Pregenerated sensors for LRRC10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060187Ensembl transcript IDs: ENSMUST00000073834.5
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTTTCAAAATAGCTCGTGTGAAGGAACTGCTTCTGGCACAGGAGTaGCAGTCACCCTGGATTCCAGGCCAGCAACAGCACACACCTTCC | + |
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Preference number: 1 (lower is better) Translates to: CFKIARVKELLLAQE*QSPWIPGQQQHTPS Trigger: GGAAGGTGTGTGCTGTTGCTGGCCTGGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCTTCACACGAGCTATTTTGAAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CCA 90 bp | GGCTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTaGCTTTCTCTCCATCAGCCCTGGGATGAGCCAGGACCATCCCTT | + |
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Preference number: 1 (lower is better) Translates to: GWKCFLRPIPLQHLT*LSLHQPWDEPGPSL Trigger: AAGGGATGGTCCTGGCTCATCCCAGGGCTGATGGAGAGAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR-3UTR TCA 90 bp | CAGCCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGCAGTGGGGTAACCTTTaGATTGGCCTTCAACCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QPCDQLLLRGGRVLWLVLQWGNL*IGLQPQ Trigger: CTGAGGTTGAAGGCCAATTCAAAGGTTACCCCACTG...CAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR-3UTR GCA 90 bp | AGCTCGTGTGAAGGAACTGCTTCTGGCACAGGAGTGACAGTCACCCTGGATTCCCCCCCTAGGAAGAGGTaGTGGGGGCTGGAAATGTTT | + |
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Preference number: 2 (lower is better) Translates to: SSCEGTASGTGVTVTLDSPPRKR*WGLEMF Trigger: AAACATTTCCAGCCCCCAGCACCTCTTCCTAGGGGG...GGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCTTCACACGAGCT 56% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR-3UTR CCA 90 bp | CCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCAGAGGTGCTGGGGGCTaGAAATGTTTTCTTCGCCCT | + |
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Preference number: 2 (lower is better) Translates to: PCDQLLLRGGRVLWLVLFRGAGG*KCFLRP Trigger: AGGGCGAAGAAAACATTTCCAGCCCCCAGCACCTCT...GAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR-3UTR CCA 90 bp | GTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGCTAGATCTCTCCATCAGCCCTaGGATGAGCCAGGACCATCC | + |
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Preference number: 2 (lower is better) Translates to: VHWYYAEVLGKERGMRARSLHQP*DEPGPS Trigger: GGATGGTCCTGGCTCATCCCAGGGCTGATGGAGAGA...TCTAGCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CAA 90 bp | AGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCTTaGGTGTTTCAAAATAGCTCGTGTGAAGGAACTGCTTCTGGCACA | + |
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Preference number: 2 (lower is better) Translates to: SYSCVVEECCGWSCS*VFQNSSCEGTASGT Trigger: TGTGCCAGAAGCAGTTCCTTCACACGAGCTATTTTGAAACACCAAAGAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR-3UTR CAA 90 bp | CAGCCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGGGGGTAACCTTTGAATaGGCCTTCAACCTCAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: QPCDQLLLRGGRVLWLVLGVTFE*AFNLSC Trigger: ACAGCTGAGGTTGAAGGCCAATTCAAAGGTTACCCC...CAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR TCA 72 bp | ATAGCTCGTGTGAAGGAACTGCTTCTGGCACAGGAGTaGCAGTCACCCTGGATTCCAGGCCAGCAACAGCAC | + |
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Preference number: 3 (lower is better) Translates to: IARVKELLLAQE*QSPWIPGQQQH Trigger: GTGCTGTTGCTGGCCTGGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCTTCACACGAGCTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR GCA 72 bp | TTTGAAGCACTCACCAGCCTTGTGACCAGCTACTCCTaGGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: FEALTSLVTSYS*VVEECCGWSCS Trigger: AGAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGGCTGGTGAGTGCTTCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CCA 72 bp | ACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTaGTCTTGTTCTTTGGTGTTTCAAAATAGCTCGTGT | + |
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Preference number: 3 (lower is better) Translates to: TSYSCVVEECCG*SCSLVFQNSSC Trigger: ACACGAGCTATTTTGAAACACCAAAGAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CCA 72 bp | GCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCTTTaGTGTTTCAAAATAGCTCGTGTGAAGGAACTGCTT | + |
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Preference number: 3 (lower is better) Translates to: AWWKSAVAGLVL*CFKIARVKELL Trigger: AAGCAGTTCCTTCACACGAGCTATTTTGAAACACCAAAGAACAAGACCAGCCACAGCACTCTTCCACCACGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR GCA 72 bp | AGGAACCAAATTAGTAACAGCAGTACATTGGTACTATaGAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: RNQISNSSTLVL*RSSREGKRHES Trigger: GCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTACTGCTGTTACTAATTTGGTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CCA 72 bp | GAGCTAGAGAGAGCTAGAGACAGGCCACTGAGCAGCTaGTGGCGTTGTTTTCTTTATTTTAACAAATACAGT | + |
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Preference number: 3 (lower is better) Translates to: ELERARDRPLSS*WRCFLYFNKYS Trigger: ACTGTATTTGTTAAAATAAAGAAAACAACGCCACCAGCTGCTCAGTGGCCTGTCTCTAGCTCTCTCTAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CCA 72 bp | TCCCTTTCAGGAACCAAATTAGTAACAGCAGTACATTaGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: SLSGTKLVTAVH*YYAEVLGKERG Trigger: GCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTACTGCTGTTACTAATTTGGTTCCTGAAAGGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | CAGCCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGCAGGTTCTGCAGCTGTaGCAGGTCGGGAGGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: QPCDQLLLRGGRVLWLVLQVLQL*QVGRQA Trigger: AGCCTGCCTCCCGACCTGGCACAGCTGCAGAACCTG...CAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CCA 90 bp | CCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCGGGAAGCGACGCAGCTaGCTCCCGCTCAGATCCACC | + |
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Preference number: 4 (lower is better) Translates to: PCDQLLLRGGRVLWLVLFGKRRS*LPLRST Trigger: GGTGGATCTGAGCGGGAGCCAGCTGCGTCGCTTCCC...GAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | AGGAACTGCTTCTGGCACAGGAGTGACAGTCACCCTGGATTCCAGGCCAGCAACGGTTCTGGAGCAGGCTaGGCTCATCCGGGAGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: RNCFWHRSDSHPGFQASNGSGAG*AHPGGH Trigger: GTGACCTCCCGGATGAGCTCAGCCTGCTCCAGAACC...GTTGCTGGCCTGGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | CAGCCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGCACGGCGAACCCCTTTaGCCACCTTGGGGGCATTTC | + |
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Preference number: 4 (lower is better) Translates to: QPCDQLLLRGGRVLWLVLHGEPL*PPWGHF Trigger: GAAATGCCCCCAAGGTGGGCAAAGGGGTTCGCCGTG...CAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | AGCTCGTGTGAAGGAACTGCTTCTGGCACAGGAGTGACAGTCACCCTGGATTCCGCTTCACCAGCTCCGTaGAGGAGCACACGTGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SSCEGTASGTGVTVTLDSASPAP*RSTRAV Trigger: CACTGCACGTGTGCTCCTTCACGGAGCTGGTGAAGC...GGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCTTCACACGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | GAAGGAACTGCTTCTGGCACAGGAGTGACAGTCACCCTGGATTCCAGGCCAGCAGGAGGAGGTGGCTCTTaGTTCTCTTCCTTGGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: EGTASGTGVTVTLDSRPAGGGGS*FSSLAS Trigger: ACTGGCCAAGGAAGAGAATCAAGAGCCACCTCCTCC...TGCTGGCCTGGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CCA 90 bp | AGCTCGTGTGAAGGAACTGCTTCTGGCACAGGAGTGACAGTCACCCTGGATTCCAGGGTCCGTAGGTTCTaGAGCAGGCTGAGCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SSCEGTASGTGVTVTLDSRVRRF*SRLSSS Trigger: GGATGAGCTCAGCCTGCTCCAGAACCTACGGACCCT...GGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCTTCACACGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | CTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCTGCGTTGGAACCGGCATaGAGGGTTTTAAGGAGACTC | + |
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Preference number: 4 (lower is better) Translates to: LVTSYSCVVEECCGWSCSALEPA*RVLRRL Trigger: GAGTCTCCTTAAAACCCTGCATGCCGGTTCCAACGC...AGAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | CTGGGGGCTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCGAAGGTGGTTGTCGCTaGGGTAGAGCTTCACCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LGAGNVFFALFLYSISPGEGGCR*GRASPA Trigger: AGCTGGTGAAGCTCTACCTCAGCGACAACCACCTTC...GCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAGCCCCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | GTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGCTAGATCGGGAGGCAGGCTGTaGAGGTGGTTGTCGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: VHWYYAEVLGKERGMRARSGGRL*RWLSLR Trigger: CCTCAGCGACAACCACCTTCACAGCCTGCCTCCCGA...TCTAGCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | AGAGACAGGCCACTGAGCAGCTGGTGGCGTTGTTTTCTTTATTTTAACAAATACAGAGCCAGATGGTCCTaGGCTCGCGCAGGCGCCGGA | + |
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Preference number: 4 (lower is better) Translates to: RDRPLSSWWRCFLYFNKYRARWS*ARAGAG Trigger: TCCGGCGCCTGCGCGAGCTCAGGACCATCTGGCTCT...GTATTTGTTAAAATAAAGAAAACAACGCCACCAGCTGCTCAGTGGCCTGTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CCA 90 bp | TCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCTTTCTCTCCATCAGCCCTGCCCCTTTGCCCACCTTaGGGGCATTTCTGCAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: SSPYSFTASHLAFSPSALPLCPP*GHFCKD Trigger: ATCCTTGCAGAAATGCCCCCAAGGTGGGCAAAGGGG...CAGGGCTGATGGAGAGAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | GGGCTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCTTTCCCTCCAGAAAGGGCATaGGAAGCAGTACCGAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: GLEMFSSPYSFTASHLAFPPERA*EAVPRG Trigger: TCCCCTCGGTACTGCTTCGCATGCCCTTTCTGGAGG...GAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CCA 90 bp | CTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCTTTCTCTGGAGCACACGTGCAGTaGGAAGCGACGCAGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LEMFSSPYSFTASHLAFSGAHVQ*EATQLA Trigger: AGCCAGCTGCGTCGCTTCCCACTGCACGTGTGCTCC...AGAGAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CCA 90 bp | GTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGCTAGAGCAGACGTAGGGCGTTaGAACCGGCATGCAGGGTTT | + |
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Preference number: 4 (lower is better) Translates to: VHWYYAEVLGKERGMRARADVGR*NRHAGF Trigger: AAACCCTGCATGCCGGTTCCAACGCCCTACGTCTGC...TCTAGCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | AACAGCAGTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGTCAGCTAGCTGATTaGCGGAGAGCCAGATGGTCC | + |
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Preference number: 4 (lower is better) Translates to: NSSTLVLCRSSREGKRHESQLAD*RRARWS Trigger: GGACCATCTGGCTCTCCGGCAATCAGCTAGCTGACT...CTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTACTGCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CAA 72 bp | TGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCTTaGGTGTTTCAAAATAGCTCGTGTGAAGGAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: CVVEECCGWSCS*VFQNSSCEGTA Trigger: AGCAGTTCCTTCACACGAGCTATTTTGAAACACCAAAGAACAAGACCAGCCACAGCACTCTTCCACCACGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR TCA 90 bp | CTGGGGGCTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCGATTGTGGTCATAGATaGCCAGCTTCAGATTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LGAGNVFFALFLYSISPGDCGHR*PASDLS Trigger: TGACAAATCTGAAGCTGGTCATCTATGACCACAATC...GCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAGCCCCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | GGGCTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCTTTCCCTTGGGGGCATTTCTaGAAGGATTGTGGTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: GLEMFSSPYSFTASHLAFPWGHF*KDCGHR Trigger: TCTATGACCACAATCCTTGCAGAAATGCCCCCAAGG...GAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAGCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR GCA 90 bp | TGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCTTTCTCTCTGCCCAGGTAGAGGATaGAGAGCTGTTTCAAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: WKCFLRPIPLQHLTWLSLCPGRG*RAVSRY Trigger: GTACCTTGAAACAGCTCTGCATCCTCTACCTGGGCA...GAGAGAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| 3UTR CAA 72 bp | GTCCCTTTCAGGAACCAAATTAGTAACAGCAGTACATaGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGG | + |
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Preference number: 4 (lower is better) Translates to: VPFRNQISNSST*VLCRSSREGKR Trigger: CCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTACTGCTGTTACTAATTTGGTTCCTGAAAGGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CCA 90 bp | ACCAGCTCCGTGAAGGAGCACACGTGCAGTGGGAAGCGACGCAGCTaGCTCCCGCTCAGATCCACCATCCTGTCCAGGGGCATCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: TSSVKEHTCSGKRRS*LPLRSTILSRGISR Trigger: CCGGGAGATGCCCCTGGACAGGATGGTGGATCTGAGCGGGAGCCAGCTGCGTCGCTTCCCACTGCACGTGTGCTCCTTCACGGAGCTGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS GCA 90 bp | CGCCGGAGCTGGCCGGGTAGCAGACGTAGGGCGTTGGAACCGGCATaGAGGGTTTTAAGGAGACTCAGCTCACACACCACATCGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RRSWPGSRRRALEPA*RVLRRLSSHTTSGS Trigger: GCTGCCCGATGTGGTGTGTGAGCTGAGTCTCCTTAAAACCCTGCATGCCGGTTCCAACGCCCTACGTCTGCTACCCGGCCAGCTCCGGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CCA 90 bp | AGCCGGGTGAGGCAGTTGGATTCGAGCCACAGGGTCCGTAGGTTCTaGAGCAGGCTGAGCTCATCCGGGAGGTCACAGAGTTTGTTATTG | + |
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Preference number: 5 (lower is better) Translates to: SRVRQLDSSHRVRRF*SRLSSSGRSQSLLL Trigger: CAATAACAAACTCTGTGACCTCCCGGATGAGCTCAGCCTGCTCCAGAACCTACGGACCCTGTGGCTCGAATCCAACTGCCTCACCCGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS TCA 90 bp | GGCAGTTGGATTCGAGCCACAGGGTCCGTAGGTTCTGGAGCAGGCTaGGCTCATCCGGGAGGTCACAGAGTTTGTTATTGCCCAGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: GSWIRATGSVGSGAG*AHPGGHRVCYCPGR Trigger: TCTACCTGGGCAATAACAAACTCTGTGACCTCCCGGATGAGCTCAGCCTGCTCCAGAACCTACGGACCCTGTGGCTCGAATCCAACTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS GCA 90 bp | AGCGGATACTGTTCCGATCCACGTCGATCACCTCCAGAAAGGGCATaGGAAGCAGTACCGAGGGGAAGTCAGCTAGCTGATTGCCGGAGA | + |
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Preference number: 5 (lower is better) Translates to: SGYCSDPRRSPPERA*EAVPRGSQLADCRR Trigger: TCTCCGGCAATCAGCTAGCTGACTTCCCCTCGGTACTGCTTCGCATGCCCTTTCTGGAGGTGATCGACGTGGATCGGAACAGTATCCGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CAA 90 bp | CCTTGTGACCAGCTACTCCTGCGTGGTGGAAGAGTGCTGTGGCTGGTCTTGTTCACCCGGGGGAGAGCTTaGAAGTTGTTGAAATCCAAG | + |
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Preference number: 5 (lower is better) Translates to: PCDQLLLRGGRVLWLVLFTRGRA*KLLKSK Trigger: CTTGGATTTCAACAACTTCAAAGCTCTCCCCCGGGT...GAACAAGACCAGCCACAGCACTCTTCCACCACGCAGGAGTAGCTGGTCACAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS TCA 90 bp | CTTTGCCCACCTTGGGGGCATTTCTGCAAGGATTGTGGTCATAGATaGCCAGCTTCAGATTTGTCAAGTGGGCCAGGCTGGGGAAGTAGC | + |
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Preference number: 5 (lower is better) Translates to: LCPPWGHFCKDCGHR*PASDLSSGPGWGSS Trigger: GCTACTTCCCCAGCCTGGCCCACTTGACAAATCTGAAGCTGGTCATCTATGACCACAATCCTTGCAGAAATGCCCCCAAGGTGGGCAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CAA 90 bp | GTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGCTAGAAGCCGGGTGAGGCAGTaGGATTCGAGCCACAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: VHWYYAEVLGKERGMRARSRVRQ*DSSHRV Trigger: GACCCTGTGGCTCGAATCCAACTGCCTCACCCGGCT...TCTAGCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CAA 90 bp | AGGAACTGCTTCTGGCACAGGAGTGACAGTCACCCTGGATTCCAGGCCAGCAACAGAGCTTTGAAGTTGTaGAAATCCAAGGCCAGGATC | + |
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Preference number: 5 (lower is better) Translates to: RNCFWHRSDSHPGFQASNRALKL*KSKARI Trigger: GATCCTGGCCTTGGATTTCAACAACTTCAAAGCTCT...GTTGCTGGCCTGGAATCCAGGGTGACTGTCACTCCTGTGCCAGAAGCAGTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CAA 90 bp | GTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGCTAGAAGCAGACGTAGGGCGTaGGAACCGGCATGCAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: VHWYYAEVLGKERGMRARSRRRA*EPACRV Trigger: AACCCTGCATGCCGGTTCCAACGCCCTACGTCTGCT...TCTAGCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CAA 90 bp | GTACATTGGTACTATGCAGAAGTTCTCGGGAAGGAAAGAGGCATGAGAGCTAGAACCCCTTTGCCCACCTaGGGGGCATTTCTGCAAGGA | + |
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Preference number: 5 (lower is better) Translates to: VHWYYAEVLGKERGMRARTPLPT*GAFLQG Trigger: TCCTTGCAGAAATGCCCCCAAGGTGGGCAAAGGGGT...TCTAGCTCTCATGCCTCTTTCCTTCCCGAGAACTTCTGCATAGTACCAATGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS-3UTR CAA 90 bp | GGGCTGGAAATGTTTTCTTCGCCCTATTCCTTTACAGCATCTCACCTGGCTTTCGGGAGAGCTTTGAAGTaGTTGAAATCCAAGGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: GLEMFSSPYSFTASHLAFGRALK*LKSKAR Trigger: CCTGGCCTTGGATTTCAACAACTTCAAAGCTCTCCC...GAAAGCCAGGTGAGATGCTGTAAAGGAATAGGGCGAAGAAAACATTTCCAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CCA 72 bp | GTGAAGGAGCACACGTGCAGTGGGAAGCGACGCAGCTaGCTCCCGCTCAGATCCACCATCCTGTCCAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: VKEHTCSGKRRS*LPLRSTILSRG Trigger: GCCCCTGGACAGGATGGTGGATCTGAGCGGGAGCCAGCTGCGTCGCTTCCCACTGCACGTGTGCTCCTTCAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 72 bp | AGGCGCCGGAGCTGGCCGGGTAGCAGACGTAGGGCGTaGGAACCGGCATGCAGGGTTTTAAGGAGACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RRRSWPGSRRRA*EPACRVLRRLS Trigger: GCTGAGTCTCCTTAAAACCCTGCATGCCGGTTCCAACGCCCTACGTCTGCTACCCGGCCAGCTCCGGCGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 90 bp | AGGAGACTCAGCTCACACACCACATCGGGCAGCCGGGTGAGGCAGTaGGATTCGAGCCACAGGGTCCGTAGGTTCTGGAGCAGGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: RRLSSHTTSGSRVRQ*DSSHRVRRFWSRLS Trigger: GCTCAGCCTGCTCCAGAACCTACGGACCCTGTGGCTCGAATCCAACTGCCTCACCCGGCTGCCCGATGTGGTGTGTGAGCTGAGTCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS TCA 72 bp | GGAGACTCAGCTCACACACCACATCGGGCAGCCGGGTaGGGCAGTTGGATTCGAGCCACAGGGTCCGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: GDSAHTPHRAAG*GSWIRATGSVG Trigger: ACCTACGGACCCTGTGGCTCGAATCCAACTGCCTCACCCGGCTGCCCGATGTGGTGTGTGAGCTGAGTCTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 72 bp | AGCTCACACACCACATCGGGCAGCCGGGTGAGGCAGTaGGATTCGAGCCACAGGGTCCGTAGGTTCTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SSHTTSGSRVRQ*DSSHRVRRFWS Trigger: GCTCCAGAACCTACGGACCCTGTGGCTCGAATCCAACTGCCTCACCCGGCTGCCCGATGTGGTGTGTGAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS GCA 72 bp | GGGAGGAGGTGGCTCTTGATTCTCTTCCTTGGCCAGTaGGTACCGCCTAGCTTTTCTGGGGTCAGGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: GRRWLLILFLGQ*VPPSFSGVRLW Trigger: CCAGAGCCTGACCCCAGAAAAGCTAGGCGGTACGCACTGGCCAAGGAAGAGAATCAAGAGCCACCTCCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CCA 72 bp | AGGCAGTTGGATTCGAGCCACAGGGTCCGTAGGTTCTaGAGCAGGCTGAGCTCATCCGGGAGGTCACAGAGT | + |
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Preference number: 6 (lower is better) Translates to: RQLDSSHRVRRF*SRLSSSGRSQS Trigger: ACTCTGTGACCTCCCGGATGAGCTCAGCCTGCTCCAGAACCTACGGACCCTGTGGCTCGAATCCAACTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 72 bp | GTCTCCTCTGCCCATCTCCCAACACGGCGAACCCCTTaGCCCACCTTGGGGGCATTTCTGCAAGGATTGTGG | + |
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Preference number: 6 (lower is better) Translates to: VSSAHLPTRRTP*PTLGAFLQGLW Trigger: CCACAATCCTTGCAGAAATGCCCCCAAGGTGGGCAAAGGGGTTCGCCGTGTTGGGAGATGGGCAGAGGAGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS GCA 72 bp | TGGCCGGGTAGCAGACGTAGGGCGTTGGAACCGGCATaGAGGGTTTTAAGGAGACTCAGCTCACACACCACA | + |
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Preference number: 6 (lower is better) Translates to: WPGSRRRALEPA*RVLRRLSSHTT Trigger: TGTGGTGTGTGAGCTGAGTCTCCTTAAAACCCTGCATGCCGGTTCCAACGCCCTACGTCTGCTACCCGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS GCA 72 bp | TCTCCTCTGCCCATCTCCCAACACGGCGAACCCCTTTaGCCACCTTGGGGGCATTTCTGCAAGGATTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: SPLPISQHGEPL*PPWGHFCKDCG Trigger: ACCACAATCCTTGCAGAAATGCCCCCAAGGTGGGCAAAGGGGTTCGCCGTGTTGGGAGATGGGCAGAGGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS TCA 72 bp | ATTCGAGCCACAGGGTCCGTAGGTTCTGGAGCAGGCTaGGCTCATCCGGGAGGTCACAGAGTTTGTTATTGC | + |
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Preference number: 6 (lower is better) Translates to: IRATGSVGSGAG*AHPGGHRVCYC Trigger: GCAATAACAAACTCTGTGACCTCCCGGATGAGCTCAGCCTGCTCCAGAACCTACGGACCCTGTGGCTCGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 90 bp | AGCTGTTTCAAGGTACACACCACCCGGGGGAGAGCTTTGAAGTTGTaGAAATCCAAGGCCAGGATCTGCAGGTTCTGCAGCTGTGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SCFKVHTTRGRALKL*KSKARICRFCSCAR Trigger: CCTGGCACAGCTGCAGAACCTGCAGATCCTGGCCTTGGATTTCAACAACTTCAAAGCTCTCCCCCGGGTGGTGTGTACCTTGAAACAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 90 bp | CAGAGCTGTTTCAAGGTACACACCACCCGGGGGAGAGCTTTGAAGTaGTTGAAATCCAAGGCCAGGATCTGCAGGTTCTGCAGCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: QSCFKVHTTRGRALK*LKSKARICRFCSCA Trigger: GGCACAGCTGCAGAACCTGCAGATCCTGGCCTTGGATTTCAACAACTTCAAAGCTCTCCCCCGGGTGGTGTGTACCTTGAAACAGCTCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS GCA 72 bp | GGAGGTCACAGAGTTTGTTATTGCCCAGGTAGAGGATaGAGAGCTGTTTCAAGGTACACACCACCCGGGGGA | + |
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Preference number: 6 (lower is better) Translates to: GGHRVCYCPGRG*RAVSRYTPPGG Trigger: TCCCCCGGGTGGTGTGTACCTTGAAACAGCTCTGCATCCTCTACCTGGGCAATAACAAACTCTGTGACCTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 90 bp | AGGATGCAGAGCTGTTTCAAGGTACACACCACCCGGGGGAGAGCTTaGAAGTTGTTGAAATCCAAGGCCAGGATCTGCAGGTTCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RMQSCFKVHTTRGRA*KLLKSKARICRFCS Trigger: GCTGCAGAACCTGCAGATCCTGGCCTTGGATTTCAACAACTTCAAAGCTCTCCCCCGGGTGGTGTGTACCTTGAAACAGCTCTGCATCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS TCA 72 bp | CCTTGGGGGCATTTCTGCAAGGATTGTGGTCATAGATaGCCAGCTTCAGATTTGTCAAGTGGGCCAGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PWGHFCKDCGHR*PASDLSSGPGW Trigger: CCAGCCTGGCCCACTTGACAAATCTGAAGCTGGTCATCTATGACCACAATCCTTGCAGAAATGCCCCCAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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| CDS CAA 72 bp | TTCAAGGTACACACCACCCGGGGGAGAGCTTTGAAGTaGTTGAAATCCAAGGCCAGGATCTGCAGGTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: FKVHTTRGRALK*LKSKARICRFC Trigger: GCAGAACCTGCAGATCCTGGCCTTGGATTTCAACAACTTCAAAGCTCTCCCCCGGGTGGTGTGTACCTTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073834.5 |
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