RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRIG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030029

Ensembl transcript IDs: ENSMUST00000032105.11, ENSMUST00000101126.3, ENSMUST00000204645.3

Found 389 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCCAACACCACGCCTGCATAGGTCTGGCCAGTGCACTCGAATCTaGCCACTAAGTGCCACACAGCCAAGATGCCCTCCTTTCCAACCG +
Preference number: 1 (lower is better)
Translates to: LPTPRLHRSGQCTRI*PLSATQPRCPPFQP
Trigger: CGGTTGGAAAGGAGGGCATCTTGGCTGTGTGGCACTTAGTGGTCAGATTCGAGTGCACTGGCCAGACCTATGCAGGCGTGGTGTTGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 90 bp CTGACTGACATTCCACACGGAAGTCGGACTGTCCGGAGTGACGTCTaGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCG +
Preference number: 1 (lower is better)
Translates to: LTDIPHGSRTVRSDV*TQAFHGLSYLFPVA
Trigger: CGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGTCCGACTTCCGTGTGGAATGTCAGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR GCA 90 bp TCCAACCGCCAGCAACAGCTGATGTGTTTACCTGAATTCCAGCTGTaGATTAAGGCACCAGAACGATTCCTGACCCTCTCCAAAATTAGA +
Preference number: 1 (lower is better)
Translates to: SNRQQQLMCLPEFQL*IKAPERFLTLSKIR
Trigger: TCTAATTTTGGAGAGGGTCAGGAATCGTTCTGGTGCCTTAATGCACAGCTGGAATTCAGGTAAACACATCAGCTGTTGCTGGCGGTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 90 bp AAAGACGAAAGGCAGTGCTTAATTGTTCTGAGCCATTGCATTTGGTaGATTAACAGCTCTCAATCTCGTCCTCAACTACAGACCCGTGCA +
Preference number: 1 (lower is better)
Translates to: KDERQCLIVLSHCIW*INSSQSRPQLQTRA
Trigger: TGCACGGGTCTGTAGTTGAGGACGAGATTGAGAGCTGTTAATCCACCAAATGCAATGGCTCAGAACAATTAAGCACTGCCTTTCGTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 90 bp AAGAAAGACGAAAGGCAGTGCTTAATTGTTCTGAGCCATTGCATTTaGTGGATTAACAGCTCTCAATCTCGTCCTCAACTACAGACCCGT +
Preference number: 1 (lower is better)
Translates to: KKDERQCLIVLSHCI*WINSSQSRPQLQTR
Trigger: ACGGGTCTGTAGTTGAGGACGAGATTGAGAGCTGTTAATCCACCAAATGCAATGGCTCAGAACAATTAAGCACTGCCTTTCGTCTTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 90 bp CAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATaGAGACTAGCCTTCTCAGCGTGCTTGCTCTGGCACAGTGATGGC +
Preference number: 1 (lower is better)
Translates to: QQIHIFCGSNINHQL*RLAFSACLLWHSDG
Trigger: GCCATCACTGTGCCAGAGCAAGCACGCTGAGAAGGCTAGTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCGCCACACAGCCAAGATaGCCTCCTTTCCAACCGCCA +
Preference number: 2 (lower is better)
Translates to: LTGKEQRGQACSAELSGPATQPR*PPFQPP
Trigger: TGGCGGTTGGAAAGGAGGGCATCTTGGCTGTGTGGC...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCAATCTGACCACTAAGTaGCACACAGCCAAGATGCCC +
Preference number: 2 (lower is better)
Translates to: LTGKEQRGQACSAELSGPNLTTK*HTAKMP
Trigger: GGGCATCTTGGCTGTGTGGCACTTAGTGGTCAGATT...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAAGTCTCTCACGTTTCTaGGCTCCAGATGCCACTCCT +
Preference number: 2 (lower is better)
Translates to: LENPQVPTLAASASLSFKSLSRF*APDATP
Trigger: AGGAGTGGCATCTGGAGCTCAGAAACGTGAGAGACT...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAACACCAGAACGATTCCTaGCCCTCTCCAAAATTAGAC +
Preference number: 2 (lower is better)
Translates to: LENPQVPTLAASASLSFKHQNDS*PSPKLD
Trigger: GTCTAATTTTGGAGAGGGTCAGGAATCGTTCTGGTG...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAGTCTCTCACGTTTCTaGGCTCCAGATGCCACTCCT +
Preference number: 2 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDSLSRF*APDATP
Trigger: AGGAGTGGCATCTGGAGCTCAGAAACGTGAGAGACT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCTTCCTCTTTCACATTaGCTCTCAGAAGCAGCAAAT +
Preference number: 2 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLPLSH*LSEAAN
Trigger: ATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAGGAGACAAGACATTTaGTTTTACCAAGTGAGTTAC +
Preference number: 2 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRRQDI*FYQVSY
Trigger: GTAACTCACTTGGTAAAAGCAAATGTCTTGTCTCCT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR TCA 72 bp GTCCTCAACTACAGACCCGTGCACCCTGCTCTACAGTaGGGCTGCCAACACCACGCCTGCATAGGTCTGGCC +
Preference number: 3 (lower is better)
Translates to: VLNYRPVHPALQ*GCQHHACIGLA
Trigger: GGCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACGGGTCTGTAGTTGAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR GCA 72 bp TCTCAATCTCGTCCTCAACTACAGACCCGTGCACCCTaGTCTACAGTGAGGCTGCCAACACCACGCCTGCAT +
Preference number: 3 (lower is better)
Translates to: SQSRPQLQTRAP*STVRLPTPRLH
Trigger: ATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACGGGTCTGTAGTTGAGGACGAGATTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 72 bp TTAGCGGGCCCTGGAGGCAGAGCTAACCCTCACTATTaGAAAATCCACAGGTACCAACACTGGCAGCCTCCG +
Preference number: 3 (lower is better)
Translates to: LAGPGGRANPHY*KIHRYQHWQPP
Trigger: CGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAATAGTGAGGGTTAGCTCTGCCTCCAGGGCCCGCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 72 bp ATTCCACACGGAAGTCGGACTGTCCGGAGTGACGTCTaGACACAAGCTTTCCACGGCCTCTCCTACCTCTTT +
Preference number: 3 (lower is better)
Translates to: IPHGSRTVRSDV*TQAFHGLSYLF
Trigger: AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGTCCGACTTCCGTGTGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCACTTTTTCCTGCCTTTaGTACACAAATAGTCTCTCA +
Preference number: 3 (lower is better)
Translates to: LTGKEQRGQACSAELSGPTFSCL*YTNSLS
Trigger: TGAGAGACTATTTGTGTACAAAAGGCAGGAAAAAGT...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR GCA 72 bp CAGCAACAGCTGATGTGTTTACCTGAATTCCAGCTGTaGATTAAGGCACCAGAACGATTCCTGACCCTCTCC +
Preference number: 3 (lower is better)
Translates to: QQQLMCLPEFQL*IKAPERFLTLS
Trigger: GGAGAGGGTCAGGAATCGTTCTGGTGCCTTAATGCACAGCTGGAATTCAGGTAAACACATCAGCTGTTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CCA 72 bp CACATATTTTGTGGAAGTAACATTAACCATCAACTATaGAGACTAGCCTTCTCAGCGTGCTTGCTCTGGCAC +
Preference number: 3 (lower is better)
Translates to: HIFCGSNINHQL*RLAFSACLLWH
Trigger: GTGCCAGAGCAAGCACGCTGAGAAGGCTAGTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGCTGGTGCAGGGCTGTaGGGCCATAGAGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGAGAGL*GHRGSH
Trigger: GTGGCTCCCTCTATGGCCTCACAGCCCTGCACCAGC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCCCCCCAGAGAGGGTATaGGACCCATCCGCAGTCCCA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGPPERV*DPSAVP
Trigger: TGGGACTGCGGATGGGTCTCATACCCTCTCTGGGGG...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCAGCCCGCGCCCACTaGAGTCCAGCGAGTCCCCGG +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFPARAH*SPASPR
Trigger: CCGGGGACTCGCTGGACTGCAGTGGGCGCGGGCTGG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCTCGCTGTGCCTGGCTaGCCACTGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPLAVPG*PLSLGT
Trigger: TGTGCCCAGAGACAGTGGGCAGCCAGGCACAGCGAG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCCTTGGCTGCTCGCTGTaGCTGGCTGCCCACTGTCTC +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGLGCSL*LAAHCL
Trigger: GAGACAGTGGGCAGCCAGGCACAGCGAGCAGCCAAG...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGCTGCCCACTGTCTCTaGGCACAGGCTGGGGATGGT +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGAAHCL*AQAGDG
Trigger: ACCATCCCCAGCCTGTGCCCAGAGACAGTGGGCAGC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCCGAGCCCCTGGAACGTaGGGCCTTCAATCAGCCGAA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGRAPGT*GLQSAE
Trigger: TTCGGCTGATTGAAGGCCTCACGTTCCAGGGGCTCG...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTTCTGCCAGGCAATCTaGGGGTTAGGGTGGCCCGTG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPFCQAI*GLGWPV
Trigger: CACGGGCCACCCTAACCCTCAGATTGCCTGGCAGAA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCTGGCTGCGGAGCATGTaGAACGGATGTCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGWLRSM*NGCPCP
Trigger: TGGGCAAGGACATCCGTTTCACATGCTCCGCAGCCA...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTGGCTGCGGAGCATGTaGAACGGATGTCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPWLRSM*NGCPCP
Trigger: TGGGCAAGGACATCCGTTTCACATGCTCCGCAGCCA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTCCTGGTCTGGTAGATaGTGCACACCCACACCAGCG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPSWSGR*CTPTPA
Trigger: CGCTGGTGTGGGTGTGCATCATCTACCAGACCAGGA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTCATTGGTGAGCTGCTaGTGCTGGCTGCGGAGCATG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPSLVSC*CWLRSM
Trigger: CATGCTCCGCAGCCAGCAGCAGCAGCTCACCAATGA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCTCATTGGTGAGCTGCTaGTGCTGGCTGCGGAGCATG +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGSLVSC*CWLRSM
Trigger: CATGCTCCGCAGCCAGCAGCAGCAGCTCACCAATGA...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCCGAGTTCTGGGCAGTaGAGCTGTAGACCCCCATGT +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPPSSGQ*SCRPPC
Trigger: ACATGGGGGTCTACAGCTGCACTGCCCAGAACTCGG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCCCGAGATCTCGTTATaGTCCAGGTCCAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPPEISL*SRSKTR
Trigger: GCGGGTCTTGGACCTGGACCATAACGAGATCTCGGG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCACGGAGAGTCAGCAGTaGCCGCGACAGACCATCAAA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGTESQQ*PRQTIK
Trigger: TTTGATGGTCTGTCGCGGTCACTGCTGACTCTCCGT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCTGGTGCAGGGCTGTaGGGCCATAGAGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVAGAGL*GHRGSH
Trigger: GTGGCTCCCTCTATGGCCTCACAGCCCTGCACCAGC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCCGGTCATGCTGCCTaGGCTCTTGGCTGCTCGCTG +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFPGHAA*ALGCSL
Trigger: CAGCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTACCCGGTCATGCTGCCTaGGCTCTTGGCTGCTCGCTG +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVPGHAA*ALGCSL
Trigger: CAGCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGG...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCATATGGCGTCTTCCATaGGCTCTGGGCTGCCTGAAG +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGIWRLP*ALGCLK
Trigger: CTTCAGGCAGCCCAGAGCTCATGGAAGACGCCATAT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTGCGTCGCTCACGAGCTaGCGGGAAATCGGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFASLTS*REIGAS
Trigger: GGAGGCACCGATTTCCCGGCAGCTCGTGAGCGACGC...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTGGAGTCACAGGCCTTaGGGAGGTGGCCATTGGAAA +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPWSHRP*GGGHWK
Trigger: TTTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCTCAGCCTGGGTAGCTTaGACGCTTTCACAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGSAWVA*TLSQEA
Trigger: AGCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGA...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTCGTGCCCAAAGGTaGCGTGACGGAGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFPRAQR*RDGGAG
Trigger: TCCTGCACCTCCGTCACGTCACCTTTGGGCACGAGG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGCTGTCACAAAGGCCTaGAGCATCCTACCCATTAGC +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGAVTKA*SILPIS
Trigger: GCTAATGGGTAGGATGCTGCAGGCCTTTGTGACAGC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGCAGCACTGAGAAAATaGTCTGGCCCTTCAGCGACT +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGAALRK*SGPSAT
Trigger: AGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCGAGGCGGGCTGTGGTaGCAGTCCGGATGGCAATGT +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFRGGLW*QSGWQC
Trigger: ACATTGCCATCCGGACTGGCACCACAGCCCGCCTCG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTCGTCTGGCATAACATaGATGCGTCGCTCACGAGCT +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPSSGIT*MRRSRA
Trigger: AGCTCGTGAGCGACGCATGCATGTTATGCCAGACGA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGTGAGCCTGGCTTTGTaGGAGTATGTGGAGCCAAAG +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGVSLAL*EYVEPK
Trigger: CTTTGGCTCCACATACTCCCACAAAGCCAGGCTCAC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTTGCTGCCTGAGCTCTTaGCTGCTCGCTGTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFCCLSS*LLAVPG
Trigger: GCCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCA...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGATCTGCCCTTTCAGTaGCACAGATTCAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGDLPFQ*HRFRAG
Trigger: TCCAGCCCTGAATCTGTGCCACTGAAAGGGCAGATC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCTGATGTTGTTCCTCTaGAGCCTCAGCACCTCTAAG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPLMLFL*SLSTSK
Trigger: CTTAGAGGTGCTGAGGCTTCAGAGGAACAACATCAG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCCCGGTCATGCTGCCTaGGCTCTTGGCTGCTCGCTG +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELPGHAA*ALGCSL
Trigger: CAGCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCGACAGACCATCAAATaGTCCAGACTCCAGGATGCT +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPRQTIK*SRLQDA
Trigger: AGCATCCTGGAGTCTGGAGCATTTGATGGTCTGTCG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCCCTTCAGCGACTCTaGATGGGCACAGGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVALQRL*MGTGGC
Trigger: ACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTGCCCTTCAGCGACTCTaGATGGGCACAGGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFALQRL*MGTGGC
Trigger: ACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGC...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCACTGAGAAAATGCTCTaGCCCTTCAGCGACTCTGGA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGTEKML*PFSDSG
Trigger: TCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCGGTAAAATGCTCAGCTaGCTATGTGCTCGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPGKMLS*LCARSV
Trigger: CACTGAGCGAGCACATAGCCAGCTGAGCATTTTACC...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTTTCAATGTGCCCATTaGCCTGATGACCACCCTCAG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPFQCAH*PDDHPQ
Trigger: CTGAGGGTGGTCATCAGGCCAATGGGCACATTGAAA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGGCTGCTCGCTGTGCCTaGCTGCCCACTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELAARCA*LPTVSG
Trigger: CCCAGAGACAGTGGGCAGCCAGGCACAGCGAGCAGC...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGGCTGCTCGCTGTGCCTaGCTGCCCACTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQAARCA*LPTVSG
Trigger: CCCAGAGACAGTGGGCAGCCAGGCACAGCGAGCAGC...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS-3UTR TCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTGGTGCAGGGCTGTaGGGCCATAGAGGGAGCCAC +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAAGAGL*GHRGSH
Trigger: GTGGCTCCCTCTATGGCCTCACAGCCCTGCACCAGC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCCCCCAGAGAGGGTATaGGACCCATCCGCAGTCCCA +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELPPERV*DPSAVP
Trigger: TGGGACTGCGGATGGGTCTCATACCCTCTCTGGGGG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTACCCTCCGTTTCCCAGTaGTCTGCCCTTTCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVPSVSQ*SALSVA
Trigger: TGCCACTGAAAGGGCAGATCACTGGGAAACGGAGGG...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCCTCCGTTTCCCAGTaGTCTGCCCTTTCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFPSVSQ*SALSVA
Trigger: TGCCACTGAAAGGGCAGATCACTGGGAAACGGAGGG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCTGACTCCGGCCATTaGAGTAGCAGCAAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVADSGH*SSSKSS
Trigger: GCTGCTCTTGCTGCTACTGCAATGGCCGGAGTCAGC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCTGGACAGACCTGATTaGATTCTCTCCAAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPLDRPD*ILSKVQ
Trigger: CTGAACCTTGGAGAGAATGCAATCAGGTCTGTCCAG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGCGTCGCTCACGAGCTaGCGGGAAATCGGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKASLTS*REIGAS
Trigger: GGAGGCACCGATTTCCCGGCAGCTCGTGAGCGACGC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTGCTCGCTGTGCCTaGCTGCCCACTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAAARCA*LPTVSG
Trigger: CCCAGAGACAGTGGGCAGCCAGGCACAGCGAGCAGC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGTGCTGCCTGAGCTCTTaGCTGCTCGCTGTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQCCLSS*LLAVPG
Trigger: GCCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCA...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS-3UTR CCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTGCACAGATTCAGGGCTaGAGTCACAGGCCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFAQIQG*SHRPWG
Trigger: TCCCCAAGGCCTGTGACTCCAGCCCTGAATCTGTGC...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCAGCTCCGAATTTCCGTaGTGTTGTTGGAACTCAGAT +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGSSEFP*CCWNSD
Trigger: ATCTGAGTTCCAACAACATCACGGAAATTCGGAGCT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCAGCTCCGAATTTCCGTaGTGTTGTTGGAACTCAGAT +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPSSEFP*CCWNSD
Trigger: ATCTGAGTTCCAACAACATCACGGAAATTCGGAGCT...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTGCTGTCTGGCAGCACTaGGAAAATGCTCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFAVWQH*ENALAL
Trigger: AAGGGCCAGAGCATTTTCTCAGTGCTGCCAGACAGC...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAACCCCCAGAGAGGGTATaGGACCCATCCGCAGTCCCA +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKPPERV*DPSAVP
Trigger: TGGGACTGCGGATGGGTCTCATACCCTCTCTGGGGG...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCAAAGTTCTCCATGTCTaGATTGGCCAGGACCTCATT +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGKVLHV*IGQDLI
Trigger: AATGAGGTCCTGGCCAATGCAGACATGGAGAACTTT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTCAGCTGGCTATGTaGTCGCTCAGTGCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAAQLAM*SLSAQG
Trigger: CCCCTGGGCACTGAGCGAGCACATAGCCAGCTGAGC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAGCTCAGCTGGCTATGTaGTCGCTCAGTGCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKAQLAM*SLSAQG
Trigger: CCCCTGGGCACTGAGCGAGCACATAGCCAGCTGAGC...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCTCAGACACACACCATTaGTTTCAATGTGCCCATTGG +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGSDTHH*FQCAHW
Trigger: CCAATGGGCACATTGAAAGCAATGGTGTGTGTCTGA...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTCAGACACACACCATTaGTTTCAATGTGCCCATTGG +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPSDTHH*FQCAHW
Trigger: CCAATGGGCACATTGAAAGCAATGGTGTGTGTCTGA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCGCAAAGGCATCAAACTaGACAGACCTGATTGCATTC +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPAKASN*TDLIAF
Trigger: GAATGCAATCAGGTCTGTCCAGTTTGATGCCTTTGC...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCGTAGCTTGGAACATCTaGAGGCACAATGGTTTCATC +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGVAWNI*RHNGFI
Trigger: GATGAAACCATTGTGCCTCCAGATGTTCCAAGCTAC...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAGCTGCCCACTGTCTCTaGGCACAGGCTGGGGATGGT +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKAAHCL*AQAGDG
Trigger: ACCATCCCCAGCCTGTGCCCAGAGACAGTGGGCAGC...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTTGGGGAGGTGGCCATTaGAAACAAGCAAGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFWGGGH*KQASAG
Trigger: CCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCA...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTATGGAGTCACAGGCCTTaGGGAGGTGGCCATTGGAAA +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVWSHRP*GGGHWK
Trigger: TTTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCA...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAACGAGCCCCTGGAACGTaGGGCCTTCAATCAGCCGAA +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKRAPGT*GLQSAE
Trigger: TTCGGCTGATTGAAGGCCTCACGTTCCAGGGGCTCG...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATTCTGCCAGGCAATCTaGGGGTTAGGGTGGCCCGTG +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKFCQAI*GLGWPV
Trigger: CACGGGCCACCCTAACCCTCAGATTGCCTGGCAGAA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCCCTCCGTTTCCCAGTaGTCTGCCCTTTCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELPSVSQ*SALSVA
Trigger: TGCCACTGAAAGGGCAGATCACTGGGAAACGGAGGG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGGCTGACTCCGGCCATTaGAGTAGCAGCAAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELADSGH*SSSKSS
Trigger: GCTGCTCTTGCTGCTACTGCAATGGCCGGAGTCAGC...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGAACTCAGGTTTAGGCTaGGCGTCCAGGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELNSGLG*ASRRAG
Trigger: ACCTGCCCTCCTGGACGCGCAGCCTAAACCTGAGTT...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAAGGTCATTGGTGAGCTaGTGCTGCTGGCTGCGGAGC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKRSLVS*CCWLRS
Trigger: GCTCCGCAGCCAGCAGCAGCAGCTCACCAATGACCT...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGGTCATTGGTGAGCTaGTGCTGCTGGCTGCGGAGC +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKRSLVS*CCWLRS
Trigger: GCTCCGCAGCCAGCAGCAGCAGCTCACCAATGACCT...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGCCGAGTTCTGGGCAGTaGAGCTGTAGACCCCCATGT +
Preference number: 4 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQPSSGQ*SCRPPC
Trigger: ACATGGGGGTCTACAGCTGCACTGCCCAGAACTCGG...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCTTGGAAACAAGCAAGTaGTGGGCTTCAGTAGATATG +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGLETSK*WASVDM
Trigger: CATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAA...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGAGAGACAACTCCTATaGAAGCAGCGCCCAGTGATG +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVERQLL*KQRPVM
Trigger: CATCACTGGGCGCTGCTTCCATAGGAGTTGTCTCTC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATTGCTGAGGTGCAGCTaGTGCAGGGCTGTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKLLRCS*CRAVRP
Trigger: TGGCCTCACAGCCCTGCACCAGCTGCACCTCAGCAA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTTTGCTGAGGTGCAGCTaGTGCAGGGCTGTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRALLRCS*CRAVRP
Trigger: TGGCCTCACAGCCCTGCACCAGCTGCACCTCAGCAA...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCCCTTCAGCGACTCTaGATGGGCACAGGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAALQRL*MGTGGC
Trigger: ACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCTATGTGGAGCCAAAGTaGTTTGTGATGATACACTGG +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGYVEPK*FVMIHW
Trigger: CCAGTGTATCATCACAAACCACTTTGGCTCCACATA...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGTGAGCCTGGCTTTGTaGGAGTATGTGGAGCCAAAG +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVVSLAL*EYVEPK
Trigger: CTTTGGCTCCACATACTCCCACAAAGCCAGGCTCAC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGGCTGTCTGGCAGCACTaGGAAAATGCTCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQAVWQH*ENALAL
Trigger: AAGGGCCAGAGCATTTTCTCAGTGCTGCCAGACAGC...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATGGCTGCGGAGCATGTaGAACGGATGTCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKWLRSM*NGCPCP
Trigger: TGGGCAAGGACATCCGTTTCACATGCTCCGCAGCCA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATGCCCAAAGGTGACGTaGCGGAGGTGCAGGATAGTG +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKCPKVT*RRCRIV
Trigger: CACTATCCTGCACCTCCGTCACGTCACCTTTGGGCA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGCTGACTCCGGCCATTaGAGTAGCAGCAAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKADSGH*SSSKSS
Trigger: GCTGCTCTTGCTGCTACTGCAATGGCCGGAGTCAGC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTAACTCAGGTTTAGGCTaGGCGTCCAGGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRANSGLG*ASRRAG
Trigger: ACCTGCCCTCCTGGACGCGCAGCCTAAACCTGAGTT...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCCTAAGGATCTTGTTGTaGTGCAAAAAGAGAGAGACA +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGLRILL*CKKRET
Trigger: TGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAG...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTACGACAGACCATCAAATaGTCCAGACTCCAGGATGCT +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVRQTIK*SRLQDA
Trigger: AGCATCCTGGAGTCTGGAGCATTTGATGGTCTGTCG...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCAAGGTTCTTCATCTTTaGAAAGGCATCAAACTGGAC +
Preference number: 4 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGKVLHL*KGIKLD
Trigger: GTCCAGTTTGATGCCTTTGCAAAGATGAAGAACCTT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTTCATTGGTGAGCTGCTaGTGCTGGCTGCGGAGCATG +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRASLVSC*CWLRSM
Trigger: CATGCTCCGCAGCCAGCAGCAGCAGCTCACCAATGA...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAACCGAGTTCTGGGCAGTaGAGCTGTAGACCCCCATGT +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKPSSGQ*SCRPPC
Trigger: ACATGGGGGTCTACAGCTGCACTGCCCAGAACTCGG...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTGACCACAGTTTCCTaGCGGTCAGAAAGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELLTTVS*RSERVP
Trigger: GGGAACCCTTTCTGACCGGCAGGAAACTGTGGTCAG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTCCCGAGATCTCGTTATaGTCCAGGTCCAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAPEISL*SRSKTR
Trigger: GCGGGTCTTGGACCTGGACCATAACGAGATCTCGGG...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAACCCGAGATCTCGTTATaGTCCAGGTCCAAGACCCGC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKPEISL*SRSKTR
Trigger: GCGGGTCTTGGACCTGGACCATAACGAGATCTCGGG...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGGCAGCCACTTGAGCTaGCAGTCACACAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAGSHLS*QSHRKL
Trigger: GAGCTTCCTGTGTGACTGCCAGCTCAAGTGGCTGCC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGGCAGCCACTTGAGCTaGCAGTCACACAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKGSHLS*QSHRKL
Trigger: GAGCTTCCTGTGTGACTGCCAGCTCAAGTGGCTGCC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGTTCAGCGACTCTGGATaGGCACAGGTGGCTGTCACA +
Preference number: 4 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQFSDSG*AQVAVT
Trigger: TGTGACAGCCACCTGTGCCCATCCAGAGTCGCTGAA...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAACTGAGAAAATGCTCTaGCCCTTCAGCGACTCTGGA +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVTEKML*PFSDSG
Trigger: TCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGT...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTATCTCCATGTCTGCATTaGCCAGGACCTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVSPCLH*PGPHCP
Trigger: AGGACAATGAGGTCCTGGCCAATGCAGACATGGAGA...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCGGATGGCAATGTCATaGGGTATTTTAGTGAATGAT +
Preference number: 4 (lower is better)
Translates to: LTGKEQRGQACSAELSGPRMAMS*GILVND
Trigger: ATCATTCACTAAAATACCCCATGACATTGCCATCCG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGGTAAAATGCTCAGCTaGCTATGTGCTCGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVGKMLS*LCARSV
Trigger: CACTGAGCGAGCACATAGCCAGCTGAGCATTTTACC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTATTTCAATGTGCCCATTaGCCTGATGACCACCCTCAG +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVFQCAH*PDDHPQ
Trigger: CTGAGGGTGGTCATCAGGCCAATGGGCACATTGAAA...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAACGGAGAGTCAGCAGTaGCCGCGACAGACCATCAAA +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKTESQQ*PRQTIK
Trigger: TTTGATGGTCTGTCGCGGTCACTGCTGACTCTCCGT...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAACACCACAGCAATGGTaGAGATGCCTACGGTGGTCC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKTPQQW*RCLRWS
Trigger: GGACCACCGTAGGCATCTTCACCATTGCTGTGGTGT...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTATATGGCGTCTTCCATaGGCTCTGGGCTGCCTGAAG +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAIWRLP*ALGCLK
Trigger: CTTCAGGCAGCCCAGAGCTCATGGAAGACGCCATAT...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGTCGTCTGGCATAACATaGATGCGTCGCTCACGAGCT +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELSSGIT*MRRSRA
Trigger: AGCTCGTGAGCGACGCATGCATGTTATGCCAGACGA...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGCTCAGCTGGCTATGTaGTCGCTCAGTGCCCAGGGG +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPAQLAM*SLSAQG
Trigger: CCCCTGGGCACTGAGCGAGCACATAGCCAGCTGAGC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTCTGACCACAGTTTCCTaGCGGTCAGAAAGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRALTTVS*RSERVP
Trigger: GGGAACCCTTTCTGACCGGCAGGAAACTGTGGTCAG...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAAGGCTGTGTCAGTACTaGAGTCACTACATACAGCAG +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVRLCQY*SHYIQQ
Trigger: CTGCTGTATGTAGTGACTGCAGTACTGACACAGCCT...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGAGGTACGACTTCAGCTaGCTCCCATCCACACTAAGG +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELRYDFS*LPSTLR
Trigger: CCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTACCT...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTGCTTTCACAGGAAGCTaGGTGATCCTGTTTTTGCTC +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFAFTGS*VILFLL
Trigger: GAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGC...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCCTGGAGTGAAATGGTaGCGCTCTGTGAGGCTCAAT +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELPGVKW*RSVRLN
Trigger: ATTGAGCCTCACAGAGCGCCACCATTTCACTCCAGG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATGGGGAGGTGGCCATTaGAAACAAGCAAGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKWGGGH*KQASAG
Trigger: CCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTTGGAGTCACAGGCCTTaGGGAGGTGGCCATTGGAAA +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAWSHRP*GGGHWK
Trigger: TTTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCA...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGGATCTGCCCTTTCAGTaGCACAGATTCAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELDLPFQ*HRFRAG
Trigger: TCCAGCCCTGAATCTGTGCCACTGAAAGGGCAGATC...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAAGCTCCGAATTTCCGTaGTGTTGTTGGAACTCAGAT +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVSSEFP*CCWNSD
Trigger: ATCTGAGTTCCAACAACATCACGGAAATTCGGAGCT...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTTCAGCCTGGGTAGCTTaGACGCTTTCACAGGAAGCT +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRASAWVA*TLSQEA
Trigger: AGCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGA...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCAACACATTCACAGTaGGCCTGGCTTTGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAATHSQ*AWLCGS
Trigger: ACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCATTCTGCCAGGCAATCTaGGGGTTAGGGTGGCCCGTG +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPFCQAI*GLGWPV
Trigger: CACGGGCCACCCTAACCCTCAGATTGCCTGGCAGAA...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCCAGCCCGCGCCCACTaGAGTCCAGCGAGTCCCCGG +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFPARAH*SPASPR
Trigger: CCGGGGACTCGCTGGACTGCAGTGGGCGCGGGCTGG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGCTGTCACAAAGGCCTaGAGCATCCTACCCATTAGC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKAVTKA*SILPIS
Trigger: GCTAATGGGTAGGATGCTGCAGGCCTTTGTGACAGC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAGCAGCACTGAGAAAATaGTCTGGCCCTTCAGCGACT +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKAALRK*SGPSAT
Trigger: AGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGC...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAAAAGTTCTCCATGTCTaGATTGGCCAGGACCTCATT +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVKVLHV*IGQDLI
Trigger: AATGAGGTCCTGGCCAATGCAGACATGGAGAACTTT...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATCGTCTGGCATAACATaGATGCGTCGCTCACGAGCT +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKSSGIT*MRRSRA
Trigger: AGCTCGTGAGCGACGCATGCATGTTATGCCAGACGA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAGAGAGACAACTCCTATaGAAGCAGCGCCCAGTGATG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKERQLL*KQRPVM
Trigger: CATCACTGGGCGCTGCTTCCATAGGAGTTGTCTCTC...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGGTACGACTTCAGCTaGCTCCCATCCACACTAAGG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKRYDFS*LPSTLR
Trigger: CCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTACCT...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATCCTGTGCACGGACGTaGGCAAAGTTCTCCATGTCT +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKSCART*AKFSMS
Trigger: AGACATGGAGAACTTTGCCCACGTCCGTGCACAGGA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATCCTGTGCACGGACGTaGGCAAAGTTCTCCATGTCT +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKSCART*AKFSMS
Trigger: AGACATGGAGAACTTTGCCCACGTCCGTGCACAGGA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAACCTGGAGTGAAATGGTaGCGCTCTGTGAGGCTCAAT +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKPGVKW*RSVRLN
Trigger: ATTGAGCCTCACAGAGCGCCACCATTTCACTCCAGG...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAAACTCAGGTTTAGGCTaGGCGTCCAGGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPNSGLG*ASRRAG
Trigger: ACCTGCCCTCCTGGACGCGCAGCCTAAACCTGAGTT...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTGGACAGACCTGATTaGATTCTCTCCAAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELLDRPD*ILSKVQ
Trigger: CTGAACCTTGGAGAGAATGCAATCAGGTCTGTCCAG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGTATTCTGTCATGGTTaGTTGGATAGAGGGACCCCC +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKVFCHG*LDRGTP
Trigger: GGGGGTCCCTCTATCCAAGCAACCATGACAGAATAC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTTTGGAAACAAGCAAGTaGTGGGCTTCAGTAGATATG +
Preference number: 4 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFLETSK*WASVDM
Trigger: CATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAA...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGAACTCATGCAGCTTTTaGCAGAAGCTCCAGCCATCA +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELNSCSF*QKLQPS
Trigger: TGATGGCTGGAGCTTCTGCCAAAAGCTGCATGAGTT...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCACTGGATGGGCACAGGTaGCTGTCACAAAGGCCTGCA +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPLDGHR*LSQRPA
Trigger: TGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAG...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAATGGTCGTCTCAGGCTaGGTGATGATCTGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKMVVSG*VMICGF
Trigger: AAAGCCACAGATCATCACCCAGCCTGAGACGACCAT...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGGTAAAATGCTCAGCTaGCTATGTGCTCGCTCAGTG +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKGKMLS*LCARSV
Trigger: CACTGAGCGAGCACATAGCCAGCTGAGCATTTTACC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATTTCAATGTGCCCATTaGCCTGATGACCACCCTCAG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKFQCAH*PDDHPQ
Trigger: CTGAGGGTGGTCATCAGGCCAATGGGCACATTGAAA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGCACAGATTCAGGGCTaGAGTCACAGGCCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPAQIQG*SHRPWG
Trigger: TCCCCAAGGCCTGTGACTCCAGCCCTGAATCTGTGC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAACACCACAGCAATGGTaGAGATGCCTACGGTGGTCC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPTPQQW*RCLRWS
Trigger: GGACCACCGTAGGCATCTTCACCATTGCTGTGGTGT...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGGCTGTGTCAGTACTaGAGTCACTACATACAGCAG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKRLCQY*SHYIQQ
Trigger: CTGCTGTATGTAGTGACTGCAGTACTGACACAGCCT...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGATGATCTGTGGCTTTaGAAAGTCATCACACACAAA +
Preference number: 4 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVDDLWL*KVITHK
Trigger: TTTGTGTGTGATGACTTTCCAAAGCCACAGATCATC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCACCGGTTGCTTTGCACTaGAAGGCCACTGTTTCTCCC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPPVALH*KATVSP
Trigger: GGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGG...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGAAACAAGCAAGTGCTaGGCTTCAGTAGATATGGCG +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAETSKC*ASVDMA
Trigger: CGCCATATCTACTGAAGCCCAGCACTTGCTTGTTTC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGAAACAAGCAAGTGCTaGGCTTCAGTAGATATGGCG +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKETSKC*ASVDMA
Trigger: CGCCATATCTACTGAAGCCCAGCACTTGCTTGTTTC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGCTGTCACAAAGGCCTaGAGCATCCTACCCATTAGC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPAVTKA*SILPIS
Trigger: GCTAATGGGTAGGATGCTGCAGGCCTTTGTGACAGC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGCGTCGCTCACGAGCTaGCGGGAAATCGGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDASLTS*REIGAS
Trigger: GGAGGCACCGATTTCCCGGCAGCTCGTGAGCGACGC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATCAGACACACACCATTaGTTTCAATGTGCCCATTGG +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKSDTHH*FQCAHW
Trigger: CCAATGGGCACATTGAAAGCAATGGTGTGTGTCTGA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTCTGGGTGATGATCTGTaGCTTTGGAAAGTCATCACA +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRALGDDL*LWKVIT
Trigger: TGTGATGACTTTCCAAAGCCACAGATCATCACCCAG...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAACTGGGTGATGATCTGTaGCTTTGGAAAGTCATCACA +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKLGDDL*LWKVIT
Trigger: TGTGATGACTTTCCAAAGCCACAGATCATCACCCAG...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCCTCGTGCCCAAAGGTaGCGTGACGGAGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFPRAQR*RDGGAG
Trigger: TCCTGCACCTCCGTCACGTCACCTTTGGGCACGAGG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCACGACAGACCATCAAATaGTCCAGACTCCAGGATGCT +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPRQTIK*SRLQDA
Trigger: AGCATCCTGGAGTCTGGAGCATTTGATGGTCTGTCG...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGAAGGTTCTTCATCTTTaGAAAGGCATCAAACTGGAC +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELKVLHL*KGIKLD
Trigger: GTCCAGTTTGATGCCTTTGCAAAGATGAAGAACCTT...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCGAGGCGGGCTGTGGTaGCAGTCCGGATGGCAATGT +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRGGLW*QSGWQC
Trigger: ACATTGCCATCCGGACTGGCACCACAGCCCGCCTCG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCTCGCTGTGCCTGGCTaGCCACTGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLAVPG*PLSLGT
Trigger: TGTGCCCAGAGACAGTGGGCAGCCAGGCACAGCGAG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCTCGCTGTGCCTGGCTaGCCACTGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLAVPG*PLSLGT
Trigger: TGTGCCCAGAGACAGTGGGCAGCCAGGCACAGCGAG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCTTGGCTGCTCGCTGTaGCTGGCTGCCCACTGTCTC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLGCSL*LAAHCL
Trigger: GAGACAGTGGGCAGCCAGGCACAGCGAGCAGCCAAG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGTATTCTGTCATGGTTaGTTGGATAGAGGGACCCCC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPVFCHG*LDRGTP
Trigger: GGGGGTCCCTCTATCCAAGCAACCATGACAGAATAC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATTGGAAACAAGCAAGTaGTGGGCTTCAGTAGATATG +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKLETSK*WASVDM
Trigger: CATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAATGGTCGTCTCAGGCTaGGTGATGATCTGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPMVVSG*VMICGF
Trigger: AAAGCCACAGATCATCACCCAGCCTGAGACGACCAT...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCATCTCCATGTCTGCATTaGCCAGGACCTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPSPCLH*PGPHCP
Trigger: AGGACAATGAGGTCCTGGCCAATGCAGACATGGAGA...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATATGTGGAGCCAAAGTaGTTTGTGATGATACACTGG +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKYVEPK*FVMIHW
Trigger: CCAGTGTATCATCACAAACCACTTTGGCTCCACATA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCGGATGGCAATGTCATaGGGTATTTTAGTGAATGAT +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELRMAMS*GILVND
Trigger: ATCATTCACTAAAATACCCCATGACATTGCCATCCG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACTGCTGCCTGAGCTCTTaGCTGCTCGCTGTGCCTGGC +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDCCLSS*LLAVPG
Trigger: GCCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCA...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTTGTTCTTCAAGGATaGCAGTATTCTGTCATGGTT +
Preference number: 4 (lower is better)
Translates to: AFHGLSYLFPVATALKELLVLQG*QYSVMV
Trigger: AACCATGACAGAATACTGCCATCCTTGAAGAACAAG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCGAGCCCCTGGAACGTaGGGCCTTCAATCAGCCGAA +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRAPGT*GLQSAE
Trigger: TTCGGCTGATTGAAGGCCTCACGTTCCAGGGGCTCG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGGGTATTTTAGTGAATaGTGGCAACACATTCACAGT +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKGYFSE*WQHIHS
Trigger: ACTGTGAATGTGTTGCCATCATTCACTAAAATACCC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTAGGATCTTGTTGTGCTaGAAAAAGAGAGAGACAACT +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRARILLC*KKRETT
Trigger: AGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCT...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAACTAAGGATCTTGTTGTaGTGCAAAAAGAGAGAGACA +
Preference number: 4 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKLRILL*CKKRET
Trigger: TGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAG...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAACTAAGGATCTTGTTGTaGTGCAAAAAGAGAGAGACA +
Preference number: 4 (lower is better)
Translates to: LENPQVPTLAASASLSFKLRILL*CKKRET
Trigger: TGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAG...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCACTGGACAGACCTGATTaGATTCTCTCCAAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPLDRPD*ILSKVQ
Trigger: CTGAACCTTGGAGAGAATGCAATCAGGTCTGTCCAG...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAGGTCATTGGTGAGCTaGTGCTGCTGGCTGCGGAGC +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRSLVS*CCWLRS
Trigger: GCTCCGCAGCCAGCAGCAGCAGCTCACCAATGACCT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGCTTTCACAGGAAGCTaGGTGATCCTGTTTTTGCTC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPAFTGS*VILFLL
Trigger: GAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCTTGCTGAGGTGCAGCTaGTGCAGGGCTGTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLLRCS*CRAVRP
Trigger: TGGCCTCACAGCCCTGCACCAGCTGCACCTCAGCAA...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGATGATCTGTGGCTTTaGAAAGTCATCACACACAAA +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRADDLWL*KVITHK
Trigger: TTTGTGTGTGATGACTTTCCAAAGCCACAGATCATC...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTCGGATGGCAATGTCATaGGGTATTTTAGTGAATGAT +
Preference number: 4 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRARMAMS*GILVND
Trigger: ATCATTCACTAAAATACCCCATGACATTGCCATCCG...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACTGCCCAAAGGTGACGTaGCGGAGGTGCAGGATAGTG +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDCPKVT*RRCRIV
Trigger: CACTATCCTGCACCTCCGTCACGTCACCTTTGGGCA...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCTCCTGGTCTGGTAGATaGTGCACACCCACACCAGCG +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFSWSGR*CTPTPA
Trigger: CGCTGGTGTGGGTGTGCATCATCTACCAGACCAGGA...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAAAAGTTCTCCATGTCTaGATTGGCCAGGACCTCATT +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPKVLHV*IGQDLI
Trigger: AATGAGGTCCTGGCCAATGCAGACATGGAGAACTTT...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGCAAAGGCATCAAACTaGACAGACCTGATTGCATTC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPAKASN*TDLIAF
Trigger: GAATGCAATCAGGTCTGTCCAGTTTGATGCCTTTGC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGGCAGCCACTTGAGCTaGCAGTCACACAGGAAGCTC +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDGSHLS*QSHRKL
Trigger: GAGCTTCCTGTGTGACTGCCAGCTCAAGTGGCTGCC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCTGGATGGGCACAGGTaGCTGTCACAAAGGCCTGCA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLDGHR*LSQRPA
Trigger: TGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGTAGCTTGGAACATCTaGAGGCACAATGGTTTCATC +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPVAWNI*RHNGFI
Trigger: GATGAAACCATTGTGCCTCCAGATGTTCCAAGCTAC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGCTGTCTGGCAGCACTaGGAAAATGCTCTGGCCCTT +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDAVWQH*ENALAL
Trigger: AAGGGCCAGAGCATTTTCTCAGTGCTGCCAGACAGC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCACACCACAGCAATGGTaGAGATGCCTACGGTGGTCC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFTPQQW*RCLRWS
Trigger: GGACCACCGTAGGCATCTTCACCATTGCTGTGGTGT...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCTGACCACAGTTTCCTaGCGGTCAGAAAGGGTTCCC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLTTVS*RSERVP
Trigger: GGGAACCCTTTCTGACCGGCAGGAAACTGTGGTCAG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCTTCAGCGACTCTGGATaGGCACAGGTGGCTGTCACA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFFSDSG*AQVAVT
Trigger: TGTGACAGCCACCTGTGCCCATCCAGAGTCGCTGAA...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCCGGTTGCTTTGCACTaGAAGGCCACTGTTTCTCCC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFPVALH*KATVSP
Trigger: GGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACTGGGGAGGTGGCCATTaGAAACAAGCAAGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDWGGGH*KQASAG
Trigger: CCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCA...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGCAACACATTCACAGTaGGCCTGGCTTTGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDATHSQ*AWLCGS
Trigger: ACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGGGTATTTTAGTGAATaGTGGCAACACATTCACAGT +
Preference number: 4 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPGYFSE*WQHIHS
Trigger: ACTGTGAATGTGTTGCCATCATTCACTAAAATACCC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGCAGCACTGAGAAAATaGTCTGGCCCTTCAGCGACT +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFAALRK*SGPSAT
Trigger: AGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAGGTACGACTTCAGCTaGCTCCCATCCACACTAAGG +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRYDFS*LPSTLR
Trigger: CCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTACCT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCTCCTGTGCACGGACGTaGGCAAAGTTCTCCATGTCT +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFSCART*AKFSMS
Trigger: AGACATGGAGAACTTTGCCCACGTCCGTGCACAGGA...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGATCTGCCCTTTCAGTaGCACAGATTCAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFDLPFQ*HRFRAG
Trigger: TCCAGCCCTGAATCTGTGCCACTGAAAGGGCAGATC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCTGATGTTGTTCCTCTaGAGCCTCAGCACCTCTAAG +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLMLFL*SLSTSK
Trigger: CTTAGAGGTGCTGAGGCTTCAGAGGAACAACATCAG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGTATTCTGTCATGGTTaGTTGGATAGAGGGACCCCC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFVFCHG*LDRGTP
Trigger: GGGGGTCCCTCTATCCAAGCAACCATGACAGAATAC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACACTGAGAAAATGCTCTaGCCCTTCAGCGACTCTGGA +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDTEKML*PFSDSG
Trigger: TCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCTCTCCATGTCTGCATTaGCCAGGACCTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFSPCLH*PGPHCP
Trigger: AGGACAATGAGGTCCTGGCCAATGCAGACATGGAGA...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAGGCTGTGTCAGTACTaGAGTCACTACATACAGCAG +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRLCQY*SHYIQQ
Trigger: CTGCTGTATGTAGTGACTGCAGTACTGACACAGCCT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGCTTTCACAGGAAGCTaGGTGATCCTGTTTTTGCTC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFAFTGS*VILFLL
Trigger: GAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAACTCATGCAGCTTTTaGCAGAAGCTCCAGCCATCA +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDNSCSF*QKLQPS
Trigger: TGATGGCTGGAGCTTCTGCCAAAAGCTGCATGAGTT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGCAAAGGCATCAAACTaGACAGACCTGATTGCATTC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFAKASN*TDLIAF
Trigger: GAATGCAATCAGGTCTGTCCAGTTTGATGCCTTTGC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGTAGCTTGGAACATCTaGAGGCACAATGGTTTCATC +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFVAWNI*RHNGFI
Trigger: GATGAAACCATTGTGCCTCCAGATGTTCCAAGCTAC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
3UTR CAA 72 bp CTAAGCTTCAAAGAACCACTGAAGGAGACAAGACATTaGCTTTTACCAAGTGAGTTACAAAGAAAGACGAAA +
Preference number: 4 (lower is better)
Translates to: LSFKEPLKETRH*LLPSELQRKTK
Trigger: TTTCGTCTTTCTTTGTAACTCACTTGGTAAAAGCAAATGTCTTGTCTCCTTCAGTGGTTCTTTGAAGCTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR TCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGGGTATTTTAGTGAATaGTGGCAACACATTCACAGT +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDGYFSE*WQHIHS
Trigger: ACTGTGAATGTGTTGCCATCATTCACTAAAATACCC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR GCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACAGGATCTTGTTGTGCTaGAAAAAGAGAGAGACAACT +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDRILLC*KKRETT
Trigger: AGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGATGATCTGTGGCTTTaGAAAGTCATCACACACAAA +
Preference number: 4 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFDDLWL*KVITHK
Trigger: TTTGTGTGTGATGACTTTCCAAAGCCACAGATCATC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CCA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCTTGTTCTTCAAGGATaGCAGTATTCTGTCATGGTT +
Preference number: 4 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLVLQG*QYSVMV
Trigger: AACCATGACAGAATACTGCCATCCTTGAAGAACAAG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp CCGGCGCAAGTGCAGGCGGCCGCGCAGGGGGCCCGCGGGCCAGCCTaGGCGCCCGCTGACTCCGGCCATTGCAGTAGCAGCAAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: PAQVQAAAQGARGPA*APADSGHCSSSKSS
Trigger: GCTGCTCTTGCTGCTACTGCAATGGCCGGAGTCAGCGGGCGCCCAGGCTGGCCCGCGGGCCCCCTGCGCGGCCGCCTGCACTTGCGCCGG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCATGGGGGCAGCCACTaGAGCTGGCAGTCACACAGG +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPHGGSH*SWQSHR
Trigger: CCTGTGTGACTGCCAGCTCAAGTGGCTGCCCCCATG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp CAGCTGGTTGCCTGGAGTGAAATGGTGGCGCTCTGTGAGGCTCAATaGGCGACCTCCCTTAAGCCAGGTGATGCGTGGTGTGGGGCTCCC +
Preference number: 5 (lower is better)
Translates to: QLVAWSEMVALCEAQ*ATSLKPGDAWCGAP
Trigger: GGGAGCCCCACACCACGCATCACCTGGCTTAAGGGAGGTCGCCCATTGAGCCTCACAGAGCGCCACCATTTCACTCCAGGCAACCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp CCCTTCAGCGACTCTGGATGGGCACAGGTGGCTGTCACAAAGGCCTaGAGCATCCTACCCATTAGCCATGGGGGCAGCCACTTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: PFSDSGWAQVAVTKA*SILPISHGGSHLSW
Trigger: CCAGCTCAAGTGGCTGCCCCCATGGCTAATGGGTAGGATGCTGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCAAGACCCGCAGACTCTaGAGTCCCTTGAAGGCGCCT +
Preference number: 5 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGKTRRL*SPLKAP
Trigger: AGGCGCCTTCAAGGGACTCAAGAGTCTGCGGGTCTT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp GCGACCTCCCTTAAGCCAGGTGATGCGTGGTGTGGGGCTCCCGGTTaGTTTGCACTGGAAGGCCACTGTTTCTCCCACAGTTACCACACG +
Preference number: 5 (lower is better)
Translates to: ATSLKPGDAWCGAPG*FALEGHCFSHSYHT
Trigger: CGTGTGGTAACTGTGGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGGGAGCCCCACACCACGCATCACCTGGCTTAAGGGAGGTCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp CTCTGTGAGGCTCAATGGGCGACCTCCCTTAAGCCAGGTGATGCGTaGTGTGGGGCTCCCGGTTGCTTTGCACTGGAAGGCCACTGTTTC +
Preference number: 5 (lower is better)
Translates to: LCEAQWATSLKPGDA*CGAPGCFALEGHCF
Trigger: GAAACAGTGGCCTTCCAGTGCAAAGCAACCGGGAGCCCCACACCACGCATCACCTGGCTTAAGGGAGGTCGCCCATTGAGCCTCACAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCGTCAGCCTGGGTAGCTaGAACGCTTTCACAGGAAGC +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPVSLGS*NAFTGS
Trigger: GCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGAC...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 90 bp TCCCACTGTAAGGATGGTGTGGAGAATATTCCCGGTCATGCTGCCTaGGCTCTTGGCTGCTCGCTGTGCCTGGCTGCCCACTGTCTCTGG +
Preference number: 5 (lower is better)
Translates to: SHCKDGVENIPGHAA*ALGCSLCLAAHCLW
Trigger: CCAGAGACAGTGGGCAGCCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGGAATATTCTCCACACCATCCTTACAGTGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCATTCGAGAGATGGAGTaGTTGCTGAGGTGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPIREME*LLRCSW
Trigger: CCAGCTGCACCTCAGCAACAACTCCATCTCTCGAAT...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTACATGGGGGCAGCCACTaGAGCTGGCAGTCACACAGG +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVHGGSH*SWQSHR
Trigger: CCTGTGTGACTGCCAGCTCAAGTGGCTGCCCCCATG...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCGAGAGGAGAGGTAGCTaGGAACATCTGGAGGCACAA +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPERRGS*EHLEAQ
Trigger: TTGTGCCTCCAGATGTTCCAAGCTACCTCTCCTCTC...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCTATCCAACACACAGCTaGGGCTGCCTGCATGTAGTG +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPYPTHS*GCLHVV
Trigger: CACTACATGCAGGCAGCCCAAGCTGTGTGTTGGATA...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTATGCTGCCTGAGCTCTaGGCTGCTCGCTGTGCCTGG +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFMLPEL*AARCAW
Trigger: CCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCAT...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp CTGAGAAAATGCTCTGGCCCTTCAGCGACTCTGGATGGGCACAGGTaGCTGTCACAAAGGCCTGCAGCATCCTACCCATTAGCCATGGGG +
Preference number: 5 (lower is better)
Translates to: LRKCSGPSATLDGHR*LSQRPAASYPLAMG
Trigger: CCCCATGGCTAATGGGTAGGATGCTGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp CGCCGTCCTGTGCACGGACGTGGGCAAAGTTCTCCATGTCTGCATTaGCCAGGACCTCATTGTCCTTCTTCCAGGCGAAGGTCATTGGTG +
Preference number: 5 (lower is better)
Translates to: RRPVHGRGQSSPCLH*PGPHCPSSRRRSLV
Trigger: CACCAATGACCTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAATGCAGACATGGAGAACTTTGCCCACGTCCGTGCACAGGACGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTACTGGAGTCACAGGCCTaGGGGAGGTGGCCATTGGAA +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVLESQA*GRWPLE
Trigger: TTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCAG...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCTGGAGTCACAGGCCTaGGGGAGGTGGCCATTGGAA +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFLESQA*GRWPLE
Trigger: TTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCAG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp CACTTCGCCGTCCTGTGCACGGACGTGGGCAAAGTTCTCCATGTCTaGATTGGCCAGGACCTCATTGTCCTTCTTCCAGGCGAAGGTCAT +
Preference number: 5 (lower is better)
Translates to: HFAVLCTDVGKVLHV*IGQDLIVLLPGEGH
Trigger: ATGACCTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAATGCAGACATGGAGAACTTTGCCCACGTCCGTGCACAGGACGGCGAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp CTGGAGTCACAGGCCTTGGGGAGGTGGCCATTGGAAACAAGCAAGTaGTGGGCTTCAGTAGATATGGCGTCTTCCATGAGCTCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: LESQALGRWPLETSK*WASVDMASSMSSGL
Trigger: CAGCCCAGAGCTCATGGAAGACGCCATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp TCTGGCAGCACTGAGAAAATGCTCTGGCCCTTCAGCGACTCTGGATaGGCACAGGTGGCTGTCACAAAGGCCTGCAGCATCCTACCCATT +
Preference number: 5 (lower is better)
Translates to: SGSTEKMLWPFSDSG*AQVAVTKACSILPI
Trigger: AATGGGTAGGATGCTGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp AGAGAGGGTATGAGACCCATCCGCAGTCCCACTGTAAGGATGGTGTaGAGAATATTCCCGGTCATGCTGCCTGAGCTCTTGGCTGCTCGC +
Preference number: 5 (lower is better)
Translates to: REGMRPIRSPTVRMV*RIFPVMLPELLAAR
Trigger: GCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGGAATATTCTCCACACCATCCTTACAGTGGGACTGCGGATGGGTCTCATACCCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp GAGTCACAGGCCTTGGGGAGGTGGCCATTGGAAACAAGCAAGTGCTaGGCTTCAGTAGATATGGCGTCTTCCATGAGCTCTGGGCTGCCT +
Preference number: 5 (lower is better)
Translates to: ESQALGRWPLETSKC*ASVDMASSMSSGLP
Trigger: AGGCAGCCCAGAGCTCATGGAAGACGCCATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAAGGCCTGTGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTAAGACCCGCAGACTCTaGAGTCCCTTGAAGGCGCCT +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFKTRRL*SPLKAP
Trigger: AGGCGCCTTCAAGGGACTCAAGAGTCTGCGGGTCTT...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGTGCACCCTGCTCTACAGTGAGGCTGCCAACACCACGCCTGCATAGGTCTGGCATTTCCGTGATGTTGTaGGAACTCAGATCCAGCACT +
Preference number: 5 (lower is better)
Translates to: RAPCSTVRLPTPRLHRSGISVML*ELRSST
Trigger: AGTGCTGGATCTGAGTTCCAACAACATCACGGAAAT...GCCAGACCTATGCAGGCGTGGTGTTGGCAGCCTCACTGTAGAGCAGGGTGCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGTCAGCCTGGGTAGCTaGAACGCTTTCACAGGAAGC +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVVSLGS*NAFTGS
Trigger: GCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGAC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTACTTCCACCAGACTGTaGTACTCCAGGTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFTSTRL*YSRCST
Trigger: CGTGCTGCACCTGGAGTACAACAGTCTGGTGGAAGT...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCGCCACAGATTTGATCTaGTTTCCAAACAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPATDLI*FPNRVS
Trigger: GCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGC...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAACATGGGGGCAGCCACTaGAGCTGGCAGTCACACAGG +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKHGGSH*SWQSHR
Trigger: CCTGTGTGACTGCCAGCTCAAGTGGCTGCCCCCATG...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTATTGGCCAGGACCTCATaGTCCTTCTTCCAGGCGAAG +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVLARTS*SFFQAK
Trigger: CTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAA...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTATTGGGGAGGTGGCCATaGGAAACAAGCAAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVLGRWP*ETSKCW
Trigger: CCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAA...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 90 bp TCCTCTGAAGCCTCAGCACCTCTAAGCTGTCGAGCCCCTGGAACGTaGGGCCTTCAATCAGCCGAATCCGATTCCGATTCAGGTCTAGTT +
Preference number: 5 (lower is better)
Translates to: SSEASAPLSCRAPGT*GLQSAESDSDSGLV
Trigger: AACTAGACCTGAATCGGAATCGGATTCGGCTGATTGAAGGCCTCACGTTCCAGGGGCTCGACAGCTTAGAGGTGCTGAGGCTTCAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 90 bp CATTGCTTTCAATGTGCCCATTGGCCTGATGACCACCCTCAGTCCTaGCCACAGTTTCCTGCCGGTCAGAAAGGGTTCCCTGAGAGGAGA +
Preference number: 5 (lower is better)
Translates to: HCFQCAHWPDDHPQS*PQFPAGQKGFPERR
Trigger: TCTCCTCTCAGGGAACCCTTTCTGACCGGCAGGAAACTGTGGTCAGGACTGAGGGTGGTCATCAGGCCAATGGGCACATTGAAAGCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp CACTGTCTCTGGGCACAGGCTGGGGATGGTAGGCTGTGTCAGTACTaGAGTCACTACATACAGCAGAGCCACTGTGTGCTGTTGTATGTG +
Preference number: 5 (lower is better)
Translates to: HCLWAQAGDGRLCQY*SHYIQQSHCVLLYV
Trigger: CACATACAACAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCAGTACTGACACAGCCTACCATCCCCAGCCTGTGCCCAGAGACAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp GCACACTCGAGGCGGGCTGTGGTGCCAGTCCGGATGGCAATGTCATaGGGTATTTTAGTGAATGATGGCAACACATTCACAGTGAGCCTG +
Preference number: 5 (lower is better)
Translates to: AHSRRAVVPVRMAMS*GILVNDGNTFTVSL
Trigger: CAGGCTCACTGTGAATGTGTTGCCATCATTCACTAAAATACCCCATGACATTGCCATCCGGACTGGCACCACAGCCCGCCTCGAGTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTATGGGTGATCCTGTTTTaGCTCAGACGGAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVWVILF*LRRRVS
Trigger: GCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCA...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAATTCGAGAGATGGAGTaGTTGCTGAGGTGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVIREME*LLRCSW
Trigger: CCAGCTGCACCTCAGCAACAACTCCATCTCTCGAAT...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTTATCCAACACACAGCTaGGGCTGCCTGCATGTAGTG +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFYPTHS*GCLHVV
Trigger: CACTACATGCAGGCAGCCCAAGCTGTGTGTTGGATA...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 90 bp AGGAAGCTGGGTGATCCTGTTTTTGCTCAGACGGAGAGTCAGCAGTaGCCGCGACAGACCATCAAATGCTCCAGACTCCAGGATGCTGAT +
Preference number: 5 (lower is better)
Translates to: RKLGDPVFAQTESQQ*PRQTIKCSRLQDAD
Trigger: ATCAGCATCCTGGAGTCTGGAGCATTTGATGGTCTGTCGCGGTCACTGCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCAGCTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 90 bp CTGTGGCTTTGGAAAGTCATCACACACAAAGCTGTCTGGCAGCACTaGGAAAATGCTCTGGCCCTTCAGCGACTCTGGATGGGCACAGGT +
Preference number: 5 (lower is better)
Translates to: LWLWKVITHKAVWQH*ENALALQRLWMGTG
Trigger: ACCTGTGCCCATCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGCCAGACAGCTTTGTGTGTGATGACTTTCCAAAGCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp TCTAGTTGTGTCAGCCTGGGTAGCTTGAACGCTTTCACAGGAAGCTaGGTGATCCTGTTTTTGCTCAGACGGAGAGTCAGCAGTGACCGC +
Preference number: 5 (lower is better)
Translates to: SSCVSLGSLNAFTGS*VILFLLRRRVSSDR
Trigger: GCGGTCACTGCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGACACAACTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGTCAGCTCATTGCTGTaGAGGTACACTTCCTGCAGA +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVVSSLL*RYTSCR
Trigger: TCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGAC...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGACTTCCACCAGACTGTaGTACTCCAGGTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: AFHGLSYLFPVATALKELTSTRL*YSRCST
Trigger: CGTGCTGCACCTGGAGTACAACAGTCTGGTGGAAGT...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTAAGACCCGCAGACTCTaGAGTCCCTTGAAGGCGCCT +
Preference number: 5 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRAKTRRL*SPLKAP
Trigger: AGGCGCCTTCAAGGGACTCAAGAGTCTGCGGGTCTT...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGGTCAGCTTGCTGAGGTaGTCAAGCCCCGTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: AFHGLSYLFPVATALKELVSLLR*SSPVKA
Trigger: TGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGAC...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGGTCAGCTTGCTGAGGTaGTCAAGCCCCGTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQVSLLR*SSPVKA
Trigger: TGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGAC...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS-3UTR CAA 90 bp CTCACCGGTAAGGAACAGCGTGGACAGGCCTGCTCAGCAGAACTTAGCGGGCCCCTGCTTCATGTAACTTaGCTAAAGTCCAAGAGGAAT +
Preference number: 5 (lower is better)
Translates to: LTGKEQRGQACSAELSGPLLHVT*LKSKRN
Trigger: ATTCCTCTTGGACTTTAGCAAAGTTACATGAAGCAG...GGGCCCGCTAAGTTCTGCTGAGCAGGCCTGTCCACGCTGTTCCTTACCGGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ATTGGCACTCACAAGATGGCTAGCAACAGGGCCCCAAAGTGCAAATACACCCAGTTGGGGAGGTGGCCATaGGAAACAAGCAAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: IGTHKMASNRAPKCKYTQLGRWP*ETSKCW
Trigger: CCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAA...CTGGGTGTATTTGCACTTTGGGGCCCTGTTGCTAGCCATCTTGTGAGTGCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101126.3
CDS TCA 90 bp GACATCTCACAGGTATACCGCCCTGCATCGTCTATCATCACATTCTaGACAACCAGCAGCTGGTTGCCTGGAGTGAAATGGTGGCGCTCT +
Preference number: 5 (lower is better)
Translates to: DISQVYRPASSIITF*TTSSWLPGVKWWRS
Trigger: AGAGCGCCACCATTTCACTCCAGGCAACCAGCTGCTGGTTGTTCAGAATGTGATGATAGACGATGCAGGGCGGTATACCTGTGAGATGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp ACACAGCTTGGGCTGCCTGCATGTAGTGCTATGAATGTCGACCTCTaGGAAGAGGCTCGGGTCTCTCAGACACACACCATTGCTTTCAAT +
Preference number: 5 (lower is better)
Translates to: TQLGLPACSAMNVDL*EEARVSQTHTIAFN
Trigger: ATTGAAAGCAATGGTGTGTGTCTGAGAGACCCGAGCCTCTTCCCAGAGGTCGACATTCATAGCACTACATGCAGGCAGCCCAAGCTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCGAATTTCCGTGATGTaGTTGGAACTCAGATCCAGC +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFRISVM*LELRSS
Trigger: GCTGGATCTGAGTTCCAACAACATCACGGAAATTCG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp CGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTACGAATTTCCGTGATGTaGTTGGAACTCAGATCCAGC +
Preference number: 5 (lower is better)
Translates to: RSDVWTQAFHGLSYLFPVRISVM*LELRSS
Trigger: GCTGGATCTGAGTTCCAACAACATCACGGAAATTCG...TACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTTTGGGGAGGTGGCCATaGGAAACAAGCAAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRALGRWP*ETSKCW
Trigger: CCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAA...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp AGGTACGACTTCAGCTGGCTCCCATCCACACTAAGGATCTTGTTGTaGTGCAAAAAGAGAGAGACAACTCCTATGGAAGCAGCGCCCAGT +
Preference number: 5 (lower is better)
Translates to: RYDFSWLPSTLRILL*CKKRETTPMEAAPS
Trigger: ACTGGGCGCTGCTTCCATAGGAGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp ATTTTCACATCAGTGATGAAGAACACATCATCGTCTGGCATAACATaGATGCGTCGCTCACGAGCTGCCGGGAAATCGGTGCCTCCATCC +
Preference number: 5 (lower is better)
Translates to: IFTSVMKNTSSSGIT*MRRSRAAGKSVPPS
Trigger: GGATGGAGGCACCGATTTCCCGGCAGCTCGTGAGCGACGCATGCATGTTATGCCAGACGATGATGTGTTCTTCATCACTGATGTGAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGGTCAGCTCATTGCTGTaGAGGTACACTTCCTGCAGA +
Preference number: 5 (lower is better)
Translates to: AFHGLSYLFPVATALKELVSSLL*RYTSCR
Trigger: TCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGAC...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATGGGTGATCCTGTTTTaGCTCAGACGGAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: LENPQVPTLAASASLSFKWVILF*LRRRVS
Trigger: GCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAATTCGAGAGATGGAGTaGTTGCTGAGGTGCAGCTGG +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKIREME*LLRCSW
Trigger: CCAGCTGCACCTCAGCAACAACTCCATCTCTCGAAT...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATCCAGCCGCGTGAGGTaGTTGAAGGACAGAATCAAC +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKSSRVR*LKDRIN
Trigger: GTTGATTCTGTCCTTCAACAACCTCACGCGGCTGGA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTTCCAGCCGCGTGAGGTaGTTGAAGGACAGAATCAAC +
Preference number: 5 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRASSRVR*LKDRIN
Trigger: GTTGATTCTGTCCTTCAACAACCTCACGCGGCTGGA...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAATCCAGCCGCGTGAGGTaGTTGAAGGACAGAATCAAC +
Preference number: 5 (lower is better)
Translates to: LENPQVPTLAASASLSFKSSRVR*LKDRIN
Trigger: GTTGATTCTGTCCTTCAACAACCTCACGCGGCTGGA...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAATATCCAACACACAGCTaGGGCTGCCTGCATGTAGTG +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKYPTHS*GCLHVV
Trigger: CACTACATGCAGGCAGCCCAAGCTGTGTGTTGGATA...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp TACGACTTCAGCTGGCTCCCATCCACACTAAGGATCTTGTTGTGCTaGAAAAAGAGAGAGACAACTCCTATGGAAGCAGCGCCCAGTGAT +
Preference number: 5 (lower is better)
Translates to: YDFSWLPSTLRILLC*KKRETTPMEAAPSD
Trigger: ATCACTGGGCGCTGCTTCCATAGGAGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAGTCAGCTCATTGCTGTaGAGGTACACTTCCTGCAGA +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKVSSLL*RYTSCR
Trigger: TCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGAC...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGCTCAGACACACACCATaGCTTTCAATGTGCCCATTG +
Preference number: 5 (lower is better)
Translates to: AFHGLSYLFPVATALKELLRHTP*LSMCPL
Trigger: CAATGGGCACATTGAAAGCAATGGTGTGTGTCTGAG...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 90 bp TGTGGTGCCAGTCCGGATGGCAATGTCATGGGGTATTTTAGTGAATaGTGGCAACACATTCACAGTGAGCCTGGCTTTGTGGGAGTATGT +
Preference number: 5 (lower is better)
Translates to: CGASPDGNVMGYFSE*WQHIHSEPGFVGVC
Trigger: ACATACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGCCATCATTCACTAAAATACCCCATGACATTGCCATCCGGACTGGCACCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp AAGGTTCTTCATCTTTGCAAAGGCATCAAACTGGACAGACCTGATTaGATTCTCTCCAAGGTTCAGGTGTTCCAGGCTTTCCAGGCCCGA +
Preference number: 5 (lower is better)
Translates to: KVLHLCKGIKLDRPD*ILSKVQVFQAFQAR
Trigger: TCGGGCCTGGAAAGCCTGGAACACCTGAACCTTGGAGAGAATGCAATCAGGTCTGTCCAGTTTGATGCCTTTGCAAAGATGAAGAACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 90 bp TTGGAACTCAGATCCAGCACTTCCAAGGACAGGTACGACTTCAGCTaGCTCCCATCCACACTAAGGATCTTGTTGTGCTGCAAAAAGAGA +
Preference number: 5 (lower is better)
Translates to: LELRSSTSKDRYDFS*LPSTLRILLCCKKR
Trigger: TCTCTTTTTGCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTACCTGTCCTTGGAAGTGCTGGATCTGAGTTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCATTGGCCAGGACCTCATaGTCCTTCTTCCAGGCGAAG +
Preference number: 5 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPLARTS*SFFQAK
Trigger: CTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAA...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp ACTGTCCGGAGTGACGTCTGGACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCTGCTTCATGTAACTTaGCTAAAGTCCAAGAGGAAT +
Preference number: 5 (lower is better)
Translates to: TVRSDVWTQAFHGLSYLFLLHVT*LKSKRN
Trigger: ATTCCTCTTGGACTTTAGCAAAGTTACATGAAGCAG...AAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTCCAGACGTCACTCCGGACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTGACACTAAGGATCTTGTaGTGCTGCAAAAAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: AFHGLSYLFPVATALKELTLRIL*CCKKRE
Trigger: CTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGT...CAGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAATTTCCGTGATGTTGTaGGAACTCAGATCCAGCACT +
Preference number: 5 (lower is better)
Translates to: LENPQVPTLAASASLSFKISVML*ELRSST
Trigger: AGTGCTGGATCTGAGTTCCAACAACATCACGGAAAT...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTGGAAAATCCACAGGTACCAACACTGGCAGCCTCCGCCTCACTAAGCTTCAAAGCCACAGATTTGATCTaGTTTCCAAACAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: LENPQVPTLAASASLSFKATDLI*FPNRVS
Trigger: GCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGC...TTTGAAGCTTAGTGAGGCGGAGGCTGCCAGTGTTGGTACCTGTGGATTTTCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAGAGAGGAGAGGTAGCTaGGAACATCTGGAGGCACAA +
Preference number: 5 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPERRGS*EHLEAQ
Trigger: TTGTGCCTCCAGATGTTCCAAGCTACCTCTCCTCTC...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAACACTAAGGATCTTGTaGTGCTGCAAAAAGAGAGAG +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKTLRIL*CCKKRE
Trigger: CTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGT...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACATGCTGCCTGAGCTCTaGGCTGCTCGCTGTGCCTGG +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDMLPEL*AARCAW
Trigger: CCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCAT...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCATGCTGCCTGAGCTCTaGGCTGCTCGCTGTGCCTGG +
Preference number: 5 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFMLPEL*AARCAW
Trigger: CCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCAT...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp GACACAAGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAACTCTTAGCCACAGATTaGATCTTGTTTCCAAACAGA +
Preference number: 5 (lower is better)
Translates to: DTSFPRPLLPLSCSDCFKLLATD*ILFPNR
Trigger: TCTGTTTGGAAACAAGATCAAATCTGTGGCTAAGAG...TTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCTTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTCTCTTAGCCACAGATTaGATCTTGTTTCCAAACAGA +
Preference number: 5 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRALLATD*ILFPNR
Trigger: TCTGTTTGGAAACAAGATCAAATCTGTGGCTAAGAG...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCTTTCCACGGCCTCTCCTACCTCTTTCCTGTAGCGACTGCTTTAAAAGAGCTCTGCTTCATGTAACTTaGCTAAAGTCCAAGAGGAAT +
Preference number: 5 (lower is better)
Translates to: SFPRPLLPLSCSDCFKRALLHVT*LKSKRN
Trigger: ATTCCTCTTGGACTTTAGCAAAGTTACATGAAGCAG...AGCTCTTTTAAAGCAGTCGCTACAGGAAAGAGGTAGGAGAGGCCGTGGAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCTGGAGTCACAGGCCTaGGGGAGGTGGCCATTGGAA +
Preference number: 5 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLESQA*GRWPLE
Trigger: TTCCAATGGCCACCTCCCCAAGGCCTGTGACTCCAG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 90 bp GAAGCTCTCACTGCTGATGTAGAGCTCTTTAAGGTTCTTCATCTTTaGAAAGGCATCAAACTGGACAGACCTGATTGCATTCTCTCCAAG +
Preference number: 5 (lower is better)
Translates to: EALTADVELFKVLHL*KGIKLDRPDCILSK
Trigger: CTTGGAGAGAATGCAATCAGGTCTGTCCAGTTTGATGCCTTTGCAAAGATGAAGAACCTTAAAGAGCTCTACATCAGCAGTGAGAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TTTCCTGCCTTTTGTACACAAATAGTCTCTCACGTTTCTGAGCTCCAGATGCCAATTTCCGTGATGTTGTaGGAACTCAGATCCAGCACT +
Preference number: 5 (lower is better)
Translates to: FPAFCTQIVSHVSELQMPISVML*ELRSST
Trigger: AGTGCTGGATCTGAGTTCCAACAACATCACGGAAAT...TGGCATCTGGAGCTCAGAAACGTGAGAGACTATTTGTGTACAAAAGGCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGTCAGCCTGGGTAGCTaGAACGCTTTCACAGGAAGC +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDVSLGS*NAFTGS
Trigger: GCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGAC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCACTTCCACCAGACTGTaGTACTCCAGGTGCAGCACG +
Preference number: 5 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFTSTRL*YSRCST
Trigger: CGTGCTGCACCTGGAGTACAACAGTCTGGTGGAAGT...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCGTCAGCTTGCTGAGGTaGTCAAGCCCCGTAAAGGCA +
Preference number: 5 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFVSLLR*SSPVKA
Trigger: TGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGAC...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACTTGGCCAGGACCTCATaGTCCTTCTTCCAGGCGAAG +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLARTS*SFFQAK
Trigger: CTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAA...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACTGGGTGATCCTGTTTTaGCTCAGACGGAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDWVILF*LRRRVS
Trigger: GCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCA...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGAGAGGAGAGGTAGCTaGGAACATCTGGAGGCACAA +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDERRGS*EHLEAQ
Trigger: TTGTGCCTCCAGATGTTCCAAGCTACCTCTCCTCTC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCGAATTTCCGTGATGTaGTTGGAACTCAGATCCAGC +
Preference number: 5 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFRISVM*LELRSS
Trigger: GCTGGATCTGAGTTCCAACAACATCACGGAAATTCG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp TACATAAAAAGTAATACTTCCTCTTTCACATTGCCTCTCAGAAGCAGCAAATTCCTCAGACACACACCATaGCTTTCAATGTGCCCATTG +
Preference number: 5 (lower is better)
Translates to: YIKSNTSSFTLPLRSSKFLRHTP*LSMCPL
Trigger: CAATGGGCACATTGAAAGCAATGGTGTGTGTCTGAG...GAATTTGCTGCTTCTGAGAGGCAATGTGAAAGAGGAAGTATTACTTTTTATGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCTCAGACACACACCATaGCTTTCAATGTGCCCATTG +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLRHTP*LSMCPL
Trigger: CAATGGGCACATTGAAAGCAATGGTGTGTGTCTGAG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACGCCACAGATTTGATCTaGTTTCCAAACAGAGTCAGC +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDATDLI*FPNRVS
Trigger: GCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGC...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS-3UTR CAA 90 bp AGCAGCAAATTCACATATTTTGTGGAAGTAACATTAACCATCAACTATGGAGACCTCTTAGCCACAGATTaGATCTTGTTTCCAAACAGA +
Preference number: 5 (lower is better)
Translates to: SSKFTYFVEVTLTINYGDLLATD*ILFPNR
Trigger: TCTGTTTGGAAACAAGATCAAATCTGTGGCTAAGAG...GTCTCCATAGTTGATGGTTAATGTTACTTCCACAAAATATGTGAATTTGCTGCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp CGCGGGCCAGCCTGGGCGCCCGCTGACTCCGGCCATTaGAGTAGCAGCAAGAGCAGCCAGAGCAGAAGGCGA +
Preference number: 6 (lower is better)
Translates to: RGPAWAPADSGH*SSSKSSQSRRR
Trigger: TCGCCTTCTGCTCTGGCTGCTCTTGCTGCTACTGCAATGGCCGGAGTCAGCGGGCGCCCAGGCTGGCCCGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp GCTCAATGGGCGACCTCCCTTAAGCCAGGTGATGCGTaGTGTGGGGCTCCCGGTTGCTTTGCACTGGAAGGC +
Preference number: 6 (lower is better)
Translates to: AQWATSLKPGDA*CGAPGCFALEG
Trigger: GCCTTCCAGTGCAAAGCAACCGGGAGCCCCACACCACGCATCACCTGGCTTAAGGGAGGTCGCCCATTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp CTGCTGCTGGCTGCGGAGCATGTGAAACGGATGTCCTaGCCCACCACAGCCATGGTCGTCTCAGGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: LLLAAEHVKRMS*PTTAMVVSGWV
Trigger: CACCCAGCCTGAGACGACCATGGCTGTGGTGGGCAAGGACATCCGTTTCACATGCTCCGCAGCCAGCAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp GACTCTGGATGGGCACAGGTGGCTGTCACAAAGGCCTaGAGCATCCTACCCATTAGCCATGGGGGCAGCCAC +
Preference number: 6 (lower is better)
Translates to: DSGWAQVAVTKA*SILPISHGGSH
Trigger: GTGGCTGCCCCCATGGCTAATGGGTAGGATGCTGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAGAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp GGTGAGCTGCTGCTGCTGGCTGCGGAGCATGTGAAACGGATGTCCTaGCCCACCACAGCCATGGTCGTCTCAGGCTGGGTGATGATCTGT +
Preference number: 6 (lower is better)
Translates to: GELLLLAAEHVKRMS*PTTAMVVSGWVMIC
Trigger: ACAGATCATCACCCAGCCTGAGACGACCATGGCTGTGGTGGGCAAGGACATCCGTTTCACATGCTCCGCAGCCAGCAGCAGCAGCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp GCCTGGAGTGAAATGGTGGCGCTCTGTGAGGCTCAATaGGCGACCTCCCTTAAGCCAGGTGATGCGTGGTGT +
Preference number: 6 (lower is better)
Translates to: AWSEMVALCEAQ*ATSLKPGDAWC
Trigger: ACACCACGCATCACCTGGCTTAAGGGAGGTCGCCCATTGAGCCTCACAGAGCGCCACCATTTCACTCCAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp TGTGGAGAATATTCCCGGTCATGCTGCCTGAGCTCTTaGCTGCTCGCTGTGCCTGGCTGCCCACTGTCTCTG +
Preference number: 6 (lower is better)
Translates to: CGEYSRSCCLSS*LLAVPGCPLSL
Trigger: CAGAGACAGTGGGCAGCCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGGAATATTCTCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp AGCCAGGTGATGCGTGGTGTGGGGCTCCCGGTTGCTTaGCACTGGAAGGCCACTGTTTCTCCCACAGTTACC +
Preference number: 6 (lower is better)
Translates to: SQVMRGVGLPVA*HWKATVSPTVT
Trigger: GGTAACTGTGGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGGGAGCCCCACACCACGCATCACCTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GTGTGGAGAATATTCCCGGTCATGCTGCCTGAGCTCTaGGCTGCTCGCTGTGCCTGGCTGCCCACTGTCTCT +
Preference number: 6 (lower is better)
Translates to: VWRIFPVMLPEL*AARCAWLPTVS
Trigger: AGAGACAGTGGGCAGCCAGGCACAGCGAGCAGCCAAGAGCTCAGGCAGCATGACCGGGAATATTCTCCACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp CCTCCCTTAAGCCAGGTGATGCGTGGTGTGGGGCTCCCGGTTGCTTaGCACTGGAAGGCCACTGTTTCTCCCACAGTTACCACACGGTCT +
Preference number: 6 (lower is better)
Translates to: PPLSQVMRGVGLPVA*HWKATVSPTVTTRS
Trigger: AGACCGTGTGGTAACTGTGGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGGGAGCCCCACACCACGCATCACCTGGCTTAAGGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp GCGAGGTCAGGACAATACTGCACACCACAGCAATGGTaGAGATGCCTACGGTGGTCCCATCCTTCCGGCAGC +
Preference number: 6 (lower is better)
Translates to: ARSGQYCTPQQW*RCLRWSHPSGS
Trigger: GCTGCCGGAAGGATGGGACCACCGTAGGCATCTTCACCATTGCTGTGGTGTGCAGTATTGTCCTGACCTCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp CTTAAGCCAGGTGATGCGTGGTGTGGGGCTCCCGGTTaGTTTGCACTGGAAGGCCACTGTTTCTCCCACAGT +
Preference number: 6 (lower is better)
Translates to: LKPGDAWCGAPG*FALEGHCFSHS
Trigger: ACTGTGGGAGAAACAGTGGCCTTCCAGTGCAAAGCAACCGGGAGCCCCACACCACGCATCACCTGGCTTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp TGCTCTGGCCCTTCAGCGACTCTGGATGGGCACAGGTaGCTGTCACAAAGGCCTGCAGCATCCTACCCATTA +
Preference number: 6 (lower is better)
Translates to: CSGPSATLDGHR*LSQRPAASYPL
Trigger: TAATGGGTAGGATGCTGCAGGCCTTTGTGACAGCCACCTGTGCCCATCCAGAGTCGCTGAAGGGCCAGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TGCAGCATCCTACCCATTAGCCATGGGGGCAGCCACTaGAGCTGGCAGTCACACAGGAAGCTCTCACTGCTG +
Preference number: 6 (lower is better)
Translates to: CSILPISHGGSH*SWQSHRKLSLL
Trigger: CAGCAGTGAGAGCTTCCTGTGTGACTGCCAGCTCAAGTGGCTGCCCCCATGGCTAATGGGTAGGATGCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp TCGCCGTCCTGTGCACGGACGTGGGCAAAGTTCTCCATGTCTGCATaGGCCAGGACCTCATTGTCCTTCTTCCAGGCGAAGGTCATTGGT +
Preference number: 6 (lower is better)
Translates to: SPSCARTWAKFSMSA*ARTSLSFFQAKVIG
Trigger: ACCAATGACCTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAATGCAGACATGGAGAACTTTGCCCACGTCCGTGCACAGGACGGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp GCCTCAGCACCTCTAAGCTGTCGAGCCCCTGGAACGTaGGGCCTTCAATCAGCCGAATCCGATTCCGATTCA +
Preference number: 6 (lower is better)
Translates to: ASAPLSCRAPGT*GLQSAESDSDS
Trigger: TGAATCGGAATCGGATTCGGCTGATTGAAGGCCTCACGTTCCAGGGGCTCGACAGCTTAGAGGTGCTGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp CCAACACACAGCTTGGGCTGCCTGCATGTAGTGCTATaGATGTCGACCTCTGGGAAGAGGCTCGGGTCTCTC +
Preference number: 6 (lower is better)
Translates to: PTHSLGCLHVVL*MSTSGKRLGSL
Trigger: GAGAGACCCGAGCCTCTTCCCAGAGGTCGACATTCATAGCACTACATGCAGGCAGCCCAAGCTGTGTGTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp GTCCTGTGCACGGACGTGGGCAAAGTTCTCCATGTCTaGATTGGCCAGGACCTCATTGTCCTTCTTCCAGGC +
Preference number: 6 (lower is better)
Translates to: VLCTDVGKVLHV*IGQDLIVLLPG
Trigger: GCCTGGAAGAAGGACAATGAGGTCCTGGCCAATGCAGACATGGAGAACTTTGCCCACGTCCGTGCACAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp TGGGCACAGGCTGGGGATGGTAGGCTGTGTCAGTACTaGAGTCACTACATACAGCAGAGCCACTGTGTGCTG +
Preference number: 6 (lower is better)
Translates to: WAQAGDGRLCQY*SHYIQQSHCVL
Trigger: CAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCAGTACTGACACAGCCTACCATCCCCAGCCTGTGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp GCCAATAGCAGTGGTCCCCTCCGTTTCCCAGTGATCTaGCCTTTCAGTGGCACAGATTCAGGGCTGGAGTCA +
Preference number: 6 (lower is better)
Translates to: ANSSGPLRFPVI*PFSGTDSGLES
Trigger: TGACTCCAGCCCTGAATCTGTGCCACTGAAAGGGCAGATCACTGGGAAACGGAGGGGACCACTGCTATTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp TCAAATGCTCCAGACTCCAGGATGCTGATGCGGTTGCTCGCCAAGTaGAGTTCCCTTATACGCAGGCCGTTCGGGAAACAGGAGCTCCGA +
Preference number: 6 (lower is better)
Translates to: SNAPDSRMLMRLLAK*SSLIRRPFGKQELR
Trigger: TCGGAGCTCCTGTTTCCCGAACGGCCTGCGTATAAGGGAACTCAACTTGGCGAGCAACCGCATCAGCATCCTGGAGTCTGGAGCATTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp CGCGACAGACCATCAAATGCTCCAGACTCCAGGATGCTGATGCGGTaGCTCGCCAAGTTGAGTTCCCTTATACGCAGGCCGTTCGGGAAA +
Preference number: 6 (lower is better)
Translates to: RDRPSNAPDSRMLMR*LAKLSSLIRRPFGK
Trigger: TTTCCCGAACGGCCTGCGTATAAGGGAACTCAACTTGGCGAGCAACCGCATCAGCATCCTGGAGTCTGGAGCATTTGATGGTCTGTCGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp CGCTGTACTCCTCGCTCTTCTTCCTGGTCTGGTAGATaGTGCACACCCACACCAGCGAGGTCAGGACAATAC +
Preference number: 6 (lower is better)
Translates to: RCTPRSSSWSGR*CTPTPARSGQY
Trigger: GTATTGTCCTGACCTCGCTGGTGTGGGTGTGCATCATCTACCAGACCAGGAAGAAGAGCGAGGAGTACAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp CTGGGAAGAGGCTCGGGTCTCTCAGACACACACCATTaGTTTCAATGTGCCCATTGGCCTGATGACCACCCT +
Preference number: 6 (lower is better)
Translates to: LGRGSGLSDTHH*FQCAHWPDDHP
Trigger: AGGGTGGTCATCAGGCCAATGGGCACATTGAAAGCAATGGTGTGTGTCTGAGAGACCCGAGCCTCTTCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp CAGGCCTTGGGGAGGTGGCCATTGGAAACAAGCAAGTaGTGGGCTTCAGTAGATATGGCGTCTTCCATGAGC +
Preference number: 6 (lower is better)
Translates to: QALGRWPLETSK*WASVDMASSMS
Trigger: GCTCATGGAAGACGCCATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAAGGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp GGGCTGCCTGCATGTAGTGCTATGAATGTCGACCTCTaGGAAGAGGCTCGGGTCTCTCAGACACACACCATT +
Preference number: 6 (lower is better)
Translates to: GLPACSAMNVDL*EEARVSQTHTI
Trigger: AATGGTGTGTGTCTGAGAGACCCGAGCCTCTTCCCAGAGGTCGACATTCATAGCACTACATGCAGGCAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TGCAGTCACTACATACAGCAGAGCCACTGTGTGCTGTaGTATGTGGGGCAGCTGTCCTGTCGGCTTTCTCCG +
Preference number: 6 (lower is better)
Translates to: CSHYIQQSHCVL*YVGQLSCRLSP
Trigger: CGGAGAAAGCCGACAGGACAGCTGCCCCACATACAACAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp CGCAGGCCGTTCGGGAAACAGGAGCTCCGAATTTCCGTGATGTTGTaGGAACTCAGATCCAGCACTTCCAAGGACAGGTACGACTTCAGC +
Preference number: 6 (lower is better)
Translates to: RRPFGKQELRISVML*ELRSSTSKDRYDFS
Trigger: GCTGAAGTCGTACCTGTCCTTGGAAGTGCTGGATCTGAGTTCCAACAACATCACGGAAATTCGGAGCTCCTGTTTCCCGAACGGCCTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp GGTGATCCTGTTTTTGCTCAGACGGAGAGTCAGCAGTaGCCGCGACAGACCATCAAATGCTCCAGACTCCAG +
Preference number: 6 (lower is better)
Translates to: GDPVFAQTESQQ*PRQTIKCSRLQ
Trigger: CTGGAGTCTGGAGCATTTGATGGTCTGTCGCGGTCACTGCTGACTCTCCGTCTGAGCAAAAACAGGATCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp GTCAGCCTGGGTAGCTTGAACGCTTTCACAGGAAGCTaGGTGATCCTGTTTTTGCTCAGACGGAGAGTCAGC +
Preference number: 6 (lower is better)
Translates to: VSLGSLNAFTGS*VILFLLRRRVS
Trigger: GCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp ACTACATACAGCAGAGCCACTGTGTGCTGTTGTATGTaGGGCAGCTGTCCTGTCGGCTTTCTCCGTCACCTT +
Preference number: 6 (lower is better)
Translates to: TTYSRATVCCCM*GSCPVGFLRHL
Trigger: AAGGTGACGGAGAAAGCCGACAGGACAGCTGCCCCACATACAACAGCACACAGTGGCTCTGCTGTATGTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp GCCTTGGGGAGGTGGCCATTGGAAACAAGCAAGTGCTaGGCTTCAGTAGATATGGCGTCTTCCATGAGCTCT +
Preference number: 6 (lower is better)
Translates to: ALGRWPLETSKC*ASVDMASSMSS
Trigger: AGAGCTCATGGAAGACGCCATATCTACTGAAGCCCAGCACTTGCTTGTTTCCAATGGCCACCTCCCCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp CTGCTCAACTCCGCTAGACTCTCCTCATCCAGCCGCGTGAGGTTGTaGAAGGACAGAATCAACTCATGCAGCTTTTGGCAGAAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: LLNSARLSSSSRVRL*KDRINSCSFWQKLQ
Trigger: CTGGAGCTTCTGCCAAAAGCTGCATGAGTTGATTCTGTCCTTCAACAACCTCACGCGGCTGGATGAGGAGAGTCTAGCGGAGTTGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp TCAGTGATGAAGAACACATCATCGTCTGGCATAACATaGATGCGTCGCTCACGAGCTGCCGGGAAATCGGTG +
Preference number: 6 (lower is better)
Translates to: SVMKNTSSSGIT*MRRSRAAGKSV
Trigger: CACCGATTTCCCGGCAGCTCGTGAGCGACGCATGCATGTTATGCCAGACGATGATGTGTTCTTCATCACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp AGATCCAGCACTTCCAAGGACAGGTACGACTTCAGCTaGCTCCCATCCACACTAAGGATCTTGTTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: RSSTSKDRYDFS*LPSTLRILLCC
Trigger: GCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTACCTGTCCTTGGAAGTGCTGGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp CACAGCCATGGTCGTCTCAGGCTGGGTGATGATCTGTaGCTTTGGAAAGTCATCACACACAAAGCTGTCTGG +
Preference number: 6 (lower is better)
Translates to: HSHGRLRLGDDL*LWKVITHKAVW
Trigger: CCAGACAGCTTTGTGTGTGATGACTTTCCAAAGCCACAGATCATCACCCAGCCTGAGACGACCATGGCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GCGCCCAGTGATGGTATGGCTGTCAGCTCATTGCTGTaGAGGTACACTTCCTGCAGATTCGTCAAGTCCTCA +
Preference number: 6 (lower is better)
Translates to: APSDGMAVSSLL*RYTSCRFVKSS
Trigger: TGAGGACTTGACGAATCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGACAGCCATACCATCACTGGGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GAAGCAGCGCCCAGTGATGGTATGGCTGTCAGCTCATaGCTGTTGAGGTACACTTCCTGCAGATTCGTCAAG +
Preference number: 6 (lower is better)
Translates to: EAAPSDGMAVSS*LLRYTSCRFVK
Trigger: CTTGACGAATCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGACAGCCATACCATCACTGGGCGCTGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TTGAACGCTTTCACAGGAAGCTGGGTGATCCTGTTTTaGCTCAGACGGAGAGTCAGCAGTGACCGCGACAGA +
Preference number: 6 (lower is better)
Translates to: LNAFTGSWVILF*LRRRVSSDRDR
Trigger: TCTGTCGCGGTCACTGCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGCGTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GCAAAGTTCTCCATGTCTGCATTGGCCAGGACCTCATaGTCCTTCTTCCAGGCGAAGGTCATTGGTGAGCTG +
Preference number: 6 (lower is better)
Translates to: AKFSMSALARTS*SFFQAKVIGEL
Trigger: CAGCTCACCAATGACCTTCGCCTGGAAGAAGGACAATGAGGTCCTGGCCAATGCAGACATGGAGAACTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp ATACGCAGGCCGTTCGGGAAACAGGAGCTCCGAATTTCCGTGATGTaGTTGGAACTCAGATCCAGCACTTCCAAGGACAGGTACGACTTC +
Preference number: 6 (lower is better)
Translates to: IRRPFGKQELRISVM*LELRSSTSKDRYDF
Trigger: GAAGTCGTACCTGTCCTTGGAAGTGCTGGATCTGAGTTCCAACAACATCACGGAAATTCGGAGCTCCTGTTTCCCGAACGGCCTGCGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp CTGGGTAGCTTGAACGCTTTCACAGGAAGCTGGGTGATCCTGTTTTaGCTCAGACGGAGAGTCAGCAGTGACCGCGACAGACCATCAAAT +
Preference number: 6 (lower is better)
Translates to: LGSLNAFTGSWVILF*LRRRVSSDRDRPSN
Trigger: ATTTGATGGTCTGTCGCGGTCACTGCTGACTCTCCGTCTGAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGCGTTCAAGCTACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp AGGCTTTCCAGGCCCGAGAAGGCTCTCTTAGCCACAGATTTGATCTaGTTTCCAAACAGAGTCAGCTTGCTGAGGTTGTCAAGCCCCGTA +
Preference number: 6 (lower is better)
Translates to: RLSRPEKALLATDLI*FPNRVSLLRLSSPV
Trigger: TACGGGGCTTGACAACCTCAGCAAGCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGCTAAGAGAGCCTTCTCGGGCCTGGAAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp CGCCCAGTGATGGTATGGCTGTCAGCTCATTGCTGTTaGGGTACACTTCCTGCAGATTCGTCAAGTCCTCAA +
Preference number: 6 (lower is better)
Translates to: RPVMVWLSAHCC*GTLPADSSSPQ
Trigger: TTGAGGACTTGACGAATCTGCAGGAAGTGTACCTCAACAGCAATGAGCTGACAGCCATACCATCACTGGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp TGGAAAGTCATCACACACAAAGCTGTCTGGCAGCACTaGGAAAATGCTCTGGCCCTTCAGCGACTCTGGATG +
Preference number: 6 (lower is better)
Translates to: WKVITHKAVWQH*ENALALQRLWM
Trigger: CATCCAGAGTCGCTGAAGGGCCAGAGCATTTTCTCAGTGCTGCCAGACAGCTTTGTGTGTGATGACTTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp CAGGTATACCGCCCTGCATCGTCTATCATCACATTCTaGACAACCAGCAGCTGGTTGCCTGGAGTGAAATGG +
Preference number: 6 (lower is better)
Translates to: QVYRPASSIITF*TTSSWLPGVKW
Trigger: CCATTTCACTCCAGGCAACCAGCTGCTGGTTGTTCAGAATGTGATGATAGACGATGCAGGGCGGTATACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp GCCCAGGGGATTAGACATCTCACAGGTATACCGCCCTaGATCGTCTATCATCACATTCTGAACAACCAGCAG +
Preference number: 6 (lower is better)
Translates to: AQGIRHLTGIPP*IVYHHILNNQQ
Trigger: CTGCTGGTTGTTCAGAATGTGATGATAGACGATGCAGGGCGGTATACCTGTGAGATGTCTAATCCCCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp AGGCGGGCTGTGGTGCCAGTCCGGATGGCAATGTCATaGGGTATTTTAGTGAATGATGGCAACACATTCACA +
Preference number: 6 (lower is better)
Translates to: RRAVVPVRMAMS*GILVNDGNTFT
Trigger: TGTGAATGTGTTGCCATCATTCACTAAAATACCCCATGACATTGCCATCCGGACTGGCACCACAGCCCGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp GTTCCCATCTGCAGACGCCGCCTTGTTCTTCAAGGATaGCAGTATTCTGTCATGGTTGCTTGGATAGAGGGA +
Preference number: 6 (lower is better)
Translates to: VPICRRRLVLQG*QYSVMVAWIEG
Trigger: TCCCTCTATCCAAGCAACCATGACAGAATACTGCCATCCTTGAAGAACAAGGCGGCGTCTGCAGATGGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp AACTCCGCTAGACTCTCCTCATCCAGCCGCGTGAGGTaGTTGAAGGACAGAATCAACTCATGCAGCTTTTGG +
Preference number: 6 (lower is better)
Translates to: NSARLSSSSRVR*LKDRINSCSFW
Trigger: CCAAAAGCTGCATGAGTTGATTCTGTCCTTCAACAACCTCACGCGGCTGGATGAGGAGAGTCTAGCGGAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp CAAGAGGAATCTCCGTTCCCATCTGCAGACGCCGCCTaGTTCTTCAAGGATGGCAGTATTCTGTCATGGTTG +
Preference number: 6 (lower is better)
Translates to: QEESPFPSADAA*FFKDGSILSWL
Trigger: CAACCATGACAGAATACTGCCATCCTTGAAGAACAAGGCGGCGTCTGCAGATGGGAACGGAGATTCCTCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp CGAATCCGATTCCGATTCAGGTCTAGTTGTGTCAGCCTGGGTAGCTaGAACGCTTTCACAGGAAGCTGGGTGATCCTGTTTTTGCTCAGA +
Preference number: 6 (lower is better)
Translates to: RIRFRFRSSCVSLGS*NAFTGSWVILFLLR
Trigger: TCTGAGCAAAAACAGGATCACCCAGCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGACACAACTAGACCTGAATCGGAATCGGATTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp GCTCTCTTAGCCACAGATTTGATCTTGTTTCCAAACAGAGTCAGCTaGCTGAGGTTGTCAAGCCCCGTAAAGGCACCACTGGTATCCTCG +
Preference number: 6 (lower is better)
Translates to: ALLATDLILFPNRVS*LRLSSPVKAPLVSS
Trigger: CGAGGATACCAGTGGTGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGCTAAGAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp TGTTCCAGGCTTTCCAGGCCCGAGAAGGCTCTCTTAGCCACAGATTaGATCTTGTTTCCAAACAGAGTCAGCTTGCTGAGGTTGTCAAGC +
Preference number: 6 (lower is better)
Translates to: CSRLSRPEKALLATD*ILFPNRVSLLRLSS
Trigger: GCTTGACAACCTCAGCAAGCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGCTAAGAGAGCCTTCTCGGGCCTGGAAAGCCTGGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp AAAGAGAGAGACAACTCCTATGGAAGCAGCGCCCAGTaGTGGTATGGCTGTCAGCTCATTGCTGTTGAGGTA +
Preference number: 6 (lower is better)
Translates to: KERDNSYGSSAQ*WYGCQLIAVEV
Trigger: TACCTCAACAGCAATGAGCTGACAGCCATACCATCACTGGGCGCTGCTTCCATAGGAGTTGTCTCTCTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TTCGGGAAACAGGAGCTCCGAATTTCCGTGATGTTGTaGGAACTCAGATCCAGCACTTCCAAGGACAGGTAC +
Preference number: 6 (lower is better)
Translates to: FGKQELRISVML*ELRSSTSKDRY
Trigger: GTACCTGTCCTTGGAAGTGCTGGATCTGAGTTCCAACAACATCACGGAAATTCGGAGCTCCTGTTTCCCGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TTCCGATTCAGGTCTAGTTGTGTCAGCCTGGGTAGCTaGAACGCTTTCACAGGAAGCTGGGTGATCCTGTTT +
Preference number: 6 (lower is better)
Translates to: FRFRSSCVSLGS*NAFTGSWVILF
Trigger: AAACAGGATCACCCAGCTTCCTGTGAAAGCGTTCAAGCTACCCAGGCTGACACAACTAGACCTGAATCGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TTGATCTTGTTTCCAAACAGAGTCAGCTTGCTGAGGTaGTCAAGCCCCGTAAAGGCACCACTGGTATCCTCG +
Preference number: 6 (lower is better)
Translates to: LILFPNRVSLLR*SSPVKAPLVSS
Trigger: CGAGGATACCAGTGGTGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGACTCTGTTTGGAAACAAGATCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GCCACAGATTTGATCTTGTTTCCAAACAGAGTCAGCTaGCTGAGGTTGTCAAGCCCCGTAAAGGCACCACTG +
Preference number: 6 (lower is better)
Translates to: ATDLILFPNRVS*LRLSSPVKAPL
Trigger: CAGTGGTGCCTTTACGGGGCTTGACAACCTCAGCAAGCTGACTCTGTTTGGAAACAAGATCAAATCTGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GAGGTTGTTGAAGGACAGAATCAACTCATGCAGCTTTaGGCAGAAGCTCCAGCCATCACGCTGAATTCGAGA +
Preference number: 6 (lower is better)
Translates to: EVVEGQNQLMQL*AEAPAITLNSR
Trigger: TCTCGAATTCAGCGTGATGGCTGGAGCTTCTGCCAAAAGCTGCATGAGTTGATTCTGTCCTTCAACAACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp GTGAATGATGGCAACACATTCACAGTGAGCCTGGCTTaGTGGGAGTATGTGGAGCCAAAGTGGTTTGTGATG +
Preference number: 6 (lower is better)
Translates to: VNDGNTFTVSLA*WEYVEPKWFVM
Trigger: CATCACAAACCACTTTGGCTCCACATACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGCCATCATTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS TCA 72 bp AGTCCGGATGGCAATGTCATGGGGTATTTTAGTGAATaGTGGCAACACATTCACAGTGAGCCTGGCTTTGTG +
Preference number: 6 (lower is better)
Translates to: SPDGNVMGYFSE*WQHIHSEPGFV
Trigger: CACAAAGCCAGGCTCACTGTGAATGTGTTGCCATCATTCACTAAAATACCCCATGACATTGCCATCCGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp TTCAGCTGGCTCCCATCCACACTAAGGATCTTGTTGTaGTGCAAAAAGAGAGAGACAACTCCTATGGAAGCA +
Preference number: 6 (lower is better)
Translates to: FSWLPSTLRILL*CKKRETTPMEA
Trigger: TGCTTCCATAGGAGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 72 bp TACGACTTCAGCTGGCTCCCATCCACACTAAGGATCTaGTTGTGCTGCAAAAAGAGAGAGACAACTCCTATG +
Preference number: 6 (lower is better)
Translates to: YDFSWLPSTLRI*LCCKKRETTPM
Trigger: CATAGGAGTTGTCTCTCTCTTTTTGCAGCACAACAAGATCCTTAGTGTGGATGGGAGCCAGCTGAAGTCGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CAA 90 bp GGTATTTTAGTGAATGATGGCAACACATTCACAGTGAGCCTGGCTTaGTGGGAGTATGTGGAGCCAAAGTGGTTTGTGATGATACACTGG +
Preference number: 6 (lower is better)
Translates to: GILVNDGNTFTVSLA*WEYVEPKWFVMIHW
Trigger: CCAGTGTATCATCACAAACCACTTTGGCTCCACATACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGCCATCATTCACTAAAATACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS CCA 72 bp AATGATGGCAACACATTCACAGTGAGCCTGGCTTTGTaGGAGTATGTGGAGCCAAAGTGGTTTGTGATGATA +
Preference number: 6 (lower is better)
Translates to: NDGNTFTVSLAL*EYVEPKWFVMI
Trigger: TATCATCACAAACCACTTTGGCTCCACATACTCCCACAAAGCCAGGCTCACTGTGAATGTGTTGCCATCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3
CDS GCA 72 bp ACTGCTGATGTAGAGCTCTTTAAGGTTCTTCATCTTTaGAAAGGCATCAAACTGGACAGACCTGATTGCATT +
Preference number: 6 (lower is better)
Translates to: TADVELFKVLHL*KGIKLDRPDCI
Trigger: AATGCAATCAGGTCTGTCCAGTTTGATGCCTTTGCAAAGATGAAGAACCTTAAAGAGCTCTACATCAGCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032105.11
ENSMUST00000101126.3
ENSMUST00000204645.3