Pregenerated sensors for LRIT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000093865Ensembl transcript IDs: ENSMUST00000179187.2, ENSMUST00000185462.7
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTTCGAAAGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATTGTGGCAAGCTTCACTaGAAAATTCTTTATACAGAC | + |
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Preference number: 2 (lower is better) Translates to: LRKHFERSGPSALAGYANCGKLH*KILYTD Trigger: GTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACA...ATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCTTTCGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| 3UTR-3UTR CCA 90 bp | AGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTATGTCCCTAAAACTGTaGCAAGCTTCACTGGAAAAT | + |
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Preference number: 2 (lower is better) Translates to: STLNVQGRQPWLVMLMFFMSLKL*QASLEN Trigger: ATTTTCCAGTGAAGCTTGCCACAGTTTTAGGGACAT...AAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| 3UTR CCA 72 bp | TTCGAAAGCACTTTGAACGTTCAGGGCCGTCAGCCCTaGCTGGTTATGCTAATGTTCTTTCAATGTTCAAAA | + |
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Preference number: 3 (lower is better) Translates to: FESTLNVQGRQP*LVMLMFFQCSK Trigger: TTTTGAACATTGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCTTTCGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | ACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTACGGTGGCTCCCGCGTGGAGCAGGGGTGGCTaGTGGCTAGTCCTGGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: TWKSLQKSPNRGSTVAPAWSRGG*WLVLAV Trigger: CACCGCCAGGACTAGCCACCAGCCACCCCTGCTCCA...CGCGGGAGCCACCGTAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | CACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCAGGGGTGGAGCAGGGGTaGCTGGTGGCTAGTCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: HFERSGPSALAGYANVLSGVEQG*LVASPG Trigger: GCCAGGACTAGCCACCAGCCACCCCTGCTCCACCCC...TGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | ACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTACGGTGGCTCCCGCGAAGCAGCTGAGAAGATaGGAGGCAAGGAGGAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: TWKSLQKSPNRGSTVAPAKQLRR*EARRRE Trigger: CTCCCTCCTCCTTGCCTCCCATCTTCTCAGCTGCTT...CGCGGGAGCCACCGTAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | CTTCGAAAGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATAGGAAGGAGCGGAAGTaGGCCCGGGTGATAACCAGG | + |
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Preference number: 4 (lower is better) Translates to: LRKHFERSGPSALAGYANRKERK*ARVITR Trigger: CCTGGTTATCACCCGGGCTCACTTCCGCTCCTTCCT...ATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCTTTCGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | AGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCCTCCTAATCCTGGCTaGGGATGCTGCTCAGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: STLNVQGRQPWLVMLMFFPPNPG*GCCSGG Trigger: GCCCCCTGAGCAGCATCCCCAGCCAGGATTAGGAGG...AAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | AGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTACGTCAGCTGTGGGGTaGGGTGACCCTTGGCATCAC | + |
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Preference number: 4 (lower is better) Translates to: STLNVQGRQPWLVMLMFFTSAVG*GDPWHH Trigger: GTGATGCCAAGGGTCACCCCACCCCACAGCTGACGT...AAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | CGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCAATGTTCAAAAATCCTGGCTGGGGATaGTGCTCAGGGGGCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: RSGPSALAGYANVLSMFKNPGWG*CSGGSP Trigger: TGGAGAGCCCCCTGAGCAGCATCCCCAGCCAGGATT...TTTGAACATTGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | CACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCAGGTTGCAGAAGCAGCTaGGAAGATGGGAGGCAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: HFERSGPSALAGYANVLSGCRSS*EDGRQG Trigger: TCCTTGCCTCCCATCTTCTCAGCTGCTTCTGCAACC...TGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | TTGGTGATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTGAGCCGTCATGTCTaGCGTGATACTCACAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LVILTEHMEVSPKVTQQRLSRHV*RDTHRS Trigger: GCTCCTGTGAGTATCACGGCAGACATGACGGCTCAG...CCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATCACCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | TCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTACGGTGCTTTCTTACTTGCGCTaGGCGGAGGAAACTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: SQSTWKSLQKSPNRGSTVLSYLR*AEETSF Trigger: GAAGGAAGTTTCCTCCGCTCAGCGCAAGTAAGAAAG...CACCGTAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | ACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTACGGTGGCTCCCGCGAACCAGGGGTTGTCCTaGAAACCAAGAATAATTCTT | + |
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Preference number: 4 (lower is better) Translates to: TWKSLQKSPNRGSTVAPANQGLS*KPRIIL Trigger: AAGAATTATTCTTGGTTTGCAGGACAACCCCTGGTT...CGCGGGAGCCACCGTAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | TTGGTGATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGTCTCTATCTTCGCATTaGTTTTCCCACCGGGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LVILTEHMEVSPKVTQQRSLSSH*FSHRGG Trigger: TCCACCCCGGTGGGAAAAGCAATGCGAAGATAGAGA...CCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATCACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | ACCTTCGAAAGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTACTCTTCTTTCTTACTTaGGCTGAGCGGAGGAAACTT | + |
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Preference number: 4 (lower is better) Translates to: TFESTLNVQGRQPWLVMLLFFLT*AERRKL Trigger: AAGTTTCCTCCGCTCAGCGCAAGTAAGAAAGAAGAG...TAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCTTTCGAAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | CACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCACTTGTGTGCTGCTGCTaGTGTTCCACATCAGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: HFERSGPSALAGYANVLSLVCCC*CSTSES Trigger: TGACTCTGATGTGGAACAGCAGCAGCAGCACACAAG...TGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | GATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTAACTCTTGTGTGCTGCTaGTGCTGTTCCACATCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: DPHRAHGSLSKSHPTEALTLVCC*CCSTSE Trigger: CTCTGATGTGGAACAGCAGCAGCAGCACACAAGAGT...TAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | TTGGTGATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGAGGACTCTTGTGTGCTaGTGCTGCTGTTCCACATCA | + |
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Preference number: 4 (lower is better) Translates to: LVILTEHMEVSPKVTQQRRTLVC*CCCSTS Trigger: TGATGTGGAACAGCAGCAGCAGCACACAAGAGTCCT...CCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATCACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | CCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTCCAGCGTCCTCAGGTaGGGCATGTCCAGCAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: PKTVASFTGKFFIQTPCSSSVLR*GMSSRD Trigger: GTCTCTGCTGGACATGCCCCACCTGAGGACGCTGGA...ACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | CTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTAGCTGTGGGGTGGGGTaGCCCTTGGCATCACATCTC | + |
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Preference number: 4 (lower is better) Translates to: LKLWQASLENSLYRRHAVSCGVG*PLASHL Trigger: GAGATGTGATGCCAAGGGTCACCCCACCCCACAGCT...AACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | GGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCAATGTTCAAAATAGTCCAGAGGACTCTTGTGTaGTGCTGCTGCTGTTCCACA | + |
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Preference number: 4 (lower is better) Translates to: GPSALAGYANVLSMFKIVQRTLV*CCCCST Trigger: TGTGGAACAGCAGCAGCAGCACACAAGAGTCCTCTG...GACTATTTTGAACATTGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | CTTCGAAAGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATACAGCTCGATCACCTTaGAAATGTGACAGTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: LRKHFERSGPSALAGYANTARSP*KCDSHR Trigger: TCTGTGACTGTCACATTTCCAAGGTGATCGAGCTGT...ATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCTTTCGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | TTGGTGATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGGACGTTTGTTTCCATTaGCGCTGCCTGATCCAACAA | + |
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Preference number: 4 (lower is better) Translates to: LVILTEHMEVSPKVTQQRDVCFH*RCLIQQ Trigger: TTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTC...CCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATCACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | TCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTACGGTGTCTGATGCCTTCTCCTaGAGACTCCTGAATTACTGT | + |
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Preference number: 4 (lower is better) Translates to: SQSTWKSLQKSPNRGSTVSDAFS*RLLNYC Trigger: ACAGTAATTCAGGAGTCTCCAGGAGAAGGCATCAGA...CACCGTAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | CCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTACTCACAGGAGCACTaGGAAGGGCAGGTACCGTTC | + |
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Preference number: 4 (lower is better) Translates to: PKTVASFTGKFFIQTPCSYSQEH*EGQVPF Trigger: GAACGGTACCTGCCCTTCTCAGTGCTCCTGTGAGTA...ACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | CTTCGAAAGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATCCTCGTTTGGCACACTaGCTATTCTGTTATTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: LRKHFERSGPSALAGYANPRLAH*LFCYCV Trigger: TACACAATAACAGAATAGCCAGTGTGCCAAACGAGG...ATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCTTTCGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | CCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTAATCTGGTGGCAGCGTaGTCAGTCGGTTGCTCGACA | + |
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Preference number: 4 (lower is better) Translates to: PKTVASFTGKFFIQTPCSNLVAA*SVGCST Trigger: TGTCGAGCAACCGACTGACCACGCTGCCACCAGATT...ACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | ATTGGTGATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTAGGCCATTTATaGTTGCCTGGTTCTTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: IGDPHRAHGSLSKSHPTEALGHL*LPGSCH Trigger: ATGGCAAGAACCAGGCAACCATAAATGGCCTAGAGC...CTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATCACCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | AGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTTCCCTGCCAGATTTTTaGCTTTACACCTGTAATCCC | + |
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Preference number: 4 (lower is better) Translates to: STLNVQGRQPWLVMLMFFSLPDF*LYTCNP Trigger: GGGATTACAGGTGTAAAGCCAAAAATCTGGCAGGGA...AAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | CTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTACACATGCCACATACTaGCTTCCGGGCTCTAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LKLWQASLENSLYRRHAVTHATY*LPGSRP Trigger: TGGCCTAGAGCCCGGAAGTCAGTATGTGGCATGTGT...AACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | CCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTGCTGGTTTGTACACTaGTGGTTGCAGAAGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: PKTVASFTGKFFIQTPCSCWFVH*WLQKQL Trigger: CAGCTGCTTCTGCAACCACCAGTGTACAAACCAGCA...ACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | AGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTGACAGGGTCTCAAATTaGATATATGTCTCTTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: STLNVQGRQPWLVMLMFFDRVSN*IYVSFD Trigger: GTCAAAAGAGACATATATCCAATTTGAGACCCTGTC...AAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | TCCCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCACTATACTCTGTGACCTaGGTGACAGGGTCTCAAATT | + |
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Preference number: 4 (lower is better) Translates to: SLKLWQASLENSLYRRHALYSVT*VTGSQI Trigger: AATTTGAGACCCTGTCACCCAGGTCACAGAGTATAG...TGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR CCA 90 bp | GAACTGGATGTCCCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGTCCAACTCTACCCTCTaGAACAAGATTCCTTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ELDVPKTVASFTGKFFIQSNSTL*NKIPWK Trigger: CTTCCAAGGAATCTTGTTCCAGAGGGTAGAGTTGGA...CTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGGGACATCCAGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR GCA 90 bp | CTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTAGCTTCCGAAATCCCTaGCAGATTTTTGGCTTTACA | + |
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Preference number: 4 (lower is better) Translates to: LKLWQASLENSLYRRHAVSFRNP*QIFGFT Trigger: TGTAAAGCCAAAAATCTGGCAGGGATTTCGGAAGCT...AACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS-3UTR TCA 90 bp | CTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTTGATATATGTCTCTTTTaGCAAATCCTCTTCCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LKLWQASLENSLYRRHAVDICLF*QILFPE Trigger: TTCTGGGAAGAGGATTTGTCAAAAGAGACATATATC...AACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS GCA 90 bp | GGTACTGCAGCTCCACCAGGTAGTAGAAGGCCTCGGCGGGGAGCCTaGGGACCACAGTCTTCTCTATGCGAAGCTTCGAGGTGTCCACGG | + |
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Preference number: 5 (lower is better) Translates to: GTAAPPGSRRPRRGA*GPQSSLCEASRCPR Trigger: CCGTGGACACCTCGAAGCTTCGCATAGAGAAGACTGTGGTCCGCAGGCTCCCCGCCGAGGCCTTCTACTACCTGGTGGAGCTGCAGTACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 90 bp | AGTAGAAGGCCTCGGCGGGGAGCCTGCGGACCACAGTCTTCTCTATaGGAAGCTTCGAGGTGTCCACGGGGAAGTTTGCTGGGACTTCGT | + |
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Preference number: 5 (lower is better) Translates to: SRRPRRGACGPQSSL*EASRCPRGSLLGLR Trigger: ACGAAGTCCCAGCAAACTTCCCCGTGGACACCTCGAAGCTTCGCATAGAGAAGACTGTGGTCCGCAGGCTCCCCGCCGAGGCCTTCTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 90 bp | ACACTTGACTGGGAGCATAGCAGCAACCTCTCGCCATCGTCTCTGTaGCTCCGGGTCCAGAGCTCCCCTATACTCTGTGACCTGGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: TLDWEHSSNLSPSSL*LRVQSSPILCDLGD Trigger: GTCACCCAGGTCACAGAGTATAGGGGAGCTCTGGACCCGGAGGCACAGAGACGATGGCGAGAGGTTGCTGCTATGCTCCCAGTCAAGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS TCA 90 bp | ACTGTGGAGCCGTCGGATCTGGTCCACGTCAGCTGTGGGGTGGGGTaGCCCTTGGCATCACATCTCAGCAGAACATTACTACCCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: TVEPSDLVHVSCGVG*PLASHLSRTLLPRA Trigger: TGCTCTGGGTAGTAATGTTCTGCTGAGATGTGATGCCAAGGGTCACCCCACCCCACAGCTGACGTGGACCAGATCCGACGGCTCCACAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS TCA 90 bp | CTTCTCGGTGGAAAGTCCGGGCTTCTAGACGGTGTCACGGCTAAATaGGACCAGCTGTCTAGGAAATCTGGTGGCAGCGTGGTCAGTCGG | + |
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Preference number: 5 (lower is better) Translates to: LLGGKSGLLDGVTAK*DQLSRKSGGSVVSR Trigger: CCGACTGACCACGCTGCCACCAGATTTCCTAGACAGCTGGTCTCATTTAGCCGTGACACCGTCTAGAAGCCCGGACTTTCCACCGAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS TCA 90 bp | TCCTCCCGGGGACCCACTCCTTTTGGACAGACACATGCCACATACTaGCTTCCGGGCTCTAGGCCATTTATGGTTGCCTGGTTCTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SSRGPTPFGQTHATY*LPGSRPFMVAWFLP Trigger: TGGCAAGAACCAGGCAACCATAAATGGCCTAGAGCCCGGAAGTCAGTATGTGGCATGTGTCTGTCCAAAAGGAGTGGGTCCCCGGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CCA 90 bp | CTACAGCCATCGCTCTTAAGATTCATCTGGGAGTCCACACTTGACTaGGAGCATAGCAGCAACCTCTCGCCATCGTCTCTGTGCCTCCGG | + |
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Preference number: 5 (lower is better) Translates to: LQPSLLRFIWESTLD*EHSSNLSPSSLCLR Trigger: CCGGAGGCACAGAGACGATGGCGAGAGGTTGCTGCTATGCTCCCAGTCAAGTGTGGACTCCCAGATGAATCTTAAGAGCGATGGCTGTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CCA 90 bp | GGCACACTGGCTATTCTGTTATTGTGTAAGTCCAGCGTCCTCAGGTaGGGCATGTCCAGCAGAGACACCCAAGGGAAAGCGGTCAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: GTLAILLLCKSSVLR*GMSSRDTQGKAVRE Trigger: TTCTCTGACCGCTTTCCCTTGGGTGTCTCTGCTGGACATGCCCCACCTGAGGACGCTGGACTTACACAATAACAGAATAGCCAGTGTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS-3UTR CAA 90 bp | ACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTACGGTGGCTCCCGCGCGCCCCTCAACTCTGTaGGTAGAAAAGGTGATACAC | + |
|
Preference number: 5 (lower is better) Translates to: TWKSLQKSPNRGSTVAPARPSTL*VEKVIH Trigger: GTGTATCACCTTTTCTACCAACAGAGTTGAGGGGCG...CGCGGGAGCCACCGTAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS GCA 90 bp | CCAGGTCGTTACACAACACTAACCTTGATCCTGAGCCGTCATGTCTaGCGTGATACTCACAGGAGCACTGAGAAGGGCAGGTACCGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: PGRYTTLTLILSRHV*RDTHRSTEKGRYRS Trigger: TGAACGGTACCTGCCCTTCTCAGTGCTCCTGTGAGTATCACGGCAGACATGACGGCTCAGGATCAAGGTTAGTGTTGTGTAACGACCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 90 bp | CAGGATTTAGATGGAGGTGTTGATCCTCCTAATCCTGGCTGGGGATaGTGCTCAGGGGGCTCTCCAGGACTTCTTTCTGAACTGTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: QDLDGGVDPPNPGWG*CSGGSPGLLSELSG Trigger: ACCAGACAGTTCAGAAAGAAGTCCTGGAGAGCCCCCTGAGCAGCATCCCCAGCCAGGATTAGGAGGATCAACACCTCCATCTAAATCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS CCA 90 bp | TGTATAGTTAACTGTGGAGCCGTCGGATCTGGTCCACGTCAGCTGTaGGGTGGGGTGACCCTTGGCATCACATCTCAGCAGAACATTACT | + |
|
Preference number: 5 (lower is better) Translates to: CIVNCGAVGSGPRQL*GGVTLGITSQQNIT Trigger: AGTAATGTTCTGCTGAGATGTGATGCCAAGGGTCACCCCACCCCACAGCTGACGTGGACCAGATCCGACGGCTCCACAGTTAACTATACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS TCA 90 bp | CAGCTGCCTCAGGTTATAGAAGCTACTGGTTTCTATGCTGGCCACTaGGTTGTAAGCCAGCCAGAGGTACTGCAGCTCCACCAGGTAGTA | + |
|
Preference number: 5 (lower is better) Translates to: QLPQVIEATGFYAGH*VVSQPEVLQLHQVV Trigger: TACTACCTGGTGGAGCTGCAGTACCTCTGGCTGGCTTACAACTCAGTGGCCAGCATAGAAACCAGTAGCTTCTATAACCTGAGGCAGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | AGCACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTGGGGACCCACTCCTTTaGGACAGACACATGCCACAT | + |
|
Preference number: 5 (lower is better) Translates to: STLNVQGRQPWLVMLMFFGDPLL*DRHMPH Trigger: ATGTGGCATGTGTCTGTCCAAAAGGAGTGGGTCCCC...AAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS GCA 90 bp | CATTGGCGCTGCCTGATCCAACAACGCCAACTCTTCTTTCTTACTTaGGCTGAGCGGAGGAAACTTCCTTCCGTTCTTCTCTATCTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: HWRCLIQQRQLFFLT*AERRKLPSVLLYLR Trigger: GCGAAGATAGAGAAGAACGGAAGGAAGTTTCCTCCGCTCAGCGCAAGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 90 bp | GGCCACCCTGAGGTCTTTGATAGTGACGTTTGTTTCCATTGGCGCTaGCTGATCCAACAACGCCAACTCTTCTTTCTTACTTGCGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: GHPEVFDSDVCFHWR*LIQQRQLFFLTCAE Trigger: CTCAGCGCAAGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTCACTATCAAAGACCTCAGGGTGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 90 bp | CATACTGACTTCCGGGCTCTAGGCCATTTATGGTTGCCTGGTTCTTaGCATAGTCGTCTGCATTCACTAACAGCAGGTCCTTCTCACCGT | + |
|
Preference number: 5 (lower is better) Translates to: HTDFRALGHLWLPGS*HSRLHSLTAGPSHR Trigger: ACGGTGAGAAGGACCTGCTGTTAGTGAATGCAGACGACTATGGCAAGAACCAGGCAACCATAAATGGCCTAGAGCCCGGAAGTCAGTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 90 bp | CATCCAAACGCAACTCGTGCAGCTGCCTCAGGTTATAGAAGCTACTaGTTTCTATGCTGGCCACTGAGTTGTAAGCCAGCCAGAGGTACT | + |
|
Preference number: 5 (lower is better) Translates to: HPNATRAAASGYRSY*FLCWPLSCKPARGT Trigger: AGTACCTCTGGCTGGCTTACAACTCAGTGGCCAGCATAGAAACCAGTAGCTTCTATAACCTGAGGCAGCTGCACGAGTTGCGTTTGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS TCA 90 bp | ACCCTGAGGTCTTTGATAGTGACGTTTGTTTCCATTGGCGCTGCCTaGTCCAACAACGCCAACTCTTCTTTCTTACTTGCGCTGAGCGGA | + |
|
Preference number: 5 (lower is better) Translates to: TLRSLIVTFVSIGAA*SNNANSSFLLALSG Trigger: TCCGCTCAGCGCAAGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTCACTATCAAAGACCTCAGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 90 bp | TTCACGGGCCACCCTGAGGTCTTTGATAGTGACGTTTGTTTCCATTaGCGCTGCCTGATCCAACAACGCCAACTCTTCTTTCTTACTTGC | + |
|
Preference number: 5 (lower is better) Translates to: FTGHPEVFDSDVCFH*RCLIQQRQLFFLTC Trigger: GCAAGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTCACTATCAAAGACCTCAGGGTGGCCCGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 90 bp | CGTCTCTGTGCCTCCGGGTCCAGAGCTCCCCTATACTCTGTGACCTaGGTGACAGGGTCTCAAATTGGATATATGTCTCTTTTGACAAAT | + |
|
Preference number: 5 (lower is better) Translates to: RLCASGSRAPLYSVT*VTGSQIGYMSLLTN Trigger: ATTTGTCAAAAGAGACATATATCCAATTTGAGACCCTGTCACCCAGGTCACAGAGTATAGGGGAGCTCTGGACCCGGAGGCACAGAGACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | GTGATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTTTGTACACTGGTGGTaGCAGAAGCAGCTGAGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: VILTEHMEVSPKVTQQRLFVHWW*QKQLRR Trigger: TCTTCTCAGCTGCTTCTGCAACCACCAGTGTACAAA...GAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS TCA 90 bp | ACAGCGTGGTCGGTGACTTTCGACAGCTCGATCACCTTGGAAATGTaGCAGTCACAGAACCAGGGGTTGTCCTGCAAACCAAGAATAATT | + |
|
Preference number: 5 (lower is better) Translates to: TAWSVTFDSSITLEM*QSQNQGLSCKPRII Trigger: AATTATTCTTGGTTTGCAGGACAACCCCTGGTTCTGTGACTGTCACATTTCCAAGGTGATCGAGCTGTCGAAAGTCACCGACCACGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | GATCCTCACAGAGCACATGGAAGTCTCTCCAAAAGTCACCCAACAGAGGCTCTATACACAACACTAACCTaGATCCTGAGCCGTCATGTC | + |
|
Preference number: 5 (lower is better) Translates to: DPHRAHGSLSKSHPTEALYTTLT*ILSRHV Trigger: GACATGACGGCTCAGGATCAAGGTTAGTGTTGTGTA...TAGAGCCTCTGTTGGGTGACTTTTGGAGAGACTTCCATGTGCTCTGTGAGGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS GCA 90 bp | AACACCACCAACAACTGTCACAGTAACCACAGCTTCCGAAATCCCTaGCAGATTTTTGGCTTTACACCTGTAATCCCCAGCATCCTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: NTTNNCHSNHSFRNP*QIFGFTPVIPSILV Trigger: CACAAGGATGCTGGGGATTACAGGTGTAAAGCCAAAAATCTGGCAGGGATTTCGGAAGCTGTGGTTACTGTGACAGTTGTTGGTGGTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS CCA 90 bp | CAGAGCTCCCCTATACTCTGTGACCTGGGTGACAGGGTCTCAAATTaGATATATGTCTCTTTTGACAAATCCTCTTCCCAGAAAGGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: QSSPILCDLGDRVSN*IYVSFDKSSSQKGS Trigger: GGACCCTTTCTGGGAAGAGGATTTGTCAAAAGAGACATATATCCAATTTGAGACCCTGTCACCCAGGTCACAGAGTATAGGGGAGCTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 90 bp | AGAGATGCTGGTCAAGCTTATGATGGACCATCTGATGCCTTCTCCTaGAGACTCCTGAATTACTGTATAGTTAACTGTGGAGCCGTCGGA | + |
|
Preference number: 5 (lower is better) Translates to: RDAGQAYDGPSDAFS*RLLNYCIVNCGAVG Trigger: TCCGACGGCTCCACAGTTAACTATACAGTAATTCAGGAGTCTCCAGGAGAAGGCATCAGATGGTCCATCATAAGCTTGACCAGCATCTCT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | CCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGTAGTCACAGAGGACTCTaGTGTGCTGCTGCTGCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: PKTVASFTGKFFIQTPCSSHRGL*CAAAAV Trigger: AACAGCAGCAGCAGCACACAAGAGTCCTCTGTGACT...ACTGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | CACTTTGAACGTTCAGGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCAAGGGTCCGATGTGCATaGCAATTTGCAGACTTTATA | + |
|
Preference number: 5 (lower is better) Translates to: HFERSGPSALAGYANVLSRVRCA*QFADFI Trigger: TATAAAGTCTGCAAATTGCAATGCACATCGGACCCT...TGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCCTGAACGTTCAAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | GGGCCGTCAGCCCTGGCTGGTTATGCTAATGTTCTTTCAATGTTCAAAATAGTCAGAGCAGATGTGATTTaGGTAGCTGACATCATCACG | + |
|
Preference number: 5 (lower is better) Translates to: GPSALAGYANVLSMFKIVRADVI*VADIIT Trigger: CGTGATGATGTCAGCTACCAAAATCACATCTGCTCT...GACTATTTTGAACATTGAAAGAACATTAGCATAACCAGCCAGGGCTGACGGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS-3UTR CAA 90 bp | TCCCTAAAACTGTGGCAAGCTTCACTGGAAAATTCTTTATACAGACGCCATGCAGGATATATGTCTCTTTaGACAAATCCTCTTCCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: SLKLWQASLENSLYRRHAGYMSL*TNPLPR Trigger: TCTGGGAAGAGGATTTGTCAAAAGAGACATATATCC...TGCATGGCGTCTGTATAAAGAATTTTCCAGTGAAGCTTGCCACAGTTTTAGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS GCA 72 bp | CCTCGGCGGGGAGCCTGCGGACCACAGTCTTCTCTATaGGAAGCTTCGAGGTGTCCACGGGGAAGTTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: PRRGACGPQSSL*EASRCPRGSLL Trigger: CAGCAAACTTCCCCGTGGACACCTCGAAGCTTCGCATAGAGAAGACTGTGGTCCGCAGGCTCCCCGCCGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 72 bp | TGGGAGCATAGCAGCAACCTCTCGCCATCGTCTCTGTaGCTCCGGGTCCAGAGCTCCCCTATACTCTGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: WEHSSNLSPSSL*LRVQSSPILCD Trigger: GTCACAGAGTATAGGGGAGCTCTGGACCCGGAGGCACAGAGACGATGGCGAGAGGTTGCTGCTATGCTCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS TCA 72 bp | CCGTCGGATCTGGTCCACGTCAGCTGTGGGGTGGGGTaGCCCTTGGCATCACATCTCAGCAGAACATTACTA | + |
|
Preference number: 6 (lower is better) Translates to: PSDLVHVSCGVG*PLASHLSRTLL Trigger: TAGTAATGTTCTGCTGAGATGTGATGCCAAGGGTCACCCCACCCCACAGCTGACGTGGACCAGATCCGACGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | GGAGGTGTTGATCCTCCTAATCCTGGCTGGGGATGCTaGTCAGGGGGCTCTCCAGGACTTCTTTCTGAACTG | + |
|
Preference number: 6 (lower is better) Translates to: GGVDPPNPGWGC*SGGSPGLLSEL Trigger: CAGTTCAGAAAGAAGTCCTGGAGAGCCCCCTGAGCAGCATCCCCAGCCAGGATTAGGAGGATCAACACCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS TCA 72 bp | GGAAAGTCCGGGCTTCTAGACGGTGTCACGGCTAAATaGGACCAGCTGTCTAGGAAATCTGGTGGCAGCGTG | + |
|
Preference number: 6 (lower is better) Translates to: GKSGLLDGVTAK*DQLSRKSGGSV Trigger: CACGCTGCCACCAGATTTCCTAGACAGCTGGTCTCATTTAGCCGTGACACCGTCTAGAAGCCCGGACTTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CCA 72 bp | ATCTGGTCCACGTCAGCTGTGGGGTGGGGTGACCCTTaGCATCACATCTCAGCAGAACATTACTACCCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: IWSTSAVGWGDP*HHISAEHYYPE Trigger: CTCTGGGTAGTAATGTTCTGCTGAGATGTGATGCCAAGGGTCACCCCACCCCACAGCTGACGTGGACCAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CAA 72 bp | CTGACCGCCTCGTTTGGCACACTGGCTATTCTGTTATaGTGTAAGTCCAGCGTCCTCAGGTGGGGCATGTCC | + |
|
Preference number: 6 (lower is better) Translates to: LTASFGTLAILL*CKSSVLRWGMS Trigger: GGACATGCCCCACCTGAGGACGCTGGACTTACACAATAACAGAATAGCCAGTGTGCCAAACGAGGCGGTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS TCA 72 bp | GGACCCACTCCTTTTGGACAGACACATGCCACATACTaGCTTCCGGGCTCTAGGCCATTTATGGTTGCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: GPTPFGQTHATY*LPGSRPFMVAW Trigger: CCAGGCAACCATAAATGGCCTAGAGCCCGGAAGTCAGTATGTGGCATGTGTCTGTCCAAAAGGAGTGGGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | AATACAGCACAGTCACAGAGGACTCTTGTGTGCTGCTaGTGCTGTTCCACATCAGAGTCACACTCACGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: NTAQSQRTLVCC*CCSTSESHSRR Trigger: CCGGCGTGAGTGTGACTCTGATGTGGAACAGCAGCAGCAGCACACAAGAGTCCTCTGTGACTGTGCTGTATT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 72 bp | GATTTAGATGGAGGTGTTGATCCTCCTAATCCTGGCTaGGGATGCTGCTCAGGGGGCTCTCCAGGACTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: DLDGGVDPPNPG*GCCSGGSPGLL Trigger: AAGAAGTCCTGGAGAGCCCCCTGAGCAGCATCCCCAGCCAGGATTAGGAGGATCAACACCTCCATCTAAATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
||
| CDS CAA 90 bp | CTCAGATATCTGACCGCCTCGTTTGGCACACTGGCTATTCTGTTATaGTGTAAGTCCAGCGTCCTCAGGTGGGGCATGTCCAGCAGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: LRYLTASFGTLAILL*CKSSVLRWGMSSRD Trigger: GTCTCTGCTGGACATGCCCCACCTGAGGACGCTGGACTTACACAATAACAGAATAGCCAGTGTGCCAAACGAGGCGGTCAGATATCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 72 bp | TACACAACACTAACCTTGATCCTGAGCCGTCATGTCTaGCGTGATACTCACAGGAGCACTGAGAAGGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: YTTLTLILSRHV*RDTHRSTEKGR Trigger: CCTGCCCTTCTCAGTGCTCCTGTGAGTATCACGGCAGACATGACGGCTCAGGATCAAGGTTAGTGTTGTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 72 bp | GCAACTCGTGCAGCTGCCTCAGGTTATAGAAGCTACTaGTTTCTATGCTGGCCACTGAGTTGTAAGCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: ATRAAASGYRSY*FLCWPLSCKPA Trigger: GGCTGGCTTACAACTCAGTGGCCAGCATAGAAACCAGTAGCTTCTATAACCTGAGGCAGCTGCACGAGTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 72 bp | GCCTCCGGGTCCAGAGCTCCCCTATACTCTGTGACCTaGGTGACAGGGTCTCAAATTGGATATATGTCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: ASGSRAPLYSVT*VTGSQIGYMSL Trigger: AAGAGACATATATCCAATTTGAGACCCTGTCACCCAGGTCACAGAGTATAGGGGAGCTCTGGACCCGGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CAA 90 bp | CCACAGTCTTCTCTATGCGAAGCTTCGAGGTGTCCACGGGGAAGTTaGCTGGGACTTCGTTCATATCCAGGTCGTTACACAACACTAACC | + |
|
Preference number: 6 (lower is better) Translates to: PQSSLCEASRCPRGS*LGLRSYPGRYTTLT Trigger: GGTTAGTGTTGTGTAACGACCTGGATATGAACGAAGTCCCAGCAAACTTCCCCGTGGACACCTCGAAGCTTCGCATAGAGAAGACTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS TCA 72 bp | CAGGTTATAGAAGCTACTGGTTTCTATGCTGGCCACTaGGTTGTAAGCCAGCCAGAGGTACTGCAGCTCCAC | + |
|
Preference number: 6 (lower is better) Translates to: QVIEATGFYAGH*VVSQPEVLQLH Trigger: GTGGAGCTGCAGTACCTCTGGCTGGCTTACAACTCAGTGGCCAGCATAGAAACCAGTAGCTTCTATAACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 72 bp | CTCTATGCGAAGCTTCGAGGTGTCCACGGGGAAGTTTaGTGGGACTTCGTTCATATCCAGGTCGTTACACAA | + |
|
Preference number: 6 (lower is better) Translates to: LYAKLRGVHGEV*WDFVHIQVVTQ Trigger: TTGTGTAACGACCTGGATATGAACGAAGTCCCAGCAAACTTCCCCGTGGACACCTCGAAGCTTCGCATAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 72 bp | GCAGCTGCCTCAGGTTATAGAAGCTACTGGTTTCTATaGTGGCCACTGAGTTGTAAGCCAGCCAGAGGTACT | + |
|
Preference number: 6 (lower is better) Translates to: AAASGYRSYWFL*WPLSCKPARGT Trigger: AGTACCTCTGGCTGGCTTACAACTCAGTGGCCAGCATAGAAACCAGTAGCTTCTATAACCTGAGGCAGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS GCA 72 bp | TTCCGGGCTCTAGGCCATTTATGGTTGCCTGGTTCTTaGCATAGTCGTCTGCATTCACTAACAGCAGGTCCT | + |
|
Preference number: 6 (lower is better) Translates to: FRALGHLWLPGS*HSRLHSLTAGP Trigger: AGGACCTGCTGTTAGTGAATGCAGACGACTATGGCAAGAACCAGGCAACCATAAATGGCCTAGAGCCCGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 72 bp | TATGCGAAGCTTCGAGGTGTCCACGGGGAAGTTTGCTaGGACTTCGTTCATATCCAGGTCGTTACACAACAC | + |
|
Preference number: 6 (lower is better) Translates to: YAKLRGVHGEVC*DFVHIQVVTQH Trigger: GTGTTGTGTAACGACCTGGATATGAACGAAGTCCCAGCAAACTTCCCCGTGGACACCTCGAAGCTTCGCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 72 bp | GCTGCCTCAGGTTATAGAAGCTACTGGTTTCTATGCTaGCCACTGAGTTGTAAGCCAGCCAGAGGTACTGCA | + |
|
Preference number: 6 (lower is better) Translates to: AASGYRSYWFLC*PLSCKPARGTA Trigger: TGCAGTACCTCTGGCTGGCTTACAACTCAGTGGCCAGCATAGAAACCAGTAGCTTCTATAACCTGAGGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CCA 72 bp | TACTCCGTCCTACAGCCATCGCTCTTAAGATTCATCTaGGAGTCCACACTTGACTGGGAGCATAGCAGCAAC | + |
|
Preference number: 6 (lower is better) Translates to: YSVLQPSLLRFI*ESTLDWEHSSN Trigger: GTTGCTGCTATGCTCCCAGTCAAGTGTGGACTCCCAGATGAATCTTAAGAGCGATGGCTGTAGGACGGAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CAA 72 bp | TCTCTATGCGAAGCTTCGAGGTGTCCACGGGGAAGTTaGCTGGGACTTCGTTCATATCCAGGTCGTTACACA | + |
|
Preference number: 6 (lower is better) Translates to: SLCEASRCPRGS*LGLRSYPGRYT Trigger: TGTGTAACGACCTGGATATGAACGAAGTCCCAGCAAACTTCCCCGTGGACACCTCGAAGCTTCGCATAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
||
| CDS CAA 90 bp | AGACACATGCCACATACTGACTTCCGGGCTCTAGGCCATTTATGGTaGCCTGGTTCTTGCCATAGTCGTCTGCATTCACTAACAGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: RHMPHTDFRALGHLW*PGSCHSRLHSLTAG Trigger: ACCTGCTGTTAGTGAATGCAGACGACTATGGCAAGAACCAGGCAACCATAAATGGCCTAGAGCCCGGAAGTCAGTATGTGGCATGTGTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS TCA 72 bp | CCATCAGAGGATCAAGAAGAACAACAGCGTGGTCGGTaGCTTTCGACAGCTCGATCACCTTGGAAATGTGAC | + |
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Preference number: 6 (lower is better) Translates to: PSEDQEEQQRGR*LSTARSPWKCD Trigger: GTCACATTTCCAAGGTGATCGAGCTGTCGAAAGTCACCGACCACGCTGTTGTTCTTCTTGATCCTCTGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | TCTGGAACAAGATTCCTTGGAAGCGCTCGGGTTCACTaGAGACCATCAGAGGATCAAGAAGAACAACAGCGT | + |
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Preference number: 6 (lower is better) Translates to: SGTRFLGSARVH*RPSEDQEEQQR Trigger: ACGCTGTTGTTCTTCTTGATCCTCTGATGGTCTGCAGTGAACCCGAGCGCTTCCAAGGAATCTTGTTCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | TGCCTGATCCAACAACGCCAACTCTTCTTTCTTACTTaGGCTGAGCGGAGGAAACTTCCTTCCGTTCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: CLIQQRQLFFLT*AERRKLPSVLL Trigger: GAGAAGAACGGAAGGAAGTTTCCTCCGCTCAGCGCAAGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CCA 72 bp | CACCCTGAGGTCTTTGATAGTGACGTTTGTTTCCATTaGCGCTGCCTGATCCAACAACGCCAACTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: HPEVFDSDVCFH*RCLIQQRQLFF Trigger: AAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTCACTATCAAAGACCTCAGGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CAA 72 bp | CTCAGCAGAACATTACTACCCAGAGCAGATGTGATTTaGGTAGCTGACATCATCACGGACGGCTTCAGACAC | + |
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Preference number: 6 (lower is better) Translates to: LSRTLLPRADVI*VADIITDGFRH Trigger: GTGTCTGAAGCCGTCCGTGATGATGTCAGCTACCAAAATCACATCTGCTCTGGGTAGTAATGTTCTGCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CAA 90 bp | GCATCACATCTCAGCAGAACATTACTACCCAGAGCAGATGTGATTTaGGTAGCTGACATCATCACGGACGGCTTCAGACACTTTTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: ASHLSRTLLPRADVI*VADIITDGFRHFSN Trigger: GTTGGAAAAGTGTCTGAAGCCGTCCGTGATGATGTCAGCTACCAAAATCACATCTGCTCTGGGTAGTAATGTTCTGCTGAGATGTGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | AACAACTGTCACAGTAACCACAGCTTCCGAAATCCCTaGCAGATTTTTGGCTTTACACCTGTAATCCCCAGC | + |
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Preference number: 6 (lower is better) Translates to: NNCHSNHSFRNP*QIFGFTPVIPS Trigger: GCTGGGGATTACAGGTGTAAAGCCAAAAATCTGGCAGGGATTTCGGAAGCTGTGGTTACTGTGACAGTTGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000185462.7 |
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| CDS TCA 72 bp | TCTTTGATAGTGACGTTTGTTTCCATTGGCGCTGCCTaGTCCAACAACGCCAACTCTTCTTTCTTACTTGCG | + |
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Preference number: 6 (lower is better) Translates to: SLIVTFVSIGAA*SNNANSSFLLA Trigger: CGCAAGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTCACTATCAAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | GAGGTCTTTGATAGTGACGTTTGTTTCCATTGGCGCTaGCTGATCCAACAACGCCAACTCTTCTTTCTTACT | + |
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Preference number: 6 (lower is better) Translates to: EVFDSDVCFHWR*LIQQRQLFFLT Trigger: AGTAAGAAAGAAGAGTTGGCGTTGTTGGATCAGGCAGCGCCAATGGAAACAAACGTCACTATCAAAGACCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CAA 72 bp | TGGGTGACAGGGTCTCAAATTGGATATATGTCTCTTTaGACAAATCCTCTTCCCAGAAAGGGTCCGATGTGC | + |
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Preference number: 6 (lower is better) Translates to: WVTGSQIGYMSL*TNPLPRKGPMC Trigger: GCACATCGGACCCTTTCTGGGAAGAGGATTTGTCAAAAGAGACATATATCCAATTTGAGACCCTGTCACCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS CAA 90 bp | TCTGTGACCTGGGTGACAGGGTCTCAAATTGGATATATGTCTCTTTaGACAAATCCTCTTCCCAGAAAGGGTCCGATGTGCATTGCAATT | + |
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Preference number: 6 (lower is better) Translates to: SVTWVTGSQIGYMSL*TNPLPRKGPMCIAI Trigger: AATTGCAATGCACATCGGACCCTTTCTGGGAAGAGGATTTGTCAAAAGAGACATATATCCAATTTGAGACCCTGTCACCCAGGTCACAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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| CDS GCA 72 bp | CTTTTGACAAATCCTCTTCCCAGAAAGGGTCCGATGTaGATTGCAATTTGCAGACTTTATATAATAAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: LLTNPLPRKGPM*IAICRLYIIRN Trigger: GTTTCTTATTATATAAAGTCTGCAAATTGCAATGCACATCGGACCCTTTCTGGGAAGAGGATTTGTCAAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179187.2 ENSMUST00000185462.7 |
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