Pregenerated sensors for LRMDA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063458Ensembl transcript IDs: ENSMUST00000075639.11, ENSMUST00000159777.8, ENSMUST00000161249.8, ENSMUST00000162540.2, ENSMUST00000226003.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTAAGACGCAGCCAGTGGAGAGGCCAGTGAGGGAGGCGCAGCTTTaGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGG | + |
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Preference number: 1 (lower is better) Translates to: IKTQPVERPVREAQL*ILSYFSESGSEAPG Trigger: CCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCTCCCTCACTGGCCTCTCCACTGGCTGCGTCTTAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| 3UTR GCA 90 bp | ATCATGTTCCAAGGCAGGAGGAGATTCCACCTCTCCCTATCCCCATaGAGAGAAACAGTCCGTTCTCACTCAGGCTCCCCTGAGAAGTTT | + |
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Preference number: 1 (lower is better) Translates to: IMFQGRRRFHLSLSP*RETVRSHSGSPEKF Trigger: AAACTTCTCAGGGGAGCCTGAGTGAGAACGGACTGTTTCTCTGCATGGGGATAGGGAGAGGTGGAATCTCCTCCTGCCTTGGAACATGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR TCA 90 bp | TTCAGACATAAGGGTAAAATTCCAGCTCAGGAATTCATGACCCAGTaGCTTTGGGCAGCTTCACGAACTGCTTTGGGACTGAACCCCATC | + |
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Preference number: 1 (lower is better) Translates to: FRHKGKIPAQEFMTQ*LWAASRTALGLNPI Trigger: GATGGGGTTCAGTCCCAAAGCAGTTCGTGAAGCTGCCCAAAGTCACTGGGTCATGAATTCCTGAGCTGGAATTTTACCCTTATGTCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR TCA 90 bp | AGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCTaGATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCA | + |
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Preference number: 1 (lower is better) Translates to: SLASELIISDKPVTL*ISSIVKIATFPEDA Trigger: TGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| 3UTR CCA 90 bp | TCCCACCATTCAGCAGGTGTGCAGTATGATAAACCAGTAACAGTGTaGAATCTTCTTGGGTTCTTGAAGGATCATTGCATAAGAACCCTT | + |
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Preference number: 1 (lower is better) Translates to: SHHSAGVQYDKPVTV*NLLGFLKDHCIRTL Trigger: AAGGGTTCTTATGCAATGATCCTTCAAGAACCCAAGAAGATTCCACACTGTTACTGGTTTATCATACTGCACACCTGCTGAATGGTGGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR CAA 90 bp | CTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTaGTCATCCTGGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: LSYFSESGSEAPGGS*SSWSFKLCHSHPRS Trigger: GGACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCACTCAGGCTCCCCTGAGAAGTTTCAACTGTGTCAAGACATCTCCAGGGAACAGCTCAGGAATTCATaGCCCAGTGACTTTGGGCAG | + |
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Preference number: 2 (lower is better) Translates to: SHSGSPEKFQLCQDISREQLRNS*PSDFGQ Trigger: CTGCCCAAAGTCACTGGGTCATGAATTCCTGAGCTG...TTCCCTGGAGATGTCTTGACACAGTTGAAACTTCTCAGGGGAGCCTGAGTGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR-3UTR TCA 90 bp | AATCTCAAGGCACCACAGAAACAGAAGCCAAGATCGCCAGGCTTCTCTGTCAAGGAATTCATGACCCAGTaGCTTTGGGCAGCTTCACGA | + |
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Preference number: 2 (lower is better) Translates to: NLKAPQKQKPRSPGFSVKEFMTQ*LWAASR Trigger: TCGTGAAGCTGCCCAAAGTCACTGGGTCATGAATTC...CTTGACAGAGAAGCCTGGCGATCTTGGCTTCTGTTTCTGTGGTGCCTTGAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR-3UTR CCA 90 bp | ATACAGTTAGTAAGGGCATTAGAGTCAATCACAGAAGCATGTGCTAATTCTATAGCTAAAACAGCAGAGTaGGAAGAGACTAGGCCCCAT | + |
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Preference number: 2 (lower is better) Translates to: IQLVRALESITEACANSIAKTAE*EETRPH Trigger: ATGGGGCCTAGTCTCTTCCCACTCTGCTGTTTTAGC...TATAGAATTAGCACATGCTTCTGTGATTGACTCTAATGCCCTTACTAACTGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR CCA 72 bp | AGTGGCAGTGAAGCTCCTGGGGGCTCCTTGTCATCCTaGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: SGSEAPGGSLSS*SFKLCHSHPRS Trigger: GGACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCAGGAGCTTCACTGCCACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| 3UTR CCA 72 bp | CAGCCAGTGGAGAGGCCAGTGAGGGAGGCGCAGCTTTaGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: QPVERPVREAQL*ILSYFSESGSE Trigger: TTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCTCCCTCACTGGCCTCTCCACTGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| 3UTR-3UTR CAA 90 bp | CTATCCCCATGCAGAGAAACAGTCCGTTCTCACTCAGGCTCCCCTGAGAAGTTTCATGACCCAGTGACTTaGGGCAGCTTCACGAACTGC | + |
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Preference number: 3 (lower is better) Translates to: LSPCRETVRSHSGSPEKFHDPVT*GSFTNC Trigger: GCAGTTCGTGAAGCTGCCCAAAGTCACTGGGTCATG...AAACTTCTCAGGGGAGCCTGAGTGAGAACGGACTGTTTCTCTGCATGGGGATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR TCA 72 bp | ATGCAGAGAAACAGTCCGTTCTCACTCAGGCTCCCCTaGGAAGTTTCAACTGTGTCAAGACATCTCCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: MQRNSPFSLRLP*EVSTVSRHLQG Trigger: TCCCTGGAGATGTCTTGACACAGTTGAAACTTCTCAGGGGAGCCTGAGTGAGAACGGACTGTTTCTCTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR TCA 72 bp | AAGGGTAAAATTCCAGCTCAGGAATTCATGACCCAGTaGCTTTGGGCAGCTTCACGAACTGCTTTGGGACTG | + |
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Preference number: 3 (lower is better) Translates to: KGKIPAQEFMTQ*LWAASRTALGL Trigger: CAGTCCCAAAGCAGTTCGTGAAGCTGCCCAAAGTCACTGGGTCATGAATTCCTGAGCTGGAATTTTACCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR TCA 72 bp | TCAGACATAAGGGTAAAATTCCAGCTCAGGAATTCATaGCCCAGTGACTTTGGGCAGCTTCACGAACTGCTT | + |
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Preference number: 3 (lower is better) Translates to: SDIRVKFQLRNS*PSDFGQLHELL Trigger: AAGCAGTTCGTGAAGCTGCCCAAAGTCACTGGGTCATGAATTCCTGAGCTGGAATTTTACCCTTATGTCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR GCA 72 bp | ACAGTGTGGAATCTTCTTGGGTTCTTGAAGGATCATTaGATAAGAACCCTTAAACGGAACCCCAAGAACCCT | + |
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Preference number: 3 (lower is better) Translates to: TVWNLLGFLKDH*IRTLKRNPKNP Trigger: AGGGTTCTTGGGGTTCCGTTTAAGGGTTCTTATGCAATGATCCTTCAAGAACCCAAGAAGATTCCACACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| 3UTR TCA 72 bp | TCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCTaGATTTCTTCCATAGTAAAAATAGCGACCTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: SELIISDKPVTL*ISSIVKIATFP Trigger: GGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| 3UTR CCA 72 bp | TCAGCAGGTGTGCAGTATGATAAACCAGTAACAGTGTaGAATCTTCTTGGGTTCTTGAAGGATCATTGCATA | + |
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Preference number: 3 (lower is better) Translates to: SAGVQYDKPVTV*NLLGFLKDHCI Trigger: TATGCAATGATCCTTCAAGAACCCAAGAAGATTCCACACTGTTACTGGTTTATCATACTGCACACCTGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS-3UTR CCA 90 bp | TCCCTATCCCCATGCAGAGAAACAGTCCGTTCTCACTCAGGCTCCCCTGAGAAGGTGGGCAAGGCAGGATaGCCAGTAACTGACCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SLSPCRETVRSHSGSPEKVGKAG*PVTDPR Trigger: CCTGGGGTCAGTTACTGGCCATCCTGCCTTGCCCAC...CTTCTCAGGGGAGCCTGAGTGAGAACGGACTGTTTCTCTGCATGGGGATAGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS-3UTR CCA 90 bp | CTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTGTCATCCTGGAGCTTCAAACCCGGCCCAGGTGCTCTaGAATTTCTCTGCAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: LKVAVKLLGAPCHPGASNPAQVL*NFSAGL Trigger: CAGTCCTGCAGAGAAATTCCAGAGCACCTGGGCCGG...GTTTGAAGCTCCAGGATGACAAGGAGCCCCCAGGAGCTTCACTGCCACTTTCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR GCA 90 bp | GAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCAAGTCCCGGCCCAGGTaGTCTGGAATTTCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: ESGSEAPGGSLSSWSFKLKSRPR*SGISLQ Trigger: CTGCAGAGAAATTCCAGAGCACCTGGGCCGGGACTT...GAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCAGGAGCTTCACTGCCACTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR CCA 90 bp | TGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCGTTAAGGTGTGCAAGTaGGGTAACCCTGGCAACACG | + |
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Preference number: 4 (lower is better) Translates to: WGLLVILELQTLSQPSQVVKVCK*GNPGNT Trigger: CGTGTTGCCAGGGTTACCCCACTTGCACACCTTAAC...GACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR TCA 90 bp | TGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCACTCAGTCCTTCCAGTaGCCTCAAGAGGTTGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: WGLLVILELQTLSQPSQVTQSFQ*PQEVEA Trigger: AGCTTCAACCTCTTGAGGTCACTGGAAGGACTGAGT...GACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR TCA 90 bp | TTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTGCTCCTCCAGGCTCCTaGATGCACTCAGTCCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: FGFSPTSLKVAVKLLGAPAPPGS*MHSVLP Trigger: TGGAAGGACTGAGTGCATTCAGGAGCCTGGAGGAGC...AGGAGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR TCA 90 bp | TCTCAAGGCACCACAGAAACAGAAGCCAAGATCGCCAGGCTTCTCTGTCAAGGGCTTGGCTGGGGTTGGTaGTGTTGGCTGTCTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: SQGTTETEAKIARLLCQGLGWGW*CWLSLK Trigger: CTTCAGAGACAGCCAACATCACCAACCCCAGCCAAG...CCCTTGACAGAGAAGCCTGGCGATCTTGGCTTCTGTTTCTGTGGTGCCTTGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS-3UTR TCA 90 bp | ACCCTCCCAGACTCCTCAAGCACAAAGCAACAGAAGGGACCTCCTACTGGGAAAAGGATGGCCAGTAACTaGCCCCAGGGTCTCACAAAG | + |
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Preference number: 4 (lower is better) Translates to: TLPDSSSTKQQKGPPTGKRMASN*PQGLTK Trigger: CTTTGTGAGACCCTGGGGTCAGTTACTGGCCATCCT...TTTCCCAGTAGGAGGTCCCTTCTGTTGCTTTGTGCTTGAGGAGTCTGGGAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS-3UTR GCA 90 bp | AGGGAGGCGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTGGCCCCTCTGACCAATaGCTCCTCCCGTTCTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: REAQLWILSYFSESGSEAGPSDQ*LLPFLS Trigger: AGACAAGAACGGGAGGAGGCATTGGTCAGAGGGGCC...AGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCTCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR GCA 90 bp | GGCGTGCAGAGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCGGCCCCTCTGACCAATaGCTCCTCCCGTTCTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GVQSLASELIISDKPVTLGPSDQ*LLPFLS Trigger: AGACAAGAACGGGAGGAGGCATTGGTCAGAGGGGCC...GAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACTCTGCACGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR TCA 90 bp | GAGGCGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGTCACTTCTGCCAGGTaGTCAAGGAGGTACTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: EAQLWILSYFSESGSEAPVTSAR*SRRYSK Trigger: CTTGGAGTACCTCCTTGATCACCTGGCAGAAGTGAC...AGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR TCA 90 bp | AGGCGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGCCCGTTCTTGTCTGGTaGCTTTCTGGGCATCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: RRSFGFSPTSLKVAVKLLPVLVW*LSGHPE Trigger: TTCTGGATGCCCAGAAAGTCACCAGACAAGAACGGG...CAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR GCA 90 bp | GAGGCGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGCTCTGGAATTTCTCTaGAGGACTGGCCTACGTAGG | + |
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Preference number: 4 (lower is better) Translates to: EAQLWILSYFSESGSEAPALEFL*RTGLRR Trigger: CCTACGTAGGCCAGTCCTGCAGAGAAATTCCAGAGC...AGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR GCA 90 bp | GGCGTGCAGAGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCAAGTCCCGGCCCAGGTaGTCTGGAATTTCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GVQSLASELIISDKPVTLKSRPR*SGISLQ Trigger: CTGCAGAGAAATTCCAGAGCACCTGGGCCGGGACTT...GAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACTCTGCACGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR GCA 90 bp | TTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTTGAGGGTTAAGGTGTaGAAGTGGGGTAACCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: FGFSPTSLKVAVKLLGAPLRVKV*KWGNPG Trigger: GCCAGGGTTACCCCACTTGCACACCTTAACCCTCAA...AGGAGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR TCA 90 bp | AGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTGTGACCTCAAGAGGTTaGAGCTCAGGTCAAGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SFGFSPTSLKVAVKLLGAVTSRG*SSGQVS Trigger: AGAGACTTGACCTGAGCTTCAACCTCTTGAGGTCAC...AGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR GCA 90 bp | GGCGTGCAGAGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCTTGAGGGTTAAGGTGTaGAAGTGGGGTAACCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GVQSLASELIISDKPVTLLRVKV*KWGNPG Trigger: GCCAGGGTTACCCCACTTGCACACCTTAACCCTCAA...GAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACTCTGCACGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR TCA 90 bp | GGCGTGCAGAGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCGTGACCTCAAGAGGTTaGAGCTCAGGTCAAGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: GVQSLASELIISDKPVTLVTSRG*SSGQVS Trigger: AGAGACTTGACCTGAGCTTCAACCTCTTGAGGTCAC...GAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACTCTGCACGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR TCA 90 bp | AATCTCAAGGCACCACAGAAACAGAAGCCAAGATCGCCAGGCTTCTCTGTCAAGGATGTTGGCTGTCTCTaGAGTCCTTGGGTTTCACCA | + |
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Preference number: 4 (lower is better) Translates to: NLKAPQKQKPRSPGFSVKDVGCL*SPWVSP Trigger: TGGTGAAACCCAAGGACTTCAGAGACAGCCAACATC...CTTGACAGAGAAGCCTGGCGATCTTGGCTTCTGTTTCTGTGGTGCCTTGAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS-3UTR GCA 90 bp | CCAGTGAGGGAGGCGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTCAGGTCAAGTCTCTTTaGAAAATGTCCAAAGTCCCG | + |
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Preference number: 4 (lower is better) Translates to: PVREAQLWILSYFSESGSQVKSL*KMSKVP Trigger: CGGGACTTTGGACATTTTGCAAAGAGACTTGACCTG...ACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCGCCTCCCTCACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR GCA 90 bp | TTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTAACTTGGGCAGCTTGTaGAGAACAAAGCACCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: FGFSPTSLKVAVKLLGAPNLGSL*RTKHLY Trigger: ATACAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTT...AGGAGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR CCA 90 bp | ACCTGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACCGGCCCAGGTGCTCTaGAATTTCTCTGCAGGACTG | + |
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Preference number: 4 (lower is better) Translates to: TCYPLNFFHSKNSDLSRGPAQVL*NFSAGL Trigger: CAGTCCTGCAGAGAAATTCCAGAGCACCTGGGCCGG...TCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR TCA 90 bp | TACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCAGTCCCGTTCTTGTCTGGTaGCTTTCTGGGCATCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: YPLNFFHSKNSDLSRGRSPVLVW*LSGHPE Trigger: TTCTGGATGCCCAGAAAGTCACCAGACAAGAACGGG...ACTGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR GCA 90 bp | TGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCGCTCTGGAATTTCTCTaGAGGACTGGCCTACGTAGG | + |
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Preference number: 4 (lower is better) Translates to: CYPLNFFHSKNSDLSRGRALEFL*RTGLRR Trigger: CCTACGTAGGCCAGTCCTGCAGAGAAATTCCAGAGC...GCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR GCA 90 bp | TACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCAGTGGGAACATGGCAGCATaGAGCAGACATGATGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: YPLNFFHSKNSDLSRGRSGNMAA*SRHDAW Trigger: CCAAGCATCATGTCTGCTGCATGCTGCCATGTTCCC...ACTGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR CCA 90 bp | CAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCAAGTCGGTAATTTaGTTCTTGTTGAGGGTTAAG | + |
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Preference number: 4 (lower is better) Translates to: QLWILSYFSESGSEAPGGSKSVI*FLLRVK Trigger: CTTAACCCTCAACAAGAACCAAATTACCGACTTGGA...GCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR CCA 90 bp | TGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCATCACGGTGGGAACATaGCAGCATGCAGCAGACATG | + |
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Preference number: 4 (lower is better) Translates to: CYPLNFFHSKNSDLSRGRITVGT*QHAADM Trigger: CATGTCTGCTGCATGCTGCCATGTTCCCACCGTGAT...GCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR TCA 90 bp | TGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCACTCAGTCCTTCCAGTaGCCTCAAGAGGTTGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: CYPLNFFHSKNSDLSRGRTQSFQ*PQEVEA Trigger: AGCTTCAACCTCTTGAGGTCACTGGAAGGACTGAGT...GCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR TCA 90 bp | ACCTGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGAGTCACTTCTGCCAGGTaGTCAAGGAGGTACTCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: TCYPLNFFHSKNSDLSRGVTSAR*SRRYSK Trigger: CTTGGAGTACCTCCTTGATCACCTGGCAGAAGTGAC...TCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS-3UTR CCA 90 bp | ACCTGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGAGTTAAGGTGTGCAAGTaGGGTAACCCTGGCAACACG | + |
|
Preference number: 4 (lower is better) Translates to: TCYPLNFFHSKNSDLSRGVKVCK*GNPGNT Trigger: CGTGTTGCCAGGGTTACCCCACTTGCACACCTTAAC...TCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS-3UTR CCA 90 bp | ACCTGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACCATTATCATCACGGTaGGAACATGGCAGCATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TCYPLNFFHSKNSDLSRGPLSSR*EHGSMQ Trigger: CTGCATGCTGCCATGTTCCCACCGTGATGATAATGG...TCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS-3UTR GCA 90 bp | TACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCAGTAACTTGGGCAGCTTGTaGAGAACAAAGCACCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: YPLNFFHSKNSDLSRGRSNLGSL*RTKHLY Trigger: ATACAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTT...ACTGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS-3UTR CAA 90 bp | CCCATCGCCATCATGTTCCAAGGCAGGAGGAGATTCCACCTCTCCCTATCCCCACGTACTTGGCTGGGGTaGGTGATGTTGGCTGTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: PIAIMFQGRRRFHLSLSPRTWLG*VMLAVS Trigger: AGAGACAGCCAACATCACCAACCCCAGCCAAGTACG...TGGGGATAGGGAGAGGTGGAATCTCCTCCTGCCTTGGAACATGATGGCGATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS-3UTR CAA 90 bp | CGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGTGCCTCCTCCCGTTCTaGTCTGGTGACTTTCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: RSFGFSPTSLKVAVKLLGCLLPF*SGDFLG Trigger: GCCCAGAAAGTCACCAGACAAGAACGGGAGGAGGCA...CCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS-3UTR CAA 90 bp | TGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCAGTGACCTCAAGAGGTaGAAGCTCAGGTCAAGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: WGLLVILELQTLSQPSQVSDLKR*KLRSSL Trigger: GAGACTTGACCTGAGCTTCAACCTCTTGAGGTCACT...GACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS TCA 90 bp | CATAGTAAAAATAGCGACCTTTCCCGAGGACGCCTCGATGACTGGTaGGATCTCTGGATCCAGAAGGCAAGGGTGTGTACTGGGGCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: HSKNSDLSRGRLDDW*DLWIQKARVCTGAG Trigger: ACCAGCCCCAGTACACACCCTTGCCTTCTGGATCCAGAGATCTCACCAGTCATCGAGGCGTCCTCGGGAAAGGTCGCTATTTTTACTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075639.11 |
||
| CDS-3UTR CAA 90 bp | TGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCTCATCCTTCTCCAAGTaGACCAGCTCATTGGGACAT | + |
|
Preference number: 5 (lower is better) Translates to: WGLLVILELQTLSQPSQVSSFSK*TSSLGH Trigger: ATGTCCCAATGAGCTGGTCAACTTGGAGAAGGATGA...GACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS-3UTR CAA 90 bp | GAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTTCAACTTGGGCAGCTaGTGCAGAACAAAGCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: ESGSEAPGGSLSSWSFKLFNLGS*CRTKHL Trigger: CAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTTGAA...GAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCAGGAGCTTCACTGCCACTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS-3UTR CAA 90 bp | TCCCTATCCCCATGCAGAGAAACAGTCCGTTCTCACTCAGGCTCCCCTGAGAAGCTGTCTCTGAAGTCCTaGGGTTTCACCACCTTCATG | + |
|
Preference number: 5 (lower is better) Translates to: SLSPCRETVRSHSGSPEKLSLKS*GFTTFM Trigger: CATGAAGGTGGTGAAACCCAAGGACTTCAGAGACAG...CTTCTCAGGGGAGCCTGAGTGAGAACGGACTGTTTCTCTGCATGGGGATAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS GCA 90 bp | AGGTACTCCAAGTCGGTAATTTGGTTCTTGTTGAGGGTTAAGGTGTaGAAGTGGGGTAACCCTGGCAACACGAGGTCGTCTCCGAGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: RYSKSVIWFLLRVKV*KWGNPGNTRSSPSR Trigger: TCTGCTCGGAGACGACCTCGTGTTGCCAGGGTTACCCCACTTGCACACCTTAACCCTCAACAAGAACCAAATTACCGACTTGGAGTACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS CCA 90 bp | GTCAAGTCTCTTTGCAAAATGTCCAAAGTCCCGGCCCAGGTGCTCTaGAATTTCTCTGCAGGACTGGCCTACGTAGGACACTTGAGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: VKSLCKMSKVPAQVL*NFSAGLAYVGHLSS Trigger: GGAACTCAAGTGTCCTACGTAGGCCAGTCCTGCAGAGAAATTCCAGAGCACCTGGGCCGGGACTTTGGACATTTTGCAAAGAGACTTGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000161249.8 ENSMUST00000162540.2 |
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| CDS-3UTR CAA 90 bp | TGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTGTCACAGCCATCCCAGGTCTCAGGTCAAGTCTCTTaGCAAAATGTCCAAAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: WGLLVILELQTLSQPSQVSGQVS*QNVQSP Trigger: GGGACTTTGGACATTTTGCAAAGAGACTTGACCTGA...GACCTGGGATGGCTGTGACAGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS TCA 90 bp | CCCAGGAGGCTGAGGTACTCTAAGGATGGTGTCACTTCTGCCAGGTaGTCAAGGAGGTACTCCAAGTCGGTAATTTGGTTCTTGTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: PRRLRYSKDGVTSAR*SRRYSKSVIWFLLR Trigger: CCTCAACAAGAACCAAATTACCGACTTGGAGTACCTCCTTGATCACCTGGCAGAAGTGACACCATCCTTAGAGTACCTCAGCCTCCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
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| CDS CCA 90 bp | TCCAAGTCGGTAATTTGGTTCTTGTTGAGGGTTAAGGTGTGCAAGTaGGGTAACCCTGGCAACACGAGGTCGTCTCCGAGCAGATTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: SKSVIWFLLRVKVCK*GNPGNTRSSPSRLL Trigger: CAACAATCTGCTCGGAGACGACCTCGTGTTGCCAGGGTTACCCCACTTGCACACCTTAACCCTCAACAAGAACCAAATTACCGACTTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS-3UTR CAA 90 bp | AAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTGTCATCCTGGAGCTTCAAACTCTTCTCCGAGCAGATTGTaGTCTAAAATGAGCTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: KVAVKLLGAPCHPGASNSSPSRL*SKMSSS Trigger: GGAGGAGCTCATTTTAGACAACAATCTGCTCGGAGA...AGAGTTTGAAGCTCCAGGATGACAAGGAGCCCCCAGGAGCTTCACTGCCACTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS-3UTR CAA 90 bp | AATCTCAAGGCACCACAGAAACAGAAGCCAAGATCGCCAGGCTTCTCTGTCAAGCTGGGGTTGGTGATGTaGGCTGTCTCTGAAGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: NLKAPQKQKPRSPGFSVKLGLVM*AVSEVL Trigger: AAGGACTTCAGAGACAGCCAACATCACCAACCCCAG...CTTGACAGAGAAGCCTGGCGATCTTGGCTTCTGTTTCTGTGGTGCCTTGAGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS GCA 90 bp | CTGGTGACTTTCTGGGCATCCAGAAACTTCAACTTGGGCAGCTTGTaGAGAACAAAGCACCTCAAGAGGTTGAAGCTCAGGTCAAGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LVTFWASRNFNLGSL*RTKHLKRLKLRSSL Trigger: GAGACTTGACCTGAGCTTCAACCTCTTGAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTTGAAGTTTCTGGATGCCCAGAAAGTCACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161249.8 |
||
| CDS-3UTR CAA 90 bp | ATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTGTCATCCAGAAACTTCAACTaGGGCAGCTTGTGCAGAACA | + |
|
Preference number: 5 (lower is better) Translates to: ILSYFSESGSEAPGGSLSSRNFN*GSLCRT Trigger: TGTTCTGCACAAGCTGCCCAAGTTGAAGTTTCTGGA...TGACAAGGAGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
||
| CDS-3UTR CAA 90 bp | TGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCTGCCTCCTCCCGTTCTaGTCTGGTGACTTTCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: CYPLNFFHSKNSDLSRGRCLLPF*SGDFLG Trigger: GCCCAGAAAGTCACCAGACAAGAACGGGAGGAGGCA...GCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS TCA 90 bp | ACTTCAACTTGGGCAGCTTGTGCAGAACAAAGCACCTCAAGAGGTTaGAGCTCAGGTCAAGTCTCTTTGCAAAATGTCCAAAGTCCCGGC | + |
|
Preference number: 5 (lower is better) Translates to: TSTWAACAEQSTSRG*SSGQVSLQNVQSPG Trigger: GCCGGGACTTTGGACATTTTGCAAAGAGACTTGACCTGAGCTTCAACCTCTTGAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTTGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161249.8 |
||
| CDS GCA 90 bp | CAGAACAAAGCACCTCAAGAGGTTGAAGCTCAGGTCAAGTCTCTTTaGAAAATGTCCAAAGTCCCGGCCCAGGTGCTCTGGAATTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: QNKAPQEVEAQVKSL*KMSKVPAQVLWNFS Trigger: AGAGAAATTCCAGAGCACCTGGGCCGGGACTTTGGACATTTTGCAAAGAGACTTGACCTGAGCTTCAACCTCTTGAGGTGCTTTGTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161249.8 |
||
| CDS-3UTR CAA 90 bp | CGCAGCTTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGTAATTTGGTTCTTGTaGAGGGTTAAGGTGTGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: RSFGFSPTSLKVAVKLLGVIWFL*RVKVCK Trigger: CTTGCACACCTTAACCCTCAACAAGAACCAAATTAC...CCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAAGCTGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR CAA 90 bp | TTTGGATTCTCTCCTACTTCTCTGAAAGTGGCAGTGAAGCTCCTGGGGGCTCCTTCGGTAATTTGGTTCTaGTTGAGGGTTAAGGTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: FGFSPTSLKVAVKLLGAPSVIWF*LRVKVC Trigger: GCACACCTTAACCCTCAACAAGAACCAAATTACCGA...AGGAGCCCCCAGGAGCTTCACTGCCACTTTCAGAGAAGTAGGAGAGAATCCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159777.8 |
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| CDS-3UTR CAA 90 bp | CCCATCGCCATCATGTTCCAAGGCAGGAGGAGATTCCACCTCTCCCTATCCCCAAAATCAAGATCTGTTTaGTGCAGTGTAGACGTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: PIAIMFQGRRRFHLSLSPKSRSV*CSVDVN Trigger: ATTCACGTCTACACTGCACAAAACAGATCTTGATTT...TGGGGATAGGGAGAGGTGGAATCTCCTCCTGCCTTGGAACATGATGGCGATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS-3UTR CAA 90 bp | GGCGTGCAGAGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCTCGGTAATTTGGTTCTaGTTGAGGGTTAAGGTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: GVQSLASELIISDKPVTLSVIWF*LRVKVC Trigger: GCACACCTTAACCCTCAACAAGAACCAAATTACCGA...GAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACTCTGCACGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR CAA 90 bp | TACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCAGTAGTGACCTCAAGAGGTaGAAGCTCAGGTCAAGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: YPLNFFHSKNSDLSRGRSSDLKR*KLRSSL Trigger: GAGACTTGACCTGAGCTTCAACCTCTTGAGGTCACT...ACTGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR CAA 90 bp | GGCGTGCAGAGTTTAGCTTCAGAGCTGATCATCTCGGATAAACCTGTTACCCTCGTAATTTGGTTCTTGTaGAGGGTTAAGGTGTGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: GVQSLASELIISDKPVTLVIWFL*RVKVCK Trigger: CTTGCACACCTTAACCCTCAACAAGAACCAAATTAC...GAGGGTAACAGGTTTATCCGAGATGATCAGCTCTGAAGCTAAACTCTGCACGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS-3UTR CAA 90 bp | TACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCAGTTTCAACTTGGGCAGCTaGTGCAGAACAAAGCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: YPLNFFHSKNSDLSRGRSFNLGS*CRTKHL Trigger: CAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTTGAA...ACTGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR CAA 90 bp | TGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCTCATCCTTCTCCAAGTaGACCAGCTCATTGGGACAT | + |
|
Preference number: 5 (lower is better) Translates to: CYPLNFFHSKNSDLSRGRSSFSK*TSSLGH Trigger: ATGTCCCAATGAGCTGGTCAACTTGGAGAAGGATGA...GCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS-3UTR CAA 90 bp | TACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGACGCAGTTCCAGAAACTTCAACTaGGGCAGCTTGTGCAGAACA | + |
|
Preference number: 5 (lower is better) Translates to: YPLNFFHSKNSDLSRGRSSRNFN*GSLCRT Trigger: TGTTCTGCACAAGCTGCCCAAGTTGAAGTTTCTGGA...ACTGCGTCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS-3UTR CAA 90 bp | ACCTGTTACCCTCTGAATTTCTTCCATAGTAAAAATAGCGACCTTTCCCGAGGATCAGGTCAAGTCTCTTaGCAAAATGTCCAAAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: TCYPLNFFHSKNSDLSRGSGQVS*QNVQSP Trigger: GGGACTTTGGACATTTTGCAAAGAGACTTGACCTGA...TCCTCGGGAAAGGTCGCTATTTTTACTATGGAAGAAATTCAGAGGGTAACAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
||
| CDS GCA 72 bp | GGGTTTCACCACCTTCATGAAGGCCCCTCTGACCAATaGCTCCTCCCGTTCTTGTCTGGTGACTTTCTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GFHHLHEGPSDQ*LLPFLSGDFLG Trigger: GCCCAGAAAGTCACCAGACAAGAACGGGAGGAGGCATTGGTCAGAGGGGCCTTCATGAAGGTGGTGAAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000161249.8 ENSMUST00000162540.2 |
||
| CDS TCA 72 bp | CCAGCTCATTGGGACATGCCACGTTTCCCAGGAGGCTaGGGTACTCTAAGGATGGTGTCACTTCTGCCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: PAHWDMPRFPGG*GTLRMVSLLPG Trigger: ACCTGGCAGAAGTGACACCATCCTTAGAGTACCTCAGCCTCCTGGGAAACGTGGCATGTCCCAATGAGCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS TCA 72 bp | AGACGTGAATGTGGGCAAGGCAGGATGGCCAGTAACTaGCCCCAGGGTCTCACAAAGACTTCATCTGCCGTA | + |
|
Preference number: 6 (lower is better) Translates to: RRECGQGRMASN*PQGLTKTSSAV Trigger: TACGGCAGATGAAGTCTTTGTGAGACCCTGGGGTCAGTTACTGGCCATCCTGCCTTGCCCACATTCACGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS CAA 90 bp | AAGTGGGGTAACCCTGGCAACACGAGGTCGTCTCCGAGCAGATTGTaGTCTAAAATGAGCTCCTCCAGGCTCCTGAATGCACTCAGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: KWGNPGNTRSSPSRL*SKMSSSRLLNALSP Trigger: AGGACTGAGTGCATTCAGGAGCCTGGAGGAGCTCATTTTAGACAACAATCTGCTCGGAGACGACCTCGTGTTGCCAGGGTTACCCCACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS CCA 72 bp | GTAATTTGGTTCTTGTTGAGGGTTAAGGTGTGCAAGTaGGGTAACCCTGGCAACACGAGGTCGTCTCCGAGC | + |
|
Preference number: 6 (lower is better) Translates to: VIWFLLRVKVCK*GNPGNTRSSPS Trigger: GCTCGGAGACGACCTCGTGTTGCCAGGGTTACCCCACTTGCACACCTTAACCCTCAACAAGAACCAAATTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS CCA 72 bp | TTGTGCAGTGTAGACGTGAATGTGGGCAAGGCAGGATaGCCAGTAACTGACCCCAGGGTCTCACAAAGACTT | + |
|
Preference number: 6 (lower is better) Translates to: LCSVDVNVGKAG*PVTDPRVSQRL Trigger: AAGTCTTTGTGAGACCCTGGGGTCAGTTACTGGCCATCCTGCCTTGCCCACATTCACGTCTACACTGCACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS CAA 72 bp | AACCCTGGCAACACGAGGTCGTCTCCGAGCAGATTGTaGTCTAAAATGAGCTCCTCCAGGCTCCTGAATGCA | + |
|
Preference number: 6 (lower is better) Translates to: NPGNTRSSPSRL*SKMSSSRLLNA Trigger: TGCATTCAGGAGCCTGGAGGAGCTCATTTTAGACAACAATCTGCTCGGAGACGACCTCGTGTTGCCAGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS CAA 72 bp | CATGAAGGCCCCTCTGACCAATGCCTCCTCCCGTTCTaGTCTGGTGACTTTCTGGGCATCCAGAAACTTCAA | + |
|
Preference number: 6 (lower is better) Translates to: HEGPSDQCLLPF*SGDFLGIQKLQ Trigger: TTGAAGTTTCTGGATGCCCAGAAAGTCACCAGACAAGAACGGGAGGAGGCATTGGTCAGAGGGGCCTTCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000161249.8 ENSMUST00000162540.2 |
||
| CDS CAA 72 bp | GACTTCATCTGCCGTACTTGGCTGGGGTTGGTGATGTaGGCTGTCTCTGAAGTCCTTGGGTTTCACCACCTT | + |
|
Preference number: 6 (lower is better) Translates to: DFICRTWLGLVM*AVSEVLGFHHL Trigger: AAGGTGGTGAAACCCAAGGACTTCAGAGACAGCCAACATCACCAACCCCAGCCAAGTACGGCAGATGAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS CAA 90 bp | TCTCACAAAGACTTCATCTGCCGTACTTGGCTGGGGTTGGTGATGTaGGCTGTCTCTGAAGTCCTTGGGTTTCACCACCTTCATGAAGGC | + |
|
Preference number: 6 (lower is better) Translates to: SHKDFICRTWLGLVM*AVSEVLGFHHLHEG Trigger: GCCTTCATGAAGGTGGTGAAACCCAAGGACTTCAGAGACAGCCAACATCACCAACCCCAGCCAAGTACGGCAGATGAAGTCTTTGTGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS TCA 72 bp | ACAAAGACTTCATCTGCCGTACTTGGCTGGGGTTGGTaGTGTTGGCTGTCTCTGAAGTCCTTGGGTTTCACC | + |
|
Preference number: 6 (lower is better) Translates to: TKTSSAVLGWGW*CWLSLKSLGFT Trigger: GGTGAAACCCAAGGACTTCAGAGACAGCCAACATCACCAACCCCAGCCAAGTACGGCAGATGAAGTCTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
||
| CDS CAA 90 bp | TCCCGTTCTTGTCTGGTGACTTTCTGGGCATCCAGAAACTTCAACTaGGGCAGCTTGTGCAGAACAAAGCACCTCAAGAGGTTGAAGCTC | + |
|
Preference number: 6 (lower is better) Translates to: SRSCLVTFWASRNFN*GSLCRTKHLKRLKL Trigger: GAGCTTCAACCTCTTGAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTTGAAGTTTCTGGATGCCCAGAAAGTCACCAGACAAGAACGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161249.8 |
||
| CDS GCA 72 bp | AAGTCGGTAATTTGGTTCTTGTTGAGGGTTAAGGTGTaGAAGTGGGGTAACCCTGGCAACACGAGGTCGTCT | + |
|
Preference number: 6 (lower is better) Translates to: KSVIWFLLRVKV*KWGNPGNTRSS Trigger: AGACGACCTCGTGTTGCCAGGGTTACCCCACTTGCACACCTTAACCCTCAACAAGAACCAAATTACCGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
||
| CDS GCA 72 bp | TCAGTCCATTATCATCACGGTGGGAACATGGCAGCATaGAGCAGACATGATGCTTGGGTTTCACCACCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SVHYHHGGNMAA*SRHDAWVSPPS Trigger: TGAAGGTGGTGAAACCCAAGCATCATGTCTGCTGCATGCTGCCATGTTCCCACCGTGATGATAATGGACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162540.2 |
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| CDS CAA 72 bp | TCAAGGAGGTACTCCAAGTCGGTAATTTGGTTCTTGTaGAGGGTTAAGGTGTGCAAGTGGGGTAACCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SRRYSKSVIWFL*RVKVCKWGNPG Trigger: GCCAGGGTTACCCCACTTGCACACCTTAACCCTCAACAAGAACCAAATTACCGACTTGGAGTACCTCCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
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| CDS CAA 72 bp | TCTCACAAAGACTTCATCTGCCGTACTTGGCTGGGGTaGGTGATGTTGGCTGTCTCTGAAGTCCTTGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: SHKDFICRTWLG*VMLAVSEVLGF Trigger: AAACCCAAGGACTTCAGAGACAGCCAACATCACCAACCCCAGCCAAGTACGGCAGATGAAGTCTTTGTGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226003.2 |
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| CDS TCA 72 bp | CTGAGGTACTCTAAGGATGGTGTCACTTCTGCCAGGTaGTCAAGGAGGTACTCCAAGTCGGTAATTTGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LRYSKDGVTSAR*SRRYSKSVIWF Trigger: GAACCAAATTACCGACTTGGAGTACCTCCTTGATCACCTGGCAGAAGTGACACCATCCTTAGAGTACCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000075639.11 ENSMUST00000159777.8 ENSMUST00000162540.2 |
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| CDS CAA 90 bp | AACTTCAACTTGGGCAGCTTGTGCAGAACAAAGCACCTCAAGAGGTaGAAGCTCAGGTCAAGTCTCTTTGCAAAATGTCCAAAGTCCCGG | + |
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Preference number: 6 (lower is better) Translates to: NFNLGSLCRTKHLKR*KLRSSLFAKCPKSR Trigger: CCGGGACTTTGGACATTTTGCAAAGAGACTTGACCTGAGCTTCAACCTCTTGAGGTGCTTTGTTCTGCACAAGCTGCCCAAGTTGAAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161249.8 |
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