Pregenerated sensors for LRR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034883Ensembl transcript IDs: ENSMUST00000110621.3, ENSMUST00000222520.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCACAGTGTGCGCAACAGAGTGTAGGTTCATTGTAGTCGTTCCTTaGATGAAAGATTGGAGACAAAATCTTCCACAGACACAGGTTTTG | + |
|
Preference number: 1 (lower is better) Translates to: TTVCATECRFIVVVP*MKDWRQNLPQTQVL Trigger: CAAAACCTGTGTCTGTGGAAGATTTTGTCTCCAATCTTTCATTCAAGGAACGACTACAATGAACCTACACTCTGTTGCGCACACTGTGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| 3UTR GCA 72 bp | TCCGTTCTTCCCATACTATCTACTAAGACCACAGTGTaGGCAACAGAGTGTAGGTTCATTGTAGTCGTTCCT | + |
|
Preference number: 3 (lower is better) Translates to: SVLPILSTKTTV*ATECRFIVVVP Trigger: AGGAACGACTACAATGAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAGTATGGGAAGAACGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| 3UTR TCA 72 bp | TGCGCAACAGAGTGTAGGTTCATTGTAGTCGTTCCTTaGATGAAAGATTGGAGACAAAATCTTCCACAGACA | + |
|
Preference number: 3 (lower is better) Translates to: CATECRFIVVVP*MKDWRQNLPQT Trigger: TGTCTGTGGAAGATTTTGTCTCCAATCTTTCATTCAAGGAACGACTACAATGAACCTACACTCTGTTGCGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| 3UTR-3UTR CAA 90 bp | TTAGAGAACAAAAGTAAGAGACAACAGGAGCTTCCGTTCTTCCCATACTATCTACATTGTAGTCGTTCCTaGAATGAAAGATTGGAGACA | + |
|
Preference number: 3 (lower is better) Translates to: LENKSKRQQELPFFPYYLHCSRS*NERLET Trigger: TGTCTCCAATCTTTCATTCAAGGAACGACTACAATG...TAGATAGTATGGGAAGAACGGAAGCTCCTGTTGTCTCTTACTTTTGTTCTCTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| 3UTR CCA 72 bp | AAGATTGGAGACAAAATCTTCCACAGACACAGGTTTTaGCAGTATCCAAATCTTGACAAAGATGGTAAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: KIGDKIFHRHRF*QYPNLDKDGKE Trigger: TTCCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGTGGAAGATTTTGTCTCCAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR CCA 90 bp | TCCGTTCTTCCCATACTATCTACTAAGACCACAGTGTGCGCAACAGAGTGTAGGTTCCTGCCCGGGGCCTaGCACAGGCTCACCACCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SVLPILSTKTTVCATECRFLPGA*HRLTTA Trigger: AGCGGTGGTGAGCCTGTGCCAGGCCCCGGGCAGGAA...CCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAGTATGGGAAGAACGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR GCA 90 bp | GTTCTTCCCATACTATCTACTAAGACCACAGTGTGCGCAACAGAGTGTAGGTTCGCTGCAGCTCATTCCTaGCCGGGGCCTGGCACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: VLPILSTKTTVCATECRFAAAHS*PGPGTG Trigger: GCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGC...GAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAGTATGGGAAGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR GCA 90 bp | GTTCTTCCCATACTATCTACTAAGACCACAGTGTGCGCAACAGAGTGTAGGTTCGTGGCCGCCCGGCTCTaGTCTTGCCTCAGGCTGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VLPILSTKTTVCATECRFVAARL*SCLRLQ Trigger: CTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCAC...GAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAGTATGGGAAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR GCA 90 bp | CTATCTACTAAGACCACAGTGTGCGCAACAGAGTGTAGGTTCATTGTAGTCGTTGCCCGGCTCTGCTCTTaGCTCAGGCTGCAGCTCATT | + |
|
Preference number: 4 (lower is better) Translates to: LSTKTTVCATECRFIVVVARLCS*LRLQLI Trigger: AATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGC...AACGACTACAATGAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR CCA 90 bp | CTATCTACTAAGACCACAGTGTGCGCAACAGAGTGTAGGTTCATTGTAGTCGTTGCCTGTCCTTCATGGTaGAGACCAGCAGGCAGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: LSTKTTVCATECRFIVVVACPSW*RPAGRR Trigger: ACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGC...AACGACTACAATGAACCTACACTCTGTTGCGCACACTGTGGTCTTAGTAGATAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR CCA 90 bp | ACAGACACAGGTTTTGGCAGTATCCAAATCTTGACAAAGATGGTAAGGAATTATCCTTTAGCCGGACAGTaGCTTTCCCCTCATCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: TDTGFGSIQILTKMVRNYPLAGQ*LSPHPQ Trigger: TTGTGGATGAGGGGAAAGCCACTGTCCGGCTAAAGG...ATAATTCCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR TCA 90 bp | ACAGACACAGGTTTTGGCAGTATCCAAATCTTGACAAAGATGGTAAGGAATTATCATCCACAAATTTGGTaGAGAGCTGCTCAATGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TDTGFGSIQILTKMVRNYHPQIW*RAAQCS Trigger: AGAACATTGAGCAGCTCTTCACCAAATTTGTGGATG...ATAATTCCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS-3UTR GCA 90 bp | ACAGACACAGGTTTTGGCAGTATCCAAATCTTGACAAAGATGGTAAGGAATTATAATTTGGTGAAGAGCTaGTCAATGTTCTCTCTTAGC | + |
|
Preference number: 4 (lower is better) Translates to: TDTGFGSIQILTKMVRNYNLVKS*SMFSLS Trigger: GCTAAGAGAGAACATTGAGCAGCTCTTCACCAAATT...ATAATTCCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS GCA 90 bp | ACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTTGCCTCAGGCTaGAGCTCATTCCTGCCCGGGGCCTGGCACAGGCTCACCACCGCT | + |
|
Preference number: 5 (lower is better) Translates to: TSRQAWPPGSALASG*SSFLPGAWHRLTTA Trigger: AGCGGTGGTGAGCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS GCA 90 bp | CATGGTGGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTTaGCTCAGGCTGCAGCTCATTCCTGCCCGGGGCCTGGCACAGGCT | + |
|
Preference number: 5 (lower is better) Translates to: HGGDQQAGVAARLCS*LRLQLIPARGLAQA Trigger: AGCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS GCA 90 bp | GTCCTTCATGGTGGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTaGTCTTGCCTCAGGCTGCAGCTCATTCCTGCCCGGGGCCTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: VLHGGDQQAGVAARL*SCLRLQLIPARGLA Trigger: TGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS TCA 90 bp | CCTGGCACAGGCTCACCACCGCTCGCACGCCCTTGCCTCGGCTCTTaGGCCCTAAGGTTGGCAAATGACAGCTACGGACCTCCACCTCGC | + |
|
Preference number: 5 (lower is better) Translates to: PGTGSPPLARPCLGS*ALRLANDSYGPPPR Trigger: GCGAGGTGGAGGTCCGTAGCTGTCATTTGCCAACCTTAGGGCTCAAGAGCCGAGGCAAGGGCGTGCGAGCGGTGGTGAGCCTGTGCCAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CCA 90 bp | TGTTCTCTCTTAGCTTGTAGCTGGTTCCCTGCCTGTCCTTCATGGTaGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: CSLLACSWFPACPSW*RPAGRRGRPALLLP Trigger: AGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGCAGGGAACCAGCTACAAGCTAAGAGAGAACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CCA 90 bp | CAATGTTCTCTCTTAGCTTGTAGCTGGTTCCCTGCCTGTCCTTCATaGTGGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTTG | + |
|
Preference number: 5 (lower is better) Translates to: QCSLLACSWFPACPS*WRPAGRRGRPALLL Trigger: CAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGCAGGGAACCAGCTACAAGCTAAGAGAGAACATTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS TCA 90 bp | GCTCCTTTAGCCGGACAGTGGCTTTCCCCTCATCCACAAATTTGGTaGAGAGCTGCTCAATGTTCTCTCTTAGCTTGTAGCTGGTTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: APLAGQWLSPHPQIW*RAAQCSLLACSWFP Trigger: AGGGAACCAGCTACAAGCTAAGAGAGAACATTGAGCAGCTCTTCACCAAATTTGTGGATGAGGGGAAAGCCACTGTCCGGCTAAAGGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS-3UTR CAA 90 bp | ACAGACACAGGTTTTGGCAGTATCCAAATCTTGACAAAGATGGTAAGGAATTATCGCCCGGCTCTGCTCTaGCCTCAGGCTGCAGCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: TDTGFGSIQILTKMVRNYRPALL*PQAAAH Trigger: ATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCG...ATAATTCCTTACCATCTTTGTCAAGATTTGGATACTGCCAAAACCTGTGTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222520.2 |
||
| CDS TCA 90 bp | AGGGAGCGCTTTGATTTTGTTCTTGCTGAGATCCAAACTGTGAAGTaGCTTCTGGAGTGTGGAAGTACACAAGGGCACACTAAAGGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: RERFDFVLAEIQTVK*LLECGSTQGHTKGL Trigger: GAGACCTTTAGTGTGCCCTTGTGTACTTCCACACTCCAGAAGTCACTTCACAGTTTGGATCTCAGCAAGAACAAAATCAAAGCGCTCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 90 bp | TGCACAGGGAGCGCTTTGATTTTGTTCTTGCTGAGATCCAAACTGTaGAGTGACTTCTGGAGTGTGGAAGTACACAAGGGCACACTAAAG | + |
|
Preference number: 5 (lower is better) Translates to: CTGSALILFLLRSKL*SDFWSVEVHKGTLK Trigger: CTTTAGTGTGCCCTTGTGTACTTCCACACTCCAGAAGTCACTTCACAGTTTGGATCTCAGCAAGAACAAAATCAAAGCGCTCCCTGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 90 bp | ACTGGTTTTAGTGTTGAGAGTGGTGTGTTGACGTCACAGCCTCTATaGGCCAGTCTCATAGCTGAAAGTAAAGTCTTTAAATTGCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: TGFSVESGVLTSQPL*ASLIAESKVFKLPG Trigger: TCCTGGCAATTTAAAGACTTTACTTTCAGCTATGAGACTGGCTCATAGAGGCTGTGACGTCAACACACCACTCTCAACACTAAAACCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 90 bp | ATCAATTCATTATCATTAAGGTTTAAGTTAGTAAGTTCCCGGAATTaGCAAAACTGCACAGGGAGCGCTTTGATTTTGTTCTTGCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: INSLSLRFKLVSSRN*QNCTGSALILFLLR Trigger: TCTCAGCAAGAACAAAATCAAAGCGCTCCCTGTGCAGTTTTGTCAATTCCGGGAACTTACTAACTTAAACCTTAATGATAATGAATTGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 90 bp | GATAGAAAACGGAGGTTTGTTAGCTGTCCTATCTTGAAAGGAAGGTaGATCAATTCATTATCATTAAGGTTTAAGTTAGTAAGTTCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: DRKRRFVSCPILKGR*INSLSLRFKLVSSR Trigger: CCGGGAACTTACTAACTTAAACCTTAATGATAATGAATTGATTCACCTTCCTTTCAAGATAGGACAGCTAACAAACCTCCGTTTTCTATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS GCA 72 bp | CAGGCGTGGCCGCCCGGCTCTGCTCTTGCCTCAGGCTaGAGCTCATTCCTGCCCGGGGCCTGGCACAGGCTC | + |
|
Preference number: 6 (lower is better) Translates to: QAWPPGSALASG*SSFLPGAWHRL Trigger: GAGCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS GCA 72 bp | GACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTTaGCTCAGGCTGCAGCTCATTCCTGCCCGGGGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: DQQAGVAARLCS*LRLQLIPARGL Trigger: CAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS GCA 72 bp | GGTGGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTaGTCTTGCCTCAGGCTGCAGCTCATTCCTGCCCGG | + |
|
Preference number: 6 (lower is better) Translates to: GGDQQAGVAARL*SCLRLQLIPAR Trigger: CCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CAA 72 bp | AGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTaGCCTCAGGCTGCAGCTCATTCCTGCCCGGGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: RPAGRRGRPALL*PQAAAHSCPGP Trigger: AGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CAA 90 bp | TCATGGTGGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTGCTCTaGCCTCAGGCTGCAGCTCATTCCTGCCCGGGGCCTGGCACAGGC | + |
|
Preference number: 6 (lower is better) Translates to: SWWRPAGRRGRPALL*PQAAAHSCPGPGTG Trigger: GCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAGAGCAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CCA 72 bp | CTTGCCTCAGGCTGCAGCTCATTCCTGCCCGGGGCCTaGCACAGGCTCACCACCGCTCGCACGCCCTTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: LASGCSSFLPGA*HRLTTARTPLP Trigger: AGGCAAGGGCGTGCGAGCGGTGGTGAGCCTGTGCCAGGCCCCGGGCAGGAATGAGCTGCAGCCTGAGGCAAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CCA 72 bp | TTAGCTTGTAGCTGGTTCCCTGCCTGTCCTTCATGGTaGAGACCAGCAGGCAGGCGTGGCCGCCCGGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LACSWFPACPSW*RPAGRRGRPAL Trigger: CAGAGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGCAGGGAACCAGCTACAAGCTAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CCA 72 bp | CTCTTAGCTTGTAGCTGGTTCCCTGCCTGTCCTTCATaGTGGAGACCAGCAGGCAGGCGTGGCCGCCCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: LLACSWFPACPS*WRPAGRRGRPA Trigger: AGCCGGGCGGCCACGCCTGCCTGCTGGTCTCCACCATGAAGGACAGGCAGGGAACCAGCTACAAGCTAAGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS TCA 72 bp | CCCTTGCCTCGGCTCTTGAGCCCTAAGGTTGGCAAATaGCAGCTACGGACCTCCACCTCGCAGGGCAGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: PLPRLLSPKVGK*QLRTSTSQGSL Trigger: GAGGCTGCCCTGCGAGGTGGAGGTCCGTAGCTGTCATTTGCCAACCTTAGGGCTCAAGAGCCGAGGCAAGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS TCA 72 bp | GGCTCACCACCGCTCGCACGCCCTTGCCTCGGCTCTTaGGCCCTAAGGTTGGCAAATGACAGCTACGGACCT | + |
|
Preference number: 6 (lower is better) Translates to: GSPPLARPCLGS*ALRLANDSYGP Trigger: AGGTCCGTAGCTGTCATTTGCCAACCTTAGGGCTCAAGAGCCGAGGCAAGGGCGTGCGAGCGGTGGTGAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS TCA 72 bp | GCCGGACAGTGGCTTTCCCCTCATCCACAAATTTGGTaGAGAGCTGCTCAATGTTCTCTCTTAGCTTGTAGC | + |
|
Preference number: 6 (lower is better) Translates to: AGQWLSPHPQIW*RAAQCSLLACS Trigger: GCTACAAGCTAAGAGAGAACATTGAGCAGCTCTTCACCAAATTTGTGGATGAGGGGAAAGCCACTGTCCGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110621.3 ENSMUST00000222520.2 |
||
| CDS CAA 72 bp | AAAGGTCTCCAGCTGATTGTCATTAAGGTTAAGCTCTaGAAGGTGGGTGAGGTCTCCAATTGTAGCTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: KGLQLIVIKVKL*KVGEVSNCSWK Trigger: CTTCCAGCTACAATTGGAGACCTCACCCACCTTCAAGAGCTTAACCTTAATGACAATCAGCTGGAGACCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 72 bp | AGTGTTGAGAGTGGTGTGTTGACGTCACAGCCTCTATaGGCCAGTCTCATAGCTGAAAGTAAAGTCTTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: SVESGVLTSQPL*ASLIAESKVFK Trigger: TTTAAAGACTTTACTTTCAGCTATGAGACTGGCTCATAGAGGCTGTGACGTCAACACACCACTCTCAACACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 72 bp | TTTGATTTTGTTCTTGCTGAGATCCAAACTGTGAAGTaGCTTCTGGAGTGTGGAAGTACACAAGGGCACACT | + |
|
Preference number: 6 (lower is better) Translates to: FDFVLAEIQTVK*LLECGSTQGHT Trigger: AGTGTGCCCTTGTGTACTTCCACACTCCAGAAGTCACTTCACAGTTTGGATCTCAGCAAGAACAAAATCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS CAA 90 bp | TACTCCAGGGATAACATTTTAAATTCAGAGGGTAGATTTCTAAGTTaGTTTCGAGCTGCTGATAGAAAACGGAGGTTTGTTAGCTGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: YSRDNILNSEGRFLS*FRAADRKRRFVSCP Trigger: AGGACAGCTAACAAACCTCCGTTTTCTATCAGCAGCTCGAAACAAACTTAGAAATCTACCCTCTGAATTTAAAATGTTATCCCTGGAGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||
| CDS TCA 72 bp | TTATCATTAAGGTTTAAGTTAGTAAGTTCCCGGAATTaGCAAAACTGCACAGGGAGCGCTTTGATTTTGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LSLRFKLVSSRN*QNCTGSALILF Trigger: GAACAAAATCAAAGCGCTCCCTGTGCAGTTTTGTCAATTCCGGGAACTTACTAACTTAAACCTTAATGATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110621.3 |
||