAGTACGCGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 90 bp AGATGTTCGTCATTGACCGATCCAAGCCCCTGTTCCCAGAGGTACTaGCTGAGGAGGCCCCAGAACACAATCCTCCCGATGGGCTCAAGT +
Preference number: 1 (lower is better)
Translates to: RCSSLTDPSPCSQRY*LRRPQNTILPMGSS
Trigger: ACTTGAGCCCATCGGGAGGATTGTGTTCTGGGGCCTCCTCAGGCAGTACCTCTGGGAACAGGGGCTTGGATCGGTCAATGACGAACATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 90 bp GGCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTGGTTGCCTaGCAGGTCGTTGCCACTCAAATCCAACTTTTTGAGATGGGCAGC +
Preference number: 1 (lower is better)
Translates to: GYCLQQTLEGCQLVA*QVVATQIQLFEMGS
Trigger: GCTGCCCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CCA 90 bp AAACTTCTCCTCATTGATGGAGGCTTCCAGAAGGACAGAGGCAGGTaGTGGCCAAGGAAGACCCTCATAGCAGTCCACAGGGAAGGGGTG +
Preference number: 1 (lower is better)
Translates to: KLLLIDGGFQKDRGR*WPRKTLIAVHREGV
Trigger: CACCCCTTCCCTGTGGACTGCTATGAGGGTCTTCCTTGGCCACCACCTGCCTCTGTCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR GCA 90 bp ACATCAAACAGAACAGGGGCGCACAGGCCTGAGATAGCAACAGGCTaGCAGATACTGGGAGCAGGTGAAGGGTACTGCAGAAAGCAGAAG +
Preference number: 1 (lower is better)
Translates to: TSNRTGAHRPEIATG*QILGAGEGYCRKQK
Trigger: CTTCTGCTTTCTGCAGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTGTTGCTATCTCAGGCCTGTGCGCCCCTGTTCTGTTTGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR GCA 90 bp TCGGGAGAAGGCACCCTATTTGTCAACGATTATTCGGATGGGCCTTaGACCTTTGCACAGCTCGAGGAGCTCCGTGATGACCATGGACAC +
Preference number: 1 (lower is better)
Translates to: SGEGTLFVNDYSDGP*TFAQLEELRDDHGH
Trigger: GTGTCCATGGTCATCACGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACAAATAGGGTGCCTTCTCCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 90 bp AGTGTGGTGGCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTGCCACTCAAATCCAACTTTTTGAGA +
Preference number: 1 (lower is better)
Translates to: SVVATACSRPWKGVN*LPDRSLPLKSNFLR
Trigger: TCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR TCA 90 bp TCAACTGGTTGCCTGACAGGTCGTTGCCACTCAAATCCAACTTTTTaGGATGGGCAGCATGAGAACTCTGAGCCAGGAAGCGTAGGTCCT +
Preference number: 1 (lower is better)
Translates to: STGCLTGRCHSNPTF*DGQHENSEPGSVGP
Trigger: AGGACCTACGCTTCCTGGCTCAGAGTTCTCATGCTGCCCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR TCA 90 bp TGCCAGATACTGGGAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTaGCTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCTA +
Preference number: 1 (lower is better)
Translates to: CQILGAGEGYCRKQK*LKVYPGERQTAENL
Trigger: TAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTCCCAGTATCTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR GCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTaGAGAAAACCTAAGACAGAGCCTTTGTGTCAGGCTTCACTACGA +
Preference number: 1 (lower is better)
Translates to: QKAEVTQGIPRRKAN*RKPKTEPLCQASLR
Trigger: TCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CCA 90 bp GAAATCCACCTGCCTCTGCCTCCCACTAAAGGTGTGTGCCACCACTGCCCGGTCGGCCCAGCTGGAAGGTaGGGCGCCAGGCTTGGGCGG +
Preference number: 2 (lower is better)
Translates to: EIHLPLPPTKGVCHHCPVGPAGR*GARLGR
Trigger: CCGCCCAAGCCTGGCGCCCCACCTTCCAGCTGGGCC...GACCGGGCAGTGGTGGCACACACCTTTAGTGGGAGGCAGAGGCAGGTGGATTTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CAA 90 bp GCGATCACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTTGTaGGCAGCTATGATCTGCCGACGCCGACGCCGGCGGAAAAAGGTG +
Preference number: 2 (lower is better)
Translates to: AITAAIALLALTALL*AAMICRRRRRRKKV
Trigger: CACCTTTTTCCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTATGGCTGCTGTGATCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CAA 90 bp ACAGCGATCACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTaGTTGGCAGCTATGATCTGCCGACGCCGACGCCGGCGGAAAAAG +
Preference number: 2 (lower is better)
Translates to: TAITAAIALLALTAL*LAAMICRRRRRRKK
Trigger: CTTTTTCCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTATGGCTGCTGTGATCGCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CCA 90 bp GAGGACCTGCAGGTCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCCAGCTACACGCCCTGTaGGACATGAACCCCAGCATG +
Preference number: 2 (lower is better)
Translates to: EDLQVACQASGYPQPLVVQLHAL*DMNPSM
Trigger: CATGCTGGGGTTCATGTCCCACAGGGCGTGTAGCTG...GACCACCAGGGGCTGTGGGTAGCCTGATGCCTGACAGGCGACCTGCAGGTCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CCA 90 bp GAAATCCACCTGCCTCTGCCTCCCACTAAAGGTGTGTGCCACCACTGCCCGGTCGCTACCCACAGCCCCTaGTGGTCTGGAGAAAGGTGC +
Preference number: 2 (lower is better)
Translates to: EIHLPLPPTKGVCHHCPVATHSP*WSGERC
Trigger: GCACCTTTCTCCAGACCACCAGGGGCTGTGGGTAGC...GACCGGGCAGTGGTGGCACACACCTTTAGTGGGAGGCAGAGGCAGGTGGATTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CCA 90 bp TCCAGAGACAAGAAGATCACATGTGCAGAGCCCCCACGCCTGGCGCTACAGAGTCAGCCCCTGGTGGTCTaGAGAAAGGTGCCCCAGCCT +
Preference number: 2 (lower is better)
Translates to: SRDKKITCAEPPRLALQSQPLVV*RKVPQP
Trigger: AGGCTGGGGCACCTTTCTCCAGACCACCAGGGGCTG...ACTCTGTAGCGCCAGGCGTGGGGGCTCTGCACATGTGATCTTCTTGTCTCTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CCA 90 bp GATCACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTTGTTGGCAGCTATTGCCTGCTTAGGGCATaGGATGTGTCCAGGAAGCGT +
Preference number: 2 (lower is better)
Translates to: DHSSHSAAGAHRAVVGSYCLLRA*DVSRKR
Trigger: ACGCTTCCTGGACACATCCCATGCCCTAAGCAGGCA...ATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTATGGCTGCTGTGATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CCA 90 bp TCCAGAGACAAGAAGATCACATGTGCAGAGCCCCCACGCCTGGCGCTACAGAGTCGGCACCCGAGATACTaGCAGCGGCATGCTCTTCCT +
Preference number: 2 (lower is better)
Translates to: SRDKKITCAEPPRLALQSRHPRY*QRHALP
Trigger: AGGAAGAGCATGCCGCTGCCAGTATCTCGGGTGCCG...ACTCTGTAGCGCCAGGCGTGGGGGCTCTGCACATGTGATCTTCTTGTCTCTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CAA 90 bp AGCTCGAGGAGCTCCGTGATGACCATGGACACGAGATGTTCGTCATaGACCGATCCAAGCCCCTGTTCCCAGAGGTACTGCCTGAGGAGG +
Preference number: 2 (lower is better)
Translates to: SSRSSVMTMDTRCSS*TDPSPCSQRYCLRR
Trigger: CCTCCTCAGGCAGTACCTCTGGGAACAGGGGCTTGGATCGGTCAATGACGAACATCTCGTGTCCATGGTCATCACGGAGCTCCTCGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR TCA 90 bp CCACAGGGAAGGGGTGTACCACGGTACGTAGCTCAGCCTGTACCACAGAGTCCCGATACTGGGAGCAGGTaGAGGGTACTGCAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: PQGRGVPRYVAQPVPQSPDTGSR*RVLQKA
Trigger: TGCTTTCTGCAGTACCCTTCACCTGCTCCCAGTATC...GGGACTCTGTGGTACAGGCTGAGCTACGTACCGTGGTACACCCCTTCCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR-3UTR CCA 90 bp TGGGCATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTGGTGGCTTGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTG +
Preference number: 2 (lower is better)
Translates to: WASASWHSVSSRCSSVVAWKGVN*LPDRSL
Trigger: CAACGACCTGTCAGGCAACCAGTTGACACCCTTCCA...AGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CAA 90 bp GTGGTGGCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTGGTaGCCTGACAGGTCGTTGCCACTCAAATCCAACTTTTTGAGATGG +
Preference number: 2 (lower is better)
Translates to: VVATACSRPWKGVNW*PDRSLPLKSNFLRW
Trigger: CCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR-3UTR CCA 90 bp AGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCCAGGCTGCCAGATACTaGGAGCAGGTGAAGGGTACT +
Preference number: 2 (lower is better)
Translates to: RPQNALKQITLTSTSVHCQAARY*EQVKGT
Trigger: AGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTG...GCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CCA 90 bp CGTAGCTCAGCCTGTACCACAGAGTCCCGAAGCAGTTCTTTAAGTCCTGCCATACAGGCTGCCAGATACTaGGAGCAGGTGAAGGGTACT +
Preference number: 2 (lower is better)
Translates to: RSSACTTESRSSSLSPAIQAARY*EQVKGT
Trigger: AGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTG...TATGGCAGGACTTAAAGAACTGCTTCGGGACTCTGTGGTACAGGCTGAGCTACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR-3UTR CCA 90 bp TCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACACAAGTGCCCTTCACTGGCTaGGCTCTTGGATCAAAGAGG +
Preference number: 2 (lower is better)
Translates to: SVLLHYGSQWALLWRATQVPFTG*ALGSKR
Trigger: CCTCTTTGATCCAAGAGCCCAGCCAGTGAAGGGCAC...TTGTGTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CAA 90 bp AAGGCACCCTATTTGTCAACGATTATTCGGATGGGCCTTGCACCTTaGCACAGCTCGAGGAGCTCCGTGATGACCATGGACACGAGATGT +
Preference number: 2 (lower is better)
Translates to: KAPYLSTIIRMGLAP*HSSRSSVMTMDTRC
Trigger: ACATCTCGTGTCCATGGTCATCACGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACAAATAGGGTGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAGGCCTAGTGGGGTGCTaGGGGTTGGACCATGGATCA +
Preference number: 2 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKGLVGC*GLDHGS
Trigger: TGATCCATGGTCCAACCCCCAGCACCCCACTAGGCC...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR TCA 90 bp GCCACTCAAATCCAACTTTTTGAGATGGGCAGCATGAGAACTCTGAGCCAGGAATTGATCCAGCCTGCCTaGAAGGAGAGAAGACCCCAT +
Preference number: 2 (lower is better)
Translates to: ATQIQLFEMGSMRTLSQELIQPA*KERRPH
Trigger: ATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAA...TTCCTGGCTCAGAGTTCTCATGCTGCCCATCTCAAAAAGTTGGATTTGAGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR-3UTR GCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTGCCTGACAGGTCGTTaGCACTCAAATCCAACTTTT +
Preference number: 2 (lower is better)
Translates to: KCPEADHPDIYLSALHACCLTGR*HSNPTF
Trigger: AAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCA...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR-3UTR GCA 90 bp CTTGTCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACAGGAGAAAGGCAAACTaGAGAAAACCTAAGACAGAG +
Preference number: 2 (lower is better)
Translates to: LVCLASLWQPVGITLEGHRRKAN*RKPKTE
Trigger: CTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCT...GTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR TCA 90 bp GTACACAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTGCAGAAAGCAGAAGTaGCTCAAGGTATACCCAGGA +
Preference number: 2 (lower is better)
Translates to: VHNVRPQNALKQITLTSTCRKQK*LKVYPG
Trigger: TCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCA...GGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCAGGCTGCCAGATACTaGGAGCAGGTGAAGGGTACT +
Preference number: 2 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPQAARY*EQVKGT
Trigger: AGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTG...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CCA 90 bp AAAAAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCAGGCTGCCAGATACTaGGAGCAGGTGAAGGGTACT +
Preference number: 2 (lower is better)
Translates to: KKPINSHSRYYTFVPYPHQAARY*EQVKGT
Trigger: AGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTG...GTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR TCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTTGCAGAAAGCAGAAGTaGCTCAAGGTATACCCAGGA +
Preference number: 2 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPCRKQK*LKVYPG
Trigger: TCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCA...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR TCA 90 bp AAAAAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACGATACTGGGAGCAGGTaGAGGGTACTGCAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: KKPINSHSRYYTFVPYPHDTGSR*RVLQKA
Trigger: TGCTTTCTGCAGTACCCTTCACCTGCTCCCAGTATC...GTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR GCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCAGGAGAAAGGCAAACTaGAGAAAACCTAAGACAGAG +
Preference number: 2 (lower is better)
Translates to: KFTFQILHVCTLSTPSRARRKAN*RKPKTE
Trigger: CTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCT...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR TCA 90 bp ACTGTTAGGAGCTACAGCTTATGCATCTATTTAAGGAAACAAGGTACAAGTTCTCTGTGTGTAGAGATTTaGGGCTCTTCTAACTTGTCA +
Preference number: 2 (lower is better)
Translates to: TVRSYSLCIYLRKQGTSSLCVEI*GSSNLS
Trigger: TGACAAGTTAGAAGAGCCTCAAATCTCTACACACAG...AGAACTTGTACCTTGTTTCCTTAAATAGATGCATAAGCTGTAGCTCCTAACAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 72 bp CGCTGCTGGCGCTCACCGCGCTGTTGTTGGCAGCTATaGTCTGCCGACGCCGACGCCGGCGGAAAAAGGTGC +
Preference number: 3 (lower is better)
Translates to: RCWRSPRCCWQL*SADADAGGKRC
Trigger: GCACCTTTTTCCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp CTGGCGCTCACCGCGCTGTTGTTGGCAGCTATGATCTaGCGACGCCGACGCCGGCGGAAAAAGGTGCCTGCG +
Preference number: 3 (lower is better)
Translates to: LALTALLLAAMI*RRRRRRKKVPA
Trigger: CGCAGGCACCTTTTTCCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp GATCTGCCGACGCCGACGCCGGCGGAAAAAGGTGCCTaGGCCGTCGGGAGAAGGCACCCTATTTGTCAACGA +
Preference number: 3 (lower is better)
Translates to: DLPTPTPAEKGA*AVGRRHPICQR
Trigger: TCGTTGACAAATAGGGTGCCTTCTCCCGACGGCGCAGGCACCTTTTTCCGCCGGCGTCGGCGTCGGCAGATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp TCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTaGTCTGGAGAAAGGTGCCCCAGCCTCGCGATGGTA +
Preference number: 3 (lower is better)
Translates to: SPVRHQATHSPW*SGERCPSLAMV
Trigger: TACCATCGCGAGGCTGGGGCACCTTTCTCCAGACCACCAGGGGCTGTGGGTAGCCTGATGCCTGACAGGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp TGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCTaGAGAAAGGTGCCCCAGCCTCGCGATGGTAAGCCT +
Preference number: 3 (lower is better)
Translates to: CQASGYPQPLVV*RKVPQPRDGKP
Trigger: AGGCTTACCATCGCGAGGCTGGGGCACCTTTCTCCAGACCACCAGGGGCTGTGGGTAGCCTGATGCCTGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp GAGCTTGCGCGTACTAATGACGCAGGCACTGGGGATTaGCAGGTGTCGGTGCAGCTCCGCGCATGCTCAAAG +
Preference number: 3 (lower is better)
Translates to: ELARTNDAGTGD*QVSVQLRACSK
Trigger: CTTTGAGCATGCGCGGAGCTGCACCGACACCTGCCAATCCCCAGTGCCTGCGTCATTAGTACGCGCAAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 72 bp TCAGGGGGAGCCAGGCAAAACTGGACAGAGCTCATGTaGCGACAGGGTTTCAGTGCCGGGCTGAGGGATGCA +
Preference number: 3 (lower is better)
Translates to: SGGARQNWTELM*RQGFSAGLRDA
Trigger: TGCATCCCTCAGCCCGGCACTGAAACCCTGTCGTCACATGAGCTCTGTCCAGTTTTGCCTGGCTCCCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp GCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTGGTaGCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCA +
Preference number: 3 (lower is better)
Translates to: AGTQSAQDAAVW*LLPAADPGRVS
Trigger: TGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CCA 72 bp CAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTaGTGGCTACTGCCTGCAGCAGACCCTGGAAGGGTG +
Preference number: 3 (lower is better)
Translates to: QAGTQSAQDAAV*WLLPAADPGRV
Trigger: CACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR TCA 72 bp CATGCTCAAAGTAAAGTTGAAGCCAGGCTTCTCCACTaGGTGTGTTGGGGCGGCCTAGTGGGGTGCTGGGGG +
Preference number: 3 (lower is better)
Translates to: HAQSKVEARLLH*VCWGGLVGCWG
Trigger: CCCCCAGCACCCCACTAGGCCGCCCCAACACACTCAGTGGAGAAGCCTGGCTTCAACTTTACTTTGAGCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp AGAACAGGGGCGCACAGGCCTGAGATAGCAACAGGCTaGCAGATACTGGGAGCAGGTGAAGGGTACTGCAGA +
Preference number: 3 (lower is better)
Translates to: RTGAHRPEIATG*QILGAGEGYCR
Trigger: TCTGCAGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTGTTGCTATCTCAGGCCTGTGCGCCCCTGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR GCA 72 bp AATGCGAGGCCGCCAATGCAGGTGGCAAAGCTCGAGTaGCCTTTCATCTACTGGTCAACGCATCTCGGCAGC +
Preference number: 3 (lower is better)
Translates to: NARPPMQVAKLE*PFIYWSTHLGS
Trigger: GCTGCCGAGATGCGTTGACCAGTAGATGAAAGGGCACTCGAGCTTTGCCACCTGCATTGGCGGCCTCGCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp CAGAGCACATGGGCACGGCCCGAAGCTAACAGCAGTTaGTGTAACTCAGCTTCCACCCGGGCAAACTTCTCC +
Preference number: 3 (lower is better)
Translates to: QSTWARPEANSS*CNSASTRANFS
Trigger: GGAGAAGTTTGCCCGGGTGGAAGCTGAGTTACACCAACTGCTGTTAGCTTCGGGCCGTGCCCATGTGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR GCA 72 bp CTAATGACGCAGGCACTGGGGATTGGCAGGTGTCGGTaGAGCTCCGCGCATGCTCAAAGTAAAGTTGAAGCC +
Preference number: 3 (lower is better)
Translates to: LMTQALGIGRCR*SSAHAQSKVEA
Trigger: GGCTTCAACTTTACTTTGAGCATGCGCGGAGCTGCACCGACACCTGCCAATCCCCAGTGCCTGCGTCATTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp ACGGCTTCTGAGCTCCAGAGACAAGAAGATCACATGTaGAGAGCCCCCACGCCTGGCGCTACAGAGTCTACT +
Preference number: 3 (lower is better)
Translates to: TASELQRQEDHM*RAPTPGATEST
Trigger: AGTAGACTCTGTAGCGCCAGGCGTGGGGGCTCTGCACATGTGATCTTCTTGTCTCTGGAGCTCAGAAGCCGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp CTCAGTCAGCTCAAGATGCAGCAGTGTGGTGGCTACTaGCTGCAGCAGACCCTGGAAGGGTGTCAACTGGTT +
Preference number: 3 (lower is better)
Translates to: LSQLKMQQCGGY*LQQTLEGCQLV
Trigger: AACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CCA 72 bp GCTACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTGCCACTCAAATCCAAC +
Preference number: 3 (lower is better)
Translates to: ATACSRPWKGVN*LPDRSLPLKSN
Trigger: GTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CCA 72 bp GGGAGAAGGCACCCTATTTGTCAACGATTATTCGGATaGGCCTTGCACCTTTGCACAGCTCGAGGAGCTCCG +
Preference number: 3 (lower is better)
Translates to: GRRHPICQRLFG*ALHLCTARGAP
Trigger: CGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACAAATAGGGTGCCTTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp TACCTAGGCTCTATTCTGCCCTACACAGAGAACCCATaGCGTTGTGACTGTGCCCTTCACTGGCTGGGCTCT +
Preference number: 3 (lower is better)
Translates to: YLGSILPYTENP*RCDCALHWLGS
Trigger: AGAGCCCAGCCAGTGAAGGGCACAGTCACAACGCCATGGGTTCTCTGTGTAGGGCAGAATAGAGCCTAGGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 72 bp AACAAGTACATCAAACAGAACAGGGGCGCACAGGCCTaGGATAGCAACAGGCTGCCAGATACTGGGAGCAGG +
Preference number: 3 (lower is better)
Translates to: NKYIKQNRGAQA*DSNRLPDTGSR
Trigger: CCTGCTCCCAGTATCTGGCAGCCTGTTGCTATCTCAGGCCTGTGCGCCCCTGTTCTGTTTGATGTACTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR TCA 72 bp ATGGATCAGGTGTTTTCCTCCAGCTGCCAGCCCTGGTaGTCCACCATGGCTCTGGACAGTAAGAATAGTGGG +
Preference number: 3 (lower is better)
Translates to: MDQVFSSSCQPW*STMALDSKNSG
Trigger: CCCACTATTCTTACTGTCCAGAGCCATGGTGGATCACCAGGGCTGGCAGCTGGAGGAAAACACCTGATCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 72 bp CTCTATTCTGCCCTACACAGAGAACCCATGGCGTTGTaGCTGTGCCCTTCACTGGCTGGGCTCTTGGATCAA +
Preference number: 3 (lower is better)
Translates to: LYSALHREPMAL*LCPSLAGLLDQ
Trigger: TTGATCCAAGAGCCCAGCCAGTGAAGGGCACAGTCACAACGCCATGGGTTCTCTGTGTAGGGCAGAATAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp GGCACCCTATTTGTCAACGATTATTCGGATGGGCCTTaGACCTTTGCACAGCTCGAGGAGCTCCGTGATGAC +
Preference number: 3 (lower is better)
Translates to: GTLFVNDYSDGP*TFAQLEELRDD
Trigger: GTCATCACGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACAAATAGGGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp CTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTGGTTaGCTGACAGGTCGTTGCCACTCAAATCCAACTTTT +
Preference number: 3 (lower is better)
Translates to: LPAADPGRVSTG*LTGRCHSNPTF
Trigger: AAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR CCA 72 bp TTCCCCTTGTCTGTCTTGCTTCACTATGGCAGCCAGTaGGCATTACTTTGGAGGGCCACACAAGAACCTCGG +
Preference number: 3 (lower is better)
Translates to: FPLSVLLHYGSQ*ALLWRATQEPR
Trigger: CCGAGGTTCTTGTGTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGACAAGGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 72 bp GGCACTGGTTGTCCTAGAACGCTGTGTGTAGAGATTTaGGGCTCTTCTAACTTGTCATCAGGGGGAGCCAGG +
Preference number: 3 (lower is better)
Translates to: GTGCPRTLCVEI*GSSNLSSGGAR
Trigger: CCTGGCTCCCCCTGATGACAAGTTAGAAGAGCCTCAAATCTCTACACACAGCGTTCTAGGACAACCAGTGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR GCA 72 bp GGTGCCAGGCAGGGTACACAATGTAAGACCCCAAAATaGCCTGAAGCAGATCACCCTGACATCTACCTCAGT +
Preference number: 3 (lower is better)
Translates to: GARQGTQCKTPK*PEADHPDIYLS
Trigger: ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTACCCTGCCTGGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CAA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTACCTAAGACAGAGCCTTaGTGTCAGGCTTCACTACGA +
Preference number: 3 (lower is better)
Translates to: CPEADHPDIYLSALHACLPKTEP*CQASLR
Trigger: TCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGG...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CAA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCCCTAAGACAGAGCCTTaGTGTCAGGCTTCACTACGA +
Preference number: 3 (lower is better)
Translates to: KCPEADHPDIYLSALHACPKTEP*CQASLR
Trigger: TCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGG...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CAA 90 bp CTGTACCACAGAGTCCCGAAGCAGTTCTTTAAGTCCTGCCATAGACAAAGGGTTCCACGGAAGGCTGTCTaGAGTCCCCATGCACGTAGT +
Preference number: 3 (lower is better)
Translates to: LYHRVPKQFFKSCHRQRVPRKAV*SPHARS
Trigger: ACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGG...AACCCTTTGTCTATGGCAGGACTTAAAGAACTGCTTCGGGACTCTGTGGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR TCA 72 bp CTGGGAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTaGCTCAAGGTATACCCAGGAGAAAGGCAAACTGCA +
Preference number: 3 (lower is better)
Translates to: LGAGEGYCRKQK*LKVYPGERQTA
Trigger: TGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTCCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR TCA 72 bp GGATGCAGAGGCTTGCAAAGCCAGGACAGGAGAAGCTaGCGCCTTTTCAGGAACTGTCATCACAAACATTCC +
Preference number: 3 (lower is better)
Translates to: GCRGLQSQDRRS*RLFRNCHHKHS
Trigger: GGAATGTTTGTGATGACAGTTCCTGAAAAGGCGTCAGCTTCTCCTGTCCTGGCTTTGCAAGCCTCTGCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR TCA 72 bp TGCCTGACAGGTCGTTGCCACTCAAATCCAACTTTTTaGGATGGGCAGCATGAGAACTCTGAGCCAGGAAGC +
Preference number: 3 (lower is better)
Translates to: CLTGRCHSNPTF*DGQHENSEPGS
Trigger: GCTTCCTGGCTCAGAGTTCTCATGCTGCCCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR-3UTR CAA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTCCTAAGACAGAGCCTTaGTGTCAGGCTTCACTACGA +
Preference number: 3 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSPKTEP*CQASLR
Trigger: TCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGG...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR-3UTR CAA 90 bp ACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGCCTAAGACAGAGCCTTaGTGTCAGGCTTCACTACGA +
Preference number: 3 (lower is better)
Translates to: TAESRSDSRYTQEKGKLQPKTEP*CQASLR
Trigger: TCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGG...CTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR GCA 72 bp CTGTACCACAGAGTCCCGAAGCAGTTCTTTAAGTCCTaGCATAGACAAAGGGTTGCCATAGAGACCAAGGTA +
Preference number: 3 (lower is better)
Translates to: LYHRVPKQFFKS*HRQRVAIETKV
Trigger: TACCTTGGTCTCTATGGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTGCTTCGGGACTCTGTGGTACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
3UTR GCA 72 bp GAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTaGAGAAAACCTAAGACAGAGCCTTTGTGTCAGGCT +
Preference number: 3 (lower is better)
Translates to: EVTQGIPRRKAN*RKPKTEPLCQA
Trigger: AGCCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR CCA 72 bp TTCAGTGGAATCATTTATAGCGTGGGTCCTGCACATTaGGTAGGGATACAGAAGATAGTGCATGCTCCCAAG +
Preference number: 3 (lower is better)
Translates to: FSGIIYSVGPAH*VGIQKIVHAPK
Trigger: CTTGGGAGCATGCACTATCTTCTGTATCCCTACCCAATGTGCAGGACCCACGCTATAAATGATTCCACTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CCA 72 bp TTTCAGGAACTGTCATCACAAACATTCCTAGGAAGTTaGAGTGAGGGAAGAGGTGACAAGGGTTCTAGAACC +
Preference number: 3 (lower is better)
Translates to: FQELSSQTFLGS*SEGRGDKGSRT
Trigger: GGTTCTAGAACCCTTGTCACCTCTTCCCTCACTCCAACTTCCTAGGAATGTTTGTGATGACAGTTCCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR-3UTR CAA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCTAAGACAGAGCCTTaGTGTCAGGCTTCACTACGA +
Preference number: 3 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPPKTEP*CQASLR
Trigger: TCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGG...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
3UTR CAA 72 bp GCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTTGTaGGCAGCTATGATCTGCCGACGCCGACGCCGGCGG +
Preference number: 4 (lower is better)
Translates to: AAIALLALTALL*AAMICRRRRRR
Trigger: CCGCCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTATGGCTGC
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp GGGCGCCAGGCTTGGGCGGGCACGGCACCCGAGATACTGGCAGCGGCATGCTCTAGGCTAGCTAAGTGCTaGAAGCGGGCCACATGTGGG +
Preference number: 4 (lower is better)
Translates to: GRQAWAGTAPEILAAACSRLAKC*KRATCG
Trigger: CCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCT...AGAGCATGCCGCTGCCAGTATCTCGGGTGCCGTGCCCGCCCAAGCCTGGCGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
3UTR CAA 72 bp ACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTaGTTGGCAGCTATGATCTGCCGACGCCGACGCCGG +
Preference number: 4 (lower is better)
Translates to: TAAIALLALTAL*LAAMICRRRRR
Trigger: CCGGCGTCGGCGTCGGCAGATCATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTATGGCTGCTGT
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR CCA 90 bp GAAATCCACCTGCCTCTGCCTCCCACTAAAGGTGTGTGCCACCACTGCCCGGTCACAGCCGCAGCGGGCTaGCCACACTGCTTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: EIHLPLPPTKGVCHHCPVTAAAG*PHCFGG
Trigger: CCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGT...GACCGGGCAGTGGTGGCACACACCTTTAGTGGGAGGCAGAGGCAGGTGGATTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR GCA 90 bp GGGCGCCAGGCTTGGGCGGGCACGGCACCCGAGATACTGGCAGCGGCATGCTCTCTGTACAGTCCCACATaGTCATGGTTTCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: GRQAWAGTAPEILAAACSLYSPT*SWFQDP
Trigger: AGGATCCTGAAACCATGAGCATGTGGGACTGTACAG...AGAGCATGCCGCTGCCAGTATCTCGGGTGCCGTGCCCGCCCAAGCCTGGCGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCGCAGCTGCTGGAAGCTaGGCAGGGGAAAGGGCCACG +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACAAAGS*AGERAT
Trigger: CGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGC...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTAGCAGCTGCTGGAAGCTaGGCAGGGGAAAGGGCCACG +
Preference number: 4 (lower is better)
Translates to: CPEADHPDIYLSALHACLAAAGS*AGERAT
Trigger: CGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGC...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTATTCCACGGGGACTGGTaGCAGCCCTGGCTCGGCAGT +
Preference number: 4 (lower is better)
Translates to: CPEADHPDIYLSALHACLFHGDW*QPWLGS
Trigger: ACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAA...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACACAAGGGCAGGGCCTGGCATaGAGCTGGCTGGCACTGAAG +
Preference number: 4 (lower is better)
Translates to: SVLLHYGSQWALLWRATQGQGLA*SWLALK
Trigger: CTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCC...TTGTGTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR GCA 90 bp AACAGCTGGGCATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTGCACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: NSWASASWHSVSSRCSSVHSCSS*WKLSRG
Trigger: TCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTG...CACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCAGCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR GCA 90 bp GAGGACCTGCAGGTCGCCTGTCAGGCATCAGGCTACCCACAGCCCCTGGTGGTCCAGTTCTTTAAGTCCTaGCATAGACAAAGGGTTGCC +
Preference number: 4 (lower is better)
Translates to: EDLQVACQASGYPQPLVVQFFKS*HRQRVA
Trigger: GGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTG...GACCACCAGGGGCTGTGGGTAGCCTGATGCCTGACAGGCGACCTGCAGGTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR CCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCAGGGCTCGACTGCAGTaGGCACACTCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACRARLQ*AHSCSS
Trigger: GCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCT...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGACAGCCGCAGCGGGCTaGCCACACTGCTTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQETAAAG*PHCFGG
Trigger: CCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGT...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp GGTGTCGGTGCAGCTCCGCGCATGCTCAAAGTAAAGTaGAAGCCAGGCTTCTCCACTGAGTGTGTTGGGGCG +
Preference number: 4 (lower is better)
Translates to: GVGAAPRMLKVK*KPGFSTECVGA
Trigger: CGCCCCAACACACTCAGTGGAGAAGCCTGGCTTCAACTTTACTTTGAGCATGCGCGGAGCTGCACCGACACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp TGTCAACGATTATTCGGATGGGCCTTGCACCTTTGCACAGCTCGAGGAGCTCCGGGACCTGACGCGTGCTaGGGAACACAAGTGTGTGCA +
Preference number: 4 (lower is better)
Translates to: CQRLFGWALHLCTARGAPGPDAC*GTQVCA
Trigger: TGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCC...CGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp AACAGCTGGGCATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTGGGACCTGACGCGTGCTaGGGAACACAAGTGTGTGCA +
Preference number: 4 (lower is better)
Translates to: NSWASASWHSVSSRCSSVGPDAC*GTQVCA
Trigger: TGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCC...CACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCAGCTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR TCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGGCATGCTTTCTGTGCTaGGCCGCTCCTGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQEACFLC*AAPAAG
Trigger: CCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGC...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCTTCCACGGGGACTGGTaGCAGCCCTGGCTCGGCAGT +
Preference number: 4 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGFHGDW*QPWLGS
Trigger: ACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAA...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCGGGCAGGGCCTGGCATaGAGCTGGCTGGCACTGAAG +
Preference number: 4 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGGQGLA*SWLALK
Trigger: CTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCC...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CTTGTCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACGGAAAGGGCCACGTGTaGACCAGCTCACGCAGCACA +
Preference number: 4 (lower is better)
Translates to: LVCLASLWQPVGITLEGHGKGHV*TSSRST
Trigger: TGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCC...GTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGACAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR GCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCGGAAAGGGCCACGTGTaGACCAGCTCACGCAGCACA +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACGKGHV*TSSRST
Trigger: TGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCC...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCGGAAAGGGCCACGTGTaGACCAGCTCACGCAGCACA +
Preference number: 4 (lower is better)
Translates to: RPQNALKQITLTSTSVHCGKGHV*TSSRST
Trigger: TGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCC...GCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTAGGAAAGGGCCACGTGTaGACCAGCTCACGCAGCACA +
Preference number: 4 (lower is better)
Translates to: CPEADHPDIYLSALHACLGKGHV*TSSRST
Trigger: TGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCC...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TGGGCATCAGCAAGCTGGCACTCAGTCAGCTCAAGATGCAGCAGTGTGGTGGCTCCCAGGATCACAGCCTaGATGCTTTCTGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: WASASWHSVSSRCSSVVAPRITA*MLSVLS
Trigger: GCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGG...AGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR TCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAGCAGCTGCTGGAAGCTaGGCAGGGGAAAGGGCCACG +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRAAAGS*AGERAT
Trigger: CGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGC...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTAAGGCTAGCTAAGTGCTaGAAGCGGGCCACATGTGGG +
Preference number: 4 (lower is better)
Translates to: CPEADHPDIYLSALHACLRLAKC*KRATCG
Trigger: CCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCT...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCAGGGTGCTGAGCAGTTaGTCCAGCCTGCCTGAAAGG +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACRVLSS*SSLPER
Trigger: CCTTTCAGGCAGGCTGGATCAACTGCTCAGCACCCT...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGGGGCAGGGCCTGGCATaGAGCTGGCTGGCACTGAAG +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLGQGLA*SWLALK
Trigger: CTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCC...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCCAGTGTGGTGGCTACTaGCTGCAGCAGACCCTGGAA +
Preference number: 4 (lower is better)
Translates to: RPQNALKQITLTSTSVHCQCGGY*LQQTLE
Trigger: TTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTG...GCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTACAGCCGCAGCGGGCTaGCCACACTGCTTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSTAAAG*PHCFGG
Trigger: CCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGT...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp AGCTCCGTGATGACCATGGACACGAGATGTTCGTCATaGACCGATCCAAGCCCCTGTTCCCAGAGGTACTGC +
Preference number: 4 (lower is better)
Translates to: SSVMTMDTRCSS*TDPSPCSQRYC
Trigger: GCAGTACCTCTGGGAACAGGGGCTTGGATCGGTCAATGACGAACATCTCGTGTCCATGGTCATCACGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGCAGCTGCTGGAAGCTaGGCAGGGGAAAGGGCCACG +
Preference number: 4 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQAAAGS*AGERAT
Trigger: CGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGC...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACGCATGCTTTCTGTGCTaGGCCGCTCCTGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANACFLC*AAPAAG
Trigger: CCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGC...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp GCCACTCAAATCCAACTTTTTGAGATGGGCAGCATGAGAACTCTGAGCCAGGAAGCATGCTTTCTGTGCTaGGCCGCTCCTGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: ATQIQLFEMGSMRTLSQEACFLC*AAPAAG
Trigger: CCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGC...TTCCTGGCTCAGAGTTCTCATGCTGCCCATCTCAAAAAGTTGGATTTGAGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR TCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGGCATGCTTTCTGTGCTaGGCCGCTCCTGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLACFLC*AAPAAG
Trigger: CCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGC...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp TGTCAACGATTATTCGGATGGGCCTTGCACCTTTGCACAGCTCGAGGAGCTCCGTTGATCCAGCCTGCCTaGAAGGAGAGAAGACCCCAT +
Preference number: 4 (lower is better)
Translates to: CQRLFGWALHLCTARGAPLIQPA*KERRPH
Trigger: ATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAA...CGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR GCA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCCACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGHSCSS*WKLSRG
Trigger: TCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTG...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCCCCAGGATCACAGCCTaGATGCTTTCTGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: RPQNALKQITLTSTSVHCPRITA*MLSVLS
Trigger: GCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGG...GCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACCTRAA*QPLFLE
Trigger: CTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCA...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCGCAGTCCCACCCTGCTaGTGGGCAATGCACGTTCTG +
Preference number: 4 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGAVPPC*WAMHVL
Trigger: CAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGC...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACACAACAGTGTGGTGGCTACTaGCTGCAGCAGACCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SVLLHYGSQWALLWRATQQCGGY*LQQTLE
Trigger: TTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTG...TTGTGTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR CCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAGGGCTCGACTGCAGTaGGCACACTCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRRARLQ*AHSCSS
Trigger: GCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCT...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGAGGGCTCGACTGCAGTaGGCACACTCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLRARLQ*AHSCSS
Trigger: GCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCT...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTACTGGCCACACTGCTTTaGAGGGCCTCACGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: CPEADHPDIYLSALHACLLATLL*RASRRN
Trigger: ATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAG...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp ACTGCCTGCAGCAGACCCTGGAAGGGTGTCAACTGGTaGCCTGACAGGTCGTTGCCACTCAAATCCAACTTT +
Preference number: 4 (lower is better)
Translates to: TACSRPWKGVNW*PDRSLPLKSNF
Trigger: AAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR GCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCGGGCAGGGCCTGGCATaGAGCTGGCTGGCACTGAAG +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRAGQGLA*SWLALK
Trigger: CTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCC...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAGGGCAGGGCCTGGCATaGAGCTGGCTGGCACTGAAG +
Preference number: 4 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKGQGLA*SWLALK
Trigger: CTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCC...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTCACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSHSCSS*WKLSRG
Trigger: TCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTG...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GTACACAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCCACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: VHNVRPQNALKQITLTSTHSCSS*WKLSRG
Trigger: TCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTG...GGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGTGGGCACACTCCTaGAGCAGCTGCTGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLQWAHS*SSCWKL
Trigger: CAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTG...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGCAGTGGGCACACTCCTaGAGCAGCTGCTGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: YPGERQTAENLRQSLCVRQWAHS*SSCWKL
Trigger: CAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTG...CCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TCTGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTTGGAGGGCCACACAATGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: SVLLHYGSQWALLWRATQCTRAA*QPLFLE
Trigger: CTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCA...TTGTGTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR GCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACGCAGTCCCACCCTGCTaGTGGGCAATGCACGTTCTG +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANAVPPC*WAMHVL
Trigger: CAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGC...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGAGGGCTCGACTGCAGTaGGCACACTCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQRARLQ*AHSCSS
Trigger: GCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCT...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GTACACAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCGTCCCACCCTGCTGCTaGGCAATGCACGTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: VHNVRPQNALKQITLTSTVPPCC*AMHVLA
Trigger: AGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGAC...GGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGTCCCACCCTGCTGCTaGGCAATGCACGTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSVPPCC*AMHVLA
Trigger: AGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGAC...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCAAAGCGGGCCACATGTaGGATAATGACAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACKAGHM*DNDRQA
Trigger: GGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTT...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: NALKQITLTSTSVHCMPAWKGVN*LPDRSL
Trigger: CAACGACCTGTCAGGCAACCAGTTGACACCCTTCCA...AGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: KCPEADHPDIYLSALHACWKGVN*LPDRSL
Trigger: CAACGACCTGTCAGGCAACCAGTTGACACCCTTCCA...GCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGGACAGAGGCAGGTGGTaGCCAAGGAAGACCCTCATA +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQEDRGRW*PRKTLI
Trigger: TATGAGGGTCTTCCTTGGCCACCACCTGCCTCTGTC...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp TACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGGTGGTCCAGAGCACATaGGCACGGCCCGAAGCTAAC +
Preference number: 4 (lower is better)
Translates to: YPGERQTAENLRQSLCVRVVQST*ARPEAN
Trigger: GTTAGCTTCGGGCCGTGCCCATGTGCTCTGGACCAC...CCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAGTGGTCCAGAGCACATaGGCACGGCCCGAAGCTAAC +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRVVQST*ARPEAN
Trigger: GTTAGCTTCGGGCCGTGCCCATGTGCTCTGGACCAC...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp TGTCTTGCTTCACTATGGCAGCCAGTGGGCATTACTTaGGAGGGCCACACAAGAACCTCGGCCTTGATAAGG +
Preference number: 4 (lower is better)
Translates to: CLASLWQPVGIT*EGHTRTSALIR
Trigger: CCTTATCAAGGCCGAGGTTCTTGTGTGGCCCTCCAAAGTAATGCCCACTGGCTGCCATAGTGAAGCAAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp GTACACAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCGGACCTGACGCGTGCTaGGGAACACAAGTGTGTGCA +
Preference number: 4 (lower is better)
Translates to: VHNVRPQNALKQITLTSTGPDAC*GTQVCA
Trigger: TGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCC...GGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGCAGCTGCTGGAAGCTaGGCAGGGGAAAGGGCCACG +
Preference number: 4 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPAAAGS*AGERAT
Trigger: CGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGC...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCATTCCACGGGGACTGGTaGCAGCCCTGGCTCGGCAGT +
Preference number: 4 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPFHGDW*QPWLGS
Trigger: ACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAA...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACAGGCTAGCTAAGTGCTaGAAGCGGGCCACATGTGGG +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANRLAKC*KRATCG
Trigger: CCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCT...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp GTACACAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCCACGGAAGGCTGTCTTaGGTCCCCATGCACGTAGTG +
Preference number: 4 (lower is better)
Translates to: VHNVRPQNALKQITLTSTHGRLS*VPMHVV
Trigger: CACTACGTGCATGGGGACTCAAGACAGCCTTCCGTG...GGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp TACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGCACGGAAGGCTGTCTTaGGTCCCCATGCACGTAGTG +
Preference number: 4 (lower is better)
Translates to: YPGERQTAENLRQSLCVRHGRLS*VPMHVV
Trigger: CACTACGTGCATGGGGACTCAAGACAGCCTTCCGTG...CCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACCACGGAAGGCTGTCTTaGGTCCCCATGCACGTAGTG +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANHGRLS*VPMHVV
Trigger: CACTACGTGCATGGGGACTCAAGACAGCCTTCCGTG...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCCAGTGGGCACACTCCTaGAGCAGCTGCTGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTQWAHS*SSCWKL
Trigger: CAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTG...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGCAGTGGGCACACTCCTaGAGCAGCTGCTGGAAGCTG +
Preference number: 4 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQQWAHS*SSCWKL
Trigger: CAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTG...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCGCAGTCCCACCCTGCTaGTGGGCAATGCACGTTCTG +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTAVPPC*WAMHVL
Trigger: CAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGC...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGGTGCTGCACAAGGGCTaGGTGCCAGCCTCTGTTTCT +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLVLHKG*VPASVS
Trigger: AGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGCAC...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR CCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCGTCCCACCCTGCTGCTaGGCAATGCACGTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTVPPCC*AMHVLA
Trigger: AGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGAC...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGTGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQEWKGVN*LPDRSL
Trigger: CAACGACCTGTCAGGCAACCAGTTGACACCCTTCCA...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCGACAGAGGCAGGTGGTaGCCAAGGAAGACCCTCATA +
Preference number: 4 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGDRGRW*PRKTLI
Trigger: TATGAGGGTCTTCCTTGGCCACCACCTGCCTCTGTC...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCGGCCATAGATGTCTGTaGTCCAGAGCACATGGGCAC +
Preference number: 4 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGGHRCL*SRAHGH
Trigger: GTGCCCATGTGCTCTGGACCACAGACATCTATGGCC...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCGGACCTGACGCGTGCTaGGGAACACAAGTGTGTGCA +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTGPDAC*GTQVCA
Trigger: TGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCC...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp CCACAGATACATGCCGAGGCCTTTCCTAGAGTTCACTGCTGTTTTAATATTCTTGCATGCTTTCTGTGCTaGGCCGCTCCTGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: PQIHAEAFPRVHCCFNILACFLC*AAPAAG
Trigger: CCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGC...AAGAATATTAAAACAGCAGTGAACTCTAGGAAAGGCCTCGGCATGTATCTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp CATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGATTCCACGGGGACTGGTaGCAGCCCTGGCTCGGCAGT +
Preference number: 4 (lower is better)
Translates to: HKFTFQILHVCTLSTPSRFHGDW*QPWLGS
Trigger: ACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAA...TCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAGGAAAGGGCCACGTGTaGACCAGCTCACGCAGCACA +
Preference number: 4 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKGKGHV*TSSRST
Trigger: TGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCC...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGCCCAGGATCACAGCCTaGATGCTTTCTGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: YPGERQTAENLRQSLCVRPRITA*MLSVLS
Trigger: GCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGG...CCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp ACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGCCCAGGATCACAGCCTaGATGCTTTCTGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: TAESRSDSRYTQEKGKLQPRITA*MLSVLS
Trigger: GCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGG...CTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANCTRAA*QPLFLE
Trigger: CTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCA...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGAGAACCCGCAATGCATaGTTCCTGCACAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLRTRNA*FLHKGC
Trigger: GCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCT...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTAGAACCCGCAATGCATaGTTCCTGCACAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSRTRNA*FLHKGC
Trigger: GCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCT...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAGTGGTGGCTACTGCCTaGAGCAGACCCTGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKVVATA*SRPWKG
Trigger: ACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCAC...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCGTGGTGGCTACTGCCTaGAGCAGACCCTGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRAVVATA*SRPWKG
Trigger: ACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCAC...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCCAGTGTGGTGGCTACTaGCTGCAGCAGACCCTGGAA +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTQCGGY*LQQTLE
Trigger: TTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTG...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGTCAGTCAGCTCAAGATaGAGCAGTGTGGTGGCTACT +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQESVSSR*SSVVAT
Trigger: AGTAGCCACCACACTGCTGCATCTTGAGCTGACTGA...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGACTGGCCACACTGCTTTaGAGGGCCTCACGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRLATLL*RASRRN
Trigger: ATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAG...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTACAGCCGCAGCGGGCTaGCCACACTGCTTTGGAGGG +
Preference number: 4 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPTAAAG*PHCFGG
Trigger: CCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGT...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGACAGAGGCAGGTGGTaGCCAAGGAAGACCCTCATA +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSDRGRW*PRKTLI
Trigger: TATGAGGGTCTTCCTTGGCCACCACCTGCCTCTGTC...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAGTGGTCCAGAGCACATaGGCACGGCCCGAAGCTAAC +
Preference number: 4 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKVVQST*ARPEAN
Trigger: GTTAGCTTCGGGCCGTGCCCATGTGCTCTGGACCAC...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GTACACAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCGGCCATAGATGTCTGTaGTCCAGAGCACATGGGCAC +
Preference number: 4 (lower is better)
Translates to: VHNVRPQNALKQITLTSTGHRCL*SRAHGH
Trigger: GTGCCCATGTGCTCTGGACCACAGACATCTATGGCC...GGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp TATTTGTCAACGATTATTCGGATGGGCCTTGCACCTTaGCACAGCTCGAGGAGCTCCGTGATGACCATGGAC +
Preference number: 4 (lower is better)
Translates to: YLSTIIRMGLAP*HSSRSSVMTMD
Trigger: GTCCATGGTCATCACGGAGCTCCTCGAGCTGTGCAAAGGTGCAAGGCCCATCCGAATAATCGTTGACAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCAGGCTAGCTAAGTGCTaGAAGCGGGCCACATGTGGG +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRARLAKC*KRATCG
Trigger: CCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCT...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCCACGGAAGGCTGTCTTaGGTCCCCATGCACGTAGTG +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRAHGRLS*VPMHVV
Trigger: CACTACGTGCATGGGGACTCAAGACAGCCTTCCGTG...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGATTGATCCAGCCTGCCTaGAAGGAGAGAAGACCCCAT +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRLIQPA*KERRPH
Trigger: ATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAA...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTTTGATCCAGCCTGCCTaGAAGGAGAGAAGACCCCAT +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSLIQPA*KERRPH
Trigger: ATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAA...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCACACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGA +
Preference number: 4 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPHSCSS*WKLSRG
Trigger: TCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTG...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCTGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTCTRAA*QPLFLE
Trigger: CTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCA...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGCTGTACAGTCCCACATaGTCATGGTTTCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQELYSPT*SWFQDP
Trigger: AGGATCCTGAAACCATGAGCATGTGGGACTGTACAG...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCCAGTTCTTTAAGTCCTaGCATAGACAAAGGGTTGCC +
Preference number: 4 (lower is better)
Translates to: RPQNALKQITLTSTSVHCQFFKS*HRQRVA
Trigger: GGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTG...GCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTAGGGCTCGACTGCAGTaGGCACACTCCTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPRARLQ*AHSCSS
Trigger: GCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCT...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp ACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAGCGGGCCACATGTaGGATAATGACAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: TAESRSDSRYTQEKGKLQKAGHM*DNDRQA
Trigger: GGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTT...CTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAGCGGGCCACATGTaGGATAATGACAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRKAGHM*DNDRQA
Trigger: GGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTT...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGATGGAAGGGTGTCAACTaGTTGCCTGACAGGTCGTTG +
Preference number: 4 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRWKGVN*LPDRSL
Trigger: CAACGACCTGTCAGGCAACCAGTTGACACCCTTCCA...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGACAGAGGCAGGTGGTaGCCAAGGAAGACCCTCATA +
Preference number: 4 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQDRGRW*PRKTLI
Trigger: TATGAGGGTCTTCCTTGGCCACCACCTGCCTCTGTC...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAAGGGTGCTGAGCAGTTaGTCCAGCCTGCCTGAAAGG +
Preference number: 4 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPRVLSS*SSLPER
Trigger: CCTTTCAGGCAGGCTGGATCAACTGCTCAGCACCCT...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCAGAACCCGCAATGCATaGTTCCTGCACAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRARTRNA*FLHKGC
Trigger: GCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCT...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGTGCCTGACAGGTCGTTaGCACTCAAATCCAACTTTT +
Preference number: 4 (lower is better)
Translates to: EQVKGTAESRSDSRYTQECLTGR*HSNPTF
Trigger: AAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCA...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTGTGGTGGCTACTGCCTaGAGCAGACCCTGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPVVATA*SRPWKG
Trigger: ACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCAC...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGTCAGTCAGCTCAAGATaGAGCAGTGTGGTGGCTACT +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLSVSSR*SSVVAT
Trigger: AGTAGCCACCACACTGCTGCATCTTGAGCTGACTGA...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp TACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGGTCAGTCAGCTCAAGATaGAGCAGTGTGGTGGCTACT +
Preference number: 4 (lower is better)
Translates to: YPGERQTAENLRQSLCVRSVSSR*SSVVAT
Trigger: AGTAGCCACCACACTGCTGCATCTTGAGCTGACTGA...CCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTAGTCCCACATGCTCATaGTTTCAGGATCCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSSPTCS*FQDPAP
Trigger: TGGAGCAGGATCCTGAAACCATGAGCATGTGGGACT...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCCTGGCCACACTGCTTTaGAGGGCCTCACGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRALATLL*RASRRN
Trigger: ATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAG...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGAAAGCGGGCCACATGTaGGATAATGACAGACAGGCC +
Preference number: 4 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQKAGHM*DNDRQA
Trigger: GGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTT...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGTGGTCCAGAGCACATaGGCACGGCCCGAAGCTAAC +
Preference number: 4 (lower is better)
Translates to: HKFTFQILHVCTLSTPSRVVQST*ARPEAN
Trigger: GTTAGCTTCGGGCCGTGCCCATGTGCTCTGGACCAC...TCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp AGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTaGTGTCAGGCTTCACTACGACCCTGGAGATCAGAG +
Preference number: 4 (lower is better)
Translates to: RKANCRKPKTEP*CQASLRPWRSE
Trigger: CTCTGATCTCCAGGGTCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS-3UTR TCA 90 bp CATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGGACCTGACGCGTGCTaGGGAACACAAGTGTGTGCA +
Preference number: 4 (lower is better)
Translates to: HKFTFQILHVCTLSTPSRGPDAC*GTQVCA
Trigger: TGCACACACTTGTGTTCCTCAGCACGCGTCAGGTCC...TCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGAGCCTTGATCCAGCCTGCCTaGAAGGAGAGAAGACCCCAT +
Preference number: 4 (lower is better)
Translates to: KFTFQILHVCTLSTPSRALIQPA*KERRPH
Trigger: ATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAA...GGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTAGGGTGCTGAGCAGTTaGTCCAGCCTGCCTGAAAGG +
Preference number: 4 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPRVLSS*SSLPER
Trigger: CCTTTCAGGCAGGCTGGATCAACTGCTCAGCACCCT...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAAACTTCTCCTCATTaGTGGAGGCTTCCAGAAGGA +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLQTSPH*WRLPEG
Trigger: TCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTG...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR TCA 90 bp ACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGCAAACTTCTCCTCATTaGTGGAGGCTTCCAGAAGGA +
Preference number: 4 (lower is better)
Translates to: TAESRSDSRYTQEKGKLQQTSPH*WRLPEG
Trigger: TCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTG...CTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACCTGTACAGTCCCACATaGTCATGGTTTCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANLYSPT*SWFQDP
Trigger: AGGATCCTGAAACCATGAGCATGTGGGACTGTACAG...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCTGTACAGTCCCACATaGTCATGGTTTCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLLYSPT*SWFQDP
Trigger: AGGATCCTGAAACCATGAGCATGTGGGACTGTACAG...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCAGTCCCACATGCTCATaGTTTCAGGATCCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTSPTCS*FQDPAP
Trigger: TGGAGCAGGATCCTGAAACCATGAGCATGTGGGACT...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGGCCATAGATGTCTGTaGTCCAGAGCACATGGGCAC +
Preference number: 4 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPGHRCL*SRAHGH
Trigger: GTGCCCATGTGCTCTGGACCACAGACATCTATGGCC...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAGACCCAGGATCACAGCCTaGATGCTTTCTGTGCTGAGC +
Preference number: 4 (lower is better)
Translates to: HKFTFQILHVCTLSTPSRPRITA*MLSVLS
Trigger: GCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGG...TCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTTGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPCTRAA*QPLFLE
Trigger: CTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCA...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTTGCCTGACAGGTCGTTaGCACTCAAATCCAACTTTT +
Preference number: 4 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSCLTGR*HSNPTF
Trigger: AAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCA...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAATCAGTCAGCTCAAGATaGAGCAGTGTGGTGGCTACT +
Preference number: 4 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKSVSSR*SSVVAT
Trigger: AGTAGCCACCACACTGCTGCATCTTGAGCTGACTGA...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACCAGTTCTTTAAGTCCTaGCATAGACAAAGGGTTGCC +
Preference number: 4 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANQFFKS*HRQRVA
Trigger: GGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTG...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAAAAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACGTCCCACCCTGCTGCTaGGCAATGCACGTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: KKPINSHSRYYTFVPYPHVPPCC*AMHVLA
Trigger: AGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGAC...GTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGTGCCTGACAGGTCGTTaGCACTCAAATCCAACTTTT +
Preference number: 4 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQCLTGR*HSNPTF
Trigger: AAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCA...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp AAAAAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCAGTGTGGTGGCTACTaGCTGCAGCAGACCCTGGAA +
Preference number: 4 (lower is better)
Translates to: KKPINSHSRYYTFVPYPHQCGGY*LQQTLE
Trigger: TTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTG...GTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCCAGTTCTTTAAGTCCTaGCATAGACAAAGGGTTGCC +
Preference number: 4 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTQFFKS*HRQRVA
Trigger: GGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTG...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp CCACAGATACATGCCGAGGCCTTTCCTAGAGTTCACTGCTGTTTTAATATTCTTAGTCCCACATGCTCATaGTTTCAGGATCCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: PQIHAEAFPRVHCCFNILSPTCS*FQDPAP
Trigger: TGGAGCAGGATCCTGAAACCATGAGCATGTGGGACT...AAGAATATTAAAACAGCAGTGAACTCTAGGAAAGGCCTCGGCATGTATCTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR CCA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTAGTCCCACATGCTCATaGTTTCAGGATCCTGCTCCA +
Preference number: 4 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPSPTCS*FQDPAP
Trigger: TGGAGCAGGATCCTGAAACCATGAGCATGTGGGACT...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CCA 90 bp AAAAAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACGGCCATAGATGTCTGTaGTCCAGAGCACATGGGCAC +
Preference number: 4 (lower is better)
Translates to: KKPINSHSRYYTFVPYPHGHRCL*SRAHGH
Trigger: GTGCCCATGTGCTCTGGACCACAGACATCTATGGCC...GTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR GCA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCATGCCTGACAGGTCGTTaGCACTCAAATCCAACTTTT +
Preference number: 4 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPCLTGR*HSNPTF
Trigger: AAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCA...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
3UTR CAA 72 bp GAGTTTGGATTTATTAAAAGGGACGTTAAGATAGCTTaGAAACATGAGGGTAAGGACAGGTGCCGTGGTATG +
Preference number: 4 (lower is better)
Translates to: EFGFIKRDVKIA*KHEGKDRCRGM
Trigger: CATACCACGGCACCTGTCCTTACCCTCATGTTTCAAAGCTATCTTAACGTCCCTTTTAATAAATCCAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS-3UTR TCA 90 bp ACTGTTAGGAGCTACAGCTTATGCATCTATTTAAGGAAACAAGGTACAAGTTCTCAAACTTCTCCTCATTaGTGGAGGCTTCCAGAAGGA +
Preference number: 4 (lower is better)
Translates to: TVRSYSLCIYLRKQGTSSQTSPH*WRLPEG
Trigger: TCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTG...AGAACTTGTACCTTGTTTCCTTAAATAGATGCATAAGCTGTAGCTCCTAACAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS GCA 90 bp GAGCAGAGGGAAGAGTTCCCGGGGCAGCAGGGGCAGGGCCTGGCATaGAGCTGGCTGGCACTGAAGGACCTGACGCGTGCTGAGGAACAC +
Preference number: 5 (lower is better)
Translates to: EQREEFPGQQGQGLA*SWLALKDLTRAEEH
Trigger: GTGTTCCTCAGCACGCGTCAGGTCCTTCAGTGCCAGCCAGCTGCATGCCAGGCCCTGCCCCTGCTGCCCCGGGAACTCTTCCCTCTGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS GCA 90 bp CAGCCCGCAGGTCCCGGCAGCACAGCCGCAGCGGGCTGGCCACACTaGTTTGGAGGGCCTCACGAAGGAATGTGTACGAGGCCCGGTTTA +
Preference number: 5 (lower is better)
Translates to: QPAGPGSTAAAGWPH*FGGPHEGMCTRPGL
Trigger: TAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 90 bp CGCAGGTCCCGGCAGCACAGCCGCAGCGGGCTGGCCACACTGCTTTaGAGGGCCTCACGAAGGAATGTGTACGAGGCCCGGTTTACCCGA +
Preference number: 5 (lower is better)
Translates to: RRSRQHSRSGLATLL*RASRRNVYEARFTR
Trigger: TCGGGTAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 90 bp TGCAGCAGGGCTCGACTGCAGTGGGCACACTCCTGCAGCAGCTGCTaGAAGCTGAGCAGGGGAAAGGGCCACGTGTGCACCAGCTCACGC +
Preference number: 5 (lower is better)
Translates to: CSRARLQWAHSCSSC*KLSRGKGHVCTSSR
Trigger: GCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS CCA 90 bp GTAGATCCTCAGCCCGCAGGTCCCGGCAGCACAGCCGCAGCGGGCTaGCCACACTGCTTTGGAGGGCCTCACGAAGGAATGTGTACGAGG +
Preference number: 5 (lower is better)
Translates to: VDPQPAGPGSTAAAG*PHCFGGPHEGMCTR
Trigger: CCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTGAGGATCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS TCA 90 bp GGGCTCGACTGCAGTGGGCACACTCCTGCAGCAGCTGCTGGAAGCTaGGCAGGGGAAAGGGCCACGTGTGCACCAGCTCACGCAGCACAA +
Preference number: 5 (lower is better)
Translates to: GLDCSGHTPAAAAGS*AGERATCAPAHAAQ
Trigger: TTGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS TCA 90 bp GGCCCGGTTTACCCGAAGGTCTACTCGGATTTCCACGGGGACTGGTaGCAGCCCTGGCTCGGCAGTCCCACCCTGCTGCTGGGCAATGCA +
Preference number: 5 (lower is better)
Translates to: GPVYPKVYSDFHGDW*QPWLGSPTLLLGNA
Trigger: TGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAAATCCGAGTAGACCTTCGGGTAAACCGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 90 bp TCCTGCAGCAGGGCTCGACTGCAGTGGGCACACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGAAAGGGCCACGTGTGCACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: SCSRARLQWAHSCSS*WKLSRGKGHVCTSS
Trigger: TGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS GCA 90 bp AGCCCCAGGATCACAGCCTGCATGCTTTCTGTGCTGAGCCGCTCCTaGAGCAGGGCTCGACTGCAGTGGGCACACTCCTGCAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: SPRITACMLSVLSRS*SRARLQWAHSCSSC
Trigger: GCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS CCA 90 bp ACGGGGACTGGTGACAGCCCTGGCTCGGCAGTCCCACCCTGCTGCTaGGCAATGCACGTTCTGGCTACAGCGGCTGTACAGTCCCACATG +
Preference number: 5 (lower is better)
Translates to: TGTGDSPGSAVPPCC*AMHVLATAAVQSHM
Trigger: CATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCCCCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS TCA 90 bp TCCGAGCTGTCAGCCCCAGGATCACAGCCTGCATGCTTTCTGTGCTaGGCCGCTCCTGCAGCAGGGCTCGACTGCAGTGGGCACACTCCT +
Preference number: 5 (lower is better)
Translates to: SELSAPGSQPACFLC*AAPAAGLDCSGHTP
Trigger: AGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGATCCTGGGGCTGACAGCTCGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS GCA 90 bp CTGGTGACAGCCCTGGCTCGGCAGTCCCACCCTGCTGCTGGGCAATaGACGTTCTGGCTACAGCGGCTGTACAGTCCCACATGCTCATGG +
Preference number: 5 (lower is better)
Translates to: LVTALARQSHPAAGQ*TFWLQRLYSPTCSW
Trigger: CCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 90 bp ATTTCCACGGGGACTGGTGACAGCCCTGGCTCGGCAGTCCCACCCTaGTGCTGGGCAATGCACGTTCTGGCTACAGCGGCTGTACAGTCC +
Preference number: 5 (lower is better)
Translates to: ISTGTGDSPGSAVPP*CWAMHVLATAAVQS
Trigger: GGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 90 bp GACAGCCTGCATCTAAAAGCTGTAGCAGGGCCACAGTGTTACGCATaGGTAGATCCTCAGCCCGCAGGTCCCGGCAGCACAGCCGCAGCG +
Preference number: 5 (lower is better)
Translates to: DSLHLKAVAGPQCYA*VDPQPAGPGSTAAA
Trigger: CGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTGAGGATCTACCCATGCGTAACACTGTGGCCCTGCTACAGCTTTTAGATGCAGGCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GCCCTGGGCCTAGCAACGCAGACAGCGATCACAGCAGCCATAGCGCTGCTGGCGAAGGGTGTCAACTGGTaGCCTGACAGGTCGTTGCCA +
Preference number: 5 (lower is better)
Translates to: ALGLATQTAITAAIALLAKGVNW*PDRSLP
Trigger: TGGCAACGACCTGTCAGGCAACCAGTTGACACCCTT...CGCCAGCAGCGCTATGGCTGCTGTGATCGCTGTCTGCGTTGCTAGGCCCAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS CCA 90 bp GCCCTGGCTCGGCAGTCCCACCCTGCTGCTGGGCAATGCACGTTCTaGCTACAGCGGCTGTACAGTCCCACATGCTCATGGTTTCAGGAT +
Preference number: 5 (lower is better)
Translates to: ALARQSHPAAGQCTF*LQRLYSPTCSWFQD
Trigger: ATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GATCACAGCAGCCATAGCGCTGCTGGCGCTCACCGCGCTGTTGTTGGCAGCTATCCACGGAAGGCTGTCTaGAGTCCCCATGCACGTAGT +
Preference number: 5 (lower is better)
Translates to: DHSSHSAAGAHRAVVGSYPRKAV*SPHARS
Trigger: ACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGG...ATAGCTGCCAACAACAGCGCGGTGAGCGCCAGCAGCGCTATGGCTGCTGTGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127208.8
CDS GCA 90 bp CTCCACACCATCATCCAGGAGACCCGTCATGTCCAGAACCCGCAATaGATGCTTCCTGCACAAGGGCTGCGTGCCAGCCTCTGTTTCTTG +
Preference number: 5 (lower is better)
Translates to: LHTIIQETRHVQNPQ*MLPAQGLRASLCFL
Trigger: CAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCTGGACATGACGGGTCTCCTGGATGATGGTGTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 90 bp TCATGTCCAGAACCCGCAATGCATGCTTCCTGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAGTGTGAATCCGAGCTGTCAGCCCCA +
Preference number: 5 (lower is better)
Translates to: SCPEPAMHASCTRAA*QPLFLECESELSAP
Trigger: TGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCTGGACATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 90 bp CATCCAGGAGACCCGTCATGTCCAGAACCCGCAATGCATGCTTCCTaGACAAGGGCTGCGTGCCAGCCTCTGTTTCTTGAGTGTGAATCC +
Preference number: 5 (lower is better)
Translates to: HPGDPSCPEPAMHAS*TRAACQPLFLECES
Trigger: GGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCTGGACATGACGGGTCTCCTGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 90 bp GCTGGGCAATGCACGTTCTGGCTACAGCGGCTGTACAGTCCCACATaGTCATGGTTTCAGGATCCTGCTCCACACCATCATCCAGGAGAC +
Preference number: 5 (lower is better)
Translates to: AGQCTFWLQRLYSPT*SWFQDPAPHHHPGD
Trigger: GTCTCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 90 bp CAATGCACGTTCTGGCTACAGCGGCTGTACAGTCCCACATGCTCATaGTTTCAGGATCCTGCTCCACACCATCATCCAGGAGACCCGTCA +
Preference number: 5 (lower is better)
Translates to: QCTFWLQRLYSPTCS*FQDPAPHHHPGDPS
Trigger: TGACGGGTCTCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAGGGTGTCAACTGGTaGCCTGACAGGTCGTTGCCA +
Preference number: 5 (lower is better)
Translates to: EQVKGTAESRSDSRYTQEKGVNW*PDRSLP
Trigger: TGGCAACGACCTGTCAGGCAACCAGTTGACACCCTT...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp TGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTGCACTGCATGCCTGCTTAAGCACAAGCGTCTTTTaGTCCATGAAGGCCACCTTG +
Preference number: 5 (lower is better)
Translates to: CPEADHPDIYLSALHACLSTSVF*SMKATL
Trigger: CAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCT...TAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp AGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACCGCAAGCCCAGGTTATaGAAGCGCAGGTCTATCCGG +
Preference number: 5 (lower is better)
Translates to: RVLQKAEVTQGIPRRKANRKPRL*KRRSIR
Trigger: CCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCG...GTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp CAATGTAAGACCCCAAAATGCCCTGAAGCAGATCACCCTGACATCTACCTCAGTCCACGGAAGGCTGTCTaGAGTCCCCATGCACGTAGT +
Preference number: 5 (lower is better)
Translates to: QCKTPKCPEADHPDIYLSPRKAV*SPHARS
Trigger: ACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGG...ACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCCACGGAAGGCTGTCTaGAGTCCCCATGCACGTAGT +
Preference number: 5 (lower is better)
Translates to: GTAESRSDSRYTQEKGKLPRKAV*SPHARS
Trigger: ACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGG...CAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GAGCAGGTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAGCACAAGCGTCTTTTaGTCCATGAAGGCCACCTTG +
Preference number: 5 (lower is better)
Translates to: EQVKGTAESRSDSRYTQESTSVF*SMKATL
Trigger: CAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCT...CTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAACCCCACGGAAGGCTGTCTaGAGTCCCCATGCACGTAGT +
Preference number: 5 (lower is better)
Translates to: ESRSDSRYTQEKGKLQKTPRKAV*SPHARS
Trigger: ACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGG...GGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp ATACCCAGGAGAAAGGCAAACTGCAGAAAACCTAAGACAGAGCCTTTGTGTCAGAAGGGTGTCAACTGGTaGCCTGACAGGTCGTTGCCA +
Preference number: 5 (lower is better)
Translates to: IPRRKANCRKPKTEPLCQKGVNW*PDRSLP
Trigger: TGGCAACGACCTGTCAGGCAACCAGTTGACACCCTT...CTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp GTGAAGGGTACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCGCAAACTTCTCCTCATaGATGGAGGCTTCCAGAAGG +
Preference number: 5 (lower is better)
Translates to: VKGTAESRSDSRYTQEKGANFSS*MEASRR
Trigger: CCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGC...GCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp CAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAAAAAAGGGTGTCAACTGGTaGCCTGACAGGTCGTTGCCA +
Preference number: 5 (lower is better)
Translates to: QKAEVTQGIPRRKANCRKKGVNW*PDRSLP
Trigger: TGGCAACGACCTGTCAGGCAACCAGTTGACACCCTT...TTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp ACTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGGCAAACTTCTCCTCATaGATGGAGGCTTCCAGAAGG +
Preference number: 5 (lower is better)
Translates to: TAESRSDSRYTQEKGKLQANFSS*MEASRR
Trigger: CCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGC...CTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp CTGCAGAAAGCAGAAGTGACTCAAGGTATACCCAGGAGAAAGGCAAACTGCAGAGCAAACTTCTCCTCATaGATGGAGGCTTCCAGAAGG +
Preference number: 5 (lower is better)
Translates to: LQKAEVTQGIPRRKANCRANFSS*MEASRR
Trigger: CCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGC...TCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp CCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTCCAAGCACAAGCGTCTTTTaGTCCATGAAGGCCACCTTG +
Preference number: 5 (lower is better)
Translates to: PINSHSRYYTFVPYPHPPSTSVF*SMKATL
Trigger: CAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCT...TGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS-3UTR CAA 90 bp AAGCCCATAAATTCACATTCCAGATACTACACGTTTGTACCTTATCCACACCCTAGCACAAGCGTCTTTTaGTCCATGAAGGCCACCTTG +
Preference number: 5 (lower is better)
Translates to: KPINSHSRYYTFVPYPHPSTSVF*SMKATL
Trigger: CAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCT...AGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS CCA 72 bp CAGCCCGCAGGTCCCGGCAGCACAGCCGCAGCGGGCTaGCCACACTGCTTTGGAGGGCCTCACGAAGGAATG +
Preference number: 6 (lower is better)
Translates to: QPAGPGSTAAAG*PHCFGGPHEGM
Trigger: CATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 90 bp CCGCAGGTCCCGGCAGCACAGCCGCAGCGGGCTGGCCACACTGCTTaGGAGGGCCTCACGAAGGAATGTGTACGAGGCCCGGTTTACCCG +
Preference number: 6 (lower is better)
Translates to: PQVPAAQPQRAGHTA*EGLTKECVRGPVYP
Trigger: CGGGTAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 72 bp CGGCAGCACAGCCGCAGCGGGCTGGCCACACTGCTTTaGAGGGCCTCACGAAGGAATGTGTACGAGGCCCGG +
Preference number: 6 (lower is better)
Translates to: RQHSRSGLATLL*RASRRNVYEAR
Trigger: CCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 72 bp CCGGCAGCACAGCCGCAGCGGGCTGGCCACACTGCTTaGGAGGGCCTCACGAAGGAATGTGTACGAGGCCCG +
Preference number: 6 (lower is better)
Translates to: PAAQPQRAGHTA*EGLTKECVRGP
Trigger: CGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 72 bp GGTCCCGGCAGCACAGCCGCAGCGGGCTGGCCACACTaGTTTGGAGGGCCTCACGAAGGAATGTGTACGAGG +
Preference number: 6 (lower is better)
Translates to: GPGSTAAAGWPH*FGGPHEGMCTR
Trigger: CCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 72 bp AGGGCTCGACTGCAGTGGGCACACTCCTGCAGCAGCTaGTGGAAGCTGAGCAGGGGAAAGGGCCACGTGTGC +
Preference number: 6 (lower is better)
Translates to: RARLQWAHSCSS*WKLSRGKGHVC
Trigger: GCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGTCGAGCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS CCA 72 bp GGTGACAGCCCTGGCTCGGCAGTCCCACCCTGCTGCTaGGCAATGCACGTTCTGGCTACAGCGGCTGTACAG +
Preference number: 6 (lower is better)
Translates to: GDSPGSAVPPCC*AMHVLATAAVQ
Trigger: CTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 72 bp ATCACAGCCTGCATGCTTTCTGTGCTGAGCCGCTCCTaGAGCAGGGCTCGACTGCAGTGGGCACACTCCTGC +
Preference number: 6 (lower is better)
Translates to: ITACMLSVLSRS*SRARLQWAHSC
Trigger: GCAGGAGTGTGCCCACTGCAGTCGAGCCCTGCTGCAGGAGCGGCTCAGCACAGAAAGCATGCAGGCTGTGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS TCA 72 bp GCGAAAGTTGTCCTCCCCGTCCACGGAAGGCTGTCTTaGGTCCCCATGCACGTAGTGCAGCCTCAGGCTAGC +
Preference number: 6 (lower is better)
Translates to: AKVVLPVHGRLS*VPMHVVQPQAS
Trigger: GCTAGCCTGAGGCTGCACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGGACGGGGAGGACAACTTTCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 72 bp AGCTGCTGGAAGCTGAGCAGGGGAAAGGGCCACGTGTaGACCAGCTCACGCAGCACAAGCGTCTTTTTGTCC +
Preference number: 6 (lower is better)
Translates to: SCWKLSRGKGHV*TSSRSTSVFLS
Trigger: GGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCACACGTGGCCCTTTCCCCTGCTCAGCTTCCAGCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS GCA 72 bp TCCAGGAGACCCGTCATGTCCAGAACCCGCAATGCATaGTTCCTGCACAAGGGCTGCGTGCCAGCCTCTGTT +
Preference number: 6 (lower is better)
Translates to: SRRPVMSRTRNA*FLHKGCVPASV
Trigger: AACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCTGGACATGACGGGTCTCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 72 bp ATCATCCAGGAGACCCGTCATGTCCAGAACCCGCAATaGATGCTTCCTGCACAAGGGCTGCGTGCCAGCCTC +
Preference number: 6 (lower is better)
Translates to: IIQETRHVQNPQ*MLPAQGLRASL
Trigger: GAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTCTGGACATGACGGGTCTCCTGGATGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 72 bp CATCTAAAAGCTGTAGCAGGGCCACAGTGTTACGCATaGGTAGATCCTCAGCCCGCAGGTCCCGGCAGCACA +
Preference number: 6 (lower is better)
Translates to: HLKAVAGPQCYA*VDPQPAGPGST
Trigger: TGTGCTGCCGGGACCTGCGGGCTGAGGATCTACCCATGCGTAACACTGTGGCCCTGCTACAGCTTTTAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 72 bp CTTCCTGCACAAGGGCTGCGTGCCAGCCTCTGTTTCTaGAGTGTGAATCCGAGCTGTCAGCCCCAGGATCAC +
Preference number: 6 (lower is better)
Translates to: LPAQGLRASLCF*SVNPSCQPQDH
Trigger: GTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 72 bp GGGATAATGACAGACAGGCCACGCAAGCCCAGGTTATaGAAGCGCAGGTCTATCCGGCGCAGACAGCCTGCA +
Preference number: 6 (lower is better)
Translates to: GIMTDRPRKPRL*KRRSIRRRQPA
Trigger: TGCAGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 72 bp AGTGCTGCACAAGGGCTGCGTGCCAGCCTCTGTTTCTaGAGTGTGAATCCGAGCTGTCAGCCCCAGGATCAC +
Preference number: 6 (lower is better)
Translates to: SAAQGLRASLCF*SVNPSCQPQDH
Trigger: GTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142610.8
CDS CAA 90 bp CAATGCATGCTTCCTGCACAAGGGCTGCGTGCCAGCCTCTGTTTCTaGAGTGTGAATCCGAGCTGTCAGCCCCAGGATCACAGCCTGCAT +
Preference number: 6 (lower is better)
Translates to: QCMLPAQGLRASLCF*SVNPSCQPQDHSLH
Trigger: ATGCAGGCTGTGATCCTGGGGCTGACAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS GCA 72 bp GAACCCGCAATGCATGCTTCCTGCACAAGGGCTGCGTaGCAGCCTCTGTTTCTTGAGTGTGAATCCGAGCTG +
Preference number: 6 (lower is better)
Translates to: EPAMHASCTRAA*QPLFLECESEL
Trigger: CAGCTCGGATTCACACTCAAGAAACAGAGGCTGGCACGCAGCCCTTGTGCAGGAAGCATGCATTGCGGGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 90 bp GCCACATGTGGGATAATGACAGACAGGCCACGCAAGCCCAGGTTATaGAAGCGCAGGTCTATCCGGCGCAGACAGCCTGCATCTAAAAGC +
Preference number: 6 (lower is better)
Translates to: ATCGIMTDRPRKPRL*KRRSIRRRQPASKS
Trigger: GCTTTTAGATGCAGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CAA 72 bp CACGTGTGCACCAGCTCACGCAGCACAAGCGTCTTTTaGTCCATGAAGGCCACCTTGAAGAGCAGAGGGAAG +
Preference number: 6 (lower is better)
Translates to: HVCTSSRSTSVF*SMKATLKSRGK
Trigger: CTTCCCTCTGCTCTTCAAGGTGGCCTTCATGGACAAAAAGACGCTTGTGCTGCGTGAGCTGGTGCACACGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000142610.8
ENSMUST00000155735.2
CDS GCA 72 bp TGCACGTTCTGGCTACAGCGGCTGTACAGTCCCACATaGTCATGGTTTCAGGATCCTGCTCCACACCATCAT +
Preference number: 6 (lower is better)
Translates to: CTFWLQRLYSPT*SWFQDPAPHHH
Trigger: ATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2
CDS CCA 72 bp TTCTGGCTACAGCGGCTGTACAGTCCCACATGCTCATaGTTTCAGGATCCTGCTCCACACCATCATCCAGGA +
Preference number: 6 (lower is better)
Translates to: FWLQRLYSPTCS*FQDPAPHHHPG
Trigger: TCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036423.15
ENSMUST00000127208.8
ENSMUST00000136840.8
ENSMUST00000137649.8
ENSMUST00000155735.2